xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 799b351e7a3cac07b0185fc03c8dca1b36495923)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
87d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4179680b7ceSStefano Zampini           /* Not sure LogFlops will slow down the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612966bd95aSPierre Jolivet               PetscCheck(1 == ((Mat_SeqAIJ *)aij->B->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6139566063dSJacob Faibussowitsch               PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
6140587a0fcSBarry Smith             }
615c48de900SBarry Smith           } else col = in[j];
6168d76821aSHong Zhang           nonew = b->nonew;
617d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6181eb62cbbSBarry Smith         }
6191eb62cbbSBarry Smith       }
6205ef9f2a5SBarry Smith     } else {
62128b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62290f02eecSBarry Smith       if (!aij->donotstash) {
6235080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
624d36fbae8SSatish Balay         if (roworiented) {
6258e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
626d36fbae8SSatish Balay         } else {
6278e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6284b0e389bSBarry Smith         }
6291eb62cbbSBarry Smith       }
6308a729477SBarry Smith     }
63190f02eecSBarry Smith   }
6325519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6358a729477SBarry Smith }
6368a729477SBarry Smith 
6372b08fdbeSandi selinger /*
638904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6392b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
640904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6412b08fdbeSandi selinger */
642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
643d71ae5a4SJacob Faibussowitsch {
644904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
645904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6464cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
647904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
648904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
649904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
650904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
651904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6526dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
653904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
654904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
655904d1e70Sandi selinger 
656904d1e70Sandi selinger   PetscFunctionBegin;
657904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
658904d1e70Sandi selinger   for (j = 0; j < am; j++) {
659904d1e70Sandi selinger     dnz = onz = 0;
660904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6616dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
662904d1e70Sandi selinger       /* If column is in the diagonal */
663904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
664904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
665904d1e70Sandi selinger         dnz++;
666904d1e70Sandi selinger       } else { /* off-diagonal entries */
667904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
668904d1e70Sandi selinger         onz++;
669904d1e70Sandi selinger       }
670904d1e70Sandi selinger     }
671904d1e70Sandi selinger     ailen[j] = dnz;
672904d1e70Sandi selinger     bilen[j] = onz;
673904d1e70Sandi selinger   }
6743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
675904d1e70Sandi selinger }
676904d1e70Sandi selinger 
677904d1e70Sandi selinger /*
678904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
679904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6801de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6811de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6821de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
683904d1e70Sandi selinger */
684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
685d71ae5a4SJacob Faibussowitsch {
6863a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6873a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6884cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
689f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6903a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6923a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6933a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6943a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6956dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6961de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
697904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
698904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6993a063d27Sandi selinger 
7003a063d27Sandi selinger   PetscFunctionBegin;
7013a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7023a063d27Sandi selinger   for (j = 0; j < am; j++) {
703904d1e70Sandi selinger     dnz_row = onz_row = 0;
704904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
705904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
706e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
707e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
708ae8e66a0Sandi selinger       /* If column is in the diagonal */
7093a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
710904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
711904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
712904d1e70Sandi selinger         dnz_row++;
713ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
714904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
715904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
716904d1e70Sandi selinger         onz_row++;
7173a063d27Sandi selinger       }
7183a063d27Sandi selinger     }
719904d1e70Sandi selinger     ailen[j] = dnz_row;
720904d1e70Sandi selinger     bilen[j] = onz_row;
7213a063d27Sandi selinger   }
7223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7233a063d27Sandi selinger }
7243a063d27Sandi selinger 
725ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
726d71ae5a4SJacob Faibussowitsch {
727b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
728d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
729d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
730b49de8d1SLois Curfman McInnes 
7313a40ed3dSBarry Smith   PetscFunctionBegin;
732b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73585835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
736b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
737b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73854c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
73954c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
740b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
741b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7429566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
743fa852ad4SSatish Balay       } else {
74448a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
745aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
746eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
747fa46199cSSatish Balay         col--;
748b1fc9764SSatish Balay #else
749905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
750b1fc9764SSatish Balay #endif
751e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75248a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
753b49de8d1SLois Curfman McInnes       }
754b49de8d1SLois Curfman McInnes     }
755b49de8d1SLois Curfman McInnes   }
7563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
757b49de8d1SLois Curfman McInnes }
758bc5ccf88SSatish Balay 
759ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
760d71ae5a4SJacob Faibussowitsch {
761bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
762b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
763bc5ccf88SSatish Balay 
764bc5ccf88SSatish Balay   PetscFunctionBegin;
7653ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
766bc5ccf88SSatish Balay 
7679566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7689566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
769*799b351eSPierre Jolivet   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771bc5ccf88SSatish Balay }
772bc5ccf88SSatish Balay 
773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
774d71ae5a4SJacob Faibussowitsch {
775bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
776b1d57f15SBarry Smith   PetscMPIInt  n;
777b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
778e44c0bd4SBarry Smith   PetscInt    *row, *col;
779c0edf612SJunchao Zhang   PetscBool    all_assembled;
78087828ca2SBarry Smith   PetscScalar *val;
781bc5ccf88SSatish Balay 
78291c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7836e111a19SKarl Rupp 
784bc5ccf88SSatish Balay   PetscFunctionBegin;
7854cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
786a2d1c673SSatish Balay     while (1) {
7879566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
788a2d1c673SSatish Balay       if (!flg) break;
789a2d1c673SSatish Balay 
790bc5ccf88SSatish Balay       for (i = 0; i < n;) {
791bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7922205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7932205254eSKarl Rupp           if (row[j] != rstart) break;
7942205254eSKarl Rupp         }
795bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
796bc5ccf88SSatish Balay         else ncols = n - i;
797bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7989566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
799bc5ccf88SSatish Balay         i = j;
800bc5ccf88SSatish Balay       }
801bc5ccf88SSatish Balay     }
8029566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
803bc5ccf88SSatish Balay   }
8048c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
805c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8069ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8079ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8089566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8109ecce9b1SRichard Tran Mills   }
811e2cf4d64SStefano Zampini #endif
8129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
814bc5ccf88SSatish Balay 
815b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
816071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
817bc5ccf88SSatish Balay   /*
818bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
819b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
820bc5ccf88SSatish Balay   */
821bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8225440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
823c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
824eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
825ad59fb31SSatish Balay     }
826ad59fb31SSatish Balay   }
82748a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8298c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
830c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
831e2cf4d64SStefano Zampini #endif
8329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
834bc5ccf88SSatish Balay 
8359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8362205254eSKarl Rupp 
837f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
838a30b2313SHong Zhang 
8399566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
840e56f5c9eSBarry Smith 
8414f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
842f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
843e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
844462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
845e56f5c9eSBarry Smith   }
8468c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
847c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
848e2cf4d64SStefano Zampini #endif
8493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
850bc5ccf88SSatish Balay }
851bc5ccf88SSatish Balay 
852ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
853d71ae5a4SJacob Faibussowitsch {
85444a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8553a40ed3dSBarry Smith 
8563a40ed3dSBarry Smith   PetscFunctionBegin;
8579566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8601eb62cbbSBarry Smith }
8611eb62cbbSBarry Smith 
862ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
863d71ae5a4SJacob Faibussowitsch {
8641b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8651b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8666e520ac8SStefano Zampini   PetscInt    r, len;
8679939a2d1SBarry Smith   PetscBool   cong;
8681eb62cbbSBarry Smith 
8693a40ed3dSBarry Smith   PetscFunctionBegin;
8706e520ac8SStefano Zampini   /* get locally owned rows */
8719566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8729566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
873dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87497b48c8fSBarry Smith   if (x && b) {
8751b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8761b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8771b1dd7adSMatthew G. Knepley 
87828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8799566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8811b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8829566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88497b48c8fSBarry Smith   }
885a92ad425SStefano Zampini 
886a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8879566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
889a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
890a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
892a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
893a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
894a92ad425SStefano Zampini 
895a92ad425SStefano Zampini     nnwA = aijA->nonew;
896a92ad425SStefano Zampini     nnwB = aijB->nonew;
897a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
898a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
899a92ad425SStefano Zampini     if (!nnzA) {
9009566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
901a92ad425SStefano Zampini       aijA->nonew = 0;
902a92ad425SStefano Zampini     }
903a92ad425SStefano Zampini     if (!nnzB) {
9049566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
905a92ad425SStefano Zampini       aijB->nonew = 0;
906a92ad425SStefano Zampini     }
907a92ad425SStefano Zampini     /* Must zero here before the next loop */
9089566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9101b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9111b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
912a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9139566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
914e2d53e46SBarry Smith     }
915a92ad425SStefano Zampini     aijA->nonew = nnwA;
916a92ad425SStefano Zampini     aijB->nonew = nnwB;
9176eb55b6aSBarry Smith   } else {
9189566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9206eb55b6aSBarry Smith   }
9219566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9244f9cfa9eSBarry Smith 
9259939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
926f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9279939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
928462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9299939a2d1SBarry Smith   }
9303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9311eb62cbbSBarry Smith }
9321eb62cbbSBarry Smith 
933ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
934d71ae5a4SJacob Faibussowitsch {
9359c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9366497c311SBarry Smith   PetscInt           n = A->rmap->n;
937131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93854bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
939131c27b5Sprj-   PetscMPIInt        p = 0;
94054bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94154bd4135SMatthew G. Knepley   PetscSF            sf;
9429c7c4993SBarry Smith   const PetscScalar *xx;
943fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
944564f14d6SBarry Smith   Vec                xmask, lmask;
945564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
946564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
947564f14d6SBarry Smith   PetscScalar       *aa;
9489c7c4993SBarry Smith 
9499c7c4993SBarry Smith   PetscFunctionBegin;
95054bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95254bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95454bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95554bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
956aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9575ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9589566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9595ba17502SJed Brown     }
96054bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96154bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9629c7c4993SBarry Smith   }
9639566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96554bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9669566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
96954bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9709371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9719371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
972564f14d6SBarry Smith   /* zero diagonal part of matrix */
9739566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9744cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9759566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9769566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97854bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9799566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
983a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
984a92ad425SStefano Zampini     PetscBool cong;
985a92ad425SStefano Zampini 
9869566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98728b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9889566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
992377aa5a1SBarry Smith   }
9939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9944cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
996564f14d6SBarry Smith   ii = aij->i;
9978e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
998564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
999564f14d6SBarry Smith   if (aij->compressedrow.use) {
1000564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1001564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1002564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1003564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1004564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1005564f14d6SBarry Smith       aj = aij->j + ii[i];
1006fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1007564f14d6SBarry Smith 
1008564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100925266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1010377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1011564f14d6SBarry Smith           *aa = 0.0;
1012564f14d6SBarry Smith         }
1013564f14d6SBarry Smith         aa++;
1014564f14d6SBarry Smith         aj++;
1015564f14d6SBarry Smith       }
1016564f14d6SBarry Smith       ridx++;
1017564f14d6SBarry Smith     }
1018564f14d6SBarry Smith   } else { /* do not use compressed row format */
1019564f14d6SBarry Smith     m = l->B->rmap->n;
1020564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1021564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1022564f14d6SBarry Smith       aj = aij->j + ii[i];
1023fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1024564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102525266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1026377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1027564f14d6SBarry Smith           *aa = 0.0;
1028564f14d6SBarry Smith         }
1029564f14d6SBarry Smith         aa++;
1030564f14d6SBarry Smith         aj++;
1031564f14d6SBarry Smith       }
1032564f14d6SBarry Smith     }
1033564f14d6SBarry Smith   }
1034a92ad425SStefano Zampini   if (x && b) {
10359566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1037377aa5a1SBarry Smith   }
10389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10419566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10424f9cfa9eSBarry Smith 
10434f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1044f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10454f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1046462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10474f9cfa9eSBarry Smith   }
10483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10499c7c4993SBarry Smith }
10509c7c4993SBarry Smith 
1051ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1052d71ae5a4SJacob Faibussowitsch {
1053416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1054b1d57f15SBarry Smith   PetscInt    nt;
105519b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1056416022c9SBarry Smith 
10573a40ed3dSBarry Smith   PetscFunctionBegin;
10589566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
105908401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10609566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1061296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1063296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10651eb62cbbSBarry Smith }
10661eb62cbbSBarry Smith 
1067ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1068d71ae5a4SJacob Faibussowitsch {
1069bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1070bd0c2dcbSBarry Smith 
1071bd0c2dcbSBarry Smith   PetscFunctionBegin;
10729566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1074bd0c2dcbSBarry Smith }
1075bd0c2dcbSBarry Smith 
1076ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1077d71ae5a4SJacob Faibussowitsch {
1078416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
107901ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10803a40ed3dSBarry Smith 
10813a40ed3dSBarry Smith   PetscFunctionBegin;
10829566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10839566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10849566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10859566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087da3a660dSBarry Smith }
1088da3a660dSBarry Smith 
1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1090d71ae5a4SJacob Faibussowitsch {
1091416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1092da3a660dSBarry Smith 
10933a40ed3dSBarry Smith   PetscFunctionBegin;
1094da3a660dSBarry Smith   /* do nondiagonal part */
10959566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1096da3a660dSBarry Smith   /* do local part */
10979566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10989613dc34SJunchao Zhang   /* add partial results together */
10999566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1102da3a660dSBarry Smith }
1103da3a660dSBarry Smith 
1104ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1105d71ae5a4SJacob Faibussowitsch {
11064f423910Svictorle   MPI_Comm    comm;
1107ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1108ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1109cd0d46ebSvictorle   IS          Me, Notme;
1110b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111154d735aeSStefano Zampini   PetscBool   lf;
1112b1d57f15SBarry Smith   PetscMPIInt size;
1113cd0d46ebSvictorle 
1114cd0d46ebSvictorle   PetscFunctionBegin;
111542e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
11175440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11183ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11199566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11213ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112242e5f5b4Svictorle 
