1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 87d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4179680b7ceSStefano Zampini /* Not sure LogFlops will slow down the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612966bd95aSPierre Jolivet PetscCheck(1 == ((Mat_SeqAIJ *)aij->B->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 6140587a0fcSBarry Smith } 615c48de900SBarry Smith } else col = in[j]; 6168d76821aSHong Zhang nonew = b->nonew; 617d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6181eb62cbbSBarry Smith } 6191eb62cbbSBarry Smith } 6205ef9f2a5SBarry Smith } else { 62128b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62290f02eecSBarry Smith if (!aij->donotstash) { 6235080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 624d36fbae8SSatish Balay if (roworiented) { 6258e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 626d36fbae8SSatish Balay } else { 6278e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6284b0e389bSBarry Smith } 6291eb62cbbSBarry Smith } 6308a729477SBarry Smith } 63190f02eecSBarry Smith } 6325519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6358a729477SBarry Smith } 6368a729477SBarry Smith 6372b08fdbeSandi selinger /* 638904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6392b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 640904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6412b08fdbeSandi selinger */ 642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 643d71ae5a4SJacob Faibussowitsch { 644904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 645904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6464cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 647904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 648904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 649904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 650904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 651904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6526dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 653904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 654904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 655904d1e70Sandi selinger 656904d1e70Sandi selinger PetscFunctionBegin; 657904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 658904d1e70Sandi selinger for (j = 0; j < am; j++) { 659904d1e70Sandi selinger dnz = onz = 0; 660904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6616dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 662904d1e70Sandi selinger /* If column is in the diagonal */ 663904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 664904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 665904d1e70Sandi selinger dnz++; 666904d1e70Sandi selinger } else { /* off-diagonal entries */ 667904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 668904d1e70Sandi selinger onz++; 669904d1e70Sandi selinger } 670904d1e70Sandi selinger } 671904d1e70Sandi selinger ailen[j] = dnz; 672904d1e70Sandi selinger bilen[j] = onz; 673904d1e70Sandi selinger } 6743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 675904d1e70Sandi selinger } 676904d1e70Sandi selinger 677904d1e70Sandi selinger /* 678904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 679904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6801de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6811de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6821de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 683904d1e70Sandi selinger */ 684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 685d71ae5a4SJacob Faibussowitsch { 6863a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6873a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6884cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 689f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6903a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6913a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6923a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6933a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6943a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6956dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6961de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 697904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 698904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6993a063d27Sandi selinger 7003a063d27Sandi selinger PetscFunctionBegin; 7013a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7023a063d27Sandi selinger for (j = 0; j < am; j++) { 703904d1e70Sandi selinger dnz_row = onz_row = 0; 704904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 705904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 706e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 707e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 708ae8e66a0Sandi selinger /* If column is in the diagonal */ 7093a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 710904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 711904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 712904d1e70Sandi selinger dnz_row++; 713ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 714904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 715904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 716904d1e70Sandi selinger onz_row++; 7173a063d27Sandi selinger } 7183a063d27Sandi selinger } 719904d1e70Sandi selinger ailen[j] = dnz_row; 720904d1e70Sandi selinger bilen[j] = onz_row; 7213a063d27Sandi selinger } 7223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7233a063d27Sandi selinger } 7243a063d27Sandi selinger 725ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 726d71ae5a4SJacob Faibussowitsch { 727b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 728d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 729d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 730b49de8d1SLois Curfman McInnes 7313a40ed3dSBarry Smith PetscFunctionBegin; 732b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73585835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 736b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 737b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 73954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 740b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 741b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7429566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 743fa852ad4SSatish Balay } else { 74448a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 745aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 746eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 747fa46199cSSatish Balay col--; 748b1fc9764SSatish Balay #else 749905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 750b1fc9764SSatish Balay #endif 751e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75248a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 753b49de8d1SLois Curfman McInnes } 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 7563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 757b49de8d1SLois Curfman McInnes } 758bc5ccf88SSatish Balay 759ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 760d71ae5a4SJacob Faibussowitsch { 761bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 762b1d57f15SBarry Smith PetscInt nstash, reallocs; 763bc5ccf88SSatish Balay 764bc5ccf88SSatish Balay PetscFunctionBegin; 7653ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 766bc5ccf88SSatish Balay 7679566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7689566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 769*799b351eSPierre Jolivet PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771bc5ccf88SSatish Balay } 772bc5ccf88SSatish Balay 773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 774d71ae5a4SJacob Faibussowitsch { 775bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 776b1d57f15SBarry Smith PetscMPIInt n; 777b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 778e44c0bd4SBarry Smith PetscInt *row, *col; 779c0edf612SJunchao Zhang PetscBool all_assembled; 78087828ca2SBarry Smith PetscScalar *val; 781bc5ccf88SSatish Balay 78291c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7836e111a19SKarl Rupp 784bc5ccf88SSatish Balay PetscFunctionBegin; 7854cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 786a2d1c673SSatish Balay while (1) { 7879566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 788a2d1c673SSatish Balay if (!flg) break; 789a2d1c673SSatish Balay 790bc5ccf88SSatish Balay for (i = 0; i < n;) { 791bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7922205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7932205254eSKarl Rupp if (row[j] != rstart) break; 7942205254eSKarl Rupp } 795bc5ccf88SSatish Balay if (j < n) ncols = j - i; 796bc5ccf88SSatish Balay else ncols = n - i; 797bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7989566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 799bc5ccf88SSatish Balay i = j; 800bc5ccf88SSatish Balay } 801bc5ccf88SSatish Balay } 8029566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 803bc5ccf88SSatish Balay } 8048c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 805c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8069ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8079ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8089566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8109ecce9b1SRichard Tran Mills } 811e2cf4d64SStefano Zampini #endif 8129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 814bc5ccf88SSatish Balay 815b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 816071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 817bc5ccf88SSatish Balay /* 818bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 819b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 820bc5ccf88SSatish Balay */ 821bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8225440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 823c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 824eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 825ad59fb31SSatish Balay } 826ad59fb31SSatish Balay } 82748a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8289566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8298c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 830c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 831e2cf4d64SStefano Zampini #endif 8329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 834bc5ccf88SSatish Balay 8359566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8362205254eSKarl Rupp 837f4259b30SLisandro Dalcin aij->rowvalues = NULL; 838a30b2313SHong Zhang 8399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 840e56f5c9eSBarry Smith 8414f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 842f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 843e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 844462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 845e56f5c9eSBarry Smith } 8468c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 847c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 848e2cf4d64SStefano Zampini #endif 8493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 850bc5ccf88SSatish Balay } 851bc5ccf88SSatish Balay 852ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 853d71ae5a4SJacob Faibussowitsch { 85444a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8553a40ed3dSBarry Smith 8563a40ed3dSBarry Smith PetscFunctionBegin; 8579566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8601eb62cbbSBarry Smith } 8611eb62cbbSBarry Smith 862ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 863d71ae5a4SJacob Faibussowitsch { 8641b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8651b1dd7adSMatthew G. Knepley PetscInt *lrows; 8666e520ac8SStefano Zampini PetscInt r, len; 8679939a2d1SBarry Smith PetscBool cong; 8681eb62cbbSBarry Smith 8693a40ed3dSBarry Smith PetscFunctionBegin; 8706e520ac8SStefano Zampini /* get locally owned rows */ 8719566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8729566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 873dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87497b48c8fSBarry Smith if (x && b) { 8751b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8761b1dd7adSMatthew G. Knepley PetscScalar *bb; 8771b1dd7adSMatthew G. Knepley 87828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8799566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8811b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88497b48c8fSBarry Smith } 885a92ad425SStefano Zampini 886a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8879566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 889a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 890a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 891a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 892a92ad425SStefano Zampini PetscInt nnwA, nnwB; 893a92ad425SStefano Zampini PetscBool nnzA, nnzB; 894a92ad425SStefano Zampini 895a92ad425SStefano Zampini nnwA = aijA->nonew; 896a92ad425SStefano Zampini nnwB = aijB->nonew; 897a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 898a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 899a92ad425SStefano Zampini if (!nnzA) { 9009566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 901a92ad425SStefano Zampini aijA->nonew = 0; 902a92ad425SStefano Zampini } 903a92ad425SStefano Zampini if (!nnzB) { 9049566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 905a92ad425SStefano Zampini aijB->nonew = 0; 906a92ad425SStefano Zampini } 907a92ad425SStefano Zampini /* Must zero here before the next loop */ 9089566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9101b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9111b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 912a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9139566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 914e2d53e46SBarry Smith } 915a92ad425SStefano Zampini aijA->nonew = nnwA; 916a92ad425SStefano Zampini aijB->nonew = nnwB; 9176eb55b6aSBarry Smith } else { 9189566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9206eb55b6aSBarry Smith } 9219566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9244f9cfa9eSBarry Smith 9259939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 926f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9279939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 928462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9299939a2d1SBarry Smith } 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9311eb62cbbSBarry Smith } 9321eb62cbbSBarry Smith 933ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 934d71ae5a4SJacob Faibussowitsch { 9359c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9366497c311SBarry Smith PetscInt n = A->rmap->n; 937131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93854bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 939131c27b5Sprj- PetscMPIInt p = 0; 94054bd4135SMatthew G. Knepley PetscSFNode *rrows; 94154bd4135SMatthew G. Knepley PetscSF sf; 9429c7c4993SBarry Smith const PetscScalar *xx; 943fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 944564f14d6SBarry Smith Vec xmask, lmask; 945564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 946564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 947564f14d6SBarry Smith PetscScalar *aa; 9489c7c4993SBarry Smith 9499c7c4993SBarry Smith PetscFunctionBegin; 95054bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95254bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95454bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95554bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 956aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9575ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9589566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9595ba17502SJed Brown } 96054bd4135SMatthew G. Knepley rrows[r].rank = p; 96154bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9629c7c4993SBarry Smith } 9639566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9649566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96554bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9669566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 96954bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9709371c9d4SSatish Balay for (r = 0; r < n; ++r) 9719371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 972564f14d6SBarry Smith /* zero diagonal part of matrix */ 9739566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9744cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9759566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9769566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9779566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97854bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 983a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 984a92ad425SStefano Zampini PetscBool cong; 985a92ad425SStefano Zampini 9869566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98728b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 992377aa5a1SBarry Smith } 9939566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9944cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 996564f14d6SBarry Smith ii = aij->i; 9978e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 998564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 999564f14d6SBarry Smith if (aij->compressedrow.use) { 1000564f14d6SBarry Smith m = aij->compressedrow.nrows; 1001564f14d6SBarry Smith ii = aij->compressedrow.i; 1002564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1003564f14d6SBarry Smith for (i = 0; i < m; i++) { 1004564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1005564f14d6SBarry Smith aj = aij->j + ii[i]; 1006fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1007564f14d6SBarry Smith 1008564f14d6SBarry Smith for (j = 0; j < n; j++) { 100925266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1010377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1011564f14d6SBarry Smith *aa = 0.0; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith aa++; 1014564f14d6SBarry Smith aj++; 1015564f14d6SBarry Smith } 1016564f14d6SBarry Smith ridx++; 1017564f14d6SBarry Smith } 1018564f14d6SBarry Smith } else { /* do not use compressed row format */ 1019564f14d6SBarry Smith m = l->B->rmap->n; 1020564f14d6SBarry Smith for (i = 0; i < m; i++) { 1021564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1022564f14d6SBarry Smith aj = aij->j + ii[i]; 1023fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1024564f14d6SBarry Smith for (j = 0; j < n; j++) { 102525266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1026377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1027564f14d6SBarry Smith *aa = 0.0; 1028564f14d6SBarry Smith } 1029564f14d6SBarry Smith aa++; 1030564f14d6SBarry Smith aj++; 1031564f14d6SBarry Smith } 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034a92ad425SStefano Zampini if (x && b) { 10359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1037377aa5a1SBarry Smith } 10389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10419566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10424f9cfa9eSBarry Smith 10434f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1044f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10454f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1046462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10474f9cfa9eSBarry Smith } 10483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10499c7c4993SBarry Smith } 10509c7c4993SBarry Smith 1051ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1052d71ae5a4SJacob Faibussowitsch { 1053416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1054b1d57f15SBarry Smith PetscInt nt; 105519b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1056416022c9SBarry Smith 10573a40ed3dSBarry Smith PetscFunctionBegin; 10589566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 105908401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1061296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1063296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10651eb62cbbSBarry Smith } 10661eb62cbbSBarry Smith 1067ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1068d71ae5a4SJacob Faibussowitsch { 1069bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1070bd0c2dcbSBarry Smith 1071bd0c2dcbSBarry Smith PetscFunctionBegin; 10729566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1074bd0c2dcbSBarry Smith } 1075bd0c2dcbSBarry Smith 1076ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1077d71ae5a4SJacob Faibussowitsch { 1078416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 107901ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10803a40ed3dSBarry Smith 10813a40ed3dSBarry Smith PetscFunctionBegin; 10829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10839566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10849566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10859566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087da3a660dSBarry Smith } 1088da3a660dSBarry Smith 1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1090d71ae5a4SJacob Faibussowitsch { 1091416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1092da3a660dSBarry Smith 10933a40ed3dSBarry Smith PetscFunctionBegin; 1094da3a660dSBarry Smith /* do nondiagonal part */ 10959566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1096da3a660dSBarry Smith /* do local part */ 10979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10989613dc34SJunchao Zhang /* add partial results together */ 10999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1102da3a660dSBarry Smith } 1103da3a660dSBarry Smith 1104ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1105d71ae5a4SJacob Faibussowitsch { 11064f423910Svictorle MPI_Comm comm; 1107ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1108ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1109cd0d46ebSvictorle IS Me, Notme; 1110b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111154d735aeSStefano Zampini PetscBool lf; 1112b1d57f15SBarry Smith PetscMPIInt size; 1113cd0d46ebSvictorle 1114cd0d46ebSvictorle PetscFunctionBegin; 111542e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 11175440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11183ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11213ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112242e5f5b4Svictorle 11237dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11249566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1127cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1128cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11309566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11319566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113266501d38Svictorle Aoff = Aoffs[0]; 11339566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113466501d38Svictorle Boff = Boffs[0]; 11359566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11369566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11409566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1142cd0d46ebSvictorle } 1143cd0d46ebSvictorle 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1147da3a660dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 1149da3a660dSBarry Smith /* do nondiagonal part */ 11509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1151da3a660dSBarry Smith /* do local part */ 11529566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11539613dc34SJunchao Zhang /* add partial results together */ 11549566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11559566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1157da3a660dSBarry Smith } 1158da3a660dSBarry Smith 11591eb62cbbSBarry Smith /* 11601eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11611eb62cbbSBarry Smith diagonal block 11621eb62cbbSBarry Smith */ 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1164d71ae5a4SJacob Faibussowitsch { 1165416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11663a40ed3dSBarry Smith 11673a40ed3dSBarry Smith PetscFunctionBegin; 116808401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1169aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11709566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11721eb62cbbSBarry Smith } 11731eb62cbbSBarry Smith 1174ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1175d71ae5a4SJacob Faibussowitsch { 1176052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11773a40ed3dSBarry Smith 11783a40ed3dSBarry Smith PetscFunctionBegin; 11799566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1182052efed2SBarry Smith } 1183052efed2SBarry Smith 1184ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1185d71ae5a4SJacob Faibussowitsch { 11868e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11878e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11893ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11902e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119117a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119217a3732bSBarry Smith PetscInt64 nz, hnz; 11933ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11943ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11953ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119617a3732bSBarry Smith PetscMPIInt rank; 11978e2fed03SBarry Smith 11988e2fed03SBarry Smith PetscFunctionBegin; 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12003ea6fe3dSLisandro Dalcin 12013ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12023ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12033ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12043ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12053ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12068e2fed03SBarry Smith nz = A->nz + B->nz; 12073ea6fe3dSLisandro Dalcin 12083ea6fe3dSLisandro Dalcin /* write matrix header */ 12090700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12109371c9d4SSatish Balay header[1] = M; 12119371c9d4SSatish Balay header[2] = N; 121217a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121317a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1214835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12168e2fed03SBarry Smith 12173ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12193ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12219566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12228e2fed03SBarry Smith 12233ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12283ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12328e2fed03SBarry Smith } 123317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12368e2fed03SBarry Smith 12373ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12413ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12423ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12433ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12442e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12458e2fed03SBarry Smith } 12469371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12479371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12488e2fed03SBarry Smith } 12499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125117a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12539566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12548e2fed03SBarry Smith 12553ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12569566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12588e2fed03SBarry Smith } 12598e2fed03SBarry Smith 12609804daf3SBarry Smith #include <petscdraw.h> 1261ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1262d71ae5a4SJacob Faibussowitsch { 126344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126432dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 12659f196a02SMartin Diehl PetscBool isdraw, isascii, isbinary; 1266b0a32e0cSBarry Smith PetscViewer sviewer; 1267f3ef73ceSBarry Smith PetscViewerFormat format; 1268416022c9SBarry Smith 12693a40ed3dSBarry Smith PetscFunctionBegin; 12709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12719f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 12739f196a02SMartin Diehl if (isascii) { 12749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1275ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12761690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1279835f2295SStefano Zampini for (i = 0; i < size; i++) { 1280ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1281ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1282ef5fdb51SBarry Smith navg += nz[i]; 1283ef5fdb51SBarry Smith } 12849566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1285ef5fdb51SBarry Smith navg = navg / size; 12869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1288ef5fdb51SBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1290456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12914e220ebcSLois Curfman McInnes MatInfo info; 12926335e310SSatish Balay PetscInt *inodes = NULL; 1293923f20ffSKris Buschelman 12949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12959566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12969566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1298923f20ffSKris Buschelman if (!inodes) { 12999371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1300835f2295SStefano Zampini info.memory)); 13016831982aSBarry Smith } else { 1302835f2295SStefano Zampini PetscCall( 1303835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13046831982aSBarry Smith } 13059566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13079566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13129566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1314fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1315923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13169566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1317923f20ffSKris Buschelman if (inodes) { 13189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1319d38fa0fbSBarry Smith } else { 13209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1321d38fa0fbSBarry Smith } 13223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13234aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132508480c60SBarry Smith } 13268e2fed03SBarry Smith } else if (isbinary) { 13278e2fed03SBarry Smith if (size == 1) { 13289566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13299566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13308e2fed03SBarry Smith } else { 13319566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13328e2fed03SBarry Smith } 13333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13349f196a02SMartin Diehl } else if (isascii && size == 1) { 13359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13369566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13380f5bd95cSBarry Smith } else if (isdraw) { 1339b0a32e0cSBarry Smith PetscDraw draw; 1340ace3abfcSBarry Smith PetscBool isnull; 13419566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13429566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13433ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134419bcc07fSBarry Smith } 134519bcc07fSBarry Smith 134671e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134771e56450SStefano Zampini Mat A = NULL, Av; 134871e56450SStefano Zampini IS isrow, iscol; 13492ee70a88SLois Curfman McInnes 13509566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135471e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135571e56450SStefano Zampini /* 135671e56450SStefano Zampini Mat *AA, A = NULL, Av; 135771e56450SStefano Zampini IS isrow,iscol; 135871e56450SStefano Zampini 13599566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13619566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1362dd400576SPatrick Sanan if (rank == 0) { 13639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136471e56450SStefano Zampini A = AA[0]; 136571e56450SStefano Zampini Av = AA[0]; 136695373324SBarry Smith } 13679566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136871e56450SStefano Zampini */ 13699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137155843e3eSBarry Smith /* 137255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1373b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137455843e3eSBarry Smith */ 13759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1376dd400576SPatrick Sanan if (rank == 0) { 137748a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13789566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137995373324SBarry Smith } 13809566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138295373324SBarry Smith } 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13841eb62cbbSBarry Smith } 13851eb62cbbSBarry Smith 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1387d71ae5a4SJacob Faibussowitsch { 13889f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1389416022c9SBarry Smith 13903a40ed3dSBarry Smith PetscFunctionBegin; 13919f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 13959f196a02SMartin Diehl if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1397416022c9SBarry Smith } 1398416022c9SBarry Smith 1399ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1400d71ae5a4SJacob Faibussowitsch { 140144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1402f4259b30SLisandro Dalcin Vec bb1 = NULL; 1403ace3abfcSBarry Smith PetscBool hasop; 14048a729477SBarry Smith 14053a40ed3dSBarry Smith PetscFunctionBegin; 1406a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1409a2b30743SBarry Smith } 1410a2b30743SBarry Smith 141148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14124e980039SJed Brown 1413c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1414da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14162798e883SHong Zhang its--; 1417da3a660dSBarry Smith } 14182798e883SHong Zhang 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14262798e883SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1442c14dc6b6SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 14463a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1447da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14492798e883SHong Zhang its--; 1450da3a660dSBarry Smith } 14512798e883SHong Zhang while (its--) { 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14542798e883SHong Zhang 1455c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14569566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14579566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14582798e883SHong Zhang 1459c14dc6b6SHong Zhang /* local sweep */ 14609566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14612798e883SHong Zhang } 1462a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1463a7420bb7SBarry Smith Vec xx1; 1464a7420bb7SBarry Smith 14659566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1467a7420bb7SBarry Smith 14689566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14699566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1470a7420bb7SBarry Smith if (!mat->diag) { 14719566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14729566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1473a7420bb7SBarry Smith } 14749566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1475bd0c2dcbSBarry Smith if (hasop) { 14769566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1477bd0c2dcbSBarry Smith } else { 14789566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1479bd0c2dcbSBarry Smith } 14809566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1481887ee2caSBarry Smith 14829566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1483a7420bb7SBarry Smith 1484a7420bb7SBarry Smith /* local sweep */ 14859566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14869566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1488ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1489c14dc6b6SHong Zhang 14909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1491a0808db4SHong Zhang 14927b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14948a729477SBarry Smith } 1495a66be287SLois Curfman McInnes 1496ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1497d71ae5a4SJacob Faibussowitsch { 149872e6a0cfSJed Brown Mat aA, aB, Aperm; 149972e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150072e6a0cfSJed Brown PetscScalar *aa, *ba; 150172e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150272e6a0cfSJed Brown PetscSF rowsf, sf; 15030298fd71SBarry Smith IS parcolp = NULL; 150472e6a0cfSJed Brown PetscBool done; 150542e855d1Svictor 150642e855d1Svictor PetscFunctionBegin; 15079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15109566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151172e6a0cfSJed Brown 151272e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151672e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151972e6a0cfSJed Brown 152072e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152472e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15259566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152872e6a0cfSJed Brown 15299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15319566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153272e6a0cfSJed Brown 153372e6a0cfSJed Brown /* Find out where my gcols should go */ 15349566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15369566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154272e6a0cfSJed Brown 15439566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15449566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154672e6a0cfSJed Brown for (i = 0; i < m; i++) { 1547131c27b5Sprj- PetscInt row = rdest[i]; 1548131c27b5Sprj- PetscMPIInt rowner; 15499566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155072e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1551131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1552131c27b5Sprj- PetscMPIInt cowner; 15539566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155472e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155572e6a0cfSJed Brown else onnz[i]++; 155672e6a0cfSJed Brown } 155772e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1558131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1559131c27b5Sprj- PetscMPIInt cowner; 15609566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156172e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156272e6a0cfSJed Brown else onnz[i]++; 156372e6a0cfSJed Brown } 156472e6a0cfSJed Brown } 15659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157072e6a0cfSJed Brown 15719566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157472e6a0cfSJed Brown for (i = 0; i < m; i++) { 157572e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1576970468b0SJed Brown PetscInt j0, rowlen; 157772e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1578970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1579970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15809566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1581970468b0SJed Brown } 158272e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1583970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1584970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15859566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1586970468b0SJed Brown } 158772e6a0cfSJed Brown } 15889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15949566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15979566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159872e6a0cfSJed Brown *B = Aperm; 15993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160042e855d1Svictor } 160142e855d1Svictor 1602ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1603d71ae5a4SJacob Faibussowitsch { 1604c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1605c5e4d11fSDmitry Karpeev 1606c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16079566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1608c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1610c5e4d11fSDmitry Karpeev } 1611c5e4d11fSDmitry Karpeev 1612ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1613d71ae5a4SJacob Faibussowitsch { 1614a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1615a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16163966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1617a66be287SLois Curfman McInnes 16183a40ed3dSBarry Smith PetscFunctionBegin; 16194e220ebcSLois Curfman McInnes info->block_size = 1.0; 16209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16212205254eSKarl Rupp 16229371c9d4SSatish Balay isend[0] = info->nz_used; 16239371c9d4SSatish Balay isend[1] = info->nz_allocated; 16249371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16259371c9d4SSatish Balay isend[3] = info->memory; 16269371c9d4SSatish Balay isend[4] = info->mallocs; 16272205254eSKarl Rupp 16289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16292205254eSKarl Rupp 16309371c9d4SSatish Balay isend[0] += info->nz_used; 16319371c9d4SSatish Balay isend[1] += info->nz_allocated; 16329371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16339371c9d4SSatish Balay isend[3] += info->memory; 16349371c9d4SSatish Balay isend[4] += info->mallocs; 1635a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16364e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16394e220ebcSLois Curfman McInnes info->memory = isend[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1641a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1642462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16432205254eSKarl Rupp 16444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1649a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1650462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16512205254eSKarl Rupp 16524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1657a66be287SLois Curfman McInnes } 16584e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16594e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16604e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1662a66be287SLois Curfman McInnes } 1663a66be287SLois Curfman McInnes 1664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1665d71ae5a4SJacob Faibussowitsch { 1666c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1667c74985f6SBarry Smith 16683a40ed3dSBarry Smith PetscFunctionBegin; 166912c028f9SKris Buschelman switch (op) { 1670512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1673a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16750ad02fcaSStefano Zampini case MAT_USE_INODES: 167612c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16771a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1678fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168112c028f9SKris Buschelman break; 168212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168343674050SBarry Smith MatCheckPreallocated(A, 1); 16844e0d8c25SBarry Smith a->roworiented = flg; 16852205254eSKarl Rupp 16869566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168812c028f9SKris Buschelman break; 1689d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1690d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1691d71ae5a4SJacob Faibussowitsch break; 1692c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1693ffa07934SHong Zhang case MAT_SPD: 169477e54ba9SKris Buschelman case MAT_SYMMETRIC: 169577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1696bf108f30SBarry Smith case MAT_HERMITIAN: 1697bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1698b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1700b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17019725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170277e54ba9SKris Buschelman break; 1703d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1704d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1705d71ae5a4SJacob Faibussowitsch break; 1706d71ae5a4SJacob Faibussowitsch default: 1707888c827cSStefano Zampini break; 17083a40ed3dSBarry Smith } 17093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1710c74985f6SBarry Smith } 1711c74985f6SBarry Smith 1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1713d71ae5a4SJacob Faibussowitsch { 1714154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171587828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1716d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1717d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1718b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171939e00950SLois Curfman McInnes 17203a40ed3dSBarry Smith PetscFunctionBegin; 172128b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17227a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17237a0afa10SBarry Smith 172470f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17257a0afa10SBarry Smith /* 17267a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17277a0afa10SBarry Smith */ 17287a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1729b1d57f15SBarry Smith PetscInt max = 1, tmp; 1730d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17317a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17322205254eSKarl Rupp if (max < tmp) max = tmp; 17337a0afa10SBarry Smith } 17349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17357a0afa10SBarry Smith } 17367a0afa10SBarry Smith 1737aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1738abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173939e00950SLois Curfman McInnes 17409371c9d4SSatish Balay pvA = &vworkA; 17419371c9d4SSatish Balay pcA = &cworkA; 17429371c9d4SSatish Balay pvB = &vworkB; 17439371c9d4SSatish Balay pcB = &cworkB; 17449371c9d4SSatish Balay if (!v) { 17459371c9d4SSatish Balay pvA = NULL; 17469371c9d4SSatish Balay pvB = NULL; 17479371c9d4SSatish Balay } 17489371c9d4SSatish Balay if (!idx) { 17499371c9d4SSatish Balay pcA = NULL; 17509371c9d4SSatish Balay if (!v) pcB = NULL; 17519371c9d4SSatish Balay } 17529566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17539566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1754154123eaSLois Curfman McInnes nztot = nzA + nzB; 1755154123eaSLois Curfman McInnes 175670f0671dSBarry Smith cmap = mat->garray; 1757154123eaSLois Curfman McInnes if (v || idx) { 1758154123eaSLois Curfman McInnes if (nztot) { 1759154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1760b1d57f15SBarry Smith PetscInt imark = -1; 1761154123eaSLois Curfman McInnes if (v) { 176270f0671dSBarry Smith *v = v_p = mat->rowvalues; 176339e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1765154123eaSLois Curfman McInnes else break; 1766154123eaSLois Curfman McInnes } 1767154123eaSLois Curfman McInnes imark = i; 176870f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176970f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1770154123eaSLois Curfman McInnes } 1771154123eaSLois Curfman McInnes if (idx) { 177270f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177370f0671dSBarry Smith if (imark > -1) { 1774ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177570f0671dSBarry Smith } else { 1776154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177770f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1778154123eaSLois Curfman McInnes else break; 1779154123eaSLois Curfman McInnes } 1780154123eaSLois Curfman McInnes imark = i; 178170f0671dSBarry Smith } 178270f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178370f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178439e00950SLois Curfman McInnes } 17853f97c4b0SBarry Smith } else { 1786f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1787f4259b30SLisandro Dalcin if (v) *v = NULL; 17881ca473b0SSatish Balay } 1789154123eaSLois Curfman McInnes } 179039e00950SLois Curfman McInnes *nz = nztot; 17919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17929566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179439e00950SLois Curfman McInnes } 179539e00950SLois Curfman McInnes 1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1797d71ae5a4SJacob Faibussowitsch { 17987a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17993a40ed3dSBarry Smith 18003a40ed3dSBarry Smith PetscFunctionBegin; 180128b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18027a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180439e00950SLois Curfman McInnes } 180539e00950SLois Curfman McInnes 1806ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1807d71ae5a4SJacob Faibussowitsch { 1808855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1809ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 181075dbe01dSPierre Jolivet PetscInt i, j; 1811329f5518SBarry Smith PetscReal sum = 0.0; 1812fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181304ca555eSLois Curfman McInnes 18143a40ed3dSBarry Smith PetscFunctionBegin; 181517699dbbSLois Curfman McInnes if (aij->size == 1) { 18169566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181737fa93a5SLois Curfman McInnes } else { 18189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182004ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1821fff043a9SJunchao Zhang v = amata; 182204ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18239371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18249371c9d4SSatish Balay v++; 182504ca555eSLois Curfman McInnes } 1826fff043a9SJunchao Zhang v = bmata; 182704ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18289371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18299371c9d4SSatish Balay v++; 183004ca555eSLois Curfman McInnes } 1831462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18328f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18339566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18343a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 18358ba8550cSPierre Jolivet Vec col, bcol; 183675dbe01dSPierre Jolivet PetscScalar *array; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 183875dbe01dSPierre Jolivet 183975dbe01dSPierre Jolivet PetscCall(MatCreateVecs(mat, &col, NULL)); 184075dbe01dSPierre Jolivet PetscCall(VecSet(col, 0.0)); 184175dbe01dSPierre Jolivet PetscCall(VecGetArrayWrite(col, &array)); 18429371c9d4SSatish Balay v = amata; 18439371c9d4SSatish Balay jj = amat->j; 184475dbe01dSPierre Jolivet for (j = 0; j < amat->nz; j++) array[*jj++] += PetscAbsScalar(*v++); 184575dbe01dSPierre Jolivet PetscCall(VecRestoreArrayWrite(col, &array)); 18468ba8550cSPierre Jolivet PetscCall(MatCreateVecs(aij->B, &bcol, NULL)); 18478ba8550cSPierre Jolivet PetscCall(VecSet(bcol, 0.0)); 18488ba8550cSPierre Jolivet PetscCall(VecGetArrayWrite(bcol, &array)); 18499371c9d4SSatish Balay v = bmata; 18509371c9d4SSatish Balay jj = bmat->j; 18518ba8550cSPierre Jolivet for (j = 0; j < bmat->nz; j++) array[*jj++] += PetscAbsScalar(*v++); 18528ba8550cSPierre Jolivet PetscCall(VecSetValues(col, aij->B->cmap->n, garray, array, ADD_VALUES)); 18538ba8550cSPierre Jolivet PetscCall(VecRestoreArrayWrite(bcol, &array)); 18548ba8550cSPierre Jolivet PetscCall(VecDestroy(&bcol)); 185575dbe01dSPierre Jolivet PetscCall(VecAssemblyBegin(col)); 185675dbe01dSPierre Jolivet PetscCall(VecAssemblyEnd(col)); 185775dbe01dSPierre Jolivet PetscCall(VecNorm(col, NORM_INFINITY, norm)); 185875dbe01dSPierre Jolivet PetscCall(VecDestroy(&col)); 18593a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1860329f5518SBarry Smith PetscReal ntemp = 0.0; 1861d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18628e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186304ca555eSLois Curfman McInnes sum = 0.0; 186404ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18659371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18669371c9d4SSatish Balay v++; 186704ca555eSLois Curfman McInnes } 18688e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186904ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18709371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18719371c9d4SSatish Balay v++; 187204ca555eSLois Curfman McInnes } 1873515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187404ca555eSLois Curfman McInnes } 1875462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1877ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 188037fa93a5SLois Curfman McInnes } 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1882855ac2c5SLois Curfman McInnes } 1883855ac2c5SLois Curfman McInnes 1884ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1885d71ae5a4SJacob Faibussowitsch { 1886a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1887a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1888071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1889071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1890a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1891ce496241SStefano Zampini const MatScalar *pbv, *bv; 1892b7c46309SBarry Smith 18933a40ed3dSBarry Smith PetscFunctionBegin; 18947fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18959371c9d4SSatish Balay ma = A->rmap->n; 18969371c9d4SSatish Balay na = A->cmap->n; 18979371c9d4SSatish Balay mb = a->B->rmap->n; 18989371c9d4SSatish Balay nb = a->B->cmap->n; 18999371c9d4SSatish Balay ai = Aloc->i; 19009371c9d4SSatish Balay aj = Aloc->j; 19019371c9d4SSatish Balay bi = Bloc->i; 19029371c9d4SSatish Balay bj = Bloc->j; 1903fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190480bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190580bcc5a1SJed Brown PetscSFNode *oloc; 1906713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190780bcc5a1SJed Brown 19089566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190980bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19109566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1911cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191280bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191480bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191580bcc5a1SJed Brown /* map those to global */ 19169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19189566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19199566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192157168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1923d4bb536fSBarry Smith 19249566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19299566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1930fc4dec0aSBarry Smith } else { 1931fc4dec0aSBarry Smith B = *matout; 19329566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1933fc4dec0aSBarry Smith } 1934b7c46309SBarry Smith 1935f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1936a8661f62Sandi selinger A_diag = a->A; 1937a8661f62Sandi selinger B_diag = &b->A; 1938a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1939a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1940a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1941a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1942f79cb1a0Sandi selinger 1943f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1944ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1945f79cb1a0Sandi selinger 19464cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1947a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19487fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19499566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1950f79cb1a0Sandi selinger 1951b7c46309SBarry Smith /* copy over the B part */ 19529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1954ce496241SStefano Zampini pbv = bv; 1955d0f46423SBarry Smith row = A->rmap->rstart; 19562205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195761a2fbbaSHong Zhang cols_tmp = cols; 1958da668accSHong Zhang for (i = 0; i < mb; i++) { 1959da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19609566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19612205254eSKarl Rupp row++; 1962720a2405SPierre Jolivet if (pbv) pbv += ncol; 1963720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1964b7c46309SBarry Smith } 19659566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1967fc73b1b3SBarry Smith 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1970cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19710de55854SLois Curfman McInnes *matout = B; 19720de55854SLois Curfman McInnes } else { 19739566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19740de55854SLois Curfman McInnes } 19753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1976b7c46309SBarry Smith } 1977b7c46309SBarry Smith 1978ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1979d71ae5a4SJacob Faibussowitsch { 19804b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19814b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1982b1d57f15SBarry Smith PetscInt s1, s2, s3; 1983a008b906SSatish Balay 19843a40ed3dSBarry Smith PetscFunctionBegin; 19859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19864b967eb1SSatish Balay if (rr) { 19879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198808401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19894b967eb1SSatish Balay /* Overlap communication with computation. */ 19909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1991a008b906SSatish Balay } 19924b967eb1SSatish Balay if (ll) { 19939566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199408401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1995dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19964b967eb1SSatish Balay } 19974b967eb1SSatish Balay /* scale the diagonal block */ 1998dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19994b967eb1SSatish Balay 20004b967eb1SSatish Balay if (rr) { 20014b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2003dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20044b967eb1SSatish Balay } 20053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2006a008b906SSatish Balay } 2007a008b906SSatish Balay 2008ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2009d71ae5a4SJacob Faibussowitsch { 2010bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20113a40ed3dSBarry Smith 20123a40ed3dSBarry Smith PetscFunctionBegin; 20139566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2015bb5a7306SBarry Smith } 2016bb5a7306SBarry Smith 2017ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2018d71ae5a4SJacob Faibussowitsch { 2019d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2020d4bb536fSBarry Smith Mat a, b, c, d; 2021ace3abfcSBarry Smith PetscBool flg; 2022d4bb536fSBarry Smith 20233a40ed3dSBarry Smith PetscFunctionBegin; 20249371c9d4SSatish Balay a = matA->A; 20259371c9d4SSatish Balay b = matA->B; 20269371c9d4SSatish Balay c = matB->A; 20279371c9d4SSatish Balay d = matB->B; 2028d4bb536fSBarry Smith 20299566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 203048a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20315440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2033d4bb536fSBarry Smith } 2034d4bb536fSBarry Smith 2035ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2036d71ae5a4SJacob Faibussowitsch { 2037cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2038cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2039cb5b572fSBarry Smith 2040cb5b572fSBarry Smith PetscFunctionBegin; 204133f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204233f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2043cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2044cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2045cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2046cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2047cb5b572fSBarry Smith then copying the submatrices */ 20489566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2049cb5b572fSBarry Smith } else { 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20519566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2052cb5b572fSBarry Smith } 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2055cb5b572fSBarry Smith } 2056cb5b572fSBarry Smith 2057001ddc4fSHong Zhang /* 2058001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2059001ddc4fSHong Zhang have different nonzero structure. 2060001ddc4fSHong Zhang */ 2061d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2062d71ae5a4SJacob Faibussowitsch { 2063001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206495b7e79eSJed Brown 206595b7e79eSJed Brown PetscFunctionBegin; 206695b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206795b7e79eSJed Brown for (i = 0; i < m; i++) { 20688e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2069001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2070001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207195b7e79eSJed Brown nnz[i] = 0; 207295b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2073001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2074001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207595b7e79eSJed Brown nnz[i]++; 207695b7e79eSJed Brown } 207795b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207895b7e79eSJed Brown } 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208095b7e79eSJed Brown } 208195b7e79eSJed Brown 2082001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2084d71ae5a4SJacob Faibussowitsch { 2085001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2086001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2087001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2088001ddc4fSHong Zhang 2089001ddc4fSHong Zhang PetscFunctionBegin; 20909566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2092001ddc4fSHong Zhang } 2093001ddc4fSHong Zhang 2094ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2095d71ae5a4SJacob Faibussowitsch { 2096ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2097ac90fabeSBarry Smith 2098ac90fabeSBarry Smith PetscFunctionBegin; 2099ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2102ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21039566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2104ac90fabeSBarry Smith } else { 21059f5f6813SShri Abhyankar Mat B; 21069f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2107d9d719b4SStefano Zampini 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21109566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21139566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21179566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21189566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21209566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2121ac90fabeSBarry Smith } 21223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2123ac90fabeSBarry Smith } 2124ac90fabeSBarry Smith 21252726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2126354c94deSBarry Smith 2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2128d71ae5a4SJacob Faibussowitsch { 21295f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21305f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2131354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2132354c94deSBarry Smith 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21349566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21355f80ce2aSJacob Faibussowitsch } 21363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2137354c94deSBarry Smith } 2138354c94deSBarry Smith 2139ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2140d71ae5a4SJacob Faibussowitsch { 214199cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214299cafbc1SBarry Smith 214399cafbc1SBarry Smith PetscFunctionBegin; 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21459566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214799cafbc1SBarry Smith } 214899cafbc1SBarry Smith 2149ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2150d71ae5a4SJacob Faibussowitsch { 215199cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215299cafbc1SBarry Smith 215399cafbc1SBarry Smith PetscFunctionBegin; 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21559566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215799cafbc1SBarry Smith } 215899cafbc1SBarry Smith 2159ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2160d71ae5a4SJacob Faibussowitsch { 2161c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2162475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216362e5df07SMark Adams PetscScalar *vv; 2164475b8b61SHong Zhang Vec vB, vA; 216562e5df07SMark Adams const PetscScalar *va, *vb; 2166c91732d9SHong Zhang 2167c91732d9SHong Zhang PetscFunctionBegin; 2168c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21699566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2170475b8b61SHong Zhang 217162e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2172c91732d9SHong Zhang if (idx) { 2173475b8b61SHong Zhang for (i = 0; i < m; i++) { 2174d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang } 2177c91732d9SHong Zhang 2178c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21809566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2181c91732d9SHong Zhang 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21839566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2184475b8b61SHong Zhang for (i = 0; i < m; i++) { 2185c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2186475b8b61SHong Zhang vv[i] = vb[i]; 2187c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2188475b8b61SHong Zhang } else { 2189475b8b61SHong Zhang vv[i] = va[i]; 21909371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2191c91732d9SHong Zhang } 2192c91732d9SHong Zhang } 219362e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219462e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21969566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2200c91732d9SHong Zhang } 2201c91732d9SHong Zhang 2202eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2203eede4a3fSMark Adams { 2204eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2205eede4a3fSMark Adams Vec vB, vA; 2206eede4a3fSMark Adams 2207eede4a3fSMark Adams PetscFunctionBegin; 2208c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2209eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2210c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2211eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2212eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2213eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2214eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2215eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2216eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2217eede4a3fSMark Adams } 2218eede4a3fSMark Adams 2219ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2220d71ae5a4SJacob Faibussowitsch { 2221f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2222f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2223f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2224f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2225f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2226f07e67edSHong Zhang Vec diagV, offdiagV; 2227ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2228ce496241SStefano Zampini const PetscScalar *ba, *bav; 2229f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2230f07e67edSHong Zhang Mat B = mat->B; 2231f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2232c87e5d42SMatthew Knepley 2233c87e5d42SMatthew Knepley PetscFunctionBegin; 2234f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2235f07e67edSHong Zhang if (A->cmap->N == n) { 22369566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22379566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22389566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2242f07e67edSHong Zhang } else if (n == 0) { 2243f07e67edSHong Zhang if (m) { 22449566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22459371c9d4SSatish Balay for (r = 0; r < m; r++) { 22469371c9d4SSatish Balay a[r] = 0.0; 22479371c9d4SSatish Balay if (idx) idx[r] = -1; 22489371c9d4SSatish Balay } 22499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2250f07e67edSHong Zhang } 22513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2252f07e67edSHong Zhang } 2253f07e67edSHong Zhang 22549566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22569566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22579566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2258f07e67edSHong Zhang 2259f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2261ce496241SStefano Zampini ba = bav; 2262f07e67edSHong Zhang bi = b->i; 2263f07e67edSHong Zhang bj = b->j; 22649566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2265f07e67edSHong Zhang for (r = 0; r < m; r++) { 2266f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2267f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22689371c9d4SSatish Balay offdiagA[r] = *ba; 22699371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2270f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2271f07e67edSHong Zhang offdiagA[r] = 0.0; 2272f07e67edSHong Zhang 2273f07e67edSHong Zhang /* Find first hole in the cmap */ 2274f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2275f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2276f07e67edSHong Zhang if (col > j && j < cstart) { 2277f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2278f07e67edSHong Zhang break; 2279f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2280f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2281f07e67edSHong Zhang break; 2282f07e67edSHong Zhang } 2283f07e67edSHong Zhang } 22844e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2285f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2286f07e67edSHong Zhang if (ncols == 0) { 2287f07e67edSHong Zhang if (cstart) { 2288f07e67edSHong Zhang offdiagIdx[r] = 0; 2289f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2290f07e67edSHong Zhang } else { /* ncols > 0 */ 2291f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2292f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang } 2296f07e67edSHong Zhang 2297f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22989371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22999371c9d4SSatish Balay offdiagA[r] = *ba; 23009371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23019371c9d4SSatish Balay } 23029371c9d4SSatish Balay ba++; 23039371c9d4SSatish Balay bj++; 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang } 2306f07e67edSHong Zhang 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2309f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2310f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2311f07e67edSHong Zhang a[r] = diagA[r]; 2312f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2313f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2314f07e67edSHong Zhang a[r] = diagA[r]; 2315c87e5d42SMatthew Knepley if (idx) { 2316f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2317f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2318f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2319f07e67edSHong Zhang } 2320f07e67edSHong Zhang } else { 2321f07e67edSHong Zhang a[r] = offdiagA[r]; 2322f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2323c87e5d42SMatthew Knepley } 2324c87e5d42SMatthew Knepley } 23259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23309566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23319566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2333c87e5d42SMatthew Knepley } 2334c87e5d42SMatthew Knepley 2335ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2336d71ae5a4SJacob Faibussowitsch { 233703bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2338fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2339fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 234003bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234103bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234203bc72f1SMatthew Knepley Vec diagV, offdiagV; 2343ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2344ce496241SStefano Zampini const PetscScalar *ba, *bav; 2345fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2346fa213d2fSHong Zhang Mat B = mat->B; 2347fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234803bc72f1SMatthew Knepley 234903bc72f1SMatthew Knepley PetscFunctionBegin; 2350fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2351fa213d2fSHong Zhang if (A->cmap->N == n) { 23529566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23539566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23549566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2358fa213d2fSHong Zhang } else if (n == 0) { 2359fa213d2fSHong Zhang if (m) { 23609566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23619371c9d4SSatish Balay for (r = 0; r < m; r++) { 23629371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23639371c9d4SSatish Balay if (idx) idx[r] = -1; 23649371c9d4SSatish Balay } 23659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2366fa213d2fSHong Zhang } 23673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2368fa213d2fSHong Zhang } 2369fa213d2fSHong Zhang 23709566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23729566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23739566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2374fa213d2fSHong Zhang 2375fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2377ce496241SStefano Zampini ba = bav; 2378fa213d2fSHong Zhang bi = b->i; 2379fa213d2fSHong Zhang bj = b->j; 23809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2381fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2382fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2383fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23849371c9d4SSatish Balay offdiagA[r] = *ba; 23859371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2386fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2387fa213d2fSHong Zhang offdiagA[r] = 0.0; 2388fa213d2fSHong Zhang 2389fa213d2fSHong Zhang /* Find first hole in the cmap */ 2390fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2391fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2392fa213d2fSHong Zhang if (col > j && j < cstart) { 2393fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2394fa213d2fSHong Zhang break; 2395fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2396fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2397fa213d2fSHong Zhang break; 2398fa213d2fSHong Zhang } 2399fa213d2fSHong Zhang } 24004e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2401fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2402fa213d2fSHong Zhang if (ncols == 0) { 2403fa213d2fSHong Zhang if (cstart) { 2404fa213d2fSHong Zhang offdiagIdx[r] = 0; 2405fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2406fa213d2fSHong Zhang } else { /* ncols > 0 */ 2407fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2408fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang } 2412fa213d2fSHong Zhang 2413fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24149371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24159371c9d4SSatish Balay offdiagA[r] = *ba; 24169371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24179371c9d4SSatish Balay } 24189371c9d4SSatish Balay ba++; 24199371c9d4SSatish Balay bj++; 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang } 2422fa213d2fSHong Zhang 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2425fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2426fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242703bc72f1SMatthew Knepley a[r] = diagA[r]; 2428fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2429fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2430fa213d2fSHong Zhang a[r] = diagA[r]; 2431fa213d2fSHong Zhang if (idx) { 2432fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243303bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2434fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2435fa213d2fSHong Zhang } 243603bc72f1SMatthew Knepley } else { 243703bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2438fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243903bc72f1SMatthew Knepley } 244003bc72f1SMatthew Knepley } 24419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24479566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244903bc72f1SMatthew Knepley } 245003bc72f1SMatthew Knepley 2451ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2452d71ae5a4SJacob Faibussowitsch { 2453c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24541a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24551a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2456c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2457c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2458c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2459ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2460ce496241SStefano Zampini const PetscScalar *ba, *bav; 24611a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24621a254869SHong Zhang Mat B = mat->B; 24631a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2464c87e5d42SMatthew Knepley 2465c87e5d42SMatthew Knepley PetscFunctionBegin; 24661a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24671a254869SHong Zhang if (A->cmap->N == n) { 24689566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24699566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24709566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24741a254869SHong Zhang } else if (n == 0) { 24751a254869SHong Zhang if (m) { 24769566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24779371c9d4SSatish Balay for (r = 0; r < m; r++) { 24789371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24799371c9d4SSatish Balay if (idx) idx[r] = -1; 24809371c9d4SSatish Balay } 24819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24821a254869SHong Zhang } 24833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24841a254869SHong Zhang } 24851a254869SHong Zhang 24869566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24889566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24899566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24901a254869SHong Zhang 24911a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2493ce496241SStefano Zampini ba = bav; 24941a254869SHong Zhang bi = b->i; 24951a254869SHong Zhang bj = b->j; 24969566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24971a254869SHong Zhang for (r = 0; r < m; r++) { 24981a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24991a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 25009371c9d4SSatish Balay offdiagA[r] = *ba; 25019371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25021a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25031a254869SHong Zhang offdiagA[r] = 0.0; 25041a254869SHong Zhang 25051a254869SHong Zhang /* Find first hole in the cmap */ 25061a254869SHong Zhang for (j = 0; j < ncols; j++) { 25071a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25081a254869SHong Zhang if (col > j && j < cstart) { 25091a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25101a254869SHong Zhang break; 25111a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25121a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25131a254869SHong Zhang break; 25141a254869SHong Zhang } 25151a254869SHong Zhang } 25164e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25171a254869SHong Zhang /* a hole is outside compressed Bcols */ 25181a254869SHong Zhang if (ncols == 0) { 25191a254869SHong Zhang if (cstart) { 25201a254869SHong Zhang offdiagIdx[r] = 0; 25211a254869SHong Zhang } else offdiagIdx[r] = cend; 25221a254869SHong Zhang } else { /* ncols > 0 */ 25231a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25241a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang } 25281a254869SHong Zhang 25291a254869SHong Zhang for (j = 0; j < ncols; j++) { 25309371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25319371c9d4SSatish Balay offdiagA[r] = *ba; 25329371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25339371c9d4SSatish Balay } 25349371c9d4SSatish Balay ba++; 25359371c9d4SSatish Balay bj++; 25361a254869SHong Zhang } 25371a254869SHong Zhang } 25381a254869SHong Zhang 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25411a254869SHong Zhang for (r = 0; r < m; ++r) { 25421a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2543c87e5d42SMatthew Knepley a[r] = diagA[r]; 25441a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25451a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25461a254869SHong Zhang a[r] = diagA[r]; 25471a254869SHong Zhang if (idx) { 25481a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2549c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25501a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25511a254869SHong Zhang } 2552c87e5d42SMatthew Knepley } else { 2553c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25541a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2555c87e5d42SMatthew Knepley } 2556c87e5d42SMatthew Knepley } 25579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25629566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25639566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2565c87e5d42SMatthew Knepley } 2566c87e5d42SMatthew Knepley 2567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2568d71ae5a4SJacob Faibussowitsch { 2569f6d58c54SBarry Smith Mat *dummy; 25705494a064SHong Zhang 25715494a064SHong Zhang PetscFunctionBegin; 25729566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2573f6d58c54SBarry Smith *newmat = *dummy; 25749566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25765494a064SHong Zhang } 25775494a064SHong Zhang 2578ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2579d71ae5a4SJacob Faibussowitsch { 2580bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2581bbead8a2SBarry Smith 2582bbead8a2SBarry Smith PetscFunctionBegin; 25839566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25847b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2586bbead8a2SBarry Smith } 2587bbead8a2SBarry Smith 2588d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2589d71ae5a4SJacob Faibussowitsch { 259073a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259173a71a0fSBarry Smith 259273a71a0fSBarry Smith PetscFunctionBegin; 259308401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25949566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2595679944adSJunchao Zhang if (x->assembled) { 25969566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2597679944adSJunchao Zhang } else { 25989566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2599679944adSJunchao Zhang } 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260373a71a0fSBarry Smith } 2604bbead8a2SBarry Smith 2605ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2606d71ae5a4SJacob Faibussowitsch { 2607b1b1104fSBarry Smith PetscFunctionBegin; 2608b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2609b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2611b1b1104fSBarry Smith } 2612b1b1104fSBarry Smith 2613b1b1104fSBarry Smith /*@ 2614f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2615f2afee66SBarry Smith 26162ef1f0ffSBarry Smith Not Collective 2617f2afee66SBarry Smith 2618f2afee66SBarry Smith Input Parameter: 2619f2afee66SBarry Smith . A - the matrix 2620f2afee66SBarry Smith 2621f2afee66SBarry Smith Output Parameter: 2622f2afee66SBarry Smith . nz - the number of nonzeros 2623f2afee66SBarry Smith 2624f2afee66SBarry Smith Level: advanced 2625f2afee66SBarry Smith 2626fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2627f2afee66SBarry Smith @*/ 2628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2629d71ae5a4SJacob Faibussowitsch { 2630f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2631f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2632dfebb78cSStefano Zampini PetscBool isaij; 2633f2afee66SBarry Smith 2634f2afee66SBarry Smith PetscFunctionBegin; 2635dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2636dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2637f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2639f2afee66SBarry Smith } 2640f2afee66SBarry Smith 2641f2afee66SBarry Smith /*@ 2642b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2643b1b1104fSBarry Smith 2644c3339decSBarry Smith Collective 2645b1b1104fSBarry Smith 2646b1b1104fSBarry Smith Input Parameters: 2647b1b1104fSBarry Smith + A - the matrix 264811a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2649b1b1104fSBarry Smith 265096a0c994SBarry Smith Level: advanced 265196a0c994SBarry Smith 2652fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2653b1b1104fSBarry Smith @*/ 2654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2655d71ae5a4SJacob Faibussowitsch { 2656b1b1104fSBarry Smith PetscFunctionBegin; 2657cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2659b1b1104fSBarry Smith } 2660b1b1104fSBarry Smith 2661ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2662d71ae5a4SJacob Faibussowitsch { 2663b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2664b1b1104fSBarry Smith 2665b1b1104fSBarry Smith PetscFunctionBegin; 2666d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2667b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26689566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26691baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2670d0609cedSBarry Smith PetscOptionsHeadEnd(); 26713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2672b1b1104fSBarry Smith } 2673b1b1104fSBarry Smith 2674ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2675d71ae5a4SJacob Faibussowitsch { 26767d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2677c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26787d68702bSBarry Smith 26797d68702bSBarry Smith