11237dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11249566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11259566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1127cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1128cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11299566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11319566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113266501d38Svictorle   Aoff = Aoffs[0];
11339566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113466501d38Svictorle   Boff = Boffs[0];
11359566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11369566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11409566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1142cd0d46ebSvictorle }
1143cd0d46ebSvictorle 
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1147da3a660dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
1149da3a660dSBarry Smith   /* do nondiagonal part */
11509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1151da3a660dSBarry Smith   /* do local part */
11529566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11539613dc34SJunchao Zhang   /* add partial results together */
11549566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1157da3a660dSBarry Smith }
1158da3a660dSBarry Smith 
11591eb62cbbSBarry Smith /*
11601eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11611eb62cbbSBarry Smith    diagonal block
11621eb62cbbSBarry Smith */
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1164d71ae5a4SJacob Faibussowitsch {
1165416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11663a40ed3dSBarry Smith 
11673a40ed3dSBarry Smith   PetscFunctionBegin;
116808401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1169aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11709566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11721eb62cbbSBarry Smith }
11731eb62cbbSBarry Smith 
1174ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1175d71ae5a4SJacob Faibussowitsch {
1176052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11773a40ed3dSBarry Smith 
11783a40ed3dSBarry Smith   PetscFunctionBegin;
11799566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1182052efed2SBarry Smith }
1183052efed2SBarry Smith 
1184ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1185d71ae5a4SJacob Faibussowitsch {
11868e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11878e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11893ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11902e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119117a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119217a3732bSBarry Smith   PetscInt64         nz, hnz;
11933ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11943ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11953ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119617a3732bSBarry Smith   PetscMPIInt        rank;
11978e2fed03SBarry Smith 
11988e2fed03SBarry Smith   PetscFunctionBegin;
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12003ea6fe3dSLisandro Dalcin 
12013ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12023ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12033ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12043ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12053ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12068e2fed03SBarry Smith   nz = A->nz + B->nz;
12073ea6fe3dSLisandro Dalcin 
12083ea6fe3dSLisandro Dalcin   /* write matrix header */
12090700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12109371c9d4SSatish Balay   header[1] = M;
12119371c9d4SSatish Balay   header[2] = N;
121217a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121317a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1214835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12168e2fed03SBarry Smith 
12173ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12193ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12228e2fed03SBarry Smith 
12233ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12283ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12328e2fed03SBarry Smith   }
123317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12349566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12359566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12368e2fed03SBarry Smith 
12373ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12413ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12423ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12433ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12442e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12458e2fed03SBarry Smith     }
12469371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12479371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12488e2fed03SBarry Smith   }
12499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125117a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12529566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12539566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12548e2fed03SBarry Smith 
12553ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12569566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12588e2fed03SBarry Smith }
12598e2fed03SBarry Smith 
12609804daf3SBarry Smith #include <petscdraw.h>
1261ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1262d71ae5a4SJacob Faibussowitsch {
126344a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126432dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
12659f196a02SMartin Diehl   PetscBool         isdraw, isascii, isbinary;
1266b0a32e0cSBarry Smith   PetscViewer       sviewer;
1267f3ef73ceSBarry Smith   PetscViewerFormat format;
1268416022c9SBarry Smith 
12693a40ed3dSBarry Smith   PetscFunctionBegin;
12709566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12719f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
12739f196a02SMartin Diehl   if (isascii) {
12749566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1275ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12761690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12779566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1279835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1280ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1281ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1282ef5fdb51SBarry Smith         navg += nz[i];
1283ef5fdb51SBarry Smith       }
12849566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1285ef5fdb51SBarry Smith       navg = navg / size;
12869566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12873ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1288ef5fdb51SBarry Smith     }
12899566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1290456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12914e220ebcSLois Curfman McInnes       MatInfo   info;
12926335e310SSatish Balay       PetscInt *inodes = NULL;
1293923f20ffSKris Buschelman 
12949566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12959566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12969566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12979566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1298923f20ffSKris Buschelman       if (!inodes) {
12999371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1300835f2295SStefano Zampini                                                      info.memory));
13016831982aSBarry Smith       } else {
1302835f2295SStefano Zampini         PetscCall(
1303835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13046831982aSBarry Smith       }
13059566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13079566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13129566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13133ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1314fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1315923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13169566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1317923f20ffSKris Buschelman       if (inodes) {
13189566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1319d38fa0fbSBarry Smith       } else {
13209566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1321d38fa0fbSBarry Smith       }
13223ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13234aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13243ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132508480c60SBarry Smith     }
13268e2fed03SBarry Smith   } else if (isbinary) {
13278e2fed03SBarry Smith     if (size == 1) {
13289566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13299566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13308e2fed03SBarry Smith     } else {
13319566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13328e2fed03SBarry Smith     }
13333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13349f196a02SMartin Diehl   } else if (isascii && size == 1) {
13359566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13369566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13373ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13380f5bd95cSBarry Smith   } else if (isdraw) {
1339b0a32e0cSBarry Smith     PetscDraw draw;
1340ace3abfcSBarry Smith     PetscBool isnull;
13419566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13429566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13433ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134419bcc07fSBarry Smith   }
134519bcc07fSBarry Smith 
134671e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134771e56450SStefano Zampini     Mat A = NULL, Av;
134871e56450SStefano Zampini     IS  isrow, iscol;
13492ee70a88SLois Curfman McInnes 
13509566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13529566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13539566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135471e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135571e56450SStefano Zampini     /*
135671e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135771e56450SStefano Zampini     IS  isrow,iscol;
135871e56450SStefano Zampini 
13599566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13619566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1362dd400576SPatrick Sanan     if (rank == 0) {
13639566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136471e56450SStefano Zampini        A    = AA[0];
136571e56450SStefano Zampini        Av   = AA[0];
136695373324SBarry Smith     }
13679566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136871e56450SStefano Zampini */
13699566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137155843e3eSBarry Smith     /*
137255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1373b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137455843e3eSBarry Smith     */
13759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1376dd400576SPatrick Sanan     if (rank == 0) {
137748a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13789566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137995373324SBarry Smith     }
13809566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13819566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138295373324SBarry Smith   }
13833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13841eb62cbbSBarry Smith }
13851eb62cbbSBarry Smith 
1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1387d71ae5a4SJacob Faibussowitsch {
13889f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1389416022c9SBarry Smith 
13903a40ed3dSBarry Smith   PetscFunctionBegin;
13919f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
13959f196a02SMartin Diehl   if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1397416022c9SBarry Smith }
1398416022c9SBarry Smith 
1399ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1400d71ae5a4SJacob Faibussowitsch {
140144a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1402f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1403ace3abfcSBarry Smith   PetscBool   hasop;
14048a729477SBarry Smith 
14053a40ed3dSBarry Smith   PetscFunctionBegin;
1406a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14079566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14083ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1409a2b30743SBarry Smith   }
1410a2b30743SBarry Smith 
141148a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14124e980039SJed Brown 
1413c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1414da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14159566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14162798e883SHong Zhang       its--;
1417da3a660dSBarry Smith     }
14182798e883SHong Zhang 
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14262798e883SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1442c14dc6b6SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
14463a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1447da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14489566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14492798e883SHong Zhang       its--;
1450da3a660dSBarry Smith     }
14512798e883SHong Zhang     while (its--) {
14529566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14542798e883SHong Zhang 
1455c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14569566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14579566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14582798e883SHong Zhang 
1459c14dc6b6SHong Zhang       /* local sweep */
14609566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14612798e883SHong Zhang     }
1462a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1463a7420bb7SBarry Smith     Vec xx1;
1464a7420bb7SBarry Smith 
14659566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14669566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1467a7420bb7SBarry Smith 
14689566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1470a7420bb7SBarry Smith     if (!mat->diag) {
14719566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14729566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1473a7420bb7SBarry Smith     }
14749566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1475bd0c2dcbSBarry Smith     if (hasop) {
14769566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1477bd0c2dcbSBarry Smith     } else {
14789566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1479bd0c2dcbSBarry Smith     }
14809566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1481887ee2caSBarry Smith 
14829566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1483a7420bb7SBarry Smith 
1484a7420bb7SBarry Smith     /* local sweep */
14859566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14869566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1488ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1489c14dc6b6SHong Zhang 
14909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1491a0808db4SHong Zhang 
14927b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14948a729477SBarry Smith }
1495a66be287SLois Curfman McInnes 
1496ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1497d71ae5a4SJacob Faibussowitsch {
149872e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149972e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150072e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150172e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150272e6a0cfSJed Brown   PetscSF         rowsf, sf;
15030298fd71SBarry Smith   IS              parcolp = NULL;
150472e6a0cfSJed Brown   PetscBool       done;
150542e855d1Svictor 
150642e855d1Svictor   PetscFunctionBegin;
15079566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15089566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151172e6a0cfSJed Brown 
151272e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151672e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151972e6a0cfSJed Brown 
152072e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152472e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152872e6a0cfSJed Brown 
15299566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15319566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153272e6a0cfSJed Brown 
153372e6a0cfSJed Brown   /* Find out where my gcols should go */
15349566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15369566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154272e6a0cfSJed Brown 
15439566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15449566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1547131c27b5Sprj-     PetscInt    row = rdest[i];
1548131c27b5Sprj-     PetscMPIInt rowner;
15499566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155072e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1551131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1552131c27b5Sprj-       PetscMPIInt cowner;
15539566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155472e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155572e6a0cfSJed Brown       else onnz[i]++;
155672e6a0cfSJed Brown     }
155772e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1558131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1559131c27b5Sprj-       PetscMPIInt cowner;
15609566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156172e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156272e6a0cfSJed Brown       else onnz[i]++;
156372e6a0cfSJed Brown     }
156472e6a0cfSJed Brown   }
15659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157072e6a0cfSJed Brown 
15719566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157472e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157572e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1576970468b0SJed Brown     PetscInt  j0, rowlen;
157772e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1578970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1579970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15809566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1581970468b0SJed Brown     }
158272e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1583970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1584970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15859566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1586970468b0SJed Brown     }
158772e6a0cfSJed Brown   }
15889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15949566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15979566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159872e6a0cfSJed Brown   *B = Aperm;
15993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160042e855d1Svictor }
160142e855d1Svictor 
1602ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1603d71ae5a4SJacob Faibussowitsch {
1604c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1605c5e4d11fSDmitry Karpeev 
1606c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16079566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1608c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1610c5e4d11fSDmitry Karpeev }
1611c5e4d11fSDmitry Karpeev 
1612ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1613d71ae5a4SJacob Faibussowitsch {
1614a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1615a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16163966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1617a66be287SLois Curfman McInnes 
16183a40ed3dSBarry Smith   PetscFunctionBegin;
16194e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16212205254eSKarl Rupp 
16229371c9d4SSatish Balay   isend[0] = info->nz_used;
16239371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16249371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16259371c9d4SSatish Balay   isend[3] = info->memory;
16269371c9d4SSatish Balay   isend[4] = info->mallocs;
16272205254eSKarl Rupp 
16289566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16292205254eSKarl Rupp 
16309371c9d4SSatish Balay   isend[0] += info->nz_used;
16319371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16329371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16339371c9d4SSatish Balay   isend[3] += info->memory;
16349371c9d4SSatish Balay   isend[4] += info->mallocs;
1635a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16364e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16394e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1641a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1642462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16432205254eSKarl Rupp 
16444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1649a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1650462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16512205254eSKarl Rupp 
16524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1657a66be287SLois Curfman McInnes   }
16584e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16594e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16604e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1662a66be287SLois Curfman McInnes }
1663a66be287SLois Curfman McInnes 
1664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1665d71ae5a4SJacob Faibussowitsch {
1666c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1667c74985f6SBarry Smith 
16683a40ed3dSBarry Smith   PetscFunctionBegin;
166912c028f9SKris Buschelman   switch (op) {
1670512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1673a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16750ad02fcaSStefano Zampini   case MAT_USE_INODES:
167612c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16771a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1678fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168112c028f9SKris Buschelman     break;
168212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168343674050SBarry Smith     MatCheckPreallocated(A, 1);
16844e0d8c25SBarry Smith     a->roworiented = flg;
16852205254eSKarl Rupp 
16869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168812c028f9SKris Buschelman     break;
1689d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1690d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1691d71ae5a4SJacob Faibussowitsch     break;
1692c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1693ffa07934SHong Zhang   case MAT_SPD:
169477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1696bf108f30SBarry Smith   case MAT_HERMITIAN:
1697bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1698b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1700b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17019725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170277e54ba9SKris Buschelman     break;
1703d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1704d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1705d71ae5a4SJacob Faibussowitsch     break;
1706d71ae5a4SJacob Faibussowitsch   default:
1707888c827cSStefano Zampini     break;
17083a40ed3dSBarry Smith   }
17093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1710c74985f6SBarry Smith }
1711c74985f6SBarry Smith 
1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1713d71ae5a4SJacob Faibussowitsch {
1714154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1716d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1717d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1718b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
171939e00950SLois Curfman McInnes 
17203a40ed3dSBarry Smith   PetscFunctionBegin;
172128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17227a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17237a0afa10SBarry Smith 
172470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17257a0afa10SBarry Smith     /*
17267a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17277a0afa10SBarry Smith     */
17287a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1729b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1730d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17317a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17322205254eSKarl Rupp       if (max < tmp) max = tmp;