PetscFunctionBegin; 2680c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26819566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26825519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2683b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2685b83222d8SBarry Smith aij->nonew = nonew; 26867d68702bSBarry Smith } 26879566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26897d68702bSBarry Smith } 26907d68702bSBarry Smith 2691ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2692d71ae5a4SJacob Faibussowitsch { 2693a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2694a8ee9fb5SBarry Smith 2695a8ee9fb5SBarry Smith PetscFunctionBegin; 26969566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 26973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2698a8ee9fb5SBarry Smith } 26993b49f96aSBarry Smith 270058c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2701dec0b466SHong Zhang { 2702dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2703dec0b466SHong Zhang 2704dec0b466SHong Zhang PetscFunctionBegin; 270558c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 270658c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2708dec0b466SHong Zhang } 2709dec0b466SHong Zhang 2710cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2711cda55fadSBarry Smith MatGetRow_MPIAIJ, 2712cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2713cda55fadSBarry Smith MatMult_MPIAIJ, 271497304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27157c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27167c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2717f4259b30SLisandro Dalcin NULL, 2718f4259b30SLisandro Dalcin NULL, 2719f4259b30SLisandro Dalcin NULL, 2720f4259b30SLisandro Dalcin /*10*/ NULL, 2721f4259b30SLisandro Dalcin NULL, 2722f4259b30SLisandro Dalcin NULL, 272341f059aeSBarry Smith MatSOR_MPIAIJ, 2724b7c46309SBarry Smith MatTranspose_MPIAIJ, 272597304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2726cda55fadSBarry Smith MatEqual_MPIAIJ, 2727cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2728cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2729cda55fadSBarry Smith MatNorm_MPIAIJ, 273097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2731cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2732cda55fadSBarry Smith MatSetOption_MPIAIJ, 2733cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2734d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 2737f4259b30SLisandro Dalcin NULL, 2738f4259b30SLisandro Dalcin NULL, 273926cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2740f4259b30SLisandro Dalcin NULL, 2741f4259b30SLisandro Dalcin NULL, 2742a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2743f4259b30SLisandro Dalcin NULL, 2744d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2745f4259b30SLisandro Dalcin NULL, 2746f4259b30SLisandro Dalcin NULL, 2747f4259b30SLisandro Dalcin NULL, 2748f4259b30SLisandro Dalcin NULL, 2749d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27507dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2751cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2752cda55fadSBarry Smith MatGetValues_MPIAIJ, 2753cb5b572fSBarry Smith MatCopy_MPIAIJ, 2754d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2755cda55fadSBarry Smith MatScale_MPIAIJ, 27567d68702bSBarry Smith MatShift_MPIAIJ, 275799e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2758564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 275973a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27608a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27618a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2762f4259b30SLisandro Dalcin NULL, 2763f4259b30SLisandro Dalcin NULL, 276493dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2765f4259b30SLisandro Dalcin NULL, 2766cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 276772e6a0cfSJed Brown MatPermute_MPIAIJ, 2768f4259b30SLisandro Dalcin NULL, 27697dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2770e03a110bSBarry Smith MatDestroy_MPIAIJ, 2771e03a110bSBarry Smith MatView_MPIAIJ, 2772f4259b30SLisandro Dalcin NULL, 2773f4259b30SLisandro Dalcin NULL, 27748bb0f5c6SPierre Jolivet /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2775f4259b30SLisandro Dalcin NULL, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 27788bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIAIJ, 27798bb0f5c6SPierre Jolivet /*69*/ MatGetRowMinAbs_MPIAIJ, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 27828bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, 2783b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2784f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 27858bb0f5c6SPierre Jolivet /*75*/ NULL, 27868bb0f5c6SPierre Jolivet NULL, 27878bb0f5c6SPierre Jolivet NULL, 27888bb0f5c6SPierre Jolivet MatLoad_MPIAIJ, 27898bb0f5c6SPierre Jolivet NULL, 2790f4259b30SLisandro Dalcin /*80*/ NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 27938bb0f5c6SPierre Jolivet /*83*/ NULL, 2794f4259b30SLisandro Dalcin NULL, 279526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 27968bb0f5c6SPierre Jolivet MatPtAPNumeric_MPIAIJ_MPIAIJ, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27998bb0f5c6SPierre Jolivet /*89*/ MatBindToCPU_MPIAIJ, 28008bb0f5c6SPierre Jolivet MatProductSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 28032fd7e33dSBarry Smith MatConjugate_MPIAIJ, 28048bb0f5c6SPierre Jolivet /*94*/ NULL, 28058bb0f5c6SPierre Jolivet MatSetValuesRow_MPIAIJ, 280699cafbc1SBarry Smith MatRealPart_MPIAIJ, 280769db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2808f4259b30SLisandro Dalcin NULL, 28098bb0f5c6SPierre Jolivet /*99*/ NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 28125494a064SHong Zhang MatGetRowMin_MPIAIJ, 2813f4259b30SLisandro Dalcin NULL, 2814421480d9SBarry Smith /*104*/ MatGetSeqNonzeroStructure_MPIAIJ, 2815f4259b30SLisandro Dalcin NULL, 2816c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2817f4259b30SLisandro Dalcin NULL, 2818421480d9SBarry Smith NULL, 2819421480d9SBarry Smith /*109*/ MatMultDiagonalBlock_MPIAIJ, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822f4259b30SLisandro Dalcin NULL, 2823421480d9SBarry Smith MatGetMultiProcBlock_MPIAIJ, 2824421480d9SBarry Smith /*114*/ MatFindNonzeroRows_MPIAIJ, 2825a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2826bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2827a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 2828421480d9SBarry Smith MatCreateSubMatricesMPI_MPIAIJ, 2829421480d9SBarry Smith /*119*/ NULL, 2830f4259b30SLisandro Dalcin NULL, 2831187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin NULL, 2834421480d9SBarry Smith /*124*/ NULL, 2835f4259b30SLisandro Dalcin NULL, 28368bb0f5c6SPierre Jolivet MatSetBlockSizes_MPIAIJ, 2837f4259b30SLisandro Dalcin NULL, 2838421480d9SBarry Smith MatFDColoringSetUp_MPIXAIJ, 2839421480d9SBarry Smith /*129*/ MatFindOffBlockDiagonalEntries_MPIAIJ, 28404222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 284272833a62Smarkadams4 NULL, 2843421480d9SBarry Smith NULL, 2844421480d9SBarry Smith /*134*/ MatCreateGraph_Simple_AIJ, 28452d776b49SBarry Smith NULL, 2846eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28474cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 284842ce410bSJunchao Zhang NULL, 2849421480d9SBarry Smith /*139*/ NULL, 285042ce410bSJunchao Zhang NULL, 285103db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 2852c2be7ffeSStefano Zampini MatGetCurrentMemType_MPIAIJ, 2853c2be7ffeSStefano Zampini NULL}; 285436ce4990SBarry Smith 2855ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2856d71ae5a4SJacob Faibussowitsch { 28572e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28582e8a6d31SBarry Smith 28592e8a6d31SBarry Smith PetscFunctionBegin; 28609566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28619566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28632e8a6d31SBarry Smith } 28642e8a6d31SBarry Smith 2865ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2866d71ae5a4SJacob Faibussowitsch { 28672e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28682e8a6d31SBarry Smith 28692e8a6d31SBarry Smith PetscFunctionBegin; 28709566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28719566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28732e8a6d31SBarry Smith } 28748a729477SBarry Smith 2875d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2876d71ae5a4SJacob Faibussowitsch { 2877ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28785d2a9ed1SStefano Zampini PetscMPIInt size; 2879a23d5eceSKris Buschelman 2880a23d5eceSKris Buschelman PetscFunctionBegin; 2881ad79cf63SBarry Smith if (B->hash_active) { 2882aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2883ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2884ad79cf63SBarry Smith } 28859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2887899cda47SBarry Smith 2888cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2889eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2890cb7b82ddSBarry Smith #else 28919566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2892cb7b82ddSBarry Smith #endif 28939566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 28949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 28959566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2896cb7b82ddSBarry Smith 28979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2898c508b908SBarry Smith 2899c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29019566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29049566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2905c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2906cb7b82ddSBarry Smith 2907c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2908ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29099566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29119566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29129566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2913c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2914899cda47SBarry Smith 29159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2917526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2918cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 291915001458SStefano Zampini B->assembled = PETSC_FALSE; 29203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2921a23d5eceSKris Buschelman } 2922a23d5eceSKris Buschelman 2923ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2924d71ae5a4SJacob Faibussowitsch { 2925ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29264c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2927846b4da1SFande Kong 2928846b4da1SFande Kong PetscFunctionBegin; 2929846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29304c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29314c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29324c51d546SAlexander 29334c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29344c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29354c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 29365440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29374c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29384c51d546SAlexander 29399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29414c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29424c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29439566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2944846b4da1SFande Kong 2945846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2946846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2947846b4da1SFande Kong B->assembled = PETSC_FALSE; 2948b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2949b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2951846b4da1SFande Kong } 2952846b4da1SFande Kong 2953d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2954d71ae5a4SJacob Faibussowitsch { 2955d6dfbf8fSBarry Smith Mat mat; 2956416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2957d6dfbf8fSBarry Smith 29583a40ed3dSBarry Smith PetscFunctionBegin; 2959f4259b30SLisandro Dalcin *newmat = NULL; 29609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29629566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29639566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2964273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2965e1b6402fSHong Zhang 2966d5f3da31SBarry Smith mat->factortype = matin->factortype; 2967501880eeSStefano Zampini mat->assembled = matin->assembled; 2968e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2969d6dfbf8fSBarry Smith 297017699dbbSLois Curfman McInnes a->size = oldmat->size; 297117699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2972e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2973e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2974501880eeSStefano Zampini a->rowindices = NULL; 2975501880eeSStefano Zampini a->rowvalues = NULL; 2976bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2977d6dfbf8fSBarry Smith 29789566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29799566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2980420957c1SBarry Smith if (matin->hash_active) { 2981420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2982420957c1SBarry Smith } else { 2983420957c1SBarry Smith mat->preallocated = matin->preallocated; 29842ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2985aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2986eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2987b1fc9764SSatish Balay #else 29889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 29899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 2990b1fc9764SSatish Balay #endif 2991501880eeSStefano Zampini } else a->colmap = NULL; 29923f41c07dSBarry Smith if (oldmat->garray) { 2993b1d57f15SBarry Smith PetscInt len; 2994d0f46423SBarry Smith len = oldmat->B->cmap->n; 299584648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &a->garray)); 29969566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2997501880eeSStefano Zampini } else a->garray = NULL; 2998d6dfbf8fSBarry Smith 29990de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30000de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30010de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3002aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3003cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3004cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3005cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3006cff58d65SJunchao Zhang } 30079566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30089566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3009420957c1SBarry Smith } 30109566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30118a729477SBarry Smith *newmat = mat; 30123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30138a729477SBarry Smith } 3014416022c9SBarry Smith 3015d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3016d71ae5a4SJacob Faibussowitsch { 301752f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 301852f91c60SVaclav Hapla 301952f91c60SVaclav Hapla PetscFunctionBegin; 302052f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 302152f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3022c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30239566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 302652f91c60SVaclav Hapla if (isbinary) { 30279566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 302852f91c60SVaclav Hapla } else if (ishdf5) { 302952f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30309566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 303152f91c60SVaclav Hapla #else 303252f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 303352f91c60SVaclav Hapla #endif 303452f91c60SVaclav Hapla } else { 303598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 303652f91c60SVaclav Hapla } 30373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 303852f91c60SVaclav Hapla } 303952f91c60SVaclav Hapla 3040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3041d71ae5a4SJacob Faibussowitsch { 30423ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30433ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30443ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30458fb81238SShri Abhyankar 30468fb81238SShri Abhyankar PetscFunctionBegin; 30479566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30488fb81238SShri Abhyankar 30493ea6fe3dSLisandro Dalcin /* read in matrix header */ 30509566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 305108401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30529371c9d4SSatish Balay M = header[1]; 30539371c9d4SSatish Balay N = header[2]; 30549371c9d4SSatish Balay nz = header[3]; 305508401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 305608401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 305708401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 305808ea439dSMark F. Adams 30593ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30609566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30613ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30623ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30633ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30668fb81238SShri Abhyankar 30673ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30689566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3069aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30708fb81238SShri Abhyankar 30713ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30729566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30749566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30759371c9d4SSatish Balay rowidxs[0] = 0; 30769371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30771690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3078462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 307908401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 308038b83642SBarry Smith } 308138b83642SBarry Smith 30823ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30849566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30859566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30863ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30879566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30889566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30899566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30918fb81238SShri Abhyankar } 30928fb81238SShri Abhyankar 30933782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3094ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3095d71ae5a4SJacob Faibussowitsch { 30964aa3045dSJed Brown IS iscol_local; 3097c5e4d11fSDmitry Karpeev PetscBool isstride; 30989725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 30993782ecc7SHong Zhang 31003782ecc7SHong Zhang PetscFunctionBegin; 31013782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31033782ecc7SHong Zhang 3104c5e4d11fSDmitry Karpeev if (isstride) { 3105c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31069566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31089566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31099725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3110c5e4d11fSDmitry Karpeev } 31113782ecc7SHong Zhang 31129725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3113c5e4d11fSDmitry Karpeev if (gisstride) { 3114c5e4d11fSDmitry Karpeev PetscInt N; 31159566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31169566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31179566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31189566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3119c5e4d11fSDmitry Karpeev } else { 3120c5bfad50SMark F. Adams PetscInt cbs; 31219566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31229566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31239566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3124b79d0421SJed Brown } 31253782ecc7SHong Zhang 31263782ecc7SHong Zhang *isseq = iscol_local; 31273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3128c5e4d11fSDmitry Karpeev } 31298d2139bdSHong Zhang 3130ddfdf956SHong Zhang /* 31319c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31329c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3133ddfdf956SHong Zhang 3134ddfdf956SHong Zhang Input Parameters: 313527430b45SBarry Smith + mat - matrix 313627430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31379c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 313827430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3139ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 314027430b45SBarry Smith 314127430b45SBarry Smith Output Parameters: 314227430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 314327430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 314427430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 314527430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3146ddfdf956SHong Zhang */ 3147835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3148d71ae5a4SJacob Faibussowitsch { 3149040216a4SHong Zhang Vec x, cmap; 3150040216a4SHong Zhang const PetscInt *is_idx; 3151040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31529c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3153040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3154040216a4SHong Zhang Mat B = a->B; 3155040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3156a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31578b3fa1f7SHong Zhang MPI_Comm comm; 31583a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31593782ecc7SHong Zhang 31603782ecc7SHong Zhang PetscFunctionBegin; 31619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31638b3fa1f7SHong Zhang 3164ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31659566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31669566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31679566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31689566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31690a351717SHong Zhang 31709c988bcaSHong Zhang /* Get start indices */ 31719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3172ddfdf956SHong Zhang isstart -= ncols; 31739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3174040216a4SHong Zhang 31759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31769566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31779566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3179ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31808b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3181ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31829c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31838b3fa1f7SHong Zhang } 31849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31878b3fa1f7SHong Zhang 31889c988bcaSHong Zhang /* Get iscol_d */ 31899566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31909566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 31919566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3192feb78a15SHong Zhang 31939c988bcaSHong Zhang /* Get isrow_d */ 31949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3195feb78a15SHong Zhang rstart = mat->rmap->rstart; 31969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 31979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 31989c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 31999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3200feb78a15SHong Zhang 32019566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32029566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32039566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3204feb78a15SHong Zhang 32059c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3208ddfdf956SHong Zhang 32099566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 321007250d77SHong Zhang 32119566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32129566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 321364efcef9SHong Zhang 32149c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3215ddfdf956SHong Zhang /* off-process column indices */ 32169c988bcaSHong Zhang count = 0; 32179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3219feb78a15SHong Zhang 32209566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32219566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32228b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3223f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32249c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32251c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32261c645242SHong Zhang count++; 32278b3fa1f7SHong Zhang } 32288b3fa1f7SHong Zhang } 32299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 323107250d77SHong Zhang 32329566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3233b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3234b6d9b4e0SHong Zhang 32359566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32369c988bcaSHong Zhang *garray = cmap1; 32379c988bcaSHong Zhang 32389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3242040216a4SHong Zhang } 3243040216a4SHong Zhang 3244b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3246d71ae5a4SJacob Faibussowitsch { 3247b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32481fd43edeSHong Zhang Mat M = NULL; 32493b00a383SHong Zhang MPI_Comm comm; 3250b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32513b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3252c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32533b00a383SHong Zhang 32543b00a383SHong Zhang PetscFunctionBegin; 32559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32563b00a383SHong Zhang 32573b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3258b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 326028b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32613b00a383SHong Zhang 32629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 326328b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32643b00a383SHong Zhang 32659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 326628b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32673b00a383SHong Zhang 3268b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3269b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 327248a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32753b00a383SHong Zhang 32763b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3277c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3278b20e2604SHong Zhang PetscInt BsubN; 32793b00a383SHong Zhang 3280b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32819566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32823b00a383SHong Zhang 3283b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32859566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32863b00a383SHong Zhang 3287c0c276a7Ssdargavi // Compact garray so its not of size Bn 3288c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3289c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3290c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3291c0c276a7Ssdargavi 32929c988bcaSHong Zhang /* Create submatrix M */ 3293c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3294c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3295c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 32963b00a383SHong Zhang 3297b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3298b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 32997cfce09cSHong Zhang 33009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3301b20e2604SHong Zhang n = asub->B->cmap->N; 3302b20e2604SHong Zhang if (BsubN > n) { 3303c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33047cfce09cSHong Zhang const PetscInt *idx; 33059c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33069566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33077cfce09cSHong Zhang 33089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33097cfce09cSHong Zhang j = 0; 33109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3311b20e2604SHong Zhang for (i = 0; i < n; i++) { 33127cfce09cSHong Zhang if (j >= BsubN) break; 33139c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33147cfce09cSHong Zhang 3315966bd95aSPierre Jolivet PetscCheck(subgarray[i] == garray[j], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33167cfce09cSHong Zhang idx_new[i] = idx[j++]; 33177cfce09cSHong Zhang } 33189566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33197cfce09cSHong Zhang 33209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33227cfce09cSHong Zhang 3323966bd95aSPierre Jolivet } else PetscCheck(BsubN >= n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 33247cfce09cSHong Zhang 33259566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3326b20e2604SHong Zhang *submat = M; 33273b00a383SHong Zhang 3328e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33299566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33313b00a383SHong Zhang 33329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33343b00a383SHong Zhang 33359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33373b00a383SHong Zhang } 33383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33393b00a383SHong Zhang } 33403b00a383SHong Zhang 3341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3342d71ae5a4SJacob Faibussowitsch { 33431358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33443782ecc7SHong Zhang PetscInt csize; 334518e627e3SHong Zhang PetscInt n, i, j, start, end; 33464a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33473782ecc7SHong Zhang MPI_Comm comm; 33483782ecc7SHong Zhang 33493782ecc7SHong Zhang PetscFunctionBegin; 3350bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3351a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33528f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3354d5761cdaSHong Zhang if (isrow_d) { 3355d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3356d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3357d5761cdaSHong Zhang } else { 33589566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3359d5761cdaSHong Zhang if (iscol_local) { 3360d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3361d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3362d5761cdaSHong Zhang } 3363d5761cdaSHong Zhang } 33648f69fa7bSHong Zhang } else { 3365e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 336618e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33683782ecc7SHong Zhang if (!n) { 336918e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33703782ecc7SHong Zhang } else { 33719566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33729566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3373ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33748f69fa7bSHong Zhang } 33753782ecc7SHong Zhang 3376e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 337718e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 337918e627e3SHong Zhang if (!n) { 338018e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 338118e627e3SHong Zhang } else { 33829566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 338418e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 338518e627e3SHong Zhang } 338618e627e3SHong Zhang 33879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33885440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPI_C_BOOL, MPI_LAND, comm)); 338918e627e3SHong Zhang sameRowDist = tsameDist[0]; 339018e627e3SHong Zhang } 339118e627e3SHong Zhang 339218e627e3SHong Zhang if (sameRowDist) { 3393b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33943b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 33959566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 33963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3397b20e2604SHong Zhang } else { /* sameRowDist */ 33983b00a383SHong Zhang /* isrow has same processor distribution as mat */ 33991358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34001358a193SHong Zhang PetscBool sorted; 34019566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34039566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 340408401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34051358a193SHong Zhang 34069566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34071358a193SHong Zhang if (sorted) { 34081358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34113782ecc7SHong Zhang } 34121358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 341348c0d076SHong Zhang IS iscol_sub; 34149566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 341548c0d076SHong Zhang if (iscol_sub) { 34169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 341848c0d076SHong Zhang } 34191358a193SHong Zhang } 34201358a193SHong Zhang } 34211358a193SHong Zhang } 34223782ecc7SHong Zhang 3423bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34243782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34259566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 342628b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34273782ecc7SHong Zhang } else { 342848a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34291358a193SHong Zhang } 34303782ecc7SHong Zhang 34319566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34338f69fa7bSHong Zhang 3434b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3437b79d0421SJed Brown } 34383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34394aa3045dSJed Brown } 34404aa3045dSJed Brown 3441feb78a15SHong Zhang /*@C 344211a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3443feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3444feb78a15SHong Zhang 3445d083f849SBarry Smith Collective 3446feb78a15SHong Zhang 3447feb78a15SHong Zhang Input Parameters: 3448feb78a15SHong Zhang + comm - MPI communicator 3449c0c276a7Ssdargavi . M - the global row size 3450c0c276a7Ssdargavi . N - the global column size 3451feb78a15SHong Zhang . A - "diagonal" portion of matrix 3452c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3453a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter. 3454feb78a15SHong Zhang 3455feb78a15SHong Zhang Output Parameter: 34562ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 345727430b45SBarry Smith 3458feb78a15SHong Zhang Level: advanced 3459feb78a15SHong Zhang 3460feb78a15SHong Zhang Notes: 346111a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346211a5261eSBarry Smith 3463c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3464feb78a15SHong Zhang 3465a3156c1cSJunchao Zhang If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update 3466a3156c1cSJunchao Zhang `B`'s copy on device. We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or 3467a3156c1cSJunchao Zhang `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray` 3468a3156c1cSJunchao Zhang yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`. 3469a3156c1cSJunchao Zhang 3470b1dff882SJunchao Zhang The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others. 3471b1dff882SJunchao Zhang 34721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3473feb78a15SHong Zhang @*/ 3474c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3475d71ae5a4SJacob Faibussowitsch { 3476c0c276a7Ssdargavi PetscInt m, n; 34774ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3478f18d1d10SJunchao Zhang Mat_MPIAIJ *mpiaij; 3479f18d1d10SJunchao Zhang Mat C; 3480feb78a15SHong Zhang 3481feb78a15SHong Zhang PetscFunctionBegin; 3482f18d1d10SJunchao Zhang PetscCall(MatCreate(comm, &C)); 34839566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348408401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348558b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3486feb78a15SHong Zhang 3487f18d1d10SJunchao Zhang PetscCall(MatSetSizes(C, m, n, M, N)); 34884ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34894ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 3490f18d1d10SJunchao Zhang PetscCall(MatSetType(C, mpi_mat_type)); 3491a3156c1cSJunchao Zhang if (!garray) { 3492a3156c1cSJunchao Zhang const PetscScalar *ba; 3493a3156c1cSJunchao Zhang 3494a3156c1cSJunchao Zhang B->nonzerostate++; 3495a3156c1cSJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */ 3496a3156c1cSJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3497a3156c1cSJunchao Zhang } 34984ab4d6f4SRichard Tran Mills 3499f18d1d10SJunchao Zhang PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs)); 3500f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->rmap)); 3501f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->cmap)); 3502feb78a15SHong Zhang 3503f18d1d10SJunchao Zhang mpiaij = (Mat_MPIAIJ *)C->data; 3504c0c276a7Ssdargavi mpiaij->A = A; 3505c0c276a7Ssdargavi mpiaij->B = B; 3506c0c276a7Ssdargavi mpiaij->garray = garray; 3507f18d1d10SJunchao Zhang C->preallocated = PETSC_TRUE; 3508f18d1d10SJunchao Zhang C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3509c0c276a7Ssdargavi 3510f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3511f18d1d10SJunchao Zhang PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3512c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3513c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3514c0c276a7Ssdargavi */ 3515f18d1d10SJunchao Zhang PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3516f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3517f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 3518f18d1d10SJunchao Zhang *mat = C; 35193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3520feb78a15SHong Zhang } 3521feb78a15SHong Zhang 3522ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35234aa3045dSJed Brown 3524d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3525d71ae5a4SJacob Faibussowitsch { 352698b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 352785f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 352898b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35291fd43edeSHong Zhang Mat M, Msub, B = a->B; 353098b658c4SHong Zhang MatScalar *aa; 353100e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3532a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 353398b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 353498b658c4SHong Zhang IS iscol_sub, iscmap; 353598b658c4SHong Zhang const PetscInt *is_idx, *cmap; 353618e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3537a31a438cSHong Zhang MPI_Comm comm; 35387e2c5f70SBarry Smith 3539a0ff6018SBarry Smith PetscFunctionBegin; 35409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3541d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35429566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 354328b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3545d5761cdaSHong Zhang 35469566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 354728b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3548d5761cdaSHong Zhang 35499566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 355028b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3551d5761cdaSHong Zhang 35529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3553d5761cdaSHong Zhang 3554d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35553b00a383SHong Zhang PetscBool flg; 35563b00a383SHong Zhang 35579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35589566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3559bcae8d28SHong Zhang 35603b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3561366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35629566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3563366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35645440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3565366a327dSHong Zhang if (allcolumns) { 3566366a327dSHong Zhang iscol_sub = iscol_local; 35679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35689566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3569366a327dSHong Zhang 35703b00a383SHong Zhang } else { 35711358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3572244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35768d2139bdSHong Zhang count = 0; 3577a31a438cSHong Zhang k = 0; 3578a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3579a31a438cSHong Zhang j = is_idx[i]; 3580a31a438cSHong Zhang if (j >= cstart && j < cend) { 3581a31a438cSHong Zhang /* diagonal part of mat */ 35828d2139bdSHong Zhang idx[count] = j; 3583366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 35844a3daf6eSHong Zhang } else if (Bn) { 3585a31a438cSHong Zhang /* off-diagonal part of mat */ 3586a31a438cSHong Zhang if (j == garray[k]) { 35878d2139bdSHong Zhang idx[count] = j; 3588a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3589a31a438cSHong Zhang } else if (j > garray[k]) { 3590a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3591a31a438cSHong Zhang if (j == garray[k]) { 3592a31a438cSHong Zhang idx[count] = j; 3593a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 35948d2139bdSHong Zhang } 35958d2139bdSHong Zhang } 35968d2139bdSHong Zhang } 35978d2139bdSHong Zhang } 35989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 35998d2139bdSHong Zhang 36009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36019566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36029566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3603b6d9b4e0SHong Zhang 36049566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3605a31a438cSHong Zhang } 36068b3fa1f7SHong Zhang 36073b00a383SHong Zhang /* (3) Create sequential Msub */ 36089566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3609d5761cdaSHong Zhang } 36108d2139bdSHong Zhang 36119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 361257508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 361398b658c4SHong Zhang ii = aij->i; 36149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3615a0ff6018SBarry Smith 3616a0ff6018SBarry Smith /* 3617a0ff6018SBarry Smith m - number of local rows 3618a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3619a0ff6018SBarry Smith rstart - first row in new global matrix generated 3620a0ff6018SBarry Smith */ 36219566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 362298b658c4SHong Zhang 36233b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36243b00a383SHong Zhang /* (4) Create parallel newmat */ 362598b658c4SHong Zhang PetscMPIInt rank, size; 3626bcae8d28SHong Zhang PetscInt csize; 362798b658c4SHong Zhang 36289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 363000e6dbe6SBarry Smith 3631a0ff6018SBarry Smith /* 363200e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 363300e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3634a0ff6018SBarry Smith */ 363500e6dbe6SBarry Smith 363600e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36386a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36399566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3640a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3641e2c4fddaSBarry Smith nlocal = m; 36426a6a5d1dSBarry Smith } else { 3643a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3644ab50ec6bSBarry Smith } 3645ab50ec6bSBarry Smith } else { 36466a6a5d1dSBarry Smith nlocal = csize; 36476a6a5d1dSBarry Smith } 36489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 364900e6dbe6SBarry Smith rstart = rend - nlocal; 3650aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 365100e6dbe6SBarry Smith 365200e6dbe6SBarry Smith /* next, compute all the lengths */ 365398b658c4SHong Zhang jj = aij->j; 36549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 365500e6dbe6SBarry Smith olens = dlens + m; 365600e6dbe6SBarry Smith for (i = 0; i < m; i++) { 365700e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 365800e6dbe6SBarry Smith olen = 0; 365900e6dbe6SBarry Smith dlen = 0; 366000e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 366115b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 366200e6dbe6SBarry Smith else dlen++; 366300e6dbe6SBarry Smith jj++; 366400e6dbe6SBarry Smith } 366500e6dbe6SBarry Smith olens[i] = olen; 366600e6dbe6SBarry Smith dlens[i] = dlen; 366700e6dbe6SBarry Smith } 3668b6d9b4e0SHong Zhang 36699566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36709566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 367198b658c4SHong Zhang 36729566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36749566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36759566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36779566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3678d5761cdaSHong Zhang 3679d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3680a0ff6018SBarry Smith M = *newmat; 36819566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 368208401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36839566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3684c48de900SBarry Smith /* 3685c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3686c48de900SBarry Smith rather than the slower MatSetValues(). 3687c48de900SBarry Smith */ 3688c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3689c48de900SBarry Smith M->assembled = PETSC_FALSE; 3690a0ff6018SBarry Smith } 3691548ecf4dSHong Zhang 36923b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 36939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 36949566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 369598b658c4SHong Zhang 369698b658c4SHong Zhang jj = aij->j; 36979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3698a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3699a0ff6018SBarry Smith row = rstart + i; 370000e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 370115b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37029566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37039371c9d4SSatish Balay jj += nz; 37049371c9d4SSatish Balay aa += nz; 3705a0ff6018SBarry Smith } 37069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3708a0ff6018SBarry Smith 37099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3711fee21e36SBarry Smith 37129566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 371398b658c4SHong Zhang 371498b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3715fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37163b00a383SHong Zhang *newmat = M; 3717f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 371998b658c4SHong Zhang 3720f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 372298b658c4SHong Zhang 3723f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3725bcae8d28SHong Zhang 3726bcae8d28SHong Zhang if (iscol_local) { 3727f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3729bcae8d28SHong Zhang } 373098b658c4SHong Zhang } 37313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3732a0ff6018SBarry Smith } 3733273d9f13SBarry Smith 3734df40acb1SHong Zhang /* 3735df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3736df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3737df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3738df40acb1SHong Zhang 373911a5261eSBarry Smith This requires a sequential iscol with all indices. 3740df40acb1SHong Zhang */ 3741d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3742d71ae5a4SJacob Faibussowitsch { 3743df40acb1SHong Zhang PetscMPIInt rank, size; 3744df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3745df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3746df40acb1SHong Zhang Mat M, Mreuse; 374798b658c4SHong Zhang MatScalar *aa, *vwork; 3748df40acb1SHong Zhang MPI_Comm comm; 3749df40acb1SHong Zhang Mat_SeqAIJ *aij; 37500b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3751df40acb1SHong Zhang 3752df40acb1SHong Zhang PetscFunctionBegin; 37539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3756df40acb1SHong Zhang 37570b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37589566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37600b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37615440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37620b27a90eSHong Zhang 3763df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 376528b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37669566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3767df40acb1SHong Zhang } else { 37689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3769df40acb1SHong Zhang } 3770df40acb1SHong Zhang 3771df40acb1SHong Zhang /* 3772df40acb1SHong Zhang m - number of local rows 3773df40acb1SHong Zhang n - number of columns (same on all processors) 3774df40acb1SHong Zhang rstart - first row in new global matrix generated 3775df40acb1SHong Zhang */ 37769566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37779566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3778df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 377957508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3780df40acb1SHong Zhang ii = aij->i; 3781df40acb1SHong Zhang jj = aij->j; 3782df40acb1SHong Zhang 3783df40acb1SHong Zhang /* 3784df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3785df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3786df40acb1SHong Zhang */ 3787df40acb1SHong Zhang 3788df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3789df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 37909566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3791df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3792df40acb1SHong Zhang nlocal = m; 3793df40acb1SHong Zhang } else { 3794df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3795df40acb1SHong Zhang } 3796df40acb1SHong Zhang } else { 3797df40acb1SHong Zhang nlocal = csize; 3798df40acb1SHong Zhang } 37999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3800df40acb1SHong Zhang rstart = rend - nlocal; 3801aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3802df40acb1SHong Zhang 3803df40acb1SHong Zhang /* next, compute all the lengths */ 38049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3805df40acb1SHong Zhang olens = dlens + m; 3806df40acb1SHong Zhang for (i = 0; i < m; i++) { 3807df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3808df40acb1SHong Zhang olen = 0; 3809df40acb1SHong Zhang dlen = 0; 3810df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3811df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3812df40acb1SHong Zhang else dlen++; 3813df40acb1SHong Zhang jj++; 3814df40acb1SHong Zhang } 3815df40acb1SHong Zhang olens[i] = olen; 3816df40acb1SHong Zhang dlens[i] = dlen; 3817df40acb1SHong Zhang } 38189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38209566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38219566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38239566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3824df40acb1SHong Zhang } else { 3825df40acb1SHong Zhang PetscInt ml, nl; 3826df40acb1SHong Zhang 3827df40acb1SHong Zhang M = *newmat; 38289566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 382908401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38309566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3831df40acb1SHong Zhang /* 3832df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3833df40acb1SHong Zhang rather than the slower MatSetValues(). 3834df40acb1SHong Zhang */ 3835df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3836df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3837df40acb1SHong Zhang } 38389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 383957508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3840df40acb1SHong Zhang ii = aij->i; 3841df40acb1SHong Zhang jj = aij->j; 38422e5835c6SStefano Zampini 38432e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3845df40acb1SHong Zhang for (i = 0; i < m; i++) { 3846df40acb1SHong Zhang row = rstart + i; 3847df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38489371c9d4SSatish Balay cwork = jj; 38498e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38509371c9d4SSatish Balay vwork = aa; 38518e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38529566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3853df40acb1SHong Zhang } 38549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3855df40acb1SHong Zhang 38569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3858df40acb1SHong Zhang *newmat = M; 3859df40acb1SHong Zhang 3860df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3861df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38629566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3864df40acb1SHong Zhang } 38653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3866df40acb1SHong Zhang } 3867df40acb1SHong Zhang 3868ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3869d71ae5a4SJacob Faibussowitsch { 38706a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38719f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3872ccd8e176SBarry Smith const PetscInt *JJ; 3873eeb24464SBarry Smith PetscBool nooffprocentries; 38746a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3875ccd8e176SBarry Smith 3876ccd8e176SBarry Smith PetscFunctionBegin; 38779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3879d0f46423SBarry Smith m = B->rmap->n; 3880d0f46423SBarry Smith cstart = B->cmap->rstart; 3881d0f46423SBarry Smith cend = B->cmap->rend; 3882d0f46423SBarry Smith rstart = B->rmap->rstart; 38839f0612e4SBarry Smith irstart = Ii[0]; 3884899cda47SBarry Smith 38859566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3886ccd8e176SBarry Smith 388776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 38888f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3889ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 38909f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 389108401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 389208401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 389308401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3894ecc77c7aSBarry Smith } 389576bd3646SJed Brown } 3896ecc77c7aSBarry Smith 38978f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3898b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 38999f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3900ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3901ccd8e176SBarry Smith d = 0; 39020daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39030daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3904ccd8e176SBarry Smith } 3905ccd8e176SBarry Smith d_nnz[i] = d; 3906ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3907ccd8e176SBarry Smith } 39089566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39099566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3910ccd8e176SBarry Smith 39118f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3912ccd8e176SBarry Smith ii = i + rstart; 39139f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3914ccd8e176SBarry Smith } 3915eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3916eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39179566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3919eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3920ccd8e176SBarry Smith 39216a3d2595SBarry Smith /* count number of entries below block diagonal */ 39226a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39236a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39246a3d2595SBarry Smith Aij->ld = ld; 39256a3d2595SBarry Smith for (i = 0; i < m; i++) { 39266a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39276a3d2595SBarry Smith j = 0; 3928ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39296a3d2595SBarry Smith ld[i] = j; 3930720a2405SPierre Jolivet if (J) J += nnz; 39316a3d2595SBarry Smith } 39326a3d2595SBarry Smith 39339566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3935ccd8e176SBarry Smith } 3936ccd8e176SBarry Smith 39371eea217eSSatish Balay /*@ 393811a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3939ccd8e176SBarry Smith (the default parallel PETSc format). 3940ccd8e176SBarry Smith 3941d083f849SBarry Smith Collective 3942ccd8e176SBarry Smith 3943ccd8e176SBarry Smith Input Parameters: 3944a1661176SMatthew Knepley + B - the matrix 3945d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3946d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3947ccd8e176SBarry Smith - v - optional values in the matrix 3948ccd8e176SBarry Smith 3949ccd8e176SBarry Smith Level: developer 3950ccd8e176SBarry Smith 395112251496SSatish Balay Notes: 39522ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39532ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 395411a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 395512251496SSatish Balay 39562ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 395712251496SSatish Balay 3958a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3959a4bd8bc0SBarry Smith 3960a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3961a4bd8bc0SBarry Smith 3962a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3963a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3964a4bd8bc0SBarry Smith 396512251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 396612251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3967c5e4d11fSDmitry Karpeev as shown 396827430b45SBarry Smith .vb 396927430b45SBarry Smith 1 0 0 397027430b45SBarry Smith 2 0 3 P0 397127430b45SBarry Smith ------- 397227430b45SBarry Smith 4 5 6 P1 397327430b45SBarry Smith 397427430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 397527430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 397627430b45SBarry Smith j = {0,0,2} [size = 3] 397727430b45SBarry Smith v = {1,2,3} [size = 3] 397827430b45SBarry Smith 397927430b45SBarry Smith Process1 [P1] rows_owned=[2] 398027430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 398127430b45SBarry Smith j = {0,1,2} [size = 3] 398227430b45SBarry Smith v = {4,5,6} [size = 3] 398327430b45SBarry Smith .ve 398412251496SSatish Balay 3985fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 3986a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 3987ccd8e176SBarry Smith @*/ 3988d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 3989d71ae5a4SJacob Faibussowitsch { 3990ccd8e176SBarry Smith PetscFunctionBegin; 3991cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 39923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3993ccd8e176SBarry Smith } 3994ccd8e176SBarry Smith 39955d83a8b1SBarry Smith /*@ 399611a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 3997273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 3998273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 399920f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4000273d9f13SBarry Smith 4001d083f849SBarry Smith Collective 4002273d9f13SBarry Smith 4003273d9f13SBarry Smith Input Parameters: 40041c4f3114SJed Brown + B - the matrix 4005273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4006273d9f13SBarry Smith (same value is used for all local rows) 4007273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4008273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40092ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4010273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40113287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40123287b5eaSJed Brown the diagonal entry even if it is zero. 4013273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4014273d9f13SBarry Smith submatrix (same value is used for all local rows). 4015273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4016273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40172ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4018273d9f13SBarry Smith structure. The size of this array is equal to the number 4019273d9f13SBarry Smith of local rows, i.e 'm'. 4020273d9f13SBarry Smith 40212920cce0SJacob Faibussowitsch Example Usage: 402227430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 402327430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 402427430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 402527430b45SBarry Smith as follows 402627430b45SBarry Smith 402727430b45SBarry Smith .vb 402827430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 402927430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 403027430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 403127430b45SBarry Smith ------------------------------------- 403227430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 403327430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 403427430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 403527430b45SBarry Smith ------------------------------------- 403627430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 403727430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 403827430b45SBarry Smith .ve 403927430b45SBarry Smith 404027430b45SBarry Smith This can be represented as a collection of submatrices as 404127430b45SBarry Smith .vb 404227430b45SBarry Smith A B C 404327430b45SBarry Smith D E F 404427430b45SBarry Smith G H I 404527430b45SBarry Smith .ve 404627430b45SBarry Smith 404727430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 404827430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 404927430b45SBarry Smith 405027430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405127430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405227430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 405327430b45SBarry Smith 405427430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 405527430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 405627430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 405727430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 405827430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40595163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 406027430b45SBarry Smith 406120f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40625163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40635163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40645163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40655163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 406620f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 406727430b45SBarry Smith .vb 406827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 406927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 407027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 407127430b45SBarry Smith .ve 407220f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 407327430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 407427430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 407527430b45SBarry Smith 34 values. 407627430b45SBarry Smith 407720f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 407827430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 407920f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 408027430b45SBarry Smith .vb 408127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 408227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 408327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 408427430b45SBarry Smith .ve 408527430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 408627430b45SBarry Smith hence pre-allocation is perfect. 408727430b45SBarry Smith 408827430b45SBarry Smith Level: intermediate 408927430b45SBarry Smith 409027430b45SBarry Smith Notes: 409149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 409249a6f317SBarry Smith 409327430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 40940598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4095651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4096273d9f13SBarry Smith 4097273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4098273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4099273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4100273d9f13SBarry Smith 4101273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4102a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4103a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4104a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4105a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4106a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4107a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4108a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4109a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4110273d9f13SBarry Smith 41112ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4112273d9f13SBarry Smith 411327430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4114aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 411527430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4116aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4117aa95bbe8SBarry Smith 41181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4119a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4120273d9f13SBarry Smith @*/ 4121d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4122d71ae5a4SJacob Faibussowitsch { 4123273d9f13SBarry Smith PetscFunctionBegin; 41246ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41256ba663aaSJed Brown PetscValidType(B, 1); 4126cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4128273d9f13SBarry Smith } 4129273d9f13SBarry Smith 413058d36128SBarry Smith /*@ 413111a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41328f8f2f0dSBarry Smith CSR format for the local rows. 41332fb0ec9aSBarry Smith 4134d083f849SBarry Smith Collective 41352fb0ec9aSBarry Smith 41362fb0ec9aSBarry Smith Input Parameters: 41372fb0ec9aSBarry Smith + comm - MPI communicator 413811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41392fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4140d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4141d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4142d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4143d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41445693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41455693b835SJunchao Zhang . j - global column indices 4146f1f2ae84SBarry Smith - a - optional matrix values 41472fb0ec9aSBarry Smith 41482fb0ec9aSBarry Smith Output Parameter: 41492fb0ec9aSBarry Smith . mat - the matrix 415003bfb495SBarry Smith 41512fb0ec9aSBarry Smith Level: intermediate 41522fb0ec9aSBarry Smith 41532fb0ec9aSBarry Smith Notes: 41542ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4155d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4156d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41572fb0ec9aSBarry Smith 41582ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 415912251496SSatish Balay 41605693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4161a4bd8bc0SBarry Smith 41625693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4163a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4164a4bd8bc0SBarry Smith 416512251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4166d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4167c5e4d11fSDmitry Karpeev as shown 41682ef1f0ffSBarry Smith .vb 41692ef1f0ffSBarry Smith 1 0 0 41702ef1f0ffSBarry Smith 2 0 3 P0 41712ef1f0ffSBarry Smith ------- 41722ef1f0ffSBarry Smith 4 5 6 P1 41738f8f2f0dSBarry Smith 41742ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41752ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41762ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41772ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41782fb0ec9aSBarry Smith 41792ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41802ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41812ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41822ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 41832ef1f0ffSBarry Smith .ve 41842ef1f0ffSBarry Smith 4185d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 41865693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 41872fb0ec9aSBarry Smith @*/ 4188d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4189d71ae5a4SJacob Faibussowitsch { 41902fb0ec9aSBarry Smith PetscFunctionBegin; 419108401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 419208401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 41939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 41949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 41959566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 41969566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 41979566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 41983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41992fb0ec9aSBarry Smith } 42002fb0ec9aSBarry Smith 42018f8f2f0dSBarry Smith /*@ 420211a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42032ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42042ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42056a3d2595SBarry Smith 42066a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42078f8f2f0dSBarry Smith 42088f8f2f0dSBarry Smith Collective 42098f8f2f0dSBarry Smith 42108f8f2f0dSBarry Smith Input Parameters: 42118f8f2f0dSBarry Smith + mat - the matrix 421211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42138f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 421411a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42158f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 421611a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 421711a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42188f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42198f8f2f0dSBarry Smith . J - column indices 42208f8f2f0dSBarry Smith - v - matrix values 42218f8f2f0dSBarry Smith 42222ef1f0ffSBarry Smith Level: deprecated 42238f8f2f0dSBarry Smith 42241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4225a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42268f8f2f0dSBarry Smith @*/ 4227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4228d71ae5a4SJacob Faibussowitsch { 42296a3d2595SBarry Smith PetscInt nnz, i; 42308f8f2f0dSBarry Smith PetscBool nooffprocentries; 42318f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4232fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4233fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42348f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42356a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42366a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42378f8f2f0dSBarry Smith 42388f8f2f0dSBarry Smith PetscFunctionBegin; 4239aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 424008401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 424108401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 424208401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42438f8f2f0dSBarry Smith 42449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42468f8f2f0dSBarry Smith 42478f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42484c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42494c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42504c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42514c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42524c17f1ccSBarry Smith } 42534c17f1ccSBarry Smith } 42548f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42558f8f2f0dSBarry Smith Iii = Ii[i]; 42568f8f2f0dSBarry Smith ldi = ld[i]; 42578f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42618f8f2f0dSBarry Smith ad += md; 42628f8f2f0dSBarry Smith ao += nnz - md; 42638f8f2f0dSBarry Smith } 42648f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42658f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42689566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42699566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42709566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42719566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42729566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42738f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42758f8f2f0dSBarry Smith } 42768f8f2f0dSBarry Smith 42776a3d2595SBarry Smith /*@ 427811a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42796a3d2595SBarry Smith 42806a3d2595SBarry Smith Collective 42816a3d2595SBarry Smith 42826a3d2595SBarry Smith Input Parameters: 42836a3d2595SBarry Smith + mat - the matrix 42846a3d2595SBarry Smith - v - matrix values, stored by row 42856a3d2595SBarry Smith 42866a3d2595SBarry Smith Level: intermediate 42876a3d2595SBarry Smith 4288a4bd8bc0SBarry Smith Notes: 42896a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 42906a3d2595SBarry Smith 4291a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4292a4bd8bc0SBarry Smith 42931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4294a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42956a3d2595SBarry Smith @*/ 4296d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4297d71ae5a4SJacob Faibussowitsch { 42986a3d2595SBarry Smith PetscInt nnz, i, m; 42996a3d2595SBarry Smith PetscBool nooffprocentries; 43006a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43016a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43026a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43036a3d2595SBarry Smith PetscScalar *ad, *ao; 43046a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43056a3d2595SBarry Smith PetscInt ldi, Iii, md; 43066a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43076a3d2595SBarry Smith 43086a3d2595SBarry Smith PetscFunctionBegin; 43096a3d2595SBarry Smith m = mat->rmap->n; 43106a3d2595SBarry Smith 43116a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43126a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43136a3d2595SBarry Smith Iii = 0; 43146a3d2595SBarry Smith for (i = 0; i < m; i++) { 43156a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43166a3d2595SBarry Smith ldi = ld[i]; 43176a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43186a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43196a3d2595SBarry Smith ad += md; 4320810441c8SPierre Jolivet if (ao) { 4321810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4322810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43236a3d2595SBarry Smith ao += nnz - md; 4324810441c8SPierre Jolivet } 43256a3d2595SBarry Smith Iii += nnz; 43266a3d2595SBarry Smith } 43276a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43286a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43296a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43306a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43316a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43326a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43336a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43346a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43356a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43366a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43386a3d2595SBarry Smith } 43396a3d2595SBarry Smith 43405d83a8b1SBarry Smith /*@ 434111a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4342273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4343273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43442ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4345273d9f13SBarry Smith 4346d083f849SBarry Smith Collective 4347273d9f13SBarry Smith 4348273d9f13SBarry Smith Input Parameters: 4349273d9f13SBarry Smith + comm - MPI communicator 435011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4351273d9f13SBarry Smith This value should be the same as the local size used in creating the 4352273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4353273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 435445f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4355273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 435611a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 435711a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4358273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4359273d9f13SBarry Smith (same value is used for all local rows) 4360273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4361273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43622ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4363273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4364273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4365273d9f13SBarry Smith submatrix (same value is used for all local rows). 4366273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4367273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43682ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4369273d9f13SBarry Smith structure. The size of this array is equal to the number 4370273d9f13SBarry Smith of local rows, i.e 'm'. 4371273d9f13SBarry Smith 4372273d9f13SBarry Smith Output Parameter: 4373273d9f13SBarry Smith . A - the matrix 4374273d9f13SBarry Smith 437527430b45SBarry Smith Options Database Keys: 437627430b45SBarry Smith + -mat_no_inode - Do not use inodes 437727430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 437827430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4379727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4380727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 438127430b45SBarry Smith 43822ef1f0ffSBarry Smith Level: intermediate 43832ef1f0ffSBarry Smith 438427430b45SBarry Smith Notes: 438577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4386f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 438711a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4388175b88e8SBarry Smith 438949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 439049a6f317SBarry Smith 43912ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 43922ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4393273d9f13SBarry Smith storage requirements for this matrix. 4394273d9f13SBarry Smith 439511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4396273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4397273d9f13SBarry Smith that argument. 4398273d9f13SBarry Smith 4399727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4400727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4401727bdf9bSBarry Smith 4402273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4403273d9f13SBarry Smith (possibly both). 4404273d9f13SBarry Smith 440533a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4406727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4407727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4408727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 440933a7c187SSatish Balay values corresponding to [m x N] submatrix. 4410273d9f13SBarry Smith 441133a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 441233a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4413df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 441433a7c187SSatish Balay 441533a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 441633a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 441733a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 441833a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 441933a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 442033a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44210b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44220b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 442333a7c187SSatish Balay 442433a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 442533a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 442633a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 442733a7c187SSatish Balay local matrix (a rectangular submatrix). 4428273d9f13SBarry Smith 44292ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4430273d9f13SBarry Smith 443197d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44322ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4433da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4434da57b5cdSKarl Rupp .vb 44352ef1f0ffSBarry Smith MatCreate(..., &A); 44362ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44372ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44382ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4439da57b5cdSKarl Rupp .ve 444097d05335SKris Buschelman 4441273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4442273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4443273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4444273d9f13SBarry Smith 44452920cce0SJacob Faibussowitsch Example Usage: 4446273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4447273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4448273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4449efc377ccSKarl Rupp as follows 4450273d9f13SBarry Smith 4451273d9f13SBarry Smith .vb 4452273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4453273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4454273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4455273d9f13SBarry Smith ------------------------------------- 4456273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4457273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4458273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4459273d9f13SBarry Smith ------------------------------------- 4460273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4461273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4462273d9f13SBarry Smith .ve 4463273d9f13SBarry Smith 4464da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4465273d9f13SBarry Smith 4466273d9f13SBarry Smith .vb 4467273d9f13SBarry Smith A B C 4468273d9f13SBarry Smith D E F 4469273d9f13SBarry Smith G H I 4470273d9f13SBarry Smith .ve 4471273d9f13SBarry Smith 4472273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4473273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4474273d9f13SBarry Smith 4475273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4476273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4477273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4478273d9f13SBarry Smith 4479273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4480273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4481273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4482273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 448327430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 44845163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4485273d9f13SBarry Smith 44862ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 44875163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 44885163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 44895163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 44905163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 44912ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4492273d9f13SBarry Smith .vb 449327430b45SBarry Smith proc0 dnz = 2, o_nz = 2 449427430b45SBarry Smith proc1 dnz = 3, o_nz = 2 449527430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4496273d9f13SBarry Smith .ve 44972ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4498273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4499273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4500273d9f13SBarry Smith 34 values. 4501273d9f13SBarry Smith 45022ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4503a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4504da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4505273d9f13SBarry Smith .vb 450627430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 450727430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 450827430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4509273d9f13SBarry Smith .ve 4510273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4511273d9f13SBarry Smith hence pre-allocation is perfect. 