17337a0afa10SBarry Smith     }
17349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17357a0afa10SBarry Smith   }
17367a0afa10SBarry Smith 
1737aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1738abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
173939e00950SLois Curfman McInnes 
17409371c9d4SSatish Balay   pvA = &vworkA;
17419371c9d4SSatish Balay   pcA = &cworkA;
17429371c9d4SSatish Balay   pvB = &vworkB;
17439371c9d4SSatish Balay   pcB = &cworkB;
17449371c9d4SSatish Balay   if (!v) {
17459371c9d4SSatish Balay     pvA = NULL;
17469371c9d4SSatish Balay     pvB = NULL;
17479371c9d4SSatish Balay   }
17489371c9d4SSatish Balay   if (!idx) {
17499371c9d4SSatish Balay     pcA = NULL;
17509371c9d4SSatish Balay     if (!v) pcB = NULL;
17519371c9d4SSatish Balay   }
17529566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17539566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1754154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1755154123eaSLois Curfman McInnes 
175670f0671dSBarry Smith   cmap = mat->garray;
1757154123eaSLois Curfman McInnes   if (v || idx) {
1758154123eaSLois Curfman McInnes     if (nztot) {
1759154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1760b1d57f15SBarry Smith       PetscInt imark = -1;
1761154123eaSLois Curfman McInnes       if (v) {
176270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1765154123eaSLois Curfman McInnes           else break;
1766154123eaSLois Curfman McInnes         }
1767154123eaSLois Curfman McInnes         imark = i;
176870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
176970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1770154123eaSLois Curfman McInnes       }
1771154123eaSLois Curfman McInnes       if (idx) {
177270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177370f0671dSBarry Smith         if (imark > -1) {
1774ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177570f0671dSBarry Smith         } else {
1776154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1778154123eaSLois Curfman McInnes             else break;
1779154123eaSLois Curfman McInnes           }
1780154123eaSLois Curfman McInnes           imark = i;
178170f0671dSBarry Smith         }
178270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178439e00950SLois Curfman McInnes       }
17853f97c4b0SBarry Smith     } else {
1786f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1787f4259b30SLisandro Dalcin       if (v) *v = NULL;
17881ca473b0SSatish Balay     }
1789154123eaSLois Curfman McInnes   }
179039e00950SLois Curfman McInnes   *nz = nztot;
17919566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17929566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1797d71ae5a4SJacob Faibussowitsch {
17987a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17993a40ed3dSBarry Smith 
18003a40ed3dSBarry Smith   PetscFunctionBegin;
180128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18027a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180439e00950SLois Curfman McInnes }
180539e00950SLois Curfman McInnes 
1806ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1807d71ae5a4SJacob Faibussowitsch {
1808855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1809ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
181075dbe01dSPierre Jolivet   PetscInt         i, j;
1811329f5518SBarry Smith   PetscReal        sum = 0.0;
1812fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181304ca555eSLois Curfman McInnes 
18143a40ed3dSBarry Smith   PetscFunctionBegin;
181517699dbbSLois Curfman McInnes   if (aij->size == 1) {
18169566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181737fa93a5SLois Curfman McInnes   } else {
18189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1821fff043a9SJunchao Zhang       v = amata;
182204ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18239371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18249371c9d4SSatish Balay         v++;
182504ca555eSLois Curfman McInnes       }
1826fff043a9SJunchao Zhang       v = bmata;
182704ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18289371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18299371c9d4SSatish Balay         v++;
183004ca555eSLois Curfman McInnes       }
1831462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18328f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18339566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18343a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
18358ba8550cSPierre Jolivet       Vec          col, bcol;
183675dbe01dSPierre Jolivet       PetscScalar *array;
1837b1d57f15SBarry Smith       PetscInt    *jj, *garray = aij->garray;
183875dbe01dSPierre Jolivet 
183975dbe01dSPierre Jolivet       PetscCall(MatCreateVecs(mat, &col, NULL));
184075dbe01dSPierre Jolivet       PetscCall(VecSet(col, 0.0));
184175dbe01dSPierre Jolivet       PetscCall(VecGetArrayWrite(col, &array));
18429371c9d4SSatish Balay       v  = amata;
18439371c9d4SSatish Balay       jj = amat->j;
184475dbe01dSPierre Jolivet       for (j = 0; j < amat->nz; j++) array[*jj++] += PetscAbsScalar(*v++);
184575dbe01dSPierre Jolivet       PetscCall(VecRestoreArrayWrite(col, &array));
18468ba8550cSPierre Jolivet       PetscCall(MatCreateVecs(aij->B, &bcol, NULL));
18478ba8550cSPierre Jolivet       PetscCall(VecSet(bcol, 0.0));
18488ba8550cSPierre Jolivet       PetscCall(VecGetArrayWrite(bcol, &array));
18499371c9d4SSatish Balay       v  = bmata;
18509371c9d4SSatish Balay       jj = bmat->j;
18518ba8550cSPierre Jolivet       for (j = 0; j < bmat->nz; j++) array[*jj++] += PetscAbsScalar(*v++);
18528ba8550cSPierre Jolivet       PetscCall(VecSetValues(col, aij->B->cmap->n, garray, array, ADD_VALUES));
18538ba8550cSPierre Jolivet       PetscCall(VecRestoreArrayWrite(bcol, &array));
18548ba8550cSPierre Jolivet       PetscCall(VecDestroy(&bcol));
185575dbe01dSPierre Jolivet       PetscCall(VecAssemblyBegin(col));
185675dbe01dSPierre Jolivet       PetscCall(VecAssemblyEnd(col));
185775dbe01dSPierre Jolivet       PetscCall(VecNorm(col, NORM_INFINITY, norm));
185875dbe01dSPierre Jolivet       PetscCall(VecDestroy(&col));
18593a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1860329f5518SBarry Smith       PetscReal ntemp = 0.0;
1861d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18628e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186304ca555eSLois Curfman McInnes         sum = 0.0;
186404ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18659371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18669371c9d4SSatish Balay           v++;
186704ca555eSLois Curfman McInnes         }
18688e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186904ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18709371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18719371c9d4SSatish Balay           v++;
187204ca555eSLois Curfman McInnes         }
1873515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187404ca555eSLois Curfman McInnes       }
1875462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18769566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1877ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18799566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
188037fa93a5SLois Curfman McInnes   }
18813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1882855ac2c5SLois Curfman McInnes }
1883855ac2c5SLois Curfman McInnes 
1884ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1885d71ae5a4SJacob Faibussowitsch {
1886a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1887a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1888071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1889071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1890a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1891ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1892b7c46309SBarry Smith 
18933a40ed3dSBarry Smith   PetscFunctionBegin;
18947fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18959371c9d4SSatish Balay   ma = A->rmap->n;
18969371c9d4SSatish Balay   na = A->cmap->n;
18979371c9d4SSatish Balay   mb = a->B->rmap->n;
18989371c9d4SSatish Balay   nb = a->B->cmap->n;
18999371c9d4SSatish Balay   ai = Aloc->i;
19009371c9d4SSatish Balay   aj = Aloc->j;
19019371c9d4SSatish Balay   bi = Bloc->i;
19029371c9d4SSatish Balay   bj = Bloc->j;
1903fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190480bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190580bcc5a1SJed Brown     PetscSFNode         *oloc;
1906713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190780bcc5a1SJed Brown 
19089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190980bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19109566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1911cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191280bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19139566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191480bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191580bcc5a1SJed Brown     /* map those to global */
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19189566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19199566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192157168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19229566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1923d4bb536fSBarry Smith 
19249566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
192658b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs));
19279566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19289566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19299566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1930fc4dec0aSBarry Smith   } else {
1931fc4dec0aSBarry Smith     B = *matout;
19329566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1933fc4dec0aSBarry Smith   }
1934b7c46309SBarry Smith 
1935f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1936a8661f62Sandi selinger   A_diag      = a->A;
1937a8661f62Sandi selinger   B_diag      = &b->A;
1938a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1939a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1940a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1941a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1942f79cb1a0Sandi selinger 
1943f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1944ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1945f79cb1a0Sandi selinger 
19464cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1947a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19487fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19499566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1950f79cb1a0Sandi selinger 
1951b7c46309SBarry Smith   /* copy over the B part */
19529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19539566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1954ce496241SStefano Zampini   pbv = bv;
1955d0f46423SBarry Smith   row = A->rmap->rstart;
19562205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195761a2fbbaSHong Zhang   cols_tmp = cols;
1958da668accSHong Zhang   for (i = 0; i < mb; i++) {
1959da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19609566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19612205254eSKarl Rupp     row++;
1962720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1963720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1964b7c46309SBarry Smith   }
19659566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1967fc73b1b3SBarry Smith 
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1970cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19710de55854SLois Curfman McInnes     *matout = B;
19720de55854SLois Curfman McInnes   } else {
19739566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19740de55854SLois Curfman McInnes   }
19753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1976b7c46309SBarry Smith }
1977b7c46309SBarry Smith 
1978ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1979d71ae5a4SJacob Faibussowitsch {
19804b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19814b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1982b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1983a008b906SSatish Balay 
19843a40ed3dSBarry Smith   PetscFunctionBegin;
19859566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19864b967eb1SSatish Balay   if (rr) {
19879566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198808401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19894b967eb1SSatish Balay     /* Overlap communication with computation. */
19909566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1991a008b906SSatish Balay   }
19924b967eb1SSatish Balay   if (ll) {
19939566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199408401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1995dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19964b967eb1SSatish Balay   }
19974b967eb1SSatish Balay   /* scale  the diagonal block */
1998dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19994b967eb1SSatish Balay 
20004b967eb1SSatish Balay   if (rr) {
20014b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20029566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2003dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20044b967eb1SSatish Balay   }
20053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2006a008b906SSatish Balay }
2007a008b906SSatish Balay 
2008ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2009d71ae5a4SJacob Faibussowitsch {
2010bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20113a40ed3dSBarry Smith 
20123a40ed3dSBarry Smith   PetscFunctionBegin;
20139566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2015bb5a7306SBarry Smith }
2016bb5a7306SBarry Smith 
2017ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2018d71ae5a4SJacob Faibussowitsch {
2019d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2020d4bb536fSBarry Smith   Mat         a, b, c, d;
2021ace3abfcSBarry Smith   PetscBool   flg;
2022d4bb536fSBarry Smith 
20233a40ed3dSBarry Smith   PetscFunctionBegin;
20249371c9d4SSatish Balay   a = matA->A;
20259371c9d4SSatish Balay   b = matA->B;
20269371c9d4SSatish Balay   c = matB->A;
20279371c9d4SSatish Balay   d = matB->B;
2028d4bb536fSBarry Smith 
20299566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
203048a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20315440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2033d4bb536fSBarry Smith }
2034d4bb536fSBarry Smith 
2035ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2036d71ae5a4SJacob Faibussowitsch {
2037cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2038cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2039cb5b572fSBarry Smith 
2040cb5b572fSBarry Smith   PetscFunctionBegin;
204133f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204233f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2043cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2044cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2045cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2046cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2047cb5b572fSBarry Smith        then copying the submatrices */
20489566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2049cb5b572fSBarry Smith   } else {
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20519566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2052cb5b572fSBarry Smith   }
20539566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2055cb5b572fSBarry Smith }
2056cb5b572fSBarry Smith 
2057001ddc4fSHong Zhang /*
2058001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2059001ddc4fSHong Zhang    have different nonzero structure.
2060001ddc4fSHong Zhang */
2061d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2062d71ae5a4SJacob Faibussowitsch {
2063001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206495b7e79eSJed Brown 
206595b7e79eSJed Brown   PetscFunctionBegin;
206695b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206795b7e79eSJed Brown   for (i = 0; i < m; i++) {
20688e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2069001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2070001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207195b7e79eSJed Brown     nnz[i] = 0;
207295b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2073001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2074001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207595b7e79eSJed Brown       nnz[i]++;
207695b7e79eSJed Brown     }
207795b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207895b7e79eSJed Brown   }
20793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208095b7e79eSJed Brown }
208195b7e79eSJed Brown 
2082001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2084d71ae5a4SJacob Faibussowitsch {
2085001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2087001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2088001ddc4fSHong Zhang 
2089001ddc4fSHong Zhang   PetscFunctionBegin;
20909566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2092001ddc4fSHong Zhang }
2093001ddc4fSHong Zhang 
2094ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2095d71ae5a4SJacob Faibussowitsch {
2096ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2097ac90fabeSBarry Smith 
2098ac90fabeSBarry Smith   PetscFunctionBegin;
2099ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21019566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2102ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21039566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2104ac90fabeSBarry Smith   } else {
21059f5f6813SShri Abhyankar     Mat       B;
21069f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2107d9d719b4SStefano Zampini 
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21109566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21119566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21139566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21159566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21179566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21189566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21209566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2121ac90fabeSBarry Smith   }
21223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2123ac90fabeSBarry Smith }
2124ac90fabeSBarry Smith 
21252726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2126354c94deSBarry Smith 
2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2128d71ae5a4SJacob Faibussowitsch {
21295f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21305f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2131354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2132354c94deSBarry Smith 
21339566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21349566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21355f80ce2aSJacob Faibussowitsch   }
21363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2137354c94deSBarry Smith }
2138354c94deSBarry Smith 
2139ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2140d71ae5a4SJacob Faibussowitsch {
214199cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214299cafbc1SBarry Smith 
214399cafbc1SBarry Smith   PetscFunctionBegin;
21449566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21459566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214799cafbc1SBarry Smith }
214899cafbc1SBarry Smith 
2149ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2150d71ae5a4SJacob Faibussowitsch {
215199cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215299cafbc1SBarry Smith 
215399cafbc1SBarry Smith   PetscFunctionBegin;
21549566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21559566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215799cafbc1SBarry Smith }
215899cafbc1SBarry Smith 
2159ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2160d71ae5a4SJacob Faibussowitsch {
2161c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2162475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216362e5df07SMark Adams   PetscScalar       *vv;
2164475b8b61SHong Zhang   Vec                vB, vA;
216562e5df07SMark Adams   const PetscScalar *va, *vb;
2166c91732d9SHong Zhang 
2167c91732d9SHong Zhang   PetscFunctionBegin;
2168c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21699566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2170475b8b61SHong Zhang 
217162e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2172c91732d9SHong Zhang   if (idx) {
2173475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2174d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2175c91732d9SHong Zhang     }
2176c91732d9SHong Zhang   }
2177c91732d9SHong Zhang 
2178c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21809566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2181c91732d9SHong Zhang 
21829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21839566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2184475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2185c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2186475b8b61SHong Zhang       vv[i] = vb[i];
2187c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2188475b8b61SHong Zhang     } else {
2189475b8b61SHong Zhang       vv[i] = va[i];
21909371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2191c91732d9SHong Zhang     }
2192c91732d9SHong Zhang   }
219362e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219462e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21969566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21989566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2200c91732d9SHong Zhang }
2201c91732d9SHong Zhang 
2202eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2203eede4a3fSMark Adams {
2204eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2205eede4a3fSMark Adams   Vec         vB, vA;
2206eede4a3fSMark Adams 
2207eede4a3fSMark Adams   PetscFunctionBegin;
2208c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2209eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2210c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2211eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2212eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2213eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2214eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2215eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2216eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2217eede4a3fSMark Adams }
2218eede4a3fSMark Adams 
2219ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2220d71ae5a4SJacob Faibussowitsch {
2221f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2222f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2223f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2224f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2225f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2226f07e67edSHong Zhang   Vec                diagV, offdiagV;
2227ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2228ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2229f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2230f07e67edSHong Zhang   Mat                B = mat->B;
2231f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2232c87e5d42SMatthew Knepley 
2233c87e5d42SMatthew Knepley   PetscFunctionBegin;
2234f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2235f07e67edSHong Zhang   if (A->cmap->N == n) {
22369566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22379566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22389566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22399566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22409566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22413ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2242f07e67edSHong Zhang   } else if (n == 0) {