4512273d9f13SBarry Smith 45131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4514727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4515727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4516273d9f13SBarry Smith @*/ 4517d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4518d71ae5a4SJacob Faibussowitsch { 4519b1d57f15SBarry Smith PetscMPIInt size; 4520273d9f13SBarry Smith 4521273d9f13SBarry Smith PetscFunctionBegin; 45229566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4525273d9f13SBarry Smith if (size > 1) { 45269566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4528273d9f13SBarry Smith } else { 45299566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4531273d9f13SBarry Smith } 45323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4533273d9f13SBarry Smith } 4534195d93cdSBarry Smith 4535127ca0efSMatthew Knepley /*@C 45360ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4537127ca0efSMatthew Knepley 45382ef1f0ffSBarry Smith Not Collective 4539127ca0efSMatthew Knepley 4540127ca0efSMatthew Knepley Input Parameter: 454111a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4542127ca0efSMatthew Knepley 4543127ca0efSMatthew Knepley Output Parameters: 454411a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 454511a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45462ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4547127ca0efSMatthew Knepley 45480ab4885dSBarry Smith Level: intermediate 45490ab4885dSBarry Smith 455011a5261eSBarry Smith Note: 45512ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45522ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45532ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4554127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4555127ca0efSMatthew Knepley 4556ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4557127ca0efSMatthew Knepley @*/ 4558d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4559d71ae5a4SJacob Faibussowitsch { 4560195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 456104cf37c7SBarry Smith PetscBool flg; 4562b1d57f15SBarry Smith 4563195d93cdSBarry Smith PetscFunctionBegin; 45649566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 456528b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 456621e72a00SBarry Smith if (Ad) *Ad = a->A; 456721e72a00SBarry Smith if (Ao) *Ao = a->B; 456821e72a00SBarry Smith if (colmap) *colmap = a->garray; 45693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4570195d93cdSBarry Smith } 4571a2243be0SBarry Smith 4572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4573d71ae5a4SJacob Faibussowitsch { 4574110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 45759b8102ccSHong Zhang PetscInt *indx; 4576110bb6e1SHong Zhang PetscScalar *values; 4577421ddf4dSJunchao Zhang MatType rootType; 45789b8102ccSHong Zhang 45799b8102ccSHong Zhang PetscFunctionBegin; 45809566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4581110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4582110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4583110bb6e1SHong Zhang 458448a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4585a22543b6SHong Zhang /* Check sum(n) = N */ 4586462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 458708401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4588a22543b6SHong Zhang 45899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 45909b8102ccSHong Zhang rstart -= m; 45919b8102ccSHong Zhang 4592d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 45939b8102ccSHong Zhang for (i = 0; i < m; i++) { 45949566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 45959566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 45969566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 45979b8102ccSHong Zhang } 45989b8102ccSHong Zhang 45999566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46019566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46029566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46039566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46049566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4607d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46089566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46099b8102ccSHong Zhang } 46109b8102ccSHong Zhang 4611110bb6e1SHong Zhang /* numeric phase */ 46129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46139b8102ccSHong Zhang for (i = 0; i < m; i++) { 46149566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46159b8102ccSHong Zhang Ii = i + rstart; 46169566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46179566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46189b8102ccSHong Zhang } 46199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4622c5d6d63eSBarry Smith } 4623c5d6d63eSBarry Smith 4624cc1eb50dSBarry Smith static PetscErrorCode MatMergeSeqsToMPIDestroy(void **data) 4625d71ae5a4SJacob Faibussowitsch { 4626cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge = (MatMergeSeqsToMPI *)*data; 462751a7d1a8SHong Zhang 462851a7d1a8SHong Zhang PetscFunctionBegin; 46293ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46309566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46319566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46329566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46339566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46349566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46359566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46369566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46379566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46389566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46399566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46409566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46419566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46429566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46439566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464551a7d1a8SHong Zhang } 464651a7d1a8SHong Zhang 4647c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4648c6db04a5SJed Brown #include <petscbt.h> 46494ebed01fSBarry Smith 4650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4651d71ae5a4SJacob Faibussowitsch { 4652ce94432eSBarry Smith MPI_Comm comm; 465355d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4654b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 46556497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 46566497c311SBarry Smith PetscMPIInt proc, k; 4657b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 46586497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4659b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 466055d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 466155d1abb9SHong Zhang MPI_Status *status; 4662fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4663dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 4664cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 4665776b82aeSLisandro Dalcin PetscContainer container; 466655d1abb9SHong Zhang 466755d1abb9SHong Zhang PetscFunctionBegin; 46689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 46699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 46703c2c1871SHong Zhang 46719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 46729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 467355d1abb9SHong Zhang 46749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 467528b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 46769566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 46779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4678fff043a9SJunchao Zhang aa = a_a; 4679bf0cc555SLisandro Dalcin 468055d1abb9SHong Zhang bi = merge->bi; 468155d1abb9SHong Zhang bj = merge->bj; 468255d1abb9SHong Zhang buf_ri = merge->buf_ri; 468355d1abb9SHong Zhang buf_rj = merge->buf_rj; 468455d1abb9SHong Zhang 46859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 46867a2fc3feSBarry Smith owners = merge->rowmap->range; 468755d1abb9SHong Zhang len_s = merge->len_s; 468855d1abb9SHong Zhang 468955d1abb9SHong Zhang /* send and recv matrix values */ 46909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 46919566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 469255d1abb9SHong Zhang 46939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 469455d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 469555d1abb9SHong Zhang if (!len_s[proc]) continue; 469655d1abb9SHong Zhang i = owners[proc]; 46976497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 469855d1abb9SHong Zhang k++; 469955d1abb9SHong Zhang } 470055d1abb9SHong Zhang 47019566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47029566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 470455d1abb9SHong Zhang 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 470755d1abb9SHong Zhang 470855d1abb9SHong Zhang /* insert mat values of mpimat */ 47099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47109566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 471155d1abb9SHong Zhang 471255d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 471355d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4714f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 471555d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4716a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 471755d1abb9SHong Zhang } 471855d1abb9SHong Zhang 471955d1abb9SHong Zhang /* set values of ba */ 47207a2fc3feSBarry Smith m = merge->rowmap->n; 472155d1abb9SHong Zhang for (i = 0; i < m; i++) { 472255d1abb9SHong Zhang arow = owners[rank] + i; 472355d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 472455d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47259566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 472655d1abb9SHong Zhang 472755d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 472855d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 472955d1abb9SHong Zhang aj = a->j + ai[arow]; 4730fff043a9SJunchao Zhang aa = a_a + ai[arow]; 473155d1abb9SHong Zhang nextaj = 0; 473255d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 473355d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 473455d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 473555d1abb9SHong Zhang } 473655d1abb9SHong Zhang } 473755d1abb9SHong Zhang 473855d1abb9SHong Zhang /* add received vals into ba */ 473955d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 474055d1abb9SHong Zhang /* i-th row */ 474155d1abb9SHong Zhang if (i == *nextrow[k]) { 474255d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4743f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4744f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 474555d1abb9SHong Zhang nextaj = 0; 474655d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 474755d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 474855d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 474955d1abb9SHong Zhang } 475055d1abb9SHong Zhang } 47519371c9d4SSatish Balay nextrow[k]++; 47529371c9d4SSatish Balay nextai[k]++; 475355d1abb9SHong Zhang } 475455d1abb9SHong Zhang } 47559566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 475655d1abb9SHong Zhang } 47579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 476055d1abb9SHong Zhang 47619566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47629566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47639566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47649566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 476755d1abb9SHong Zhang } 476838f152feSBarry Smith 4769d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4770d71ae5a4SJacob Faibussowitsch { 477155a3bba9SHong Zhang Mat B_mpi; 4772c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4773b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4774b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4775d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 47766497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4777c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4778b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 477955d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 478058cb9c82SHong Zhang MPI_Status *status; 47810298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4782be0fcf8dSHong Zhang PetscBT lnkbt; 4783cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 4784776b82aeSLisandro Dalcin PetscContainer container; 478502c68681SHong Zhang 4786e5f2cdd8SHong Zhang PetscFunctionBegin; 47879566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 47883c2c1871SHong Zhang 478938f152feSBarry Smith /* make sure it is a PETSc comm */ 47909566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 47919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 479355d1abb9SHong Zhang 47949566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 47959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4796e5f2cdd8SHong Zhang 47976abd8857SHong Zhang /* determine row ownership */ 47989566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 47999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 480555d1abb9SHong Zhang 48067a2fc3feSBarry Smith m = merge->rowmap->n; 48077a2fc3feSBarry Smith owners = merge->rowmap->range; 48086abd8857SHong Zhang 48096abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48103e06a4e6SHong Zhang len_s = merge->len_s; 481151a7d1a8SHong Zhang 48122257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4813c2234fe3SHong Zhang merge->nsend = 0; 48146497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48152257cef7SHong Zhang len_si[proc] = 0; 48163e06a4e6SHong Zhang if (proc == rank) { 48176abd8857SHong Zhang len_s[proc] = 0; 48183e06a4e6SHong Zhang } else { 48196497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48206497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48213e06a4e6SHong Zhang } 48223e06a4e6SHong Zhang if (len_s[proc]) { 4823c2234fe3SHong Zhang merge->nsend++; 48242257cef7SHong Zhang nrows = 0; 48252257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48262257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48272257cef7SHong Zhang } 48286497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48292257cef7SHong Zhang len += len_si[proc]; 4830409913e3SHong Zhang } 483158cb9c82SHong Zhang } 4832409913e3SHong Zhang 48332257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48349566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48359566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4836671beff6SHong Zhang 48373e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48389566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48399566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 484002c68681SHong Zhang 48413e06a4e6SHong Zhang /* post the Isend of j-structure */ 48429566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48433e06a4e6SHong Zhang 48446497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4845409913e3SHong Zhang if (!len_s[proc]) continue; 484602c68681SHong Zhang i = owners[proc]; 48476497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 484851a7d1a8SHong Zhang k++; 484951a7d1a8SHong Zhang } 485051a7d1a8SHong Zhang 48513e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48529566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48539566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 485402c68681SHong Zhang 485502c68681SHong Zhang /* send and recv i-structure */ 48569566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48579566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 485802c68681SHong Zhang 48599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48603e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48616497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 486202c68681SHong Zhang if (!len_s[proc]) continue; 48633e06a4e6SHong Zhang /* form outgoing message for i-structure: 48643e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48653e06a4e6SHong Zhang [1:nrows]: row index (global) 48663e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48673e06a4e6SHong Zhang */ 48682257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 48693e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 48703e06a4e6SHong Zhang buf_si[0] = nrows; 48713e06a4e6SHong Zhang buf_si_i[0] = 0; 48723e06a4e6SHong Zhang nrows = 0; 48733e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48743e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 48753e06a4e6SHong Zhang if (anzi) { 48763e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 48773e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 48783e06a4e6SHong Zhang nrows++; 48793e06a4e6SHong Zhang } 48803e06a4e6SHong Zhang } 48816497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 488202c68681SHong Zhang k++; 48832257cef7SHong Zhang buf_si += len_si[proc]; 488402c68681SHong Zhang } 48852257cef7SHong Zhang 48869566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 48879566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 488802c68681SHong Zhang 48899566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 489048a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 48913e06a4e6SHong Zhang 48929566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 48939566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 48949566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 48959566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 48969566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 48979566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 48989566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 489958cb9c82SHong Zhang 4900bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 490158cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 490358cb9c82SHong Zhang bi[0] = 0; 490458cb9c82SHong Zhang 4905be0fcf8dSHong Zhang /* create and initialize a linked list */ 4906be0fcf8dSHong Zhang nlnk = N + 1; 49079566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 490858cb9c82SHong Zhang 4909bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4910bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49119566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49122205254eSKarl Rupp 491358cb9c82SHong Zhang current_space = free_space; 491458cb9c82SHong Zhang 4915bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49169566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49171d79065fSBarry Smith 49183e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49192257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49203e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49213e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4922a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49233e06a4e6SHong Zhang } 49242257cef7SHong Zhang 4925d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4926bcc1bcd5SHong Zhang len = 0; 492758cb9c82SHong Zhang for (i = 0; i < m; i++) { 492858cb9c82SHong Zhang bnzi = 0; 492958cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 493058cb9c82SHong Zhang arow = owners[rank] + i; 493158cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 493258cb9c82SHong Zhang aj = a->j + ai[arow]; 49339566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 493458cb9c82SHong Zhang bnzi += nlnk; 493558cb9c82SHong Zhang /* add received col data into lnk */ 493651a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 493755d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49383e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49393e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49409566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49413e06a4e6SHong Zhang bnzi += nlnk; 49429371c9d4SSatish Balay nextrow[k]++; 49439371c9d4SSatish Balay nextai[k]++; 49443e06a4e6SHong Zhang } 494558cb9c82SHong Zhang } 4946bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 494758cb9c82SHong Zhang 494858cb9c82SHong Zhang /* if free space is not available, make more free space */ 494948a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 495058cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49519566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49529566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4953bcc1bcd5SHong Zhang 495458cb9c82SHong Zhang current_space->array += bnzi; 495558cb9c82SHong Zhang current_space->local_used += bnzi; 495658cb9c82SHong Zhang current_space->local_remaining -= bnzi; 495758cb9c82SHong Zhang 495858cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 495958cb9c82SHong Zhang } 4960bcc1bcd5SHong Zhang 49619566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4962bcc1bcd5SHong Zhang 496384648c2dSPierre Jolivet PetscCall(PetscMalloc1(bi[m], &bj)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49659566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4966409913e3SHong Zhang 4967bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 49689566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 49699566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 497054b84b50SHong Zhang if (n == PETSC_DECIDE) { 49719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 497254b84b50SHong Zhang } else { 49739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 497454b84b50SHong Zhang } 49759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 49769566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 49779566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 4978d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 49799566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 498058cb9c82SHong Zhang 498190431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 49826abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 4983affca5deSHong Zhang merge->bi = bi; 4984affca5deSHong Zhang merge->bj = bj; 498502c68681SHong Zhang merge->buf_ri = buf_ri; 498602c68681SHong Zhang merge->buf_rj = buf_rj; 49870298fd71SBarry Smith merge->coi = NULL; 49880298fd71SBarry Smith merge->coj = NULL; 49890298fd71SBarry Smith merge->owners_co = NULL; 4990affca5deSHong Zhang 49919566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 4992bf0cc555SLisandro Dalcin 4993affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 49949566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 49959566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 4996cc1eb50dSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatMergeSeqsToMPIDestroy)); 49979566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 49989566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 4999affca5deSHong Zhang *mpimat = B_mpi; 500038f152feSBarry Smith 50019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5003e5f2cdd8SHong Zhang } 500425616d81SHong Zhang 5005cc4c1da9SBarry Smith /*@ 500611a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5007d4036a1aSHong Zhang matrices from each processor 5008d4036a1aSHong Zhang 5009d083f849SBarry Smith Collective 5010d4036a1aSHong Zhang 5011d4036a1aSHong Zhang Input Parameters: 5012d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5013d4036a1aSHong Zhang . seqmat - the input sequential matrices 501411a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 501511a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 501611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5017d4036a1aSHong Zhang 5018d4036a1aSHong Zhang Output Parameter: 5019d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5020d4036a1aSHong Zhang 5021d4036a1aSHong Zhang Level: advanced 5022d4036a1aSHong Zhang 502311a5261eSBarry Smith Note: 5024d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 50257da3f0dfSBarry Smith The input seqmat is included into the container `MatMergeSeqsToMPIDestroy`, and will be 5026b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50272ef1f0ffSBarry Smith 50281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5029d4036a1aSHong Zhang @*/ 5030d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5031d71ae5a4SJacob Faibussowitsch { 50327e63b356SHong Zhang PetscMPIInt size; 503355d1abb9SHong Zhang 503455d1abb9SHong Zhang PetscFunctionBegin; 50359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50367e63b356SHong Zhang if (size == 1) { 50379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50387e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50399566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50407e63b356SHong Zhang } else { 50419566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50427e63b356SHong Zhang } 50439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50457e63b356SHong Zhang } 50469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 504748a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50489566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50499566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 505155d1abb9SHong Zhang } 50524ebed01fSBarry Smith 5053bc08b0f1SBarry Smith /*@ 50542920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50558a9c020eSBarry Smith 50568a9c020eSBarry Smith Not Collective 50578a9c020eSBarry Smith 50582fe279fdSBarry Smith Input Parameter: 505920f4b53cSBarry Smith . A - the matrix 50608a9c020eSBarry Smith 50618a9c020eSBarry Smith Output Parameter: 50628a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50638a9c020eSBarry Smith 50648a9c020eSBarry Smith Level: developer 50658a9c020eSBarry Smith 50668a9c020eSBarry Smith Notes: 50672920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 50682920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 50692920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 50702920cce0SJacob Faibussowitsch 507111a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 50728a9c020eSBarry Smith 50732920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 50742920cce0SJacob Faibussowitsch 507511a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 50768a9c020eSBarry Smith 50771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 50788a9c020eSBarry Smith @*/ 5079d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5080d71ae5a4SJacob Faibussowitsch { 50818a9c020eSBarry Smith PetscBool mpi; 50828a9c020eSBarry Smith 50838a9c020eSBarry Smith PetscFunctionBegin; 50848a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 50858a9c020eSBarry Smith if (mpi) { 50868a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 50878a9c020eSBarry Smith } else { 50888a9c020eSBarry Smith *A_loc = A; 50898a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 50908a9c020eSBarry Smith } 50913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50928a9c020eSBarry Smith } 50938a9c020eSBarry Smith 50948a9c020eSBarry Smith /*@ 50952920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 509625616d81SHong Zhang 509732fba14fSHong Zhang Not Collective 509825616d81SHong Zhang 509925616d81SHong Zhang Input Parameters: 510025616d81SHong Zhang + A - the matrix 510111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 510225616d81SHong Zhang 510325616d81SHong Zhang Output Parameter: 510425616d81SHong Zhang . A_loc - the local sequential matrix generated 510525616d81SHong Zhang 510625616d81SHong Zhang Level: developer 510725616d81SHong Zhang 510877c65a98SStefano Zampini Notes: 51092920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51102920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51112920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51122920cce0SJacob Faibussowitsch 511311a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51148a9c020eSBarry Smith 51152920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51162920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51172920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51182920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 511977c65a98SStefano Zampini 51201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 512125616d81SHong Zhang @*/ 5122d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5123d71ae5a4SJacob Faibussowitsch { 512401b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5125b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5126b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5127ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5128ce496241SStefano Zampini PetscScalar *ca, *cam; 512977c65a98SStefano Zampini PetscMPIInt size; 5130d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51315a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51328661ff28SBarry Smith PetscBool match; 513325616d81SHong Zhang 513425616d81SHong Zhang PetscFunctionBegin; 51359566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 513628b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 513877c65a98SStefano Zampini if (size == 1) { 513977c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 514177c65a98SStefano Zampini *A_loc = mpimat->A; 514277c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51439566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 514477c65a98SStefano Zampini } 51453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 514677c65a98SStefano Zampini } 514770a9ba44SHong Zhang 51489566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5149f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5150f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 51519371c9d4SSatish Balay ai = a->i; 51529371c9d4SSatish Balay aj = a->j; 51539371c9d4SSatish Balay bi = b->i; 51549371c9d4SSatish Balay bj = b->j; 51559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5157ce496241SStefano Zampini aa = aav; 5158ce496241SStefano Zampini ba = bav; 515901b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5161dea91ad1SHong Zhang ci[0] = 0; 5162ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5165dea91ad1SHong Zhang k = 0; 516601b7ae99SHong Zhang for (i = 0; i < am; i++) { 51675a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 51685a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 516901b7ae99SHong Zhang /* off-diagonal portion of A */ 51705a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 51715a7d977cSHong Zhang col = cmap[*bj]; 51725a7d977cSHong Zhang if (col >= cstart) break; 51739371c9d4SSatish Balay cj[k] = col; 51749371c9d4SSatish Balay bj++; 51755a7d977cSHong Zhang ca[k++] = *ba++; 51765a7d977cSHong Zhang } 51775a7d977cSHong Zhang /* diagonal portion of A */ 51785a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 51795a7d977cSHong Zhang cj[k] = cstart + *aj++; 51805a7d977cSHong Zhang ca[k++] = *aa++; 51815a7d977cSHong Zhang } 51825a7d977cSHong Zhang /* off-diagonal portion of A */ 51835a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 51845a7d977cSHong Zhang cj[k] = cmap[*bj++]; 51855a7d977cSHong Zhang ca[k++] = *ba++; 51865a7d977cSHong Zhang } 518725616d81SHong Zhang } 5188dea91ad1SHong Zhang /* put together the new matrix */ 51899566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5190dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5191dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5192dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5193e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5194e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5195dea91ad1SHong Zhang mat->nonew = 0; 51965a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 51975a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5198fff043a9SJunchao Zhang ci = mat->i; 5199fff043a9SJunchao Zhang cj = mat->j; 52009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52015a7d977cSHong Zhang for (i = 0; i < am; i++) { 52025a7d977cSHong Zhang /* off-diagonal portion of A */ 52035a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52045a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52055a7d977cSHong Zhang col = cmap[*bj]; 52065a7d977cSHong Zhang if (col >= cstart) break; 52079371c9d4SSatish Balay *cam++ = *ba++; 52089371c9d4SSatish Balay bj++; 52095a7d977cSHong Zhang } 52105a7d977cSHong Zhang /* diagonal portion of A */ 5211ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5212a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52135a7d977cSHong Zhang /* off-diagonal portion of A */ 5214f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52159371c9d4SSatish Balay *cam++ = *ba++; 52169371c9d4SSatish Balay bj++; 5217f33d1a9aSHong Zhang } 52185a7d977cSHong Zhang } 52199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 522098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522525616d81SHong Zhang } 522625616d81SHong Zhang 5227ed502f03SStefano Zampini /*@ 522811a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52294cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5230ed502f03SStefano Zampini 5231ed502f03SStefano Zampini Not Collective 5232ed502f03SStefano Zampini 5233ed502f03SStefano Zampini Input Parameters: 5234ed502f03SStefano Zampini + A - the matrix 523511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5236ed502f03SStefano Zampini 5237d8d19677SJose E. Roman Output Parameters: 52382ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5239ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5240ed502f03SStefano Zampini 5241ed502f03SStefano Zampini Level: developer 5242ed502f03SStefano Zampini 524311a5261eSBarry Smith Note: 52442ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52454cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5246ed502f03SStefano Zampini 52471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5248ed502f03SStefano Zampini @*/ 5249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5250d71ae5a4SJacob Faibussowitsch { 5251ed502f03SStefano Zampini Mat Ao, Ad; 5252ed502f03SStefano Zampini const PetscInt *cmap; 5253ed502f03SStefano Zampini PetscMPIInt size; 5254ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5255ed502f03SStefano Zampini 5256ed502f03SStefano Zampini PetscFunctionBegin; 52579566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5259ed502f03SStefano Zampini if (size == 1) { 5260ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5262ed502f03SStefano Zampini *A_loc = Ad; 5263ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52649566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5265ed502f03SStefano Zampini } 52669566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5268ed502f03SStefano Zampini } 52699566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 52709566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5271ed502f03SStefano Zampini if (f) { 52729566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5273ed502f03SStefano Zampini } else { 5274ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5275ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5276ed502f03SStefano Zampini Mat_SeqAIJ *c; 5277ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5278ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5279ed502f03SStefano Zampini PetscInt *ci, *cj; 5280ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5281ed502f03SStefano Zampini PetscScalar *ca; 5282ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5283ed502f03SStefano Zampini 52849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 52859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 52869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 52879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5288ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5289ed502f03SStefano Zampini PetscInt k; 52909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 52919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 52929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5293ed502f03SStefano Zampini ci[0] = 0; 5294ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5295ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5296ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5297ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5298ed502f03SStefano Zampini /* diagonal portion of A */ 5299ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5300ed502f03SStefano Zampini cj[k] = *aj++; 5301ed502f03SStefano Zampini ca[k] = *aa++; 5302ed502f03SStefano Zampini } 5303ed502f03SStefano Zampini /* off-diagonal portion of A */ 5304ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5305ed502f03SStefano Zampini cj[k] = dn + *bj++; 5306ed502f03SStefano Zampini ca[k] = *ba++; 5307ed502f03SStefano Zampini } 5308ed502f03SStefano Zampini } 5309ed502f03SStefano Zampini /* put together the new matrix */ 53109566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5311ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5312ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5313ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5314ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5315ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5316ed502f03SStefano Zampini c->nonew = 0; 53179566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5318ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5320ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5321ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5322ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5323ed502f03SStefano Zampini /* diagonal portion of A */ 5324ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5325ed502f03SStefano Zampini /* off-diagonal portion of A */ 5326ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5327ed502f03SStefano Zampini } 53289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 532998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5332ed502f03SStefano Zampini if (glob) { 5333ed502f03SStefano Zampini PetscInt cst, *gidx; 5334ed502f03SStefano Zampini 53359566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5337ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5338ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5340ed502f03SStefano Zampini } 5341ed502f03SStefano Zampini } 53429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5344ed502f03SStefano Zampini } 5345ed502f03SStefano Zampini 534632fba14fSHong Zhang /*@C 534711a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 534832fba14fSHong Zhang 534932fba14fSHong Zhang Not Collective 535032fba14fSHong Zhang 535132fba14fSHong Zhang Input Parameters: 535232fba14fSHong Zhang + A - the matrix 535311a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 535420f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 535520f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 535632fba14fSHong Zhang 535732fba14fSHong Zhang Output Parameter: 535832fba14fSHong Zhang . A_loc - the local sequential matrix generated 535932fba14fSHong Zhang 536032fba14fSHong Zhang Level: developer 536132fba14fSHong Zhang 53621cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 536332fba14fSHong Zhang @*/ 5364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5365d71ae5a4SJacob Faibussowitsch { 536632fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 536732fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 536832fba14fSHong Zhang IS isrowa, iscola; 536932fba14fSHong Zhang Mat *aloc; 53704a2b5492SBarry Smith PetscBool match; 537132fba14fSHong Zhang 537232fba14fSHong Zhang PetscFunctionBegin; 53739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 537428b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 53759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 537632fba14fSHong Zhang if (!row) { 53779371c9d4SSatish Balay start = A->rmap->rstart; 53789371c9d4SSatish Balay end = A->rmap->rend; 53799566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 538032fba14fSHong Zhang } else { 538132fba14fSHong Zhang isrowa = *row; 538232fba14fSHong Zhang } 538332fba14fSHong Zhang if (!col) { 5384d0f46423SBarry Smith start = A->cmap->rstart; 538532fba14fSHong Zhang cmap = a->garray; 5386d0f46423SBarry Smith nzA = a->A->cmap->n; 5387d0f46423SBarry Smith nzB = a->B->cmap->n; 53889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 538932fba14fSHong Zhang ncols = 0; 539032fba14fSHong Zhang for (i = 0; i < nzB; i++) { 539132fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 539232fba14fSHong Zhang else break; 539332fba14fSHong Zhang } 539432fba14fSHong Zhang imark = i; 539532fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 539632fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 53979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 539832fba14fSHong Zhang } else { 539932fba14fSHong Zhang iscola = *col; 540032fba14fSHong Zhang } 540132fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 540332fba14fSHong Zhang aloc[0] = *A_loc; 540432fba14fSHong Zhang } 54059566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5406109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54079566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5408109e0772SStefano Zampini } 540932fba14fSHong Zhang *A_loc = aloc[0]; 54109566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 541148a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 541248a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 541532fba14fSHong Zhang } 541632fba14fSHong Zhang 54175c65b9ecSFande Kong /* 54185c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54195c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54205c65b9ecSFande Kong * on a global size. 54215c65b9ecSFande Kong * */ 5422ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5423d71ae5a4SJacob Faibussowitsch { 54245c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5425f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5426131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5427131c27b5Sprj- PetscMPIInt owner; 54285c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54295c65b9ecSFande Kong const PetscInt *lrowindices; 54305c65b9ecSFande Kong PetscSF sf, osf; 54315c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54325c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54335c65b9ecSFande Kong MPI_Comm comm; 54345c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5435fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54365c65b9ecSFande Kong 54375c65b9ecSFande Kong PetscFunctionBegin; 54389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54395c65b9ecSFande Kong /* plocalsize is the number of roots 54405c65b9ecSFande Kong * nrows is the number of leaves 54415c65b9ecSFande Kong * */ 54429566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54439566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54465c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54475c65b9ecSFande Kong /* Find a remote index and an owner for a row 54485c65b9ecSFande Kong * The row could be local or remote 54495c65b9ecSFande Kong * */ 545034bcad68SFande Kong owner = 0; 545134bcad68SFande Kong lidx = 0; 54529566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54535c65b9ecSFande Kong iremote[i].index = lidx; 54545c65b9ecSFande Kong iremote[i].rank = owner; 54555c65b9ecSFande Kong } 54565c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54579566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5458f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54595c65b9ecSFande Kong * offsets 54605c65b9ecSFande Kong * */ 54619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54629566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54639566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5464bc8e477aSFande Kong 54659566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54669566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54679566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 54685c65b9ecSFande Kong roffsets[0] = 0; 54695c65b9ecSFande Kong roffsets[1] = 0; 54705c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 54714cf0e950SBarry Smith /* diagonal */ 54725c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 54734cf0e950SBarry Smith /* off-diagonal */ 54745c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 54755c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 54765c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 54775c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 54785c65b9ecSFande Kong } 54799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 54809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 54815c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 54829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 54879566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 54889566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 54895c65b9ecSFande Kong dntotalcols = 0; 54905c65b9ecSFande Kong ontotalcols = 0; 5491bc8e477aSFande Kong ncol = 0; 54925c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54935c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5494bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 54954cf0e950SBarry Smith /* diagonal */ 54965c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 54974cf0e950SBarry Smith /* off-diagonal */ 54985c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 54995c65b9ecSFande Kong } 55005c65b9ecSFande Kong /* We do not need to figure the right number of columns 55015c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55025c65b9ecSFande Kong * */ 55039566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55049566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55059566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55065c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55074cf0e950SBarry Smith /* diagonal */ 55089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55094cf0e950SBarry Smith /* off-diagonal */ 55109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55114cf0e950SBarry Smith /* diagonal */ 55129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55134cf0e950SBarry Smith /* off-diagonal */ 55149566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55155c65b9ecSFande Kong dntotalcols = 0; 55165c65b9ecSFande Kong ontotalcols = 0; 55175c65b9ecSFande Kong ntotalcols = 0; 55185c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 551934bcad68SFande Kong owner = 0; 55209566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55215c65b9ecSFande Kong /* Set iremote for diag matrix */ 55225c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55235c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55245c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55255c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55265c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55275c65b9ecSFande Kong } 55284cf0e950SBarry Smith /* off-diagonal */ 55295c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55305c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55315c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55325c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55335c65b9ecSFande Kong } 55345c65b9ecSFande Kong } 55359566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55369566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55379566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55389566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55395c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55405c65b9ecSFande Kong * Diag matrix 55415c65b9ecSFande Kong * */ 55429566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55439566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55449566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55455c65b9ecSFande Kong 55469566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55474cf0e950SBarry Smith /* off-diagonal */ 55489566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55499566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55509566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55534cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55569566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55575c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55585c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55605c65b9ecSFande Kong /* We want P_oth store global indices */ 55619566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55625c65b9ecSFande Kong /* Use memory scalable approach */ 55639566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55649566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55675c65b9ecSFande Kong /* Convert back to local indices */ 55685c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 55699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55705c65b9ecSFande Kong nout = 0; 55719566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 557208401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 55739566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 55745c65b9ecSFande Kong /* Exchange values */ 55759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 55789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 55795c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 55805c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 55819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 55829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 55835c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 55849566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 55859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 55869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55879566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 55883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55895c65b9ecSFande Kong } 55905c65b9ecSFande Kong 55915c65b9ecSFande Kong /* 55925c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 55935c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 55945c65b9ecSFande Kong * */ 5595d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5596d71ae5a4SJacob Faibussowitsch { 55975c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5598bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5599bc8e477aSFande Kong IS rows, map; 5600bc8e477aSFande Kong PetscHMapI hamp; 5601bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56025c65b9ecSFande Kong MPI_Comm comm; 56035c65b9ecSFande Kong PetscSF sf, osf; 5604bc8e477aSFande Kong PetscBool has; 56055c65b9ecSFande Kong 56065c65b9ecSFande Kong PetscFunctionBegin; 56079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56089566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56095c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56105c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56115c65b9ecSFande Kong * */ 56125c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56135c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5614eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56159566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5616bc8e477aSFande Kong count = 0; 5617bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5618bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5619bc8e477aSFande Kong key = a->garray[i] / dof; 56209566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5621bc8e477aSFande Kong if (!has) { 5622bc8e477aSFande Kong mapping[i] = count; 56239566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5624bc8e477aSFande Kong } else { 5625bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5626bc8e477aSFande Kong mapping[i] = count - 1; 56275c65b9ecSFande Kong } 5628bc8e477aSFande Kong } 56299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56309566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5631eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56335c65b9ecSFande Kong off = 0; 56349566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56359566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56369566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56379566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56385c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56399566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56409566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56445c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56455c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 564635cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5647fff043a9SJunchao Zhang */ 5648fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5649fff043a9SJunchao Zhang 56509566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56519566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 565208401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56535c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56545c65b9ecSFande Kong /* Update values in place */ 56559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56636718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56649566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56665c65b9ecSFande Kong } 56675c65b9ecSFande Kong 566825616d81SHong Zhang /*@C 566920f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 567025616d81SHong Zhang 5671c3339decSBarry Smith Collective 567225616d81SHong Zhang 567325616d81SHong Zhang Input Parameters: 567411a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 567511a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 567611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 567725616d81SHong Zhang 5678f1a722f8SMatthew G. Knepley Output Parameters: 567927430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 568027430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5681f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 568225616d81SHong Zhang 568325616d81SHong Zhang Level: developer 568425616d81SHong Zhang 568520f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 568625616d81SHong Zhang @*/ 5687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5688d71ae5a4SJacob Faibussowitsch { 5689899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5690b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 569125616d81SHong Zhang IS isrowb, iscolb; 56920298fd71SBarry Smith Mat *bseq = NULL; 569325616d81SHong Zhang 569425616d81SHong Zhang PetscFunctionBegin; 569520f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 569620f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 56979566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 569825616d81SHong Zhang 569925616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5700d0f46423SBarry Smith start = A->cmap->rstart; 570125616d81SHong Zhang cmap = a->garray; 5702d0f46423SBarry Smith nzA = a->A->cmap->n; 5703d0f46423SBarry Smith nzB = a->B->cmap->n; 57049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 570525616d81SHong Zhang ncols = 0; 57060390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 570725616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 570825616d81SHong Zhang else break; 570925616d81SHong Zhang } 571025616d81SHong Zhang imark = i; 57110390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57120390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57139566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57149566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 571525616d81SHong Zhang } else { 571608401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57179371c9d4SSatish Balay isrowb = *rowb; 57189371c9d4SSatish Balay iscolb = *colb; 57199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 572025616d81SHong Zhang bseq[0] = *B_seq; 572125616d81SHong Zhang } 57229566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 572325616d81SHong Zhang *B_seq = bseq[0]; 57249566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 572525616d81SHong Zhang if (!rowb) { 57269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 572725616d81SHong Zhang } else { 572825616d81SHong Zhang *rowb = isrowb; 572925616d81SHong Zhang } 573025616d81SHong Zhang if (!colb) { 57319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 573225616d81SHong Zhang } else { 573325616d81SHong Zhang *colb = iscolb; 573425616d81SHong Zhang } 57359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 573725616d81SHong Zhang } 5738429d309bSHong Zhang 5739f8487c73SHong Zhang /* 574027430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 574101b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5742429d309bSHong Zhang 5743c3339decSBarry Smith Collective 5744429d309bSHong Zhang 5745429d309bSHong Zhang Input Parameters: 574627430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 574727430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5748429d309bSHong Zhang 5749429d309bSHong Zhang Output Parameter: 57500298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57510298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57520298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5753598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5754429d309bSHong Zhang 575511a5261eSBarry Smith Developer Note: 575611a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57576eb45d04SBarry Smith for this matrix. This is not desirable.. 57586eb45d04SBarry Smith 5759429d309bSHong Zhang Level: developer 5760429d309bSHong Zhang 5761f8487c73SHong Zhang */ 57626497c311SBarry Smith 5763d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5764d71ae5a4SJacob Faibussowitsch { 5765899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 57664b8d542aSHong Zhang VecScatter ctx; 5767ce94432eSBarry Smith MPI_Comm comm; 57683515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 57696497c311SBarry Smith PetscMPIInt nrecvs, nsends; 57703515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5771277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 57726497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5773277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5774ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5775ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5776429d309bSHong Zhang 5777429d309bSHong Zhang PetscFunctionBegin; 57789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5780a7c7454dSHong Zhang 578120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 578220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 57849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5785a6b2eed2SHong Zhang 5786ec07b8f8SHong Zhang if (size == 1) { 5787ec07b8f8SHong Zhang startsj_s = NULL; 5788ec07b8f8SHong Zhang bufa_ptr = NULL; 578952f7967eSHong Zhang *B_oth = NULL; 57903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5791ec07b8f8SHong Zhang } 5792ec07b8f8SHong Zhang 5793fa83eaafSHong Zhang ctx = a->Mvctx; 57944b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 57954b8d542aSHong Zhang 57969566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 57973515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 57989566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 57999566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5801ddea5d60SJunchao Zhang rwaits = reqs; 58028e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5803429d309bSHong Zhang 5804b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5805429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5806a6b2eed2SHong Zhang /* i-array */ 5807a6b2eed2SHong Zhang /* post receives */ 58089566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5809a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 581074268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5811e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58126497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5813429d309bSHong Zhang } 5814a6b2eed2SHong Zhang 5815a6b2eed2SHong Zhang /* pack the outgoing message */ 58169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58172205254eSKarl Rupp 58182205254eSKarl Rupp sstartsj[0] = 0; 58192205254eSKarl Rupp rstartsj[0] = 0; 5820a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58213515ee7fSJunchao Zhang if (nsends) { 58223515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58243515ee7fSJunchao Zhang } 5825a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58263515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5827e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 582887025532SHong Zhang for (j = 0; j < nrows; j++) { 5829d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5830e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58319566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58322205254eSKarl Rupp 5833e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58342205254eSKarl Rupp 5835e42f35eeSHong Zhang len += ncols; 58369566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5837e42f35eeSHong Zhang } 5838a6b2eed2SHong Zhang k++; 5839429d309bSHong Zhang } 58406497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58412205254eSKarl Rupp 5842dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5843429d309bSHong Zhang } 584487025532SHong Zhang /* recvs and sends of i-array are completed */ 58459566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58469566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5847e42f35eeSHong Zhang 5848a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 584984648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &bufj)); 585084648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &bufa)); 5851a6b2eed2SHong Zhang 585287025532SHong Zhang /* create i-array of B_oth */ 585384648c2dSPierre Jolivet PetscCall(PetscMalloc1(aBn + 1, &b_othi)); 58542205254eSKarl Rupp 585587025532SHong Zhang b_othi[0] = 0; 5856a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5857a6b2eed2SHong Zhang k = 0; 5858a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58593515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58603515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 586187025532SHong Zhang for (j = 0; j < nrows; j++) { 586287025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58639566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5864f91af8c7SBarry Smith k++; 5865a6b2eed2SHong Zhang } 5866dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5867a6b2eed2SHong Zhang } 58689566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5869a6b2eed2SHong Zhang 58706aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 587184648c2dSPierre Jolivet PetscCall(PetscMalloc1(b_othi[aBn], &b_othj)); 587284648c2dSPierre Jolivet PetscCall(PetscMalloc1(b_othi[aBn], &b_otha)); 5873a6b2eed2SHong Zhang 587487025532SHong Zhang /* j-array */ 5875a6b2eed2SHong Zhang /* post receives of j-array */ 5876a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587787025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 587884648c2dSPierre Jolivet PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_othj, rstartsj[i]), nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5879a6b2eed2SHong Zhang } 5880e42f35eeSHong Zhang 5881e42f35eeSHong Zhang /* pack the outgoing message j-array */ 58823515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5883a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5884e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 588584648c2dSPierre Jolivet bufJ = PetscSafePointerPlusOffset(bufj, sstartsj[i]); 588687025532SHong Zhang for (j = 0; j < nrows; j++) { 5887d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5888e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 58899566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5890ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 58919566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5892e42f35eeSHong Zhang } 589387025532SHong Zhang } 589484648c2dSPierre Jolivet PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufj, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 589587025532SHong Zhang } 589687025532SHong Zhang 589787025532SHong Zhang /* recvs and sends of j-array are completed */ 58989566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 589987025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5900b7f45c76SHong Zhang sstartsj = *startsj_s; 59011d79065fSBarry Smith rstartsj = *startsj_r; 590287025532SHong Zhang bufa = *bufa_ptr; 59039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5904ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 590587025532SHong Zhang 590687025532SHong Zhang /* a-array */ 590787025532SHong Zhang /* post receives of a-array */ 590887025532SHong Zhang for (i = 0; i < nrecvs; i++) { 590987025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 591084648c2dSPierre Jolivet PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_otha, rstartsj[i]), nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 591187025532SHong Zhang } 5912e42f35eeSHong Zhang 5913e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59143515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 591587025532SHong Zhang for (i = 0; i < nsends; i++) { 5916e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 591784648c2dSPierre Jolivet bufA = PetscSafePointerPlusOffset(bufa, sstartsj[i]); 591887025532SHong Zhang for (j = 0; j < nrows; j++) { 5919d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5920e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59219566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5922ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59239566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5924e42f35eeSHong Zhang } 5925a6b2eed2SHong Zhang } 592684648c2dSPierre Jolivet PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufa, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5927a6b2eed2SHong Zhang } 592887025532SHong Zhang /* recvs and sends of a-array are completed */ 59299566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59309566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5931a6b2eed2SHong Zhang 593287025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5933dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5934dd460d27SBarry Smith 5935a6b2eed2SHong Zhang /* put together the new matrix */ 59369566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5937a6b2eed2SHong Zhang 5938a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5939a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 594087025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5941e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5942e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 594387025532SHong Zhang b_oth->nonew = 0; 5944a6b2eed2SHong Zhang 59459566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5946b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59479566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59489566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5949dea91ad1SHong Zhang } else { 5950b7f45c76SHong Zhang *startsj_s = sstartsj; 59511d79065fSBarry Smith *startsj_r = rstartsj; 595287025532SHong Zhang *bufa_ptr = bufa; 595387025532SHong Zhang } 5954fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5956dea91ad1SHong Zhang } 59573515ee7fSJunchao Zhang 59589566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59599566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5962429d309bSHong Zhang } 5963ccd8e176SBarry Smith 5964cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5965cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5966ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59679779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5968a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5969191b95cbSRichard Tran Mills #endif 5970ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 5971cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 59725d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5973cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 59745d7652ecSHong Zhang #endif 5975d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 5976d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 5977d24d4204SJose E. Roman #endif 597863c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 597963c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 598063c07aadSStefano Zampini #endif 59813338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 59823338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 59833338378cSStefano Zampini #endif 5984d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 5985d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 5986d5e393b6SSuyash Tandon #endif 59873d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 59883d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 59893d0639e7SStefano Zampini #endif 5990d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 59914222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 59924222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 599317667f90SBarry Smith 5994fc4dec0aSBarry Smith /* 5995fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 5996fc4dec0aSBarry Smith 5997fc4dec0aSBarry Smith n p p 59982da392ccSBarry Smith [ ] [ ] [ ] 59992da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60002da392ccSBarry Smith [ ] [ ] [ ] 6001fc4dec0aSBarry Smith 6002fc4dec0aSBarry Smith */ 6003d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6004d71ae5a4SJacob Faibussowitsch { 6005fc4dec0aSBarry Smith Mat At, Bt, Ct; 6006fc4dec0aSBarry Smith 6007fc4dec0aSBarry Smith PetscFunctionBegin; 60089566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60099566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6010fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60119566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60137fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60149566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6017fc4dec0aSBarry Smith } 6018fc4dec0aSBarry Smith 6019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6020d71ae5a4SJacob Faibussowitsch { 60216718818eSStefano Zampini PetscBool cisdense; 6022fc4dec0aSBarry Smith 6023fc4dec0aSBarry Smith PetscFunctionBegin; 602408401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60269566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6027d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 602848a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60299566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6030f75ecaa4SHong Zhang 60314222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6033fc4dec0aSBarry Smith } 6034fc4dec0aSBarry Smith 6035d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6036d71ae5a4SJacob Faibussowitsch { 60374222ddf1SHong Zhang Mat_Product *product = C->product; 60384222ddf1SHong Zhang Mat A = product->A, B = product->B; 6039fc4dec0aSBarry Smith 6040fc4dec0aSBarry Smith PetscFunctionBegin; 604120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 604220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60434222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60444222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6046fc4dec0aSBarry Smith } 6047fc4dec0aSBarry Smith 6048d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6049d71ae5a4SJacob Faibussowitsch { 60504222ddf1SHong Zhang Mat_Product *product = C->product; 60514222ddf1SHong Zhang 60524222ddf1SHong Zhang PetscFunctionBegin; 605348a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60554222ddf1SHong Zhang } 6056394ed5ebSJunchao Zhang 605727430b45SBarry Smith /* 605827430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6059394ed5ebSJunchao Zhang 6060394ed5ebSJunchao Zhang Input Parameters: 6061394ed5ebSJunchao Zhang 6062651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6063651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6064394ed5ebSJunchao Zhang 6065158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6066394ed5ebSJunchao Zhang 6067394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6068394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6069394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6070394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6071394ed5ebSJunchao Zhang 6072394ed5ebSJunchao Zhang Similar for Set2. 6073394ed5ebSJunchao Zhang 6074394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6075394ed5ebSJunchao Zhang 6076158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6077394ed5ebSJunchao Zhang 6078394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6079394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6080394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6081394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6082394ed5ebSJunchao Zhang */ 6083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6084d71ae5a4SJacob Faibussowitsch { 6085394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6086394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6087394ed5ebSJunchao Zhang 6088394ed5ebSJunchao Zhang PetscFunctionBegin; 60899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6090394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6091394ed5ebSJunchao Zhang i[0] = 0; 6092394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6093394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6094394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6095394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6096394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6097394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6098394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6099394ed5ebSJunchao Zhang j[t] = j1[b1]; 6100394ed5ebSJunchao Zhang imap1[t1] = t; 6101394ed5ebSJunchao Zhang imap2[t2] = t; 6102394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6103394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61049371c9d4SSatish Balay t1++; 61059371c9d4SSatish Balay t2++; 61069371c9d4SSatish Balay t++; 6107394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6108394ed5ebSJunchao Zhang j[t] = j1[b1]; 6109394ed5ebSJunchao Zhang imap1[t1] = t; 6110394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61119371c9d4SSatish Balay t1++; 61129371c9d4SSatish Balay t++; 6113394ed5ebSJunchao Zhang } else { 6114394ed5ebSJunchao Zhang j[t] = j2[b2]; 6115394ed5ebSJunchao Zhang imap2[t2] = t; 6116394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61179371c9d4SSatish Balay t2++; 61189371c9d4SSatish Balay t++; 6119394ed5ebSJunchao Zhang } 6120394ed5ebSJunchao Zhang } 6121394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6122394ed5ebSJunchao Zhang while (b1 < e1) { 6123394ed5ebSJunchao Zhang j[t] = j1[b1]; 6124394ed5ebSJunchao Zhang imap1[t1] = t; 6125394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61269371c9d4SSatish Balay t1++; 61279371c9d4SSatish Balay t++; 6128394ed5ebSJunchao Zhang } 6129394ed5ebSJunchao Zhang while (b2 < e2) { 6130394ed5ebSJunchao Zhang j[t] = j2[b2]; 6131394ed5ebSJunchao Zhang imap2[t2] = t; 6132394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61339371c9d4SSatish Balay t2++; 61349371c9d4SSatish Balay t++; 6135394ed5ebSJunchao Zhang } 61366497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6137394ed5ebSJunchao Zhang } 61383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6139394ed5ebSJunchao Zhang } 6140394ed5ebSJunchao Zhang 614127430b45SBarry Smith /* 614227430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6143394ed5ebSJunchao Zhang 6144394ed5ebSJunchao Zhang Input Parameters: 6145394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6146394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6147394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6148394ed5ebSJunchao Zhang 6149394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6150394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6151394ed5ebSJunchao Zhang 6152394ed5ebSJunchao Zhang Output Parameters: 6153394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6154394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6155394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6156394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6157394ed5ebSJunchao Zhang 6158394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6159158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6160158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6161394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6162394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6163394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6164394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6165394ed5ebSJunchao Zhang 6166394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6167394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6168394ed5ebSJunchao Zhang 6169394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6170394ed5ebSJunchao Zhang 6171158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6172394ed5ebSJunchao Zhang */ 6173d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6174d71ae5a4SJacob Faibussowitsch { 6175394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6176394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6177394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6178394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6179394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6180394ed5ebSJunchao Zhang 6181394ed5ebSJunchao Zhang PetscFunctionBegin; 61829566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 61839566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6184394ed5ebSJunchao Zhang m = rend - rstart; 6185394ed5ebSJunchao Zhang 6186651b1cf9SStefano Zampini /* Skip negative rows */ 6187651b1cf9SStefano Zampini for (k = 0; k < n; k++) 61889371c9d4SSatish Balay if (i[k] >= 0) break; 6189394ed5ebSJunchao Zhang 6190394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6191394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6192394ed5ebSJunchao Zhang */ 6193394ed5ebSJunchao Zhang while (k < n) { 6194394ed5ebSJunchao Zhang row = i[k]; 6195394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 61969371c9d4SSatish Balay for (s = k; s < n; s++) 61979371c9d4SSatish Balay if (i[s] != row) break; 6198651b1cf9SStefano Zampini 61991690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6200394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62011690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 6202394ed5ebSJunchao Zhang } 62039566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6204158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6205394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6206394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6207394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 62088551dd9cSJunchao Zhang PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N); 6209394ed5ebSJunchao Zhang 6210394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6211394ed5ebSJunchao Zhang Atot += mid - k; 6212394ed5ebSJunchao Zhang Btot += s - mid; 6213394ed5ebSJunchao Zhang 6214651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6215394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6216394ed5ebSJunchao Zhang col = j[p]; 62179371c9d4SSatish Balay do { 62181690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62199371c9d4SSatish Balay p++; 6220651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6221394ed5ebSJunchao Zhang Annz++; 6222394ed5ebSJunchao Zhang } 6223394ed5ebSJunchao Zhang 6224651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6225394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6226394ed5ebSJunchao Zhang col = j[p]; 6227d71ae5a4SJacob Faibussowitsch do { 6228d71ae5a4SJacob Faibussowitsch p++; 6229d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6230394ed5ebSJunchao Zhang Bnnz++; 6231394ed5ebSJunchao Zhang } 6232394ed5ebSJunchao Zhang k = s; 6233394ed5ebSJunchao Zhang } 6234394ed5ebSJunchao Zhang 6235394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6236158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6237158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6238158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6239158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6240394ed5ebSJunchao Zhang 62416aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6242394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6243394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6244394ed5ebSJunchao Zhang k = rowBegin[r]; 6245394ed5ebSJunchao Zhang mid = rowMid[r]; 6246394ed5ebSJunchao Zhang s = rowEnd[r]; 62478e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 62488e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6249394ed5ebSJunchao Zhang Atot += mid - k; 6250394ed5ebSJunchao Zhang Btot += s - mid; 6251394ed5ebSJunchao Zhang 6252394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6253394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6254394ed5ebSJunchao Zhang col = j[p]; 6255394ed5ebSJunchao Zhang q = p; 6256d71ae5a4SJacob Faibussowitsch do { 6257d71ae5a4SJacob Faibussowitsch p++; 6258d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6259394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6260394ed5ebSJunchao Zhang Annz++; 6261394ed5ebSJunchao Zhang } 6262394ed5ebSJunchao Zhang 6263394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6264394ed5ebSJunchao Zhang col = j[p]; 6265394ed5ebSJunchao Zhang q = p; 6266d71ae5a4SJacob Faibussowitsch do { 6267d71ae5a4SJacob Faibussowitsch p++; 6268d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6269394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6270394ed5ebSJunchao Zhang Bnnz++; 6271394ed5ebSJunchao Zhang } 6272394ed5ebSJunchao Zhang } 6273394ed5ebSJunchao Zhang /* Output */ 6274394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6275394ed5ebSJunchao Zhang *Annz_ = Annz; 6276394ed5ebSJunchao Zhang *Atot_ = Atot; 6277394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6278394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6279394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6280394ed5ebSJunchao Zhang *Btot_ = Btot; 6281394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 62823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6283394ed5ebSJunchao Zhang } 6284394ed5ebSJunchao Zhang 628527430b45SBarry Smith /* 628627430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6287158ec288SJunchao Zhang 6288158ec288SJunchao Zhang Input Parameters: 6289158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6290158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6291158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6292651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6293158ec288SJunchao Zhang 6294158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6295158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6296158ec288SJunchao Zhang 6297158ec288SJunchao Zhang Example: 6298158ec288SJunchao Zhang nnz1 = 4 6299158ec288SJunchao Zhang nnz = 6 6300158ec288SJunchao Zhang imap = [1,3,4,5] 6301158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6302158ec288SJunchao Zhang then, 6303158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6304158ec288SJunchao Zhang */ 6305d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6306d71ae5a4SJacob Faibussowitsch { 6307158ec288SJunchao Zhang PetscCount k, p; 6308158ec288SJunchao Zhang 6309158ec288SJunchao Zhang PetscFunctionBegin; 6310158ec288SJunchao Zhang jmap_new[0] = 0; 6311158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6312158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6313158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6314158ec288SJunchao Zhang } 6315158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6317158ec288SJunchao Zhang } 6318158ec288SJunchao Zhang 631949abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63202c4ab24aSJunchao Zhang { 632149abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63222c4ab24aSJunchao Zhang 63232c4ab24aSJunchao Zhang PetscFunctionBegin; 63242c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63252c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63262c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63272c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63282c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63292c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63302c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63312c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63322c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63332c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63342c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63352c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63362c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63372c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63382c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63392c4ab24aSJunchao Zhang } 63402c4ab24aSJunchao Zhang 6341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6342d71ae5a4SJacob Faibussowitsch { 6343394ed5ebSJunchao Zhang MPI_Comm comm; 6344394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6345394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6346394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6347394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63482c4ab24aSJunchao Zhang PetscContainer container; 63492c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6350394ed5ebSJunchao Zhang 6351394ed5ebSJunchao Zhang PetscFunctionBegin; 63529566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6354cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6355eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6356cbc6b225SStefano Zampini #else 63579566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6358cbc6b225SStefano Zampini #endif 63599566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6360cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6361cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6362cbc6b225SStefano Zampini 63639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63689566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63699566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 63709566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 63719566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6372394ed5ebSJunchao Zhang 63736aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6374394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6375394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6376e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6377e8729f6fSJunchao Zhang 6378e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6379394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6380394ed5ebSJunchao Zhang 6381394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6382394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6383394ed5ebSJunchao Zhang will have positive row indices. 