2243f07e67edSHong Zhang     if (m) {
22449566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22459371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22469371c9d4SSatish Balay         a[r] = 0.0;
22479371c9d4SSatish Balay         if (idx) idx[r] = -1;
22489371c9d4SSatish Balay       }
22499566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2250f07e67edSHong Zhang     }
22513ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2252f07e67edSHong Zhang   }
2253f07e67edSHong Zhang 
22549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22569566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22579566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2258f07e67edSHong Zhang 
2259f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22609566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2261ce496241SStefano Zampini   ba = bav;
2262f07e67edSHong Zhang   bi = b->i;
2263f07e67edSHong Zhang   bj = b->j;
22649566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2265f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2266f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2267f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22689371c9d4SSatish Balay       offdiagA[r]   = *ba;
22699371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2270f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2271f07e67edSHong Zhang       offdiagA[r] = 0.0;
2272f07e67edSHong Zhang 
2273f07e67edSHong Zhang       /* Find first hole in the cmap */
2274f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2275f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2276f07e67edSHong Zhang         if (col > j && j < cstart) {
2277f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2278f07e67edSHong Zhang           break;
2279f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2280f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2281f07e67edSHong Zhang           break;
2282f07e67edSHong Zhang         }
2283f07e67edSHong Zhang       }
22844e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2285f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2286f07e67edSHong Zhang         if (ncols == 0) {
2287f07e67edSHong Zhang           if (cstart) {
2288f07e67edSHong Zhang             offdiagIdx[r] = 0;
2289f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2290f07e67edSHong Zhang         } else { /* ncols > 0 */
2291f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2292f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2293f07e67edSHong Zhang         }
2294f07e67edSHong Zhang       }
2295f07e67edSHong Zhang     }
2296f07e67edSHong Zhang 
2297f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22989371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22999371c9d4SSatish Balay         offdiagA[r]   = *ba;
23009371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23019371c9d4SSatish Balay       }
23029371c9d4SSatish Balay       ba++;
23039371c9d4SSatish Balay       bj++;
2304f07e67edSHong Zhang     }
2305f07e67edSHong Zhang   }
2306f07e67edSHong Zhang 
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23089566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2309f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2310f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2311f07e67edSHong Zhang       a[r] = diagA[r];
2312f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2313f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2314f07e67edSHong Zhang       a[r] = diagA[r];
2315c87e5d42SMatthew Knepley       if (idx) {
2316f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2317f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2318f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2319f07e67edSHong Zhang       }
2320f07e67edSHong Zhang     } else {
2321f07e67edSHong Zhang       a[r] = offdiagA[r];
2322f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2323c87e5d42SMatthew Knepley     }
2324c87e5d42SMatthew Knepley   }
23259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23309566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23319566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2333c87e5d42SMatthew Knepley }
2334c87e5d42SMatthew Knepley 
2335ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2336d71ae5a4SJacob Faibussowitsch {
233703bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2338fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2339fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
234003bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234103bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234203bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2343ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2344ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2345fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2346fa213d2fSHong Zhang   Mat                B = mat->B;
2347fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234803bc72f1SMatthew Knepley 
234903bc72f1SMatthew Knepley   PetscFunctionBegin;
2350fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2351fa213d2fSHong Zhang   if (A->cmap->N == n) {
23529566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23539566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23549566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23559566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23573ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2358fa213d2fSHong Zhang   } else if (n == 0) {
2359fa213d2fSHong Zhang     if (m) {
23609566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23619371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23629371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23639371c9d4SSatish Balay         if (idx) idx[r] = -1;
23649371c9d4SSatish Balay       }
23659566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2366fa213d2fSHong Zhang     }
23673ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2368fa213d2fSHong Zhang   }
2369fa213d2fSHong Zhang 
23709566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23729566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23739566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2374fa213d2fSHong Zhang 
2375fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2377ce496241SStefano Zampini   ba = bav;
2378fa213d2fSHong Zhang   bi = b->i;
2379fa213d2fSHong Zhang   bj = b->j;
23809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2381fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2382fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2383fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23849371c9d4SSatish Balay       offdiagA[r]   = *ba;
23859371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2386fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2387fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2388fa213d2fSHong Zhang 
2389fa213d2fSHong Zhang       /* Find first hole in the cmap */
2390fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2391fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2392fa213d2fSHong Zhang         if (col > j && j < cstart) {
2393fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2394fa213d2fSHong Zhang           break;
2395fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2396fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2397fa213d2fSHong Zhang           break;
2398fa213d2fSHong Zhang         }
2399fa213d2fSHong Zhang       }
24004e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2401fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2402fa213d2fSHong Zhang         if (ncols == 0) {
2403fa213d2fSHong Zhang           if (cstart) {
2404fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2405fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2406fa213d2fSHong Zhang         } else { /* ncols > 0 */
2407fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2408fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2409fa213d2fSHong Zhang         }
2410fa213d2fSHong Zhang       }
2411fa213d2fSHong Zhang     }
2412fa213d2fSHong Zhang 
2413fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24149371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24159371c9d4SSatish Balay         offdiagA[r]   = *ba;
24169371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24179371c9d4SSatish Balay       }
24189371c9d4SSatish Balay       ba++;
24199371c9d4SSatish Balay       bj++;
2420fa213d2fSHong Zhang     }
2421fa213d2fSHong Zhang   }
2422fa213d2fSHong Zhang 
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24249566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2425fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2426fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242703bc72f1SMatthew Knepley       a[r] = diagA[r];
2428fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2429fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2430fa213d2fSHong Zhang       a[r] = diagA[r];
2431fa213d2fSHong Zhang       if (idx) {
2432fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243303bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2434fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2435fa213d2fSHong Zhang       }
243603bc72f1SMatthew Knepley     } else {
243703bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2438fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243903bc72f1SMatthew Knepley     }
244003bc72f1SMatthew Knepley   }
24419566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244903bc72f1SMatthew Knepley }
245003bc72f1SMatthew Knepley 
2451ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2452d71ae5a4SJacob Faibussowitsch {
2453c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24541a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24551a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2456c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2457c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2458c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2459ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2460ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24611a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24621a254869SHong Zhang   Mat                B = mat->B;
24631a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2464c87e5d42SMatthew Knepley 
2465c87e5d42SMatthew Knepley   PetscFunctionBegin;
24661a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24671a254869SHong Zhang   if (A->cmap->N == n) {
24689566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24699566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24709566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24719566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24729566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24733ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24741a254869SHong Zhang   } else if (n == 0) {
24751a254869SHong Zhang     if (m) {
24769566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24779371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24789371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24799371c9d4SSatish Balay         if (idx) idx[r] = -1;
24809371c9d4SSatish Balay       }
24819566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24821a254869SHong Zhang     }
24833ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24841a254869SHong Zhang   }
24851a254869SHong Zhang 
24869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24889566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24899566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24901a254869SHong Zhang 
24911a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2493ce496241SStefano Zampini   ba = bav;
24941a254869SHong Zhang   bi = b->i;
24951a254869SHong Zhang   bj = b->j;
24969566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24971a254869SHong Zhang   for (r = 0; r < m; r++) {
24981a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24991a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
25009371c9d4SSatish Balay       offdiagA[r]   = *ba;
25019371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25021a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25031a254869SHong Zhang       offdiagA[r] = 0.0;
25041a254869SHong Zhang 
25051a254869SHong Zhang       /* Find first hole in the cmap */
25061a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25071a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25081a254869SHong Zhang         if (col > j && j < cstart) {
25091a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25101a254869SHong Zhang           break;
25111a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25121a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25131a254869SHong Zhang           break;
25141a254869SHong Zhang         }
25151a254869SHong Zhang       }
25164e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25171a254869SHong Zhang         /* a hole is outside compressed Bcols */
25181a254869SHong Zhang         if (ncols == 0) {
25191a254869SHong Zhang           if (cstart) {
25201a254869SHong Zhang             offdiagIdx[r] = 0;
25211a254869SHong Zhang           } else offdiagIdx[r] = cend;
25221a254869SHong Zhang         } else { /* ncols > 0 */
25231a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25241a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25251a254869SHong Zhang         }
25261a254869SHong Zhang       }
25271a254869SHong Zhang     }
25281a254869SHong Zhang 
25291a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25309371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25319371c9d4SSatish Balay         offdiagA[r]   = *ba;
25329371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25339371c9d4SSatish Balay       }
25349371c9d4SSatish Balay       ba++;
25359371c9d4SSatish Balay       bj++;
25361a254869SHong Zhang     }
25371a254869SHong Zhang   }
25381a254869SHong Zhang 
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25409566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25411a254869SHong Zhang   for (r = 0; r < m; ++r) {
25421a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2543c87e5d42SMatthew Knepley       a[r] = diagA[r];
25441a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25451a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25461a254869SHong Zhang       a[r] = diagA[r];
25471a254869SHong Zhang       if (idx) {
25481a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2549c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25501a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25511a254869SHong Zhang       }
2552c87e5d42SMatthew Knepley     } else {
2553c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25541a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2555c87e5d42SMatthew Knepley     }
2556c87e5d42SMatthew Knepley   }
25579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25629566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2565c87e5d42SMatthew Knepley }
2566c87e5d42SMatthew Knepley 
2567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2568d71ae5a4SJacob Faibussowitsch {
2569f6d58c54SBarry Smith   Mat *dummy;
25705494a064SHong Zhang 
25715494a064SHong Zhang   PetscFunctionBegin;
25729566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2573f6d58c54SBarry Smith   *newmat = *dummy;
25749566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25765494a064SHong Zhang }
25775494a064SHong Zhang 
2578ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2579d71ae5a4SJacob Faibussowitsch {
2580bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2581bbead8a2SBarry Smith 
2582bbead8a2SBarry Smith   PetscFunctionBegin;
25839566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25847b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2586bbead8a2SBarry Smith }
2587bbead8a2SBarry Smith 
2588d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2589d71ae5a4SJacob Faibussowitsch {
259073a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259173a71a0fSBarry Smith 
259273a71a0fSBarry Smith   PetscFunctionBegin;
259308401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25949566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2595679944adSJunchao Zhang   if (x->assembled) {
25969566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2597679944adSJunchao Zhang   } else {
25989566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2599679944adSJunchao Zhang   }
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26019566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260373a71a0fSBarry Smith }
2604bbead8a2SBarry Smith 
2605ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2606d71ae5a4SJacob Faibussowitsch {
2607b1b1104fSBarry Smith   PetscFunctionBegin;
2608b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2609b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2611b1b1104fSBarry Smith }
2612b1b1104fSBarry Smith 
2613b1b1104fSBarry Smith /*@
2614f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2615f2afee66SBarry Smith 
26162ef1f0ffSBarry Smith   Not Collective
2617f2afee66SBarry Smith 
2618f2afee66SBarry Smith   Input Parameter:
2619f2afee66SBarry Smith . A - the matrix
2620f2afee66SBarry Smith 
2621f2afee66SBarry Smith   Output Parameter:
2622f2afee66SBarry Smith . nz - the number of nonzeros
2623f2afee66SBarry Smith 
2624f2afee66SBarry Smith   Level: advanced
2625f2afee66SBarry Smith 
2626fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2627f2afee66SBarry Smith @*/
2628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2629d71ae5a4SJacob Faibussowitsch {
2630f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2631f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2632dfebb78cSStefano Zampini   PetscBool   isaij;
2633f2afee66SBarry Smith 
2634f2afee66SBarry Smith   PetscFunctionBegin;
2635dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2636dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2637f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2639f2afee66SBarry Smith }
2640f2afee66SBarry Smith 
2641f2afee66SBarry Smith /*@
2642b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2643b1b1104fSBarry Smith 
2644c3339decSBarry Smith   Collective
2645b1b1104fSBarry Smith 
2646b1b1104fSBarry Smith   Input Parameters:
2647b1b1104fSBarry Smith + A  - the matrix
264811a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2649b1b1104fSBarry Smith 
265096a0c994SBarry Smith   Level: advanced
265196a0c994SBarry Smith 
2652fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2653b1b1104fSBarry Smith @*/
2654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2655d71ae5a4SJacob Faibussowitsch {
2656b1b1104fSBarry Smith   PetscFunctionBegin;
2657cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2659b1b1104fSBarry Smith }
2660b1b1104fSBarry Smith 
2661ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2662d71ae5a4SJacob Faibussowitsch {
2663b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2664b1b1104fSBarry Smith 
2665b1b1104fSBarry Smith   PetscFunctionBegin;
2666d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2667b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26689566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26691baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2670d0609cedSBarry Smith   PetscOptionsHeadEnd();
26713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2672b1b1104fSBarry Smith }
2673b1b1104fSBarry Smith 
2674ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2675d71ae5a4SJacob Faibussowitsch {
26767d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2677c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26787d68702bSBarry Smith 
26797d68702bSBarry Smith   PetscFunctionBegin;
2680c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26819566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26825519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2683b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26849566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2685b83222d8SBarry Smith     aij->nonew = nonew;
26867d68702bSBarry Smith   }
26879566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26897d68702bSBarry Smith }
26907d68702bSBarry Smith 
2691ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2692d71ae5a4SJacob Faibussowitsch {
2693a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2694a8ee9fb5SBarry Smith 
2695a8ee9fb5SBarry Smith   PetscFunctionBegin;
26969566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
26973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2698a8ee9fb5SBarry Smith }
26993b49f96aSBarry Smith 
270058c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2701dec0b466SHong Zhang {
2702dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2703dec0b466SHong Zhang 
2704dec0b466SHong Zhang   PetscFunctionBegin;
270558c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
270658c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2708dec0b466SHong Zhang }
2709dec0b466SHong Zhang 
2710cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2711cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2712cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2713cda55fadSBarry Smith                                        MatMult_MPIAIJ,
271497304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27157c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27167c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2717f4259b30SLisandro Dalcin                                        NULL,
2718f4259b30SLisandro Dalcin                                        NULL,
2719f4259b30SLisandro Dalcin                                        NULL,
2720f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2721f4259b30SLisandro Dalcin                                        NULL,
2722f4259b30SLisandro Dalcin                                        NULL,
272341f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2724b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
272597304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2726cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2727cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2728cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2729cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273097304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2731cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2732cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2733cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2734d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
2737f4259b30SLisandro Dalcin                                        NULL,
2738f4259b30SLisandro Dalcin                                        NULL,
273926cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2740f4259b30SLisandro Dalcin                                        NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
2742a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2743f4259b30SLisandro Dalcin                                        NULL,
2744d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2745f4259b30SLisandro Dalcin                                        NULL,
2746f4259b30SLisandro Dalcin                                        NULL,
2747f4259b30SLisandro Dalcin                                        NULL,
2748f4259b30SLisandro Dalcin                                        NULL,
2749d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27507dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2751cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2752cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2753cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2754d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2755cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27567d68702bSBarry Smith                                        MatShift_MPIAIJ,
275799e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2758564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
275973a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27608a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27618a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2762f4259b30SLisandro Dalcin                                        NULL,
2763f4259b30SLisandro Dalcin                                        NULL,
276493dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2765f4259b30SLisandro Dalcin                                        NULL,
2766cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
276772e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2768f4259b30SLisandro Dalcin                                        NULL,
27697dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2770e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2771e03a110bSBarry Smith                                        MatView_MPIAIJ,
2772f4259b30SLisandro Dalcin                                        NULL,
2773f4259b30SLisandro Dalcin                                        NULL,
27748bb0f5c6SPierre Jolivet                                        /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2775f4259b30SLisandro Dalcin                                        NULL,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
27788bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPIAIJ,
27798bb0f5c6SPierre Jolivet                                        /*69*/ MatGetRowMinAbs_MPIAIJ,
2780f4259b30SLisandro Dalcin                                        NULL,
2781f4259b30SLisandro Dalcin                                        NULL,
27828bb0f5c6SPierre Jolivet                                        MatFDColoringApply_AIJ,
2783b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2784f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
27858bb0f5c6SPierre Jolivet                                        /*75*/ NULL,
27868bb0f5c6SPierre Jolivet                                        NULL,
27878bb0f5c6SPierre Jolivet                                        NULL,
27888bb0f5c6SPierre Jolivet                                        MatLoad_MPIAIJ,
27898bb0f5c6SPierre Jolivet                                        NULL,
2790f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
27938bb0f5c6SPierre Jolivet                                        /*83*/ NULL,
2794f4259b30SLisandro Dalcin                                        NULL,
279526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
27968bb0f5c6SPierre Jolivet                                        MatPtAPNumeric_MPIAIJ_MPIAIJ,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27998bb0f5c6SPierre Jolivet                                        /*89*/ MatBindToCPU_MPIAIJ,
28008bb0f5c6SPierre Jolivet                                        MatProductSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
28032fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
28048bb0f5c6SPierre Jolivet                                        /*94*/ NULL,
28058bb0f5c6SPierre Jolivet                                        MatSetValuesRow_MPIAIJ,
280699cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
280769db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2808f4259b30SLisandro Dalcin                                        NULL,
28098bb0f5c6SPierre Jolivet                                        /*99*/ NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
28125494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2813f4259b30SLisandro Dalcin                                        NULL,
2814421480d9SBarry Smith                                        /*104*/ MatGetSeqNonzeroStructure_MPIAIJ,
2815f4259b30SLisandro Dalcin                                        NULL,
2816c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2817f4259b30SLisandro Dalcin                                        NULL,
2818421480d9SBarry Smith                                        NULL,
2819421480d9SBarry Smith                                        /*109*/ MatMultDiagonalBlock_MPIAIJ,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822f4259b30SLisandro Dalcin                                        NULL,
2823421480d9SBarry Smith                                        MatGetMultiProcBlock_MPIAIJ,
2824421480d9SBarry Smith                                        /*114*/ MatFindNonzeroRows_MPIAIJ,
2825a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2826bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2827a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
2828421480d9SBarry Smith                                        MatCreateSubMatricesMPI_MPIAIJ,
2829421480d9SBarry Smith                                        /*119*/ NULL,
2830f4259b30SLisandro Dalcin                                        NULL,
2831187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        NULL,
2834421480d9SBarry Smith                                        /*124*/ NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
28368bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_MPIAIJ,
2837f4259b30SLisandro Dalcin                                        NULL,
2838421480d9SBarry Smith                                        MatFDColoringSetUp_MPIXAIJ,
2839421480d9SBarry Smith                                        /*129*/ MatFindOffBlockDiagonalEntries_MPIAIJ,
28404222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
284272833a62Smarkadams4                                        NULL,
2843421480d9SBarry Smith                                        NULL,
2844421480d9SBarry Smith                                        /*134*/ MatCreateGraph_Simple_AIJ,
28452d776b49SBarry Smith                                        NULL,
2846eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28474cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
284842ce410bSJunchao Zhang                                        NULL,
2849421480d9SBarry Smith                                        /*139*/ NULL,
285042ce410bSJunchao Zhang                                        NULL,
285103db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
2852c2be7ffeSStefano Zampini                                        MatGetCurrentMemType_MPIAIJ,
2853c2be7ffeSStefano Zampini                                        NULL};
285436ce4990SBarry Smith 
2855ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2856d71ae5a4SJacob Faibussowitsch {
28572e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28582e8a6d31SBarry Smith 
28592e8a6d31SBarry Smith   PetscFunctionBegin;
28609566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28619566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28632e8a6d31SBarry Smith }
28642e8a6d31SBarry Smith 
2865ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2866d71ae5a4SJacob Faibussowitsch {
28672e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28682e8a6d31SBarry Smith 
28692e8a6d31SBarry Smith   PetscFunctionBegin;
28709566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28719566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28732e8a6d31SBarry Smith }
28748a729477SBarry Smith 
2875d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2876d71ae5a4SJacob Faibussowitsch {
2877ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28785d2a9ed1SStefano Zampini   PetscMPIInt size;
2879a23d5eceSKris Buschelman 
2880a23d5eceSKris Buschelman   PetscFunctionBegin;
2881ad79cf63SBarry Smith   if (B->hash_active) {
2882aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2883ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2884ad79cf63SBarry Smith   }
28859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
28869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2887899cda47SBarry Smith 
2888cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2889eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2890cb7b82ddSBarry Smith #else
28919566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2892cb7b82ddSBarry Smith #endif
28939566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
28949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
28959566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2896cb7b82ddSBarry Smith 
28979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2898c508b908SBarry Smith 
2899c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29009566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29019566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29039566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29049566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2905c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2906cb7b82ddSBarry Smith 
2907c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2908ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29099566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29109566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29119566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29129566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2913c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2914899cda47SBarry Smith 
29159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2917526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2918cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
291915001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2921a23d5eceSKris Buschelman }
2922a23d5eceSKris Buschelman 
2923ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2924d71ae5a4SJacob Faibussowitsch {
2925ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29264c51d546SAlexander   PetscBool   ondiagreset, offdiagreset, memoryreset;
2927846b4da1SFande Kong 
2928846b4da1SFande Kong   PetscFunctionBegin;
2929846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29304c51d546SAlexander   PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()");
29314c51d546SAlexander   if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
29324c51d546SAlexander 
29334c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset));
29344c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset));
29354c51d546SAlexander   memoryreset = (PetscBool)(ondiagreset || offdiagreset);
29365440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B)));
29374c51d546SAlexander   if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS);
29384c51d546SAlexander 
29399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
29414c51d546SAlexander   PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled");
29424c51d546SAlexander   PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
29439566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2944846b4da1SFande Kong 
2945846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2946846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2947846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
2948b3a35320SAlex Lindsay   /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */
2949b3a35320SAlex Lindsay   PetscCall(PetscObjectStateIncrease((PetscObject)B));
29503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2951846b4da1SFande Kong }
2952846b4da1SFande Kong 
2953d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2954d71ae5a4SJacob Faibussowitsch {
2955d6dfbf8fSBarry Smith   Mat         mat;
2956416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2957d6dfbf8fSBarry Smith 
29583a40ed3dSBarry Smith   PetscFunctionBegin;
2959f4259b30SLisandro Dalcin   *newmat = NULL;
29609566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29619566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29629566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29639566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2964273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2965e1b6402fSHong Zhang 
2966d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2967501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2968e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2969d6dfbf8fSBarry Smith 
297017699dbbSLois Curfman McInnes   a->size         = oldmat->size;
297117699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2972e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2973e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2974501880eeSStefano Zampini   a->rowindices   = NULL;
2975501880eeSStefano Zampini   a->rowvalues    = NULL;
2976bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2977d6dfbf8fSBarry Smith 
29789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2980420957c1SBarry Smith   if (matin->hash_active) {
2981420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2982420957c1SBarry Smith   } else {
2983420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29842ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2985aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2986eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2987b1fc9764SSatish Balay #else
29889566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
29899566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
2990b1fc9764SSatish Balay #endif
2991501880eeSStefano Zampini     } else a->colmap = NULL;
29923f41c07dSBarry Smith     if (oldmat->garray) {
2993b1d57f15SBarry Smith       PetscInt len;
2994d0f46423SBarry Smith       len = oldmat->B->cmap->n;
299584648c2dSPierre Jolivet       PetscCall(PetscMalloc1(len, &a->garray));
29969566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2997501880eeSStefano Zampini     } else a->garray = NULL;
2998d6dfbf8fSBarry Smith 
29990de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30000de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30010de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3002aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3003cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3004cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3005cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3006cff58d65SJunchao Zhang     }
30079566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30089566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3009420957c1SBarry Smith   }
30109566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30118a729477SBarry Smith   *newmat = mat;
30123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30138a729477SBarry Smith }
3014416022c9SBarry Smith 
3015d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3016d71ae5a4SJacob Faibussowitsch {
301752f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
301852f91c60SVaclav Hapla 
301952f91c60SVaclav Hapla   PetscFunctionBegin;
302052f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
302152f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3022c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30239566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30259566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
302652f91c60SVaclav Hapla   if (isbinary) {
30279566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
302852f91c60SVaclav Hapla   } else if (ishdf5) {
302952f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30309566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
303152f91c60SVaclav Hapla #else
303252f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
303352f91c60SVaclav Hapla #endif
303452f91c60SVaclav Hapla   } else {
303598921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
303652f91c60SVaclav Hapla   }
30373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303852f91c60SVaclav Hapla }
303952f91c60SVaclav Hapla 
3040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3041d71ae5a4SJacob Faibussowitsch {
30423ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30433ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30443ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30458fb81238SShri Abhyankar 
30468fb81238SShri Abhyankar   PetscFunctionBegin;
30479566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30488fb81238SShri Abhyankar 
30493ea6fe3dSLisandro Dalcin   /* read in matrix header */
30509566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
305108401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30529371c9d4SSatish Balay   M  = header[1];
30539371c9d4SSatish Balay   N  = header[2];
30549371c9d4SSatish Balay   nz = header[3];
305508401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
305608401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
305708401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
305808ea439dSMark F. Adams 
30593ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30609566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30613ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30623ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30633ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30649566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30668fb81238SShri Abhyankar 
30673ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30689566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3069aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30708fb81238SShri Abhyankar 
30713ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30729566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30749566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30759371c9d4SSatish Balay   rowidxs[0] = 0;
30769371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
30771690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3078462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
307908401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
308038b83642SBarry Smith   }
308138b83642SBarry Smith 
30823ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30849566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30859566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30863ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30879566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30889566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30899566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30918fb81238SShri Abhyankar }
30928fb81238SShri Abhyankar 
30933782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3094ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3095d71ae5a4SJacob Faibussowitsch {
30964aa3045dSJed Brown   IS          iscol_local;
3097c5e4d11fSDmitry Karpeev   PetscBool   isstride;
30989725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
30993782ecc7SHong Zhang 
31003782ecc7SHong Zhang   PetscFunctionBegin;
31013782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31029566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31033782ecc7SHong Zhang 
3104c5e4d11fSDmitry Karpeev   if (isstride) {
3105c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31069566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31079566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31089566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31099725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3110c5e4d11fSDmitry Karpeev   }
31113782ecc7SHong Zhang 
31129725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3113c5e4d11fSDmitry Karpeev   if (gisstride) {
3114c5e4d11fSDmitry Karpeev     PetscInt N;
31159566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31169566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31179566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31189566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3119c5e4d11fSDmitry Karpeev   } else {
3120c5bfad50SMark F. Adams     PetscInt cbs;
31219566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31229566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31239566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3124b79d0421SJed Brown   }
31253782ecc7SHong Zhang 
31263782ecc7SHong Zhang   *isseq = iscol_local;
31273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3128c5e4d11fSDmitry Karpeev }
31298d2139bdSHong Zhang 
3130ddfdf956SHong Zhang /*
31319c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31329c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3133ddfdf956SHong Zhang 
3134ddfdf956SHong Zhang  Input Parameters:
313527430b45SBarry Smith +   mat - matrix
313627430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31379c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
313827430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3139ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
314027430b45SBarry Smith 
314127430b45SBarry Smith  Output Parameters:
314227430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
314327430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
314427430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
314527430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3146ddfdf956SHong Zhang  */
3147835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3148d71ae5a4SJacob Faibussowitsch {
3149040216a4SHong Zhang   Vec             x, cmap;
3150040216a4SHong Zhang   const PetscInt *is_idx;
3151040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31529c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3153040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3154040216a4SHong Zhang   Mat             B    = a->B;
3155040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3156a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31578b3fa1f7SHong Zhang   MPI_Comm        comm;
31583a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31593782ecc7SHong Zhang 
31603782ecc7SHong Zhang   PetscFunctionBegin;
31619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31629566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31638b3fa1f7SHong Zhang 
3164ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31659566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31669566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31679566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31689566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31690a351717SHong Zhang 
31709c988bcaSHong Zhang   /* Get start indices */
31719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3172ddfdf956SHong Zhang   isstart -= ncols;
31739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3174040216a4SHong Zhang 
31759566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31769566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3179ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31808b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3181ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31829c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31838b3fa1f7SHong Zhang   }
31849566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31869566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31878b3fa1f7SHong Zhang 
31889c988bcaSHong Zhang   /* Get iscol_d */
31899566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31909566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
31919566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3192feb78a15SHong Zhang 
31939c988bcaSHong Zhang   /* Get isrow_d */
31949566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3195feb78a15SHong Zhang   rstart = mat->rmap->rstart;
31969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
31979566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
31989c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
31999566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3200feb78a15SHong Zhang 
32019566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32029566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32039566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3204feb78a15SHong Zhang 