6384394ed5ebSJunchao Zhang */ 6385394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 63861690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 63871690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6388f7d195e4SLawrence Mitchell else { 6389f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 63901690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6391f7d195e4SLawrence Mitchell } 6392394ed5ebSJunchao Zhang } 6393394ed5ebSJunchao Zhang 6394da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 63959566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6396651b1cf9SStefano Zampini 6397651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6398651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 63991690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64006497c311SBarry Smith PetscCount i1start = k; 6401651b1cf9SStefano Zampini 64021690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64031690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6404394ed5ebSJunchao Zhang 64052b35a777SBarry Smith PetscCheck(n1 == 0 || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M); 64068551dd9cSJunchao Zhang 6407394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6408394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6409394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6410394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6411394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6412394ed5ebSJunchao Zhang const PetscInt *ranges; 6413394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6414394ed5ebSJunchao Zhang 64159566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6417394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6418394ed5ebSJunchao Zhang PetscMPIInt owner; 6419394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6420cbc6b225SStefano Zampini 6421394ed5ebSJunchao Zhang /* Locate a row range */ 6422394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64239566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6424394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6425394ed5ebSJunchao Zhang 64268551dd9cSJunchao Zhang /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */ 64279566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6428394ed5ebSJunchao Zhang 6429394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6430394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6431394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6432394ed5ebSJunchao Zhang PetscInt *nentries2; 6433394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6434cbc6b225SStefano Zampini 64359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64379566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64389566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6439394ed5ebSJunchao Zhang sendto = sendto2; 6440394ed5ebSJunchao Zhang nentries = nentries2; 6441394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6442394ed5ebSJunchao Zhang } 6443394ed5ebSJunchao Zhang sendto[nsend] = owner; 64446497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6445394ed5ebSJunchao Zhang nsend++; 6446394ed5ebSJunchao Zhang k = p; 6447394ed5ebSJunchao Zhang } 6448394ed5ebSJunchao Zhang 6449394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6450394ed5ebSJunchao Zhang PetscSF sf1; 6451394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6452394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6453394ed5ebSJunchao Zhang PetscInt *offsets; 6454394ed5ebSJunchao Zhang PetscSFNode *iremote; 6455394ed5ebSJunchao Zhang 64569566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6459394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6460394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6461394ed5ebSJunchao Zhang iremote[k].index = 0; 6462394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 646354c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6464394ed5ebSJunchao Zhang } 64659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64669566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64679566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6469e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6470394ed5ebSJunchao Zhang 6471394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6472394ed5ebSJunchao Zhang PetscSF sf2; 6473394ed5ebSJunchao Zhang nroots = nroots2; 6474394ed5ebSJunchao Zhang nleaves = nleaves2; 64759566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 64769566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 64779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6478394ed5ebSJunchao Zhang p = 0; 6479394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 648054c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6481394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6482394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 64836497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6484394ed5ebSJunchao Zhang } 6485394ed5ebSJunchao Zhang } 64869566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6487394ed5ebSJunchao Zhang 6488394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6489394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6490394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 64919566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6492834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6493834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6494de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6495de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6496834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6497834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6498834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6499834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6500394ed5ebSJunchao Zhang 65019566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65029566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6503394ed5ebSJunchao Zhang 6504394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6505394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65069566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6507394ed5ebSJunchao Zhang 6508651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6509651b1cf9SStefano Zampini PetscCount *Cperm1; 6510834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6511de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6512651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6513834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6514651b1cf9SStefano Zampini 6515651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6516651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6517651b1cf9SStefano Zampini PetscBool hypre; 651817b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6519651b1cf9SStefano Zampini if (hypre) { 6520651b1cf9SStefano Zampini PetscInt *minj; 6521651b1cf9SStefano Zampini PetscBT hasdiag; 6522651b1cf9SStefano Zampini 6523651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6524651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65251690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6526651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6527651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6528651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6529651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6530651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6531651b1cf9SStefano Zampini } 6532651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6533651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6534651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6535651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6536651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6537651b1cf9SStefano Zampini } 6538651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6539651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6540651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6541651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6542651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6543651b1cf9SStefano Zampini } 6544651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6545651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6546651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6547651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6548651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6549651b1cf9SStefano Zampini } 6550651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6551651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6552651b1cf9SStefano Zampini } 6553651b1cf9SStefano Zampini 6554651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6555651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6556651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6557651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6558394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6559394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6560394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6561394ed5ebSJunchao Zhang 6562651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65639566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6564651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65659566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6566394ed5ebSJunchao Zhang 6567394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6568394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6569394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6570394ed5ebSJunchao Zhang 65719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6575394ed5ebSJunchao Zhang 6576394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6577158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6578158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6579158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6580158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6581394ed5ebSJunchao Zhang 65829566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 65839566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6584158ec288SJunchao Zhang 6585158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6586158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6587158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6588158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6589158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6590158ec288SJunchao Zhang 6591158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6592158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6593158ec288SJunchao Zhang 6594158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6595158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6596158ec288SJunchao Zhang 6597158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6598158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6599158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6600158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66019566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66029566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6603e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66049566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6605394ed5ebSJunchao Zhang 6606158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6607158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6608158ec288SJunchao Zhang 6609394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6610394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6611394ed5ebSJunchao Zhang PetscInt *Aj_new; 66129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66139566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66149566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6615394ed5ebSJunchao Zhang Aj = Aj_new; 6616394ed5ebSJunchao Zhang } 6617394ed5ebSJunchao Zhang 6618394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6619394ed5ebSJunchao Zhang PetscInt *Bj_new; 66209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66229566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6623394ed5ebSJunchao Zhang Bj = Bj_new; 6624394ed5ebSJunchao Zhang } 6625394ed5ebSJunchao Zhang 6626cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6627394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6628cbc6b225SStefano Zampini MatType rtype; 6629394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6630cf8ba265SJunchao Zhang PetscObjectState state; 66319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6633394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66349371c9d4SSatish Balay if (cstart) { 66359371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66369371c9d4SSatish Balay } 6637c508b908SBarry Smith 66389566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6639c508b908SBarry Smith 6640c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6641c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 66429566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66430da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6644c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6645c508b908SBarry Smith 6646c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6647c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 66489566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66490da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6650c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6651c508b908SBarry Smith 66529566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66535bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6654cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6655462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6656cbc6b225SStefano Zampini 6657394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6658394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 66599f0612e4SBarry Smith a->free_a = PETSC_TRUE; 66609f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 66619f0612e4SBarry Smith b->free_a = PETSC_TRUE; 66629f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 666317b874c6SStefano Zampini a->maxnz = a->nz; 666417b874c6SStefano Zampini b->maxnz = b->nz; 6665394ed5ebSJunchao Zhang 6666cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66679566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66689566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66709566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6671cbc6b225SStefano Zampini 66722c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66732c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66742c4ab24aSJunchao Zhang coo->n = coo_n; 66752c4ab24aSJunchao Zhang coo->sf = sf2; 66762c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66772c4ab24aSJunchao Zhang coo->recvlen = nroots; 66782c4ab24aSJunchao Zhang coo->Annz = Annz; 66792c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66802c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66812c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66822c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 66832c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 66842c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 66852c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 66862c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 66872c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 66882c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 66892c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 66902c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 66912c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 66922c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 66932c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 66942c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 66952c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 66962c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 66972c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 66982c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 66992c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67002c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 670149abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67022c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67032c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6705394ed5ebSJunchao Zhang } 6706394ed5ebSJunchao Zhang 6707d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6708d71ae5a4SJacob Faibussowitsch { 6709394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6710394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6711394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67122c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67132c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67142c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67152c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67162c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67172c4ab24aSJunchao Zhang PetscContainer container; 67182c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6719394ed5ebSJunchao Zhang 6720394ed5ebSJunchao Zhang PetscFunctionBegin; 67212c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67222c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67232c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67242c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67252c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67262c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67272c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67282c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67292c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67302c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67312c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67322c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67332c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67342c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67352c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67362c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67372c4ab24aSJunchao Zhang 67389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6740394ed5ebSJunchao Zhang 6741394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67422c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6743394ed5ebSJunchao Zhang 6744394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67452c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6746394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67472c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6748da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6749158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6750158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6751394ed5ebSJunchao Zhang } 67522c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6753158ec288SJunchao Zhang PetscScalar sum = 0.0; 6754158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6755158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6756394ed5ebSJunchao Zhang } 67572c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6758394ed5ebSJunchao Zhang 6759394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67602c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6761394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6762394ed5ebSJunchao Zhang } 67632c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6764394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6765394ed5ebSJunchao Zhang } 67669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6769394ed5ebSJunchao Zhang } 6770394ed5ebSJunchao Zhang 6771ccd8e176SBarry Smith /*MC 6772ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6773ccd8e176SBarry Smith 6774ccd8e176SBarry Smith Options Database Keys: 677511a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6776ccd8e176SBarry Smith 6777ccd8e176SBarry Smith Level: beginner 67780cd7f59aSBarry Smith 67790cd7f59aSBarry Smith Notes: 67802ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67810cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67820cd7f59aSBarry Smith in the matrix 67830cd7f59aSBarry Smith 678411a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 678511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6786ccd8e176SBarry Smith 67871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6788ccd8e176SBarry Smith M*/ 6789d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6790d71ae5a4SJacob Faibussowitsch { 6791ccd8e176SBarry Smith Mat_MPIAIJ *b; 6792ccd8e176SBarry Smith PetscMPIInt size; 6793ccd8e176SBarry Smith 6794ccd8e176SBarry Smith PetscFunctionBegin; 67959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 67962205254eSKarl Rupp 67974dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6798ccd8e176SBarry Smith B->data = (void *)b; 6799aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6800ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6801ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6802ccd8e176SBarry Smith b->size = size; 68032205254eSKarl Rupp 68049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6805ccd8e176SBarry Smith 6806ccd8e176SBarry Smith /* build cache for off array entries formed */ 68079566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68082205254eSKarl Rupp 6809ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6810f4259b30SLisandro Dalcin b->colmap = NULL; 6811f4259b30SLisandro Dalcin b->garray = NULL; 6812ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6813ccd8e176SBarry Smith 6814ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68150298fd71SBarry Smith b->lvec = NULL; 68160298fd71SBarry Smith b->Mvctx = NULL; 6817ccd8e176SBarry Smith 6818ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6819f4259b30SLisandro Dalcin b->rowindices = NULL; 6820f4259b30SLisandro Dalcin b->rowvalues = NULL; 6821ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6822ccd8e176SBarry Smith 6823f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68240298fd71SBarry Smith b->spptr = NULL; 6825f60c3dc2SHong Zhang 68269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6832674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68373d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68393d0639e7SStefano Zampini #endif 6840d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6841d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6842d5e393b6SSuyash Tandon #endif 68433d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68453d0639e7SStefano Zampini #endif 68469779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6848191b95cbSRichard Tran Mills #endif 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68535d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68555d7652ecSHong Zhang #endif 6856d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 68579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6858d24d4204SJose E. Roman #endif 68599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68613dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68643dad0653Sstefano_zampini #endif 68659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6871ccd8e176SBarry Smith } 687281824310SBarry Smith 68735d83a8b1SBarry Smith /*@ 687411a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 687503bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 687603bfb495SBarry Smith 6877d083f849SBarry Smith Collective 687803bfb495SBarry Smith 687903bfb495SBarry Smith Input Parameters: 688003bfb495SBarry Smith + comm - MPI communicator 688111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 688203bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6883d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 68842ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 68852ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 68862ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6887483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 688804ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 688903bfb495SBarry Smith . a - matrix values 6890483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 68912ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 689203bfb495SBarry Smith - oa - matrix values 689303bfb495SBarry Smith 689403bfb495SBarry Smith Output Parameter: 689503bfb495SBarry Smith . mat - the matrix 689603bfb495SBarry Smith 689703bfb495SBarry Smith Level: advanced 689803bfb495SBarry Smith 689903bfb495SBarry Smith Notes: 6900f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6901292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 690203bfb495SBarry Smith 69032ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 690403bfb495SBarry Smith 69052ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 690603bfb495SBarry Smith 69077b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69087b55108eSBarry Smith 6909dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6910dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6911dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6912dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 691311a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6914dca341c0SJed Brown communication if it is known that only local entries will be set. 691503bfb495SBarry Smith 69161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6917db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69182b26979fSBarry Smith @*/ 6919d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6920d71ae5a4SJacob Faibussowitsch { 692103bfb495SBarry Smith Mat_MPIAIJ *maij; 692203bfb495SBarry Smith 692303bfb495SBarry Smith PetscFunctionBegin; 692408401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6925aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6926aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69279566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69299566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 693003bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69312205254eSKarl Rupp 69328d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 693303bfb495SBarry Smith 69349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 693603bfb495SBarry Smith 69379566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69389566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 693903bfb495SBarry Smith 69409566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69439566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69449566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 694603bfb495SBarry Smith } 694703bfb495SBarry Smith 69484e84afc0SStefano Zampini typedef struct { 69494e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69504e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69514e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69524e84afc0SStefano Zampini 69534e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69544e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69554e84afc0SStefano Zampini PetscScalar *bufa; 69564e84afc0SStefano Zampini Mat P_oth; 69574e84afc0SStefano Zampini 69584e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6959ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69604e84afc0SStefano Zampini 6961ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69624e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69634e84afc0SStefano Zampini of the temporary storage */ 69644e84afc0SStefano Zampini PetscBool reusesym; 69654e84afc0SStefano Zampini 69664e84afc0SStefano Zampini /* support for COO values insertion */ 6967ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6968ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6969ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6970ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6971c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6972c215019aSStefano Zampini PetscMemType mtype; 69734e84afc0SStefano Zampini 69744e84afc0SStefano Zampini /* customization */ 69754e84afc0SStefano Zampini PetscBool abmerge; 6976abb89eb1SStefano Zampini PetscBool P_oth_bind; 69774e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69784e84afc0SStefano Zampini 6979cc1eb50dSBarry Smith static PetscErrorCode MatProductCtxDestroy_MatMatMPIAIJBACKEND(void **data) 6980d71ae5a4SJacob Faibussowitsch { 6981cc1eb50dSBarry Smith MatMatMPIAIJBACKEND *mmdata = *(MatMatMPIAIJBACKEND **)data; 69824e84afc0SStefano Zampini PetscInt i; 69834e84afc0SStefano Zampini 69844e84afc0SStefano Zampini PetscFunctionBegin; 69859566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 69869566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 69879566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 69889566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 69899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 69909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 69919566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 699248a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 69939566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 69949566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 69959566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 69969566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 69979566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 69989566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 69993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70004e84afc0SStefano Zampini } 70014e84afc0SStefano Zampini 7002fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7003fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7004fff043a9SJunchao Zhang */ 7005d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7006d71ae5a4SJacob Faibussowitsch { 7007c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7008c215019aSStefano Zampini 7009c215019aSStefano Zampini PetscFunctionBegin; 70109566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7011c215019aSStefano Zampini if (f) { 70129566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7013c215019aSStefano Zampini } else { 7014c215019aSStefano Zampini const PetscScalar *vv; 7015c215019aSStefano Zampini 70169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7017c215019aSStefano Zampini if (n && idx) { 7018c215019aSStefano Zampini PetscScalar *w = v; 7019c215019aSStefano Zampini const PetscInt *oi = idx; 7020c215019aSStefano Zampini PetscInt j; 7021c215019aSStefano Zampini 7022c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7023c215019aSStefano Zampini } else { 70249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7025c215019aSStefano Zampini } 70269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7027c215019aSStefano Zampini } 70283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7029c215019aSStefano Zampini } 7030c215019aSStefano Zampini 7031d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7032d71ae5a4SJacob Faibussowitsch { 70334e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70344e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70354e84afc0SStefano Zampini 70364e84afc0SStefano Zampini PetscFunctionBegin; 70374e84afc0SStefano Zampini MatCheckProduct(C, 1); 703828b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70394e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70404e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 704148a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 704248a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70434e84afc0SStefano Zampini } 70444e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7045abb89eb1SStefano Zampini 7046abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 704708401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70489566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7049abb89eb1SStefano Zampini } 70504e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70516497c311SBarry Smith PetscInt noff; 70524e84afc0SStefano Zampini 70536497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 70544e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70554e84afc0SStefano Zampini if (noff) { 70566497c311SBarry Smith PetscInt nown; 7057c215019aSStefano Zampini 70586497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 70599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70614e84afc0SStefano Zampini n_o += noff; 70624e84afc0SStefano Zampini n_d += nown; 70634e84afc0SStefano Zampini } else { 7064c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7065c215019aSStefano Zampini 70669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70674e84afc0SStefano Zampini n_d += mm->nz; 70684e84afc0SStefano Zampini } 70694e84afc0SStefano Zampini } 7070c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70719566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70729566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70734e84afc0SStefano Zampini } 70749566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70764e84afc0SStefano Zampini } 70774e84afc0SStefano Zampini 70784e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70794e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7080d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7081d71ae5a4SJacob Faibussowitsch { 70824e84afc0SStefano Zampini Mat_Product *product = C->product; 7083ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 70844e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 70854e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70864e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 70874e84afc0SStefano Zampini IS glob = NULL; 70884e84afc0SStefano Zampini const char *prefix; 70894e84afc0SStefano Zampini char pprefix[256]; 70904e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 709182a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 709282a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7093ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7094ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7095ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7096ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7097ddea5d60SJunchao Zhang 70984e84afc0SStefano Zampini MatProductType ptype; 7099d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71004e84afc0SStefano Zampini PetscMPIInt size; 71014e84afc0SStefano Zampini 71024e84afc0SStefano Zampini PetscFunctionBegin; 71034e84afc0SStefano Zampini MatCheckProduct(C, 1); 710428b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71054e84afc0SStefano Zampini ptype = product->type; 7106b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7107fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7108fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7109fa046f9fSJunchao Zhang } 71104e84afc0SStefano Zampini switch (ptype) { 71114e84afc0SStefano Zampini case MATPRODUCT_AB: 71124e84afc0SStefano Zampini A = product->A; 71134e84afc0SStefano Zampini P = product->B; 71144e84afc0SStefano Zampini m = A->rmap->n; 71154e84afc0SStefano Zampini n = P->cmap->n; 71164e84afc0SStefano Zampini M = A->rmap->N; 71174e84afc0SStefano Zampini N = P->cmap->N; 7118ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71194e84afc0SStefano Zampini break; 71204e84afc0SStefano Zampini case MATPRODUCT_AtB: 71214e84afc0SStefano Zampini P = product->A; 71224e84afc0SStefano Zampini A = product->B; 71234e84afc0SStefano Zampini m = P->cmap->n; 71244e84afc0SStefano Zampini n = A->cmap->n; 71254e84afc0SStefano Zampini M = P->cmap->N; 71264e84afc0SStefano Zampini N = A->cmap->N; 71274e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71284e84afc0SStefano Zampini break; 71294e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71304e84afc0SStefano Zampini A = product->A; 71314e84afc0SStefano Zampini P = product->B; 71324e84afc0SStefano Zampini m = P->cmap->n; 71334e84afc0SStefano Zampini n = P->cmap->n; 71344e84afc0SStefano Zampini M = P->cmap->N; 71354e84afc0SStefano Zampini N = P->cmap->N; 71364e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71374e84afc0SStefano Zampini break; 7138d71ae5a4SJacob Faibussowitsch default: 7139d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71404e84afc0SStefano Zampini } 71419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71424e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71434e84afc0SStefano Zampini 71444e84afc0SStefano Zampini /* defaults */ 71454e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71464e84afc0SStefano Zampini mp[i] = NULL; 71474e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71484e84afc0SStefano Zampini rmapt[i] = -1; 71494e84afc0SStefano Zampini cmapt[i] = -1; 71504e84afc0SStefano Zampini rmapa[i] = NULL; 71514e84afc0SStefano Zampini cmapa[i] = NULL; 71524e84afc0SStefano Zampini } 71534e84afc0SStefano Zampini 71544e84afc0SStefano Zampini /* customization */ 71559566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71564e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71574e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71584e84afc0SStefano Zampini if (product->api_user) { 7159d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71609566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7162d0609cedSBarry Smith PetscOptionsEnd(); 71634e84afc0SStefano Zampini } else { 7164d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7167d0609cedSBarry Smith PetscOptionsEnd(); 7168abb89eb1SStefano Zampini } 7169abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7170abb89eb1SStefano Zampini if (product->api_user) { 7171d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71729566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7173d0609cedSBarry Smith PetscOptionsEnd(); 7174abb89eb1SStefano Zampini } else { 7175d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71769566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7177d0609cedSBarry Smith PetscOptionsEnd(); 71784e84afc0SStefano Zampini } 71794e84afc0SStefano Zampini } 71804e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71814e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 71839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 71849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 71859566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 71869566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7187ddea5d60SJunchao Zhang 7188ddea5d60SJunchao Zhang cp = 0; 71894e84afc0SStefano Zampini switch (ptype) { 71904e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 71919566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 71924e84afc0SStefano Zampini 7193ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7194ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 71954e84afc0SStefano Zampini /* P is product->B */ 71969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 71979566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 71989566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 71999566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72009566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72019566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72029566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72034e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72049566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72059566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72074e84afc0SStefano Zampini rmapt[cp] = 1; 72084e84afc0SStefano Zampini cmapt[cp] = 2; 72094e84afc0SStefano Zampini cmapa[cp] = globidx; 72104e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72114e84afc0SStefano Zampini cp++; 7212ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72139566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72149566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72159566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72169566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72179566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72189566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72194e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72209566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72219566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72224e84afc0SStefano Zampini rmapt[cp] = 1; 72234e84afc0SStefano Zampini cmapt[cp] = 1; 72244e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72254e84afc0SStefano Zampini cp++; 72269566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72279566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72289566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72299566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72309566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72319566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72324e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72339566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72349566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72354e84afc0SStefano Zampini rmapt[cp] = 1; 72364e84afc0SStefano Zampini cmapt[cp] = 2; 72374e84afc0SStefano Zampini cmapa[cp] = p->garray; 72384e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72394e84afc0SStefano Zampini cp++; 72404e84afc0SStefano Zampini } 7241ddea5d60SJunchao Zhang 7242ddea5d60SJunchao Zhang /* A_off * P_other */ 72434e84afc0SStefano Zampini if (mmdata->P_oth) { 72449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72459566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7246f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 72479566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72489566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72499566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72509566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72519566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72529566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72539566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72544e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72559566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72569566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72574e84afc0SStefano Zampini rmapt[cp] = 1; 72584e84afc0SStefano Zampini cmapt[cp] = 2; 72594e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72604e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72614e84afc0SStefano Zampini cp++; 72624e84afc0SStefano Zampini } 72634e84afc0SStefano Zampini break; 7264ddea5d60SJunchao Zhang 72654e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72664e84afc0SStefano Zampini /* A is product->B */ 72679566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7268ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72699566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72709566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72719566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72729566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72739566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72749566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72754e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72769566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72779566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72789566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72794e84afc0SStefano Zampini rmapt[cp] = 2; 72804e84afc0SStefano Zampini rmapa[cp] = globidx; 72814e84afc0SStefano Zampini cmapt[cp] = 2; 72824e84afc0SStefano Zampini cmapa[cp] = globidx; 72834e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72844e84afc0SStefano Zampini cp++; 72854e84afc0SStefano Zampini } else { 72869566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72899566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72909566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72919566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72924e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72964e84afc0SStefano Zampini rmapt[cp] = 1; 72974e84afc0SStefano Zampini cmapt[cp] = 2; 72984e84afc0SStefano Zampini cmapa[cp] = globidx; 72994e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73004e84afc0SStefano Zampini cp++; 73019566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73029566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73039566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73049566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73059566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73069566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73074e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73089566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73099566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73104e84afc0SStefano Zampini rmapt[cp] = 2; 73114e84afc0SStefano Zampini rmapa[cp] = p->garray; 73124e84afc0SStefano Zampini cmapt[cp] = 2; 73134e84afc0SStefano Zampini cmapa[cp] = globidx; 73144e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73154e84afc0SStefano Zampini cp++; 73164e84afc0SStefano Zampini } 73174e84afc0SStefano Zampini break; 73184e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73199566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73204e84afc0SStefano Zampini /* P is product->B */ 73219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73229566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73239566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73249566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73259566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73269566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73279566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73284e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73309566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73324e84afc0SStefano Zampini rmapt[cp] = 2; 73334e84afc0SStefano Zampini rmapa[cp] = globidx; 73344e84afc0SStefano Zampini cmapt[cp] = 2; 73354e84afc0SStefano Zampini cmapa[cp] = globidx; 73364e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73374e84afc0SStefano Zampini cp++; 73384e84afc0SStefano Zampini if (mmdata->P_oth) { 73399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73409566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7341f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73429566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73439566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73459566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73469566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73479566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73489566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73494e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73509566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73519566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73524e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73534e84afc0SStefano Zampini cp++; 73549566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73559566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73569566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73579566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73589566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73599566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73604e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73629566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73634e84afc0SStefano Zampini rmapt[cp] = 2; 73644e84afc0SStefano Zampini rmapa[cp] = globidx; 73654e84afc0SStefano Zampini cmapt[cp] = 2; 73664e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73674e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73684e84afc0SStefano Zampini cp++; 73694e84afc0SStefano Zampini } 73704e84afc0SStefano Zampini break; 7371d71ae5a4SJacob Faibussowitsch default: 7372d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73734e84afc0SStefano Zampini } 73744e84afc0SStefano Zampini /* sanity check */ 73759371c9d4SSatish Balay if (size > 1) 73769371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73774e84afc0SStefano Zampini 73789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7379ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7380ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7381ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7382ddea5d60SJunchao Zhang } 73834e84afc0SStefano Zampini mmdata->cp = cp; 73844e84afc0SStefano Zampini C->product->data = mmdata; 7385cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MatMatMPIAIJBACKEND; 73864e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 73874e84afc0SStefano Zampini 7388c215019aSStefano Zampini /* memory type */ 7389c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 73909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7391d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 73929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7393c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7394d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 73953214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7396c215019aSStefano Zampini 73974e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7398ddea5d60SJunchao Zhang 7399ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7400ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7401ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7402ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7403ddea5d60SJunchao Zhang */ 74044e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74054e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74064e84afc0SStefano Zampini if (mptmp[cp]) continue; 7407ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74084e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74094e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74104e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74114e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74124e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74134e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74144e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74154e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7416ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7417ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74184e84afc0SStefano Zampini } 74194e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74204e84afc0SStefano Zampini } 7421ddea5d60SJunchao Zhang 7422ddea5d60SJunchao Zhang /* 7423ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7424ddea5d60SJunchao Zhang 7425ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7426ddea5d60SJunchao Zhang 7427d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7428ddea5d60SJunchao Zhang 7429ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7430ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7431ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7432ddea5d60SJunchao Zhang 7433ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7434da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7435ddea5d60SJunchao Zhang */ 74369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7438ddea5d60SJunchao Zhang 7439ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7440ddea5d60SJunchao Zhang if (hasoffproc) { 74414e84afc0SStefano Zampini PetscSF msf; 74424e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74434e84afc0SStefano Zampini 74449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7447ddea5d60SJunchao Zhang 74484e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74494e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74504e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74514e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7452ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74534e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74544e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74554e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74564e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74574e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74584e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74594e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74604e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74614e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74624e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74634e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74644e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74654e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7466ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74674e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74684e84afc0SStefano Zampini *coi++ = gr; 74694e84afc0SStefano Zampini *idxoff++ = j; 74704e84afc0SStefano Zampini } 74714e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74724e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74734e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74744e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74754e84afc0SStefano Zampini } else { /* offdiag */ 74764e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74774e84afc0SStefano Zampini } 74784e84afc0SStefano Zampini ncoo_o += nz; 7479ddea5d60SJunchao Zhang } else { /* this is a local row */ 74804e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74814e84afc0SStefano Zampini } 74824e84afc0SStefano Zampini } 74834e84afc0SStefano Zampini } 74844e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 74854e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 74864e84afc0SStefano Zampini } 74874e84afc0SStefano Zampini 74889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 74896497c311SBarry Smith PetscInt incoo_o; 74906497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 74916497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 74929566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 74939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 74944e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 74959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 74969566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 74979566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 74989566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 74999566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75009566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7501ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75029566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75034e84afc0SStefano Zampini coo_i = coo_i2; 75044e84afc0SStefano Zampini coo_j = coo_j2; 75054e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75064e84afc0SStefano Zampini ncoo = ncoo_d; 75079566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7508c215019aSStefano Zampini 75099566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75119566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75124e84afc0SStefano Zampini } 7513c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75144e84afc0SStefano Zampini 7515ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75164e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75174e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75184e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75194e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75204e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75214e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75224e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75234e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75244e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75254e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75264e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75274e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75284e84afc0SStefano Zampini 75294e84afc0SStefano Zampini if (mptmp[cp]) continue; 7530ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7531ddea5d60SJunchao Zhang /* fill coo_i */ 75324e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75334e84afc0SStefano Zampini const PetscInt gr = i + rs; 75344e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75354e84afc0SStefano Zampini } 7536ddea5d60SJunchao Zhang /* fill coo_j */ 7537ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7539ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7540ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7541ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75424e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75434e84afc0SStefano Zampini } 75444e84afc0SStefano Zampini ncoo_d += mm->nz; 7545ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75464e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75474e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75484e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75494e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7550ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75514e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7552ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75534e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75544e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75554e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7556ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75574e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75584e84afc0SStefano Zampini } 75594e84afc0SStefano Zampini ncoo_d += nz; 75604e84afc0SStefano Zampini } 75614e84afc0SStefano Zampini } 75624e84afc0SStefano Zampini } 75634e84afc0SStefano Zampini } 756448a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 756648a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75679566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7568ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75699566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75704e84afc0SStefano Zampini 757139cfb508SMark Adams /* set block sizes */ 757239cfb508SMark Adams A = product->A; 757339cfb508SMark Adams P = product->B; 757439cfb508SMark Adams switch (ptype) { 757539cfb508SMark Adams case MATPRODUCT_PtAP: 757658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 757739cfb508SMark Adams break; 757839cfb508SMark Adams case MATPRODUCT_RARt: 757958b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 758039cfb508SMark Adams break; 758139cfb508SMark Adams case MATPRODUCT_ABC: 758239cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 758339cfb508SMark Adams break; 758439cfb508SMark Adams case MATPRODUCT_AB: 758539cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 758639cfb508SMark Adams break; 758739cfb508SMark Adams case MATPRODUCT_AtB: 758858b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 758939cfb508SMark Adams break; 759039cfb508SMark Adams case MATPRODUCT_ABt: 759158b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 759239cfb508SMark Adams break; 759339cfb508SMark Adams default: 759439cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 759539cfb508SMark Adams } 759639cfb508SMark Adams 75974e84afc0SStefano Zampini /* preallocate with COO data */ 75989566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 75999566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76014e84afc0SStefano Zampini } 76024e84afc0SStefano Zampini 7603d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7604d71ae5a4SJacob Faibussowitsch { 76054e84afc0SStefano Zampini Mat_Product *product = mat->product; 76064e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76074e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7608abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76094e84afc0SStefano Zampini #else 76104e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76114e84afc0SStefano Zampini #endif 76124e84afc0SStefano Zampini 76134e84afc0SStefano Zampini PetscFunctionBegin; 76144e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76154e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 761648a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 761765e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7618abb89eb1SStefano Zampini switch (product->type) { 7619abb89eb1SStefano Zampini case MATPRODUCT_AB: 7620abb89eb1SStefano Zampini if (product->api_user) { 7621d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7623d0609cedSBarry Smith PetscOptionsEnd(); 7624abb89eb1SStefano Zampini } else { 7625d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76269566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7627d0609cedSBarry Smith PetscOptionsEnd(); 7628abb89eb1SStefano Zampini } 7629abb89eb1SStefano Zampini break; 7630abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7631abb89eb1SStefano Zampini if (product->api_user) { 7632d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7634d0609cedSBarry Smith PetscOptionsEnd(); 7635abb89eb1SStefano Zampini } else { 7636d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76379566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7638d0609cedSBarry Smith PetscOptionsEnd(); 7639abb89eb1SStefano Zampini } 7640abb89eb1SStefano Zampini break; 7641abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7642abb89eb1SStefano Zampini if (product->api_user) { 7643d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76449566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7645d0609cedSBarry Smith PetscOptionsEnd(); 7646abb89eb1SStefano Zampini } else { 7647d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76489566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7649d0609cedSBarry Smith PetscOptionsEnd(); 7650abb89eb1SStefano Zampini } 7651abb89eb1SStefano Zampini break; 7652d71ae5a4SJacob Faibussowitsch default: 7653d71ae5a4SJacob Faibussowitsch break; 7654abb89eb1SStefano Zampini } 7655abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7656abb89eb1SStefano Zampini } 76574e84afc0SStefano Zampini #endif 76584e84afc0SStefano Zampini if (match) { 76594e84afc0SStefano Zampini switch (product->type) { 76604e84afc0SStefano Zampini case MATPRODUCT_AB: 76614e84afc0SStefano Zampini case MATPRODUCT_AtB: 7662d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7663d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7664d71ae5a4SJacob Faibussowitsch break; 7665d71ae5a4SJacob Faibussowitsch default: 7666d71ae5a4SJacob Faibussowitsch break; 76674e84afc0SStefano Zampini } 76684e84afc0SStefano Zampini } 76694e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76709566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 767281824310SBarry Smith } 767398921bdaSJacob Faibussowitsch 767498921bdaSJacob Faibussowitsch /* 767572833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 767672833a62Smarkadams4 767772833a62Smarkadams4 n - the number of block indices in cc[] 767872833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 767972833a62Smarkadams4 */ 7680d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7681d71ae5a4SJacob Faibussowitsch { 768272833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 768372833a62Smarkadams4 const PetscInt *idx; 768472833a62Smarkadams4 768572833a62Smarkadams4 PetscFunctionBegin; 768672833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 768772833a62Smarkadams4 if (nidx) { 768872833a62Smarkadams4 cnt = 0; 768972833a62Smarkadams4 cc[cnt] = idx[0] / bs; 769072833a62Smarkadams4 for (j = 1; j < nidx; j++) { 769172833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 769272833a62Smarkadams4 } 769372833a62Smarkadams4 } 769472833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 769572833a62Smarkadams4 *n = cnt + 1; 76963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769772833a62Smarkadams4 } 769872833a62Smarkadams4 769972833a62Smarkadams4 /* 770072833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 770172833a62Smarkadams4 770272833a62Smarkadams4 ncollapsed - the number of block indices 770372833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 770472833a62Smarkadams4 */ 7705d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7706d71ae5a4SJacob Faibussowitsch { 770772833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 770872833a62Smarkadams4 770972833a62Smarkadams4 PetscFunctionBegin; 771072833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 771172833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 771272833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 771372833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77149371c9d4SSatish Balay cprevtmp = cprev; 77159371c9d4SSatish Balay cprev = merged; 77169371c9d4SSatish Balay merged = cprevtmp; 771772833a62Smarkadams4 } 771872833a62Smarkadams4 *ncollapsed = nprev; 771972833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772172833a62Smarkadams4 } 772272833a62Smarkadams4 77232d776b49SBarry Smith /* 772472833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 772572833a62Smarkadams4 772672833a62Smarkadams4 Input Parameter: 772772833a62Smarkadams4 . Amat - matrix 772872833a62Smarkadams4 - symmetrize - make the result symmetric 772972833a62Smarkadams4 + scale - scale with diagonal 773072833a62Smarkadams4 773172833a62Smarkadams4 Output Parameter: 773272833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 773372833a62Smarkadams4 773472833a62Smarkadams4 */ 7735e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7736d71ae5a4SJacob Faibussowitsch { 773772833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 773872833a62Smarkadams4 MPI_Comm comm; 773972833a62Smarkadams4 Mat Gmat; 774072833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 774172833a62Smarkadams4 Mat a, b, c; 774272833a62Smarkadams4 MatType jtype; 774372833a62Smarkadams4 774472833a62Smarkadams4 PetscFunctionBegin; 774572833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 774672833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 774772833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 774872833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 774972833a62Smarkadams4 nloc = (Iend - Istart) / bs; 775072833a62Smarkadams4 775172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 775272833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 775372833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 775472833a62Smarkadams4 775572833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 775672833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 775772833a62Smarkadams4 implementation */ 775872833a62Smarkadams4 if (bs > 1) { 775972833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 776072833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 776172833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 776272833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 776372833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 776472833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 776572833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77662cf69117Smarkadams4 MatScalar *aa, val, *AA; 77672cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77686497c311SBarry Smith 77699371c9d4SSatish Balay if (isseqaij) { 77709371c9d4SSatish Balay a = Amat; 77719371c9d4SSatish Balay b = NULL; 77729371c9d4SSatish Balay } else { 777372833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77749371c9d4SSatish Balay a = d->A; 77759371c9d4SSatish Balay b = d->B; 777672833a62Smarkadams4 } 777772833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 777832603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 777972833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77802cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 778159ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 77826497c311SBarry Smith 778359ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 778459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 778559ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 778659ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 778772833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 778859ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 778959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 779059ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 779159ee9f9fSPierre Jolivet else { 779259ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 779359ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 779459ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 779572833a62Smarkadams4 } 779659ee9f9fSPierre Jolivet } 779759ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 779859ee9f9fSPierre Jolivet } 779959ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 780072833a62Smarkadams4 if (!ok) { 780172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 780259ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 780372833a62Smarkadams4 goto old_bs; 780472833a62Smarkadams4 } 780572833a62Smarkadams4 } 780672833a62Smarkadams4 } 780772833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 780872833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 780972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78102cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 781172833a62Smarkadams4 // diag 781272833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 781372833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78146497c311SBarry Smith 781572833a62Smarkadams4 ai = aseq->i; 781672833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 781772833a62Smarkadams4 aj = aseq->j + ai[brow]; 78186497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 781972833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 782072833a62Smarkadams4 val = 0; 7821e02fb3cdSMark Adams if (index_size == 0) { 78226497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 782372833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78246497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 782572833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 782672833a62Smarkadams4 } 782772833a62Smarkadams4 } 7828e02fb3cdSMark Adams } else { // use (index,index) value if provided 78296497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78306497c311SBarry Smith PetscInt ii = index[iii]; 7831e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78326497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78336497c311SBarry Smith PetscInt jj = index[jjj]; 7834cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7835e02fb3cdSMark Adams } 7836e02fb3cdSMark Adams } 7837e02fb3cdSMark Adams } 7838835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 783972833a62Smarkadams4 AA[k / bs] = val; 784072833a62Smarkadams4 } 784172833a62Smarkadams4 grow = Istart / bs + brow / bs; 784266521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 784372833a62Smarkadams4 } 784472833a62Smarkadams4 // off-diag 784572833a62Smarkadams4 if (ismpiaij) { 784672833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 784772833a62Smarkadams4 const PetscScalar *vals; 784872833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78496497c311SBarry Smith 785072833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 785172833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 785272833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78536497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 785459ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 785572833a62Smarkadams4 AA[k / bs] = 0; 785672833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 785772833a62Smarkadams4 } 785872833a62Smarkadams4 nc = ncols / bs; 785972833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7860e02fb3cdSMark Adams if (index_size == 0) { 78616497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 786272833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78636497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78646497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7865835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 786672833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 786772833a62Smarkadams4 } 786872833a62Smarkadams4 } 786972833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 787072833a62Smarkadams4 } 7871e02fb3cdSMark Adams } else { // use (index,index) value if provided 78726497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78736497c311SBarry Smith PetscInt ii = index[iii]; 7874e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78756497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78766497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 78776497c311SBarry Smith PetscInt jj = index[jjj]; 7878e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7879e02fb3cdSMark Adams } 7880e02fb3cdSMark Adams } 7881e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7882e02fb3cdSMark Adams } 7883e02fb3cdSMark Adams } 788472833a62Smarkadams4 grow = Istart / bs + brow / bs; 788566521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 788672833a62Smarkadams4 } 788772833a62Smarkadams4 } 788872833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 788972833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 78902cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 789172833a62Smarkadams4 } else { 789272833a62Smarkadams4 const PetscScalar *vals; 789372833a62Smarkadams4 const PetscInt *idx; 789472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 789572833a62Smarkadams4 old_bs: 789672833a62Smarkadams4 /* 789772833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 789872833a62Smarkadams4 */ 789972833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 790032603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 790172833a62Smarkadams4 if (isseqaij) { 790272833a62Smarkadams4 PetscInt max_d_nnz; 79036497c311SBarry Smith 790472833a62Smarkadams4 /* 790572833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 790672833a62Smarkadams4 */ 790772833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 790872833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 790972833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 791048a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 791172833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 791272833a62Smarkadams4 } else if (ismpiaij) { 791372833a62Smarkadams4 Mat Daij, Oaij; 791472833a62Smarkadams4 const PetscInt *garray; 791572833a62Smarkadams4 PetscInt max_d_nnz; 79166497c311SBarry Smith 791772833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 791872833a62Smarkadams4 /* 791972833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 792072833a62Smarkadams4 */ 792172833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 792272833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792372833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792448a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792572833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792672833a62Smarkadams4 /* 792772833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 792872833a62Smarkadams4 */ 792972833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 793072833a62Smarkadams4 o_nnz[jj] = 0; 793172833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 793272833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 793372833a62Smarkadams4 o_nnz[jj] += ncols; 793472833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 793572833a62Smarkadams4 } 793672833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 793772833a62Smarkadams4 } 793872833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 793972833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 794072833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 794172833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 794272833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 794372833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 794472833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79456497c311SBarry Smith 794672833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 794772833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 794872833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 794972833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79506497c311SBarry Smith 795172833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 795272833a62Smarkadams4 } 795372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 795472833a62Smarkadams4 } 795572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 795672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 795772833a62Smarkadams4 } 795872833a62Smarkadams4 } else { 79592d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79602d776b49SBarry Smith else { 79612d776b49SBarry Smith Gmat = Amat; 79622d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79632d776b49SBarry Smith } 79649371c9d4SSatish Balay if (isseqaij) { 79659371c9d4SSatish Balay a = Gmat; 79669371c9d4SSatish Balay b = NULL; 79679371c9d4SSatish Balay } else { 796872833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79699371c9d4SSatish Balay a = d->A; 79709371c9d4SSatish Balay b = d->B; 797172833a62Smarkadams4 } 79722d776b49SBarry Smith if (filter >= 0 || scale) { 79732d776b49SBarry Smith /* take absolute value of each entry */ 797472833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 797572833a62Smarkadams4 MatInfo info; 797672833a62Smarkadams4 PetscScalar *avals; 79776497c311SBarry Smith 797872833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 797972833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 798072833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 798172833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 798272833a62Smarkadams4 } 798372833a62Smarkadams4 } 79842d776b49SBarry Smith } 798572833a62Smarkadams4 if (symmetrize) { 7986b94d7dedSBarry Smith PetscBool isset, issym; 79876497c311SBarry Smith 7988b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 7989b94d7dedSBarry Smith if (!isset || !issym) { 799072833a62Smarkadams4 Mat matTrans; 79916497c311SBarry Smith 799272833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 79931fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 799472833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 799572833a62Smarkadams4 } 799672833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 79972d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 799872833a62Smarkadams4 if (scale) { 799972833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 800072833a62Smarkadams4 Vec diag; 80016497c311SBarry Smith 800272833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 800372833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 800472833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 800572833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 800672833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 800772833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 800872833a62Smarkadams4 } 800972833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80102d776b49SBarry Smith if (filter >= 0) { 80112ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80122ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80132d776b49SBarry Smith } 801472833a62Smarkadams4 *a_Gmat = Gmat; 80153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 801672833a62Smarkadams4 } 801772833a62Smarkadams4 801803db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype) 801903db1824SAlex Lindsay { 802003db1824SAlex Lindsay Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 802103db1824SAlex Lindsay PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST; 802203db1824SAlex Lindsay 802303db1824SAlex Lindsay PetscFunctionBegin; 802403db1824SAlex Lindsay if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD)); 802503db1824SAlex Lindsay if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO)); 802603db1824SAlex Lindsay *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST; 802703db1824SAlex Lindsay PetscFunctionReturn(PETSC_SUCCESS); 802803db1824SAlex Lindsay } 802903db1824SAlex Lindsay 803072833a62Smarkadams4 /* 803198921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 803298921bdaSJacob Faibussowitsch */ 803398921bdaSJacob Faibussowitsch 803498921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80359566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80369566063dSJacob Faibussowitsch #undef PetscCall 80379371c9d4SSatish Balay #define PetscCall(...) \ 80389371c9d4SSatish Balay do { \ 80395f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804098921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 804198921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 804298921bdaSJacob Faibussowitsch return; \ 804398921bdaSJacob Faibussowitsch } \ 804498921bdaSJacob Faibussowitsch } while (0) 804598921bdaSJacob Faibussowitsch 804698921bdaSJacob Faibussowitsch #undef SETERRQ 80479371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80489371c9d4SSatish Balay do { \ 804998921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805098921bdaSJacob Faibussowitsch return; \ 805198921bdaSJacob Faibussowitsch } while (0) 805298921bdaSJacob Faibussowitsch 805398921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 805498921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 805598921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 805698921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 805798921bdaSJacob Faibussowitsch #else 805898921bdaSJacob Faibussowitsch #endif 8059d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8060d71ae5a4SJacob Faibussowitsch { 806198921bdaSJacob Faibussowitsch Mat mat = *mmat; 806298921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 806398921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 806498921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 806598921bdaSJacob Faibussowitsch PetscScalar value; 806698921bdaSJacob Faibussowitsch 806798921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 806898921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80695f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807098921bdaSJacob Faibussowitsch { 807198921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 807298921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 807398921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 807498921bdaSJacob Faibussowitsch 807598921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 807698921bdaSJacob Faibussowitsch Mat A = aij->A; 807798921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 807898921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 807998921bdaSJacob Faibussowitsch MatScalar *aa; 8080f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 808198921bdaSJacob Faibussowitsch Mat B = aij->B; 808298921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 808398921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 808498921bdaSJacob Faibussowitsch MatScalar *ba; 808598921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 808698921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 808798921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 808898921bdaSJacob Faibussowitsch 808998921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809098921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 809198921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 809298921bdaSJacob Faibussowitsch 809398921bdaSJacob Faibussowitsch PetscFunctionBegin; 80949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 809698921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 809798921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 80986bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 809998921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810098921bdaSJacob Faibussowitsch row = im[i] - rstart; 810198921bdaSJacob Faibussowitsch lastcol1 = -1; 810298921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 810398921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 810498921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 810598921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 810698921bdaSJacob Faibussowitsch low1 = 0; 810798921bdaSJacob Faibussowitsch high1 = nrow1; 810898921bdaSJacob Faibussowitsch lastcol2 = -1; 810998921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811098921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 811198921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 811298921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 811398921bdaSJacob Faibussowitsch low2 = 0; 811498921bdaSJacob Faibussowitsch high2 = nrow2; 811598921bdaSJacob Faibussowitsch 811698921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 811798921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 811898921bdaSJacob Faibussowitsch else value = v[i + j * m]; 811998921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812098921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 812198921bdaSJacob Faibussowitsch col = in[j] - cstart; 812298921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 812398921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 812498921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 812563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 812698921bdaSJacob Faibussowitsch } else { 812798921bdaSJacob Faibussowitsch if (mat->was_assembled) { 812848a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 812998921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8130eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 813198921bdaSJacob Faibussowitsch col--; 813298921bdaSJacob Faibussowitsch #else 813398921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 813498921bdaSJacob Faibussowitsch #endif 8135f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8136eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 813798921bdaSJacob Faibussowitsch col = in[j]; 813898921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 813998921bdaSJacob Faibussowitsch B = aij->B; 814098921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81419371c9d4SSatish Balay bimax = b->imax; 81429371c9d4SSatish Balay bi = b->i; 81439371c9d4SSatish Balay bilen = b->ilen; 81449371c9d4SSatish Balay bj = b->j; 814598921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 814698921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 814798921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 814898921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814998921bdaSJacob Faibussowitsch low2 = 0; 815098921bdaSJacob Faibussowitsch high2 = nrow2; 815198921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 815298921bdaSJacob Faibussowitsch ba = b->a; 815398921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 815498921bdaSJacob Faibussowitsch } 815598921bdaSJacob Faibussowitsch } else col = in[j]; 815698921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 815798921bdaSJacob Faibussowitsch } 815898921bdaSJacob Faibussowitsch } 815998921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816098921bdaSJacob Faibussowitsch if (roworiented) { 81619566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816298921bdaSJacob Faibussowitsch } else { 81639566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816498921bdaSJacob Faibussowitsch } 816598921bdaSJacob Faibussowitsch } 816698921bdaSJacob Faibussowitsch } 81679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 816998921bdaSJacob Faibussowitsch } 817098921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 817198921bdaSJacob Faibussowitsch } 817272833a62Smarkadams4 817398921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 817498921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 817598921bdaSJacob Faibussowitsch * original definitions */ 81769566063dSJacob Faibussowitsch #undef PetscCall 817798921bdaSJacob Faibussowitsch #undef SETERRQ 8178