32059c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32069566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32079566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3208ddfdf956SHong Zhang 
32099566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
321007250d77SHong Zhang 
32119566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32129566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
321364efcef9SHong Zhang 
32149c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3215ddfdf956SHong Zhang   /* off-process column indices */
32169c988bcaSHong Zhang   count = 0;
32179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3219feb78a15SHong Zhang 
32209566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32219566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32228b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3223f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32249c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32251c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32261c645242SHong Zhang       count++;
32278b3fa1f7SHong Zhang     }
32288b3fa1f7SHong Zhang   }
32299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
323107250d77SHong Zhang 
32329566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3233b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3234b6d9b4e0SHong Zhang 
32359566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32369c988bcaSHong Zhang   *garray = cmap1;
32379c988bcaSHong Zhang 
32389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32399566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3242040216a4SHong Zhang }
3243040216a4SHong Zhang 
3244b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3246d71ae5a4SJacob Faibussowitsch {
3247b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32481fd43edeSHong Zhang   Mat         M = NULL;
32493b00a383SHong Zhang   MPI_Comm    comm;
3250b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32513b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3252c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32533b00a383SHong Zhang 
32543b00a383SHong Zhang   PetscFunctionBegin;
32559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32563b00a383SHong Zhang 
32573b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3258b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32599566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
326028b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32613b00a383SHong Zhang 
32629566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
326328b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32643b00a383SHong Zhang 
32659566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
326628b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32673b00a383SHong Zhang 
3268b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3269b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32709566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32719566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
327248a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32739566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32749566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32753b00a383SHong Zhang 
32763b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3277c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3278b20e2604SHong Zhang     PetscInt  BsubN;
32793b00a383SHong Zhang 
3280b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32819566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32823b00a383SHong Zhang 
3283b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32859566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32863b00a383SHong Zhang 
3287c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3288c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3289c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3290c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3291c0c276a7Ssdargavi 
32929c988bcaSHong Zhang     /* Create submatrix M */
3293c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3294c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3295c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
32963b00a383SHong Zhang 
3297b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3298b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
32997cfce09cSHong Zhang 
33009566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3301b20e2604SHong Zhang     n = asub->B->cmap->N;
3302b20e2604SHong Zhang     if (BsubN > n) {
3303c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33047cfce09cSHong Zhang       const PetscInt *idx;
33059c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33069566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33077cfce09cSHong Zhang 
33089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33097cfce09cSHong Zhang       j = 0;
33109566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3311b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33127cfce09cSHong Zhang         if (j >= BsubN) break;
33139c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33147cfce09cSHong Zhang 
3315966bd95aSPierre Jolivet         PetscCheck(subgarray[i] == garray[j], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33167cfce09cSHong Zhang         idx_new[i] = idx[j++];
33177cfce09cSHong Zhang       }
33189566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33197cfce09cSHong Zhang 
33209566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33219566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33227cfce09cSHong Zhang 
3323966bd95aSPierre Jolivet     } else PetscCheck(BsubN >= n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
33247cfce09cSHong Zhang 
33259566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3326b20e2604SHong Zhang     *submat = M;
33273b00a383SHong Zhang 
3328e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33299566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33313b00a383SHong Zhang 
33329566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33339566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33343b00a383SHong Zhang 
33359566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33369566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33373b00a383SHong Zhang   }
33383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33393b00a383SHong Zhang }
33403b00a383SHong Zhang 
3341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3342d71ae5a4SJacob Faibussowitsch {
33431358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33443782ecc7SHong Zhang   PetscInt  csize;
334518e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33464a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33473782ecc7SHong Zhang   MPI_Comm  comm;
33483782ecc7SHong Zhang 
33493782ecc7SHong Zhang   PetscFunctionBegin;
3350bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3351a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33528f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33539566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3354d5761cdaSHong Zhang     if (isrow_d) {
3355d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3356d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3357d5761cdaSHong Zhang     } else {
33589566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3359d5761cdaSHong Zhang       if (iscol_local) {
3360d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3361d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3362d5761cdaSHong Zhang       }
3363d5761cdaSHong Zhang     }
33648f69fa7bSHong Zhang   } else {
3365e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
336618e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33679566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33683782ecc7SHong Zhang     if (!n) {
336918e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33703782ecc7SHong Zhang     } else {
33719566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33729566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3373ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33748f69fa7bSHong Zhang     }
33753782ecc7SHong Zhang 
3376e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
337718e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33789566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
337918e627e3SHong Zhang     if (!n) {
338018e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
338118e627e3SHong Zhang     } else {
33829566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33839566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
338418e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
338518e627e3SHong Zhang     }
338618e627e3SHong Zhang 
33879566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33885440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPI_C_BOOL, MPI_LAND, comm));
338918e627e3SHong Zhang     sameRowDist = tsameDist[0];
339018e627e3SHong Zhang   }
339118e627e3SHong Zhang 
339218e627e3SHong Zhang   if (sameRowDist) {
3393b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33943b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
33959566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
33963ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3397b20e2604SHong Zhang     } else { /* sameRowDist */
33983b00a383SHong Zhang       /* isrow has same processor distribution as mat */
33991358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34001358a193SHong Zhang         PetscBool sorted;
34019566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34029566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34039566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
340408401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34051358a193SHong Zhang 
34069566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34071358a193SHong Zhang         if (sorted) {
34081358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34099566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34103ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34113782ecc7SHong Zhang         }
34121358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
341348c0d076SHong Zhang         IS iscol_sub;
34149566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
341548c0d076SHong Zhang         if (iscol_sub) {
34169566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34173ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
341848c0d076SHong Zhang         }
34191358a193SHong Zhang       }
34201358a193SHong Zhang     }
34211358a193SHong Zhang   }
34223782ecc7SHong Zhang 
3423bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34243782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34259566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
342628b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34273782ecc7SHong Zhang   } else {
342848a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34291358a193SHong Zhang   }
34303782ecc7SHong Zhang 
34319566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34338f69fa7bSHong Zhang 
3434b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34359566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34369566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3437b79d0421SJed Brown   }
34383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34394aa3045dSJed Brown }
34404aa3045dSJed Brown 
3441feb78a15SHong Zhang /*@C
344211a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3443feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3444feb78a15SHong Zhang 
3445d083f849SBarry Smith   Collective
3446feb78a15SHong Zhang 
3447feb78a15SHong Zhang   Input Parameters:
3448feb78a15SHong Zhang + comm   - MPI communicator
3449c0c276a7Ssdargavi . M      - the global row size
3450c0c276a7Ssdargavi . N      - the global column size
3451feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3452c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3453a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter.
3454feb78a15SHong Zhang 
3455feb78a15SHong Zhang   Output Parameter:
34562ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
345727430b45SBarry Smith 
3458feb78a15SHong Zhang   Level: advanced
3459feb78a15SHong Zhang 
3460feb78a15SHong Zhang   Notes:
346111a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346211a5261eSBarry Smith 
3463c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3464feb78a15SHong Zhang 
3465a3156c1cSJunchao Zhang   If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update
3466a3156c1cSJunchao Zhang   `B`'s copy on device.  We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or
3467a3156c1cSJunchao Zhang   `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray`
3468a3156c1cSJunchao Zhang   yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`.
3469a3156c1cSJunchao Zhang 
3470b1dff882SJunchao Zhang   The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others.
3471b1dff882SJunchao Zhang 
34721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3473feb78a15SHong Zhang @*/
3474c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3475d71ae5a4SJacob Faibussowitsch {
3476c0c276a7Ssdargavi   PetscInt    m, n;
34774ab4d6f4SRichard Tran Mills   MatType     mpi_mat_type;
3478f18d1d10SJunchao Zhang   Mat_MPIAIJ *mpiaij;
3479f18d1d10SJunchao Zhang   Mat         C;
3480feb78a15SHong Zhang 
3481feb78a15SHong Zhang   PetscFunctionBegin;
3482f18d1d10SJunchao Zhang   PetscCall(MatCreate(comm, &C));
34839566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348408401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348558b7e2c1SStefano Zampini   PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3486feb78a15SHong Zhang 
3487f18d1d10SJunchao Zhang   PetscCall(MatSetSizes(C, m, n, M, N));
34884ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34894ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
3490f18d1d10SJunchao Zhang   PetscCall(MatSetType(C, mpi_mat_type));
3491a3156c1cSJunchao Zhang   if (!garray) {
3492a3156c1cSJunchao Zhang     const PetscScalar *ba;
3493a3156c1cSJunchao Zhang 
3494a3156c1cSJunchao Zhang     B->nonzerostate++;
3495a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */
3496a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3497a3156c1cSJunchao Zhang   }
34984ab4d6f4SRichard Tran Mills 
3499f18d1d10SJunchao Zhang   PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs));
3500f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->rmap));
3501f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->cmap));
3502feb78a15SHong Zhang 
3503f18d1d10SJunchao Zhang   mpiaij              = (Mat_MPIAIJ *)C->data;
3504c0c276a7Ssdargavi   mpiaij->A           = A;
3505c0c276a7Ssdargavi   mpiaij->B           = B;
3506c0c276a7Ssdargavi   mpiaij->garray      = garray;
3507f18d1d10SJunchao Zhang   C->preallocated     = PETSC_TRUE;
3508f18d1d10SJunchao Zhang   C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3509c0c276a7Ssdargavi 
3510f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3511f18d1d10SJunchao Zhang   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3512c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3513c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3514c0c276a7Ssdargavi    */
3515f18d1d10SJunchao Zhang   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3516f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3517f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
3518f18d1d10SJunchao Zhang   *mat = C;
35193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3520feb78a15SHong Zhang }
3521feb78a15SHong Zhang 
3522ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35234aa3045dSJed Brown 
3524d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3525d71ae5a4SJacob Faibussowitsch {
352698b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
352785f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
352898b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35291fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
353098b658c4SHong Zhang   MatScalar      *aa;
353100e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3532a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
353398b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
353498b658c4SHong Zhang   IS              iscol_sub, iscmap;
353598b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
353618e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3537a31a438cSHong Zhang   MPI_Comm        comm;
35387e2c5f70SBarry Smith 
3539a0ff6018SBarry Smith   PetscFunctionBegin;
35409566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3541d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35429566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
354328b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35449566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3545d5761cdaSHong Zhang 
35469566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
354728b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3548d5761cdaSHong Zhang 
35499566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
355028b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3551d5761cdaSHong Zhang 
35529566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3553d5761cdaSHong Zhang 
3554d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35553b00a383SHong Zhang     PetscBool flg;
35563b00a383SHong Zhang 
35579566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35589566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3559bcae8d28SHong Zhang 
35603b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3561366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35629566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3563366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35645440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3565366a327dSHong Zhang     if (allcolumns) {
3566366a327dSHong Zhang       iscol_sub = iscol_local;
35679566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35689566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3569366a327dSHong Zhang 
35703b00a383SHong Zhang     } else {
35711358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3572244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35739566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35749566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35759566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35768d2139bdSHong Zhang       count = 0;
3577a31a438cSHong Zhang       k     = 0;
3578a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3579a31a438cSHong Zhang         j = is_idx[i];
3580a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3581a31a438cSHong Zhang           /* diagonal part of mat */
35828d2139bdSHong Zhang           idx[count]     = j;
3583366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
35844a3daf6eSHong Zhang         } else if (Bn) {
3585a31a438cSHong Zhang           /* off-diagonal part of mat */
3586a31a438cSHong Zhang           if (j == garray[k]) {
35878d2139bdSHong Zhang             idx[count]     = j;
3588a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3589a31a438cSHong Zhang           } else if (j > garray[k]) {
3590a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3591a31a438cSHong Zhang             if (j == garray[k]) {
3592a31a438cSHong Zhang               idx[count]     = j;
3593a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
35948d2139bdSHong Zhang             }
35958d2139bdSHong Zhang           }
35968d2139bdSHong Zhang         }
35978d2139bdSHong Zhang       }
35989566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
35998d2139bdSHong Zhang 
36009566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36019566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36029566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3603b6d9b4e0SHong Zhang 
36049566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3605a31a438cSHong Zhang     }
36068b3fa1f7SHong Zhang 
36073b00a383SHong Zhang     /* (3) Create sequential Msub */
36089566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3609d5761cdaSHong Zhang   }
36108d2139bdSHong Zhang 
36119566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
361257508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
361398b658c4SHong Zhang   ii  = aij->i;
36149566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3615a0ff6018SBarry Smith 
3616a0ff6018SBarry Smith   /*
3617a0ff6018SBarry Smith       m - number of local rows
3618a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3619a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3620a0ff6018SBarry Smith   */
36219566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
362298b658c4SHong Zhang 
36233b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36243b00a383SHong Zhang     /* (4) Create parallel newmat */
362598b658c4SHong Zhang     PetscMPIInt rank, size;
3626bcae8d28SHong Zhang     PetscInt    csize;
362798b658c4SHong Zhang 
36289566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36299566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
363000e6dbe6SBarry Smith 
3631a0ff6018SBarry Smith     /*
363200e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
363300e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3634a0ff6018SBarry Smith     */
363500e6dbe6SBarry Smith 
363600e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36379566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36386a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36399566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3640a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3641e2c4fddaSBarry Smith         nlocal = m;
36426a6a5d1dSBarry Smith       } else {
3643a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3644ab50ec6bSBarry Smith       }
3645ab50ec6bSBarry Smith     } else {
36466a6a5d1dSBarry Smith       nlocal = csize;
36476a6a5d1dSBarry Smith     }
36489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
364900e6dbe6SBarry Smith     rstart = rend - nlocal;
3650aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
365100e6dbe6SBarry Smith 
365200e6dbe6SBarry Smith     /* next, compute all the lengths */
365398b658c4SHong Zhang     jj = aij->j;
36549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
365500e6dbe6SBarry Smith     olens = dlens + m;
365600e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
365700e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
365800e6dbe6SBarry Smith       olen = 0;
365900e6dbe6SBarry Smith       dlen = 0;
366000e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
366115b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
366200e6dbe6SBarry Smith         else dlen++;
366300e6dbe6SBarry Smith         jj++;
366400e6dbe6SBarry Smith       }
366500e6dbe6SBarry Smith       olens[i] = olen;
366600e6dbe6SBarry Smith       dlens[i] = dlen;
366700e6dbe6SBarry Smith     }
3668b6d9b4e0SHong Zhang 
36699566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36709566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
367198b658c4SHong Zhang 
36729566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36739566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36749566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36759566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36769566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36779566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3678d5761cdaSHong Zhang 
3679d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3680a0ff6018SBarry Smith     M = *newmat;
36819566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
368208401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
36839566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3684c48de900SBarry Smith     /*
3685c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3686c48de900SBarry Smith        rather than the slower MatSetValues().
3687c48de900SBarry Smith     */
3688c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3689c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3690a0ff6018SBarry Smith   }
3691548ecf4dSHong Zhang 
36923b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
36939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
36949566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
369598b658c4SHong Zhang 
369698b658c4SHong Zhang   jj = aij->j;
36979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3698a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3699a0ff6018SBarry Smith     row = rstart + i;
370000e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
370115b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37029566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37039371c9d4SSatish Balay     jj += nz;
37049371c9d4SSatish Balay     aa += nz;
3705a0ff6018SBarry Smith   }
37069566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37079566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3708a0ff6018SBarry Smith 
37099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3711fee21e36SBarry Smith 
37129566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
371398b658c4SHong Zhang 
371498b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3715fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37163b00a383SHong Zhang     *newmat = M;
3717f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37189566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
371998b658c4SHong Zhang 
3720f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37219566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
372298b658c4SHong Zhang 
3723f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37249566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3725bcae8d28SHong Zhang 
3726bcae8d28SHong Zhang     if (iscol_local) {
3727f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37289566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3729bcae8d28SHong Zhang     }
373098b658c4SHong Zhang   }
37313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3732a0ff6018SBarry Smith }
3733273d9f13SBarry Smith 
3734df40acb1SHong Zhang /*
3735df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3736df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3737df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3738df40acb1SHong Zhang 
373911a5261eSBarry Smith   This requires a sequential iscol with all indices.
3740df40acb1SHong Zhang */
3741d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3742d71ae5a4SJacob Faibussowitsch {
3743df40acb1SHong Zhang   PetscMPIInt rank, size;
3744df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3745df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3746df40acb1SHong Zhang   Mat         M, Mreuse;
374798b658c4SHong Zhang   MatScalar  *aa, *vwork;
3748df40acb1SHong Zhang   MPI_Comm    comm;
3749df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37500b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3751df40acb1SHong Zhang 
3752df40acb1SHong Zhang   PetscFunctionBegin;
37539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3756df40acb1SHong Zhang 
37570b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37589566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37599566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37600b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37615440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37620b27a90eSHong Zhang 
3763df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37649566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
376528b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37669566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3767df40acb1SHong Zhang   } else {
37689566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3769df40acb1SHong Zhang   }
3770df40acb1SHong Zhang 
3771df40acb1SHong Zhang   /*
3772df40acb1SHong Zhang       m - number of local rows
3773df40acb1SHong Zhang       n - number of columns (same on all processors)
3774df40acb1SHong Zhang       rstart - first row in new global matrix generated
3775df40acb1SHong Zhang   */
37769566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37779566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3778df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
377957508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3780df40acb1SHong Zhang     ii  = aij->i;
3781df40acb1SHong Zhang     jj  = aij->j;
3782df40acb1SHong Zhang 
3783df40acb1SHong Zhang     /*
3784df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3785df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3786df40acb1SHong Zhang     */
3787df40acb1SHong Zhang 
3788df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3789df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
37909566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3791df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3792df40acb1SHong Zhang         nlocal = m;
3793df40acb1SHong Zhang       } else {
3794df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3795df40acb1SHong Zhang       }
3796df40acb1SHong Zhang     } else {
3797df40acb1SHong Zhang       nlocal = csize;
3798df40acb1SHong Zhang     }
37999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3800df40acb1SHong Zhang     rstart = rend - nlocal;
3801aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3802df40acb1SHong Zhang 
3803df40acb1SHong Zhang     /* next, compute all the lengths */
38049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3805df40acb1SHong Zhang     olens = dlens + m;
3806df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3807df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3808df40acb1SHong Zhang       olen = 0;
3809df40acb1SHong Zhang       dlen = 0;
3810df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3811df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3812df40acb1SHong Zhang         else dlen++;
3813df40acb1SHong Zhang         jj++;
3814df40acb1SHong Zhang       }
3815df40acb1SHong Zhang       olens[i] = olen;
3816df40acb1SHong Zhang       dlens[i] = dlen;
3817df40acb1SHong Zhang     }
38189566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38199566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38209566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38219566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38229566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38239566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3824df40acb1SHong Zhang   } else {
3825df40acb1SHong Zhang     PetscInt ml, nl;
3826df40acb1SHong Zhang 
3827df40acb1SHong Zhang     M = *newmat;
38289566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
382908401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38309566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3831df40acb1SHong Zhang     /*
3832df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3833df40acb1SHong Zhang        rather than the slower MatSetValues().
3834df40acb1SHong Zhang     */
3835df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3836df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3837df40acb1SHong Zhang   }
38389566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
383957508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3840df40acb1SHong Zhang   ii  = aij->i;
3841df40acb1SHong Zhang   jj  = aij->j;
38422e5835c6SStefano Zampini 
38432e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3845df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3846df40acb1SHong Zhang     row   = rstart + i;
3847df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38489371c9d4SSatish Balay     cwork = jj;
38498e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38509371c9d4SSatish Balay     vwork = aa;
38518e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38529566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3853df40acb1SHong Zhang   }
38549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3855df40acb1SHong Zhang 
38569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3858df40acb1SHong Zhang   *newmat = M;
3859df40acb1SHong Zhang 
3860df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3861df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38629566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38639566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3864df40acb1SHong Zhang   }
38653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3866df40acb1SHong Zhang }
3867df40acb1SHong Zhang 
3868ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3869d71ae5a4SJacob Faibussowitsch {
38706a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38719f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3872ccd8e176SBarry Smith   const PetscInt *JJ;
3873eeb24464SBarry Smith   PetscBool       nooffprocentries;
38746a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3875ccd8e176SBarry Smith 
3876ccd8e176SBarry Smith   PetscFunctionBegin;
38779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3879d0f46423SBarry Smith   m       = B->rmap->n;
3880d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3881d0f46423SBarry Smith   cend    = B->cmap->rend;
3882d0f46423SBarry Smith   rstart  = B->rmap->rstart;
38839f0612e4SBarry Smith   irstart = Ii[0];
3884899cda47SBarry Smith 
38859566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3886ccd8e176SBarry Smith 
388776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
38888f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3889ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
38909f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
389108401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
389208401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
389308401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3894ecc77c7aSBarry Smith     }
389576bd3646SJed Brown   }
3896ecc77c7aSBarry Smith 
38978f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3898b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
38999f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3900ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3901ccd8e176SBarry Smith     d       = 0;
39020daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39030daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3904ccd8e176SBarry Smith     }
3905ccd8e176SBarry Smith     d_nnz[i] = d;
3906ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3907ccd8e176SBarry Smith   }
39089566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39099566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3910ccd8e176SBarry Smith 
39118f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3912ccd8e176SBarry Smith     ii = i + rstart;
39139f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3914ccd8e176SBarry Smith   }
3915eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3916eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3919eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3920ccd8e176SBarry Smith 
39216a3d2595SBarry Smith   /* count number of entries below block diagonal */
39226a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39236a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39246a3d2595SBarry Smith   Aij->ld = ld;
39256a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39266a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39276a3d2595SBarry Smith     j   = 0;
3928ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39296a3d2595SBarry Smith     ld[i] = j;
3930720a2405SPierre Jolivet     if (J) J += nnz;
39316a3d2595SBarry Smith   }
39326a3d2595SBarry Smith 
39339566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3935ccd8e176SBarry Smith }
3936ccd8e176SBarry Smith 
39371eea217eSSatish Balay /*@
393811a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3939ccd8e176SBarry Smith   (the default parallel PETSc format).
3940ccd8e176SBarry Smith 
3941d083f849SBarry Smith   Collective
3942ccd8e176SBarry Smith 
3943ccd8e176SBarry Smith   Input Parameters:
3944a1661176SMatthew Knepley + B - the matrix
3945d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3946d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3947ccd8e176SBarry Smith - v - optional values in the matrix
3948ccd8e176SBarry Smith 
3949ccd8e176SBarry Smith   Level: developer
3950ccd8e176SBarry Smith 
395112251496SSatish Balay   Notes:
39522ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39532ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
395411a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
395512251496SSatish Balay 
39562ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
395712251496SSatish Balay 
3958a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3959a4bd8bc0SBarry Smith 
3960a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3961a4bd8bc0SBarry Smith 
3962a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3963a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3964a4bd8bc0SBarry Smith 
396512251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
396612251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3967c5e4d11fSDmitry Karpeev   as shown
396827430b45SBarry Smith .vb
396927430b45SBarry Smith         1 0 0
397027430b45SBarry Smith         2 0 3     P0
397127430b45SBarry Smith        -------
397227430b45SBarry Smith         4 5 6     P1
397327430b45SBarry Smith 
397427430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
397527430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
397627430b45SBarry Smith         j =  {0,0,2}  [size = 3]
397727430b45SBarry Smith         v =  {1,2,3}  [size = 3]
397827430b45SBarry Smith 
397927430b45SBarry Smith      Process1 [P1] rows_owned=[2]
398027430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
398127430b45SBarry Smith         j =  {0,1,2}  [size = 3]
398227430b45SBarry Smith         v =  {4,5,6}  [size = 3]
398327430b45SBarry Smith .ve
398412251496SSatish Balay 
3985fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
3986a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
3987ccd8e176SBarry Smith @*/
3988d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
3989d71ae5a4SJacob Faibussowitsch {
3990ccd8e176SBarry Smith   PetscFunctionBegin;
3991cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
39923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3993ccd8e176SBarry Smith }
3994ccd8e176SBarry Smith 
39955d83a8b1SBarry Smith /*@
399611a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
3997273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
3998273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
399920f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4000273d9f13SBarry Smith 
4001d083f849SBarry Smith   Collective
4002273d9f13SBarry Smith 
4003273d9f13SBarry Smith   Input Parameters:
40041c4f3114SJed Brown + B     - the matrix
4005273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4006273d9f13SBarry Smith            (same value is used for all local rows)
4007273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4008273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40092ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4010273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40113287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40123287b5eaSJed Brown            the diagonal entry even if it is zero.
4013273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4014273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4015273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4016273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40172ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4018273d9f13SBarry Smith            structure. The size of this array is equal to the number
4019273d9f13SBarry Smith            of local rows, i.e 'm'.
4020273d9f13SBarry Smith 
40212920cce0SJacob Faibussowitsch   Example Usage:
402227430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
402327430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
402427430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
402527430b45SBarry Smith   as follows
402627430b45SBarry Smith 
402727430b45SBarry Smith .vb
402827430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
402927430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
403027430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
403127430b45SBarry Smith     -------------------------------------
403227430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
403327430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
403427430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
403527430b45SBarry Smith     -------------------------------------
403627430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
403727430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
403827430b45SBarry Smith .ve
403927430b45SBarry Smith 
404027430b45SBarry Smith   This can be represented as a collection of submatrices as
404127430b45SBarry Smith .vb
404227430b45SBarry Smith       A B C
404327430b45SBarry Smith       D E F
404427430b45SBarry Smith       G H I
404527430b45SBarry Smith .ve
404627430b45SBarry Smith 
404727430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
404827430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
404927430b45SBarry Smith 
405027430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
405127430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
405227430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
405327430b45SBarry Smith 
405427430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
405527430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
405627430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
405727430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
405827430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40595163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
406027430b45SBarry Smith 
406120f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40625163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40635163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40645163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40655163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
406620f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
406727430b45SBarry Smith .vb
406827430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
406927430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
407027430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
407127430b45SBarry Smith .ve
407220f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
407327430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
407427430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
407527430b45SBarry Smith   34 values.
407627430b45SBarry Smith 
407720f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
407827430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
407920f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
408027430b45SBarry Smith .vb
408127430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
408227430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
408327430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
408427430b45SBarry Smith .ve
408527430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
408627430b45SBarry Smith   hence pre-allocation is perfect.
408727430b45SBarry Smith 
408827430b45SBarry Smith   Level: intermediate
408927430b45SBarry Smith 
409027430b45SBarry Smith   Notes:
409149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
409249a6f317SBarry Smith 
409327430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
40940598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4095651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4096273d9f13SBarry Smith 
4097273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4098273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4099273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4100273d9f13SBarry Smith 
4101273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4102a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4103a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4104a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4105a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4106a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4107a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4108a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4109a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4110273d9f13SBarry Smith 
41112ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4112273d9f13SBarry Smith 
411327430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4114aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
411527430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4116aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4117aa95bbe8SBarry Smith 
41181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4119a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4120273d9f13SBarry Smith @*/
4121d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4122d71ae5a4SJacob Faibussowitsch {
4123273d9f13SBarry Smith   PetscFunctionBegin;
41246ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41256ba663aaSJed Brown   PetscValidType(B, 1);
4126cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4128273d9f13SBarry Smith }
4129273d9f13SBarry Smith 
413058d36128SBarry Smith /*@
413111a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41328f8f2f0dSBarry Smith   CSR format for the local rows.
41332fb0ec9aSBarry Smith 
4134d083f849SBarry Smith   Collective
41352fb0ec9aSBarry Smith 
41362fb0ec9aSBarry Smith   Input Parameters:
41372fb0ec9aSBarry Smith + comm - MPI communicator
413811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41392fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4140d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4141d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4142d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4143d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41445693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41455693b835SJunchao Zhang . j    - global column indices
4146f1f2ae84SBarry Smith - a    - optional matrix values
41472fb0ec9aSBarry Smith 
41482fb0ec9aSBarry Smith   Output Parameter:
41492fb0ec9aSBarry Smith . mat - the matrix
415003bfb495SBarry Smith 
41512fb0ec9aSBarry Smith   Level: intermediate
41522fb0ec9aSBarry Smith 
41532fb0ec9aSBarry Smith   Notes:
41542ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4155d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4156d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41572fb0ec9aSBarry Smith 
41582ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
415912251496SSatish Balay 
41605693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4161a4bd8bc0SBarry Smith 
41625693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4163a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4164a4bd8bc0SBarry Smith 
416512251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4166d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4167c5e4d11fSDmitry Karpeev   as shown
41682ef1f0ffSBarry Smith .vb
41692ef1f0ffSBarry Smith         1 0 0
41702ef1f0ffSBarry Smith         2 0 3     P0
41712ef1f0ffSBarry Smith        -------
41722ef1f0ffSBarry Smith         4 5 6     P1
41738f8f2f0dSBarry Smith 
41742ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41752ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41762ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41772ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41782fb0ec9aSBarry Smith 
41792ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41802ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41812ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
41822ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
41832ef1f0ffSBarry Smith .ve
41842ef1f0ffSBarry Smith 
4185d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
41865693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
41872fb0ec9aSBarry Smith @*/
4188d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4189d71ae5a4SJacob Faibussowitsch {
41902fb0ec9aSBarry Smith   PetscFunctionBegin;
419108401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
419208401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
41939566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
41949566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
41959566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
41969566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
41979566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
41983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41992fb0ec9aSBarry Smith }
42002fb0ec9aSBarry Smith 
42018f8f2f0dSBarry Smith /*@
420211a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42032ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42042ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42056a3d2595SBarry Smith 
42066a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42078f8f2f0dSBarry Smith 
42088f8f2f0dSBarry Smith   Collective
42098f8f2f0dSBarry Smith 
42108f8f2f0dSBarry Smith   Input Parameters:
42118f8f2f0dSBarry Smith + mat - the matrix
421211a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42138f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
421411a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42158f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
421611a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
421711a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42188f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42198f8f2f0dSBarry Smith . J   - column indices
42208f8f2f0dSBarry Smith - v   - matrix values
42218f8f2f0dSBarry Smith 
42222ef1f0ffSBarry Smith   Level: deprecated
42238f8f2f0dSBarry Smith 
42241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4225a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42268f8f2f0dSBarry Smith @*/
4227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4228d71ae5a4SJacob Faibussowitsch {
42296a3d2595SBarry Smith   PetscInt        nnz, i;
42308f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42318f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4232fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4233fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42348f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42356a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42366a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42378f8f2f0dSBarry Smith 
42388f8f2f0dSBarry Smith   PetscFunctionBegin;
4239aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
424008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
424108401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
424208401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42438f8f2f0dSBarry Smith 
42449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42468f8f2f0dSBarry Smith 
42478f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42484c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42494c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42504c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42514c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42524c17f1ccSBarry Smith       }
42534c17f1ccSBarry Smith     }
42548f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42558f8f2f0dSBarry Smith     Iii = Ii[i];
42568f8f2f0dSBarry Smith     ldi = ld[i];
42578f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42589566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42599566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42609566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42618f8f2f0dSBarry Smith     ad += md;
42628f8f2f0dSBarry Smith     ao += nnz - md;
42638f8f2f0dSBarry Smith   }
42648f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42658f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42689566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42699566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42709566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42738f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42758f8f2f0dSBarry Smith }
42768f8f2f0dSBarry Smith 
42776a3d2595SBarry Smith /*@
427811a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42796a3d2595SBarry Smith 
42806a3d2595SBarry Smith   Collective
42816a3d2595SBarry Smith 
42826a3d2595SBarry Smith   Input Parameters:
42836a3d2595SBarry Smith + mat - the matrix
42846a3d2595SBarry Smith - v   - matrix values, stored by row
42856a3d2595SBarry Smith 
42866a3d2595SBarry Smith   Level: intermediate
42876a3d2595SBarry Smith 
4288a4bd8bc0SBarry Smith   Notes:
42896a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
42906a3d2595SBarry Smith 
4291a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4292a4bd8bc0SBarry Smith 
42931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4294a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42956a3d2595SBarry Smith @*/
4296d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4297d71ae5a4SJacob Faibussowitsch {
42986a3d2595SBarry Smith   PetscInt        nnz, i, m;
42996a3d2595SBarry Smith   PetscBool       nooffprocentries;
43006a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43016a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43026a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43036a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43046a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43056a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43066a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43076a3d2595SBarry Smith 
43086a3d2595SBarry Smith   PetscFunctionBegin;
43096a3d2595SBarry Smith   m = mat->rmap->n;
43106a3d2595SBarry Smith 
43116a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43126a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43136a3d2595SBarry Smith   Iii = 0;
43146a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43156a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43166a3d2595SBarry Smith     ldi = ld[i];
43176a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43186a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43196a3d2595SBarry Smith     ad += md;
4320810441c8SPierre Jolivet     if (ao) {
4321810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4322810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43236a3d2595SBarry Smith       ao += nnz - md;
4324810441c8SPierre Jolivet     }
43256a3d2595SBarry Smith     Iii += nnz;
43266a3d2595SBarry Smith   }
43276a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43286a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43296a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43306a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43316a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43326a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43336a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43346a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43356a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43366a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43386a3d2595SBarry Smith }
43396a3d2595SBarry Smith 
43405d83a8b1SBarry Smith /*@
434111a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4342273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4343273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43442ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4345273d9f13SBarry Smith 
4346d083f849SBarry Smith   Collective
4347273d9f13SBarry Smith 
4348273d9f13SBarry Smith   Input Parameters:
4349273d9f13SBarry Smith + comm  - MPI communicator
435011a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4351273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4352273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4353273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
435445f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4355273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
435611a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
435711a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4358273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4359273d9f13SBarry Smith           (same value is used for all local rows)
4360273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4361273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43622ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4363273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4364273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4365273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4366273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4367273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43682ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4369273d9f13SBarry Smith           structure. The size of this array is equal to the number
4370273d9f13SBarry Smith           of local rows, i.e 'm'.
4371273d9f13SBarry Smith 
4372273d9f13SBarry Smith   Output Parameter:
4373273d9f13SBarry Smith . A - the matrix
4374273d9f13SBarry Smith 
437527430b45SBarry Smith   Options Database Keys:
437627430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
437727430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
437827430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4379727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4380727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
438127430b45SBarry Smith 
43822ef1f0ffSBarry Smith   Level: intermediate
43832ef1f0ffSBarry Smith 
438427430b45SBarry Smith   Notes:
438577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4386f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
438711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4388175b88e8SBarry Smith 
438949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
439049a6f317SBarry Smith 
43912ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
43922ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4393273d9f13SBarry Smith   storage requirements for this matrix.
4394273d9f13SBarry Smith 
439511a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4396273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4397273d9f13SBarry Smith   that argument.
4398273d9f13SBarry Smith 
4399727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4400727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4401727bdf9bSBarry Smith 
4402273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4403273d9f13SBarry Smith   (possibly both).
4404273d9f13SBarry Smith 
440533a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4406727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4407727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4408727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
440933a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4410273d9f13SBarry Smith 
441133a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
441233a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4413df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
441433a7c187SSatish Balay 
441533a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
441633a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
441733a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
441833a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
441933a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
442033a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44210b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44220b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
442333a7c187SSatish Balay 
442433a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
442533a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
442633a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
442733a7c187SSatish Balay   local matrix (a rectangular submatrix).
4428273d9f13SBarry Smith 
44292ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4430273d9f13SBarry Smith 
443197d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44322ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4433da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4434da57b5cdSKarl Rupp .vb
44352ef1f0ffSBarry Smith   MatCreate(..., &A);
44362ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44372ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44382ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4439da57b5cdSKarl Rupp .ve
444097d05335SKris Buschelman 
4441273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4442273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4443273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4444273d9f13SBarry Smith 
44452920cce0SJacob Faibussowitsch   Example Usage:
4446273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4447273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4448273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4449efc377ccSKarl Rupp   as follows
4450273d9f13SBarry Smith 
4451273d9f13SBarry Smith .vb
4452273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4453273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4454273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4455273d9f13SBarry Smith     -------------------------------------
4456273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4457273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4458273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4459273d9f13SBarry Smith     -------------------------------------
4460273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4461273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4462273d9f13SBarry Smith .ve
4463273d9f13SBarry Smith 
4464da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4465273d9f13SBarry Smith 
4466273d9f13SBarry Smith .vb
4467273d9f13SBarry Smith       A B C
4468273d9f13SBarry Smith       D E F
4469273d9f13SBarry Smith       G H I
4470273d9f13SBarry Smith .ve
4471273d9f13SBarry Smith 
4472273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4473273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4474273d9f13SBarry Smith 
4475273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4476273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4477273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4478273d9f13SBarry Smith 
4479273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4480273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4481273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4482273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
448327430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
44845163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4485273d9f13SBarry Smith 
44862ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
44875163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
44885163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
44895163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
44905163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
44912ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4492273d9f13SBarry Smith .vb
449327430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
449427430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
449527430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4496273d9f13SBarry Smith .ve
44972ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4498273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4499273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4500273d9f13SBarry Smith   34 values.
4501273d9f13SBarry Smith 
45022ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4503a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4504da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4505273d9f13SBarry Smith .vb
450627430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
450727430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
450827430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4509273d9f13SBarry Smith .ve
4510273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4511273d9f13SBarry Smith   hence pre-allocation is perfect.
4512273d9f13SBarry Smith 
45131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4514727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4515727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4516273d9f13SBarry Smith @*/
4517d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4518d71ae5a4SJacob Faibussowitsch {
4519b1d57f15SBarry Smith   PetscMPIInt size;
4520273d9f13SBarry Smith 
4521273d9f13SBarry Smith   PetscFunctionBegin;
45229566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4525273d9f13SBarry Smith   if (size > 1) {
45269566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4528273d9f13SBarry Smith   } else {
45299566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45309566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4531273d9f13SBarry Smith   }
45323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4533273d9f13SBarry Smith }
4534195d93cdSBarry Smith 
4535127ca0efSMatthew Knepley /*@C
45360ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4537127ca0efSMatthew Knepley 
45382ef1f0ffSBarry Smith   Not Collective
4539127ca0efSMatthew Knepley 
4540127ca0efSMatthew Knepley   Input Parameter:
454111a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4542127ca0efSMatthew Knepley 
4543127ca0efSMatthew Knepley   Output Parameters:
454411a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
454511a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45462ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4547127ca0efSMatthew Knepley 
45480ab4885dSBarry Smith   Level: intermediate
45490ab4885dSBarry Smith 
455011a5261eSBarry Smith   Note:
45512ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45522ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45532ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4554127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4555127ca0efSMatthew Knepley 
4556ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4557127ca0efSMatthew Knepley @*/
4558d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4559d71ae5a4SJacob Faibussowitsch {
4560195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
456104cf37c7SBarry Smith   PetscBool   flg;
4562b1d57f15SBarry Smith 
4563195d93cdSBarry Smith   PetscFunctionBegin;
45649566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
456528b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
456621e72a00SBarry Smith   if (Ad) *Ad = a->A;
456721e72a00SBarry Smith   if (Ao) *Ao = a->B;
456821e72a00SBarry Smith   if (colmap) *colmap = a->garray;
45693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4570195d93cdSBarry Smith }
4571a2243be0SBarry Smith 
4572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4573d71ae5a4SJacob Faibussowitsch {
4574110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
45759b8102ccSHong Zhang   PetscInt    *indx;
4576110bb6e1SHong Zhang   PetscScalar *values;
4577421ddf4dSJunchao Zhang   MatType      rootType;
45789b8102ccSHong Zhang 
45799b8102ccSHong Zhang   PetscFunctionBegin;
45809566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4581110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4582110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4583110bb6e1SHong Zhang 
458448a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4585a22543b6SHong Zhang     /* Check sum(n) = N */
4586462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
458708401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4588a22543b6SHong Zhang 
45899566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
45909b8102ccSHong Zhang     rstart -= m;
45919b8102ccSHong Zhang 
4592d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
45939b8102ccSHong Zhang     for (i = 0; i < m; i++) {
45949566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
45959566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
45969566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
45979b8102ccSHong Zhang     }
45989b8102ccSHong Zhang 
45999566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46009566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46019566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46029566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46039566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46049566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46059566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46069566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4607d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46089566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46099b8102ccSHong Zhang   }
46109b8102ccSHong Zhang 
4611110bb6e1SHong Zhang   /* numeric phase */
46129566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46139b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46149566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46159b8102ccSHong Zhang     Ii = i + rstart;
46169566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46179566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46189b8102ccSHong Zhang   }
46199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46209566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4622c5d6d63eSBarry Smith }
4623c5d6d63eSBarry Smith 
4624cc1eb50dSBarry Smith static PetscErrorCode MatMergeSeqsToMPIDestroy(void **data)
4625d71ae5a4SJacob Faibussowitsch {
4626cc1eb50dSBarry Smith   MatMergeSeqsToMPI *merge = (MatMergeSeqsToMPI *)*data;
462751a7d1a8SHong Zhang 
462851a7d1a8SHong Zhang   PetscFunctionBegin;
46293ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46309566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46319566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46329566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46339566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46349566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46359566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46369566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46379566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46389566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46399566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46409566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46419566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46439566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
464551a7d1a8SHong Zhang }
464651a7d1a8SHong Zhang 
4647c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4648c6db04a5SJed Brown #include <petscbt.h>
46494ebed01fSBarry Smith 
4650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4651d71ae5a4SJacob Faibussowitsch {
4652ce94432eSBarry Smith   MPI_Comm           comm;
465355d1abb9SHong Zhang   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)seqmat->data;
4654b1d57f15SBarry Smith   PetscMPIInt        size, rank, taga, *len_s;
46556497c311SBarry Smith   PetscInt           N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
46566497c311SBarry Smith   PetscMPIInt        proc, k;
4657b1d57f15SBarry Smith   PetscInt         **buf_ri, **buf_rj;
46586497c311SBarry Smith   PetscInt           anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4659b1d57f15SBarry Smith   PetscInt           nrows, **buf_ri_k, **nextrow, **nextai;
466055d1abb9SHong Zhang   MPI_Request       *s_waits, *r_waits;
466155d1abb9SHong Zhang   MPI_Status        *status;
4662fff043a9SJunchao Zhang   const MatScalar   *aa, *a_a;
4663dd6ea824SBarry Smith   MatScalar        **abuf_r, *ba_i;
4664cc1eb50dSBarry Smith   MatMergeSeqsToMPI *merge;
4665776b82aeSLisandro Dalcin   PetscContainer     container;
466655d1abb9SHong Zhang 
466755d1abb9SHong Zhang   PetscFunctionBegin;
46689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
46699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
46703c2c1871SHong Zhang 
46719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
46729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
467355d1abb9SHong Zhang 
46749566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
467528b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
46769566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
46779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4678fff043a9SJunchao Zhang   aa = a_a;
4679bf0cc555SLisandro Dalcin 
468055d1abb9SHong Zhang   bi     = merge->bi;
468155d1abb9SHong Zhang   bj     = merge->bj;
468255d1abb9SHong Zhang   buf_ri = merge->buf_ri;
468355d1abb9SHong Zhang   buf_rj = merge->buf_rj;
468455d1abb9SHong Zhang 
46859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
46867a2fc3feSBarry Smith   owners = merge->rowmap->range;
468755d1abb9SHong Zhang   len_s  = merge->len_s;
468855d1abb9SHong Zhang 
468955d1abb9SHong Zhang   /* send and recv matrix values */
46909566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
46919566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
469255d1abb9SHong Zhang 
46939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
469455d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
469555d1abb9SHong Zhang     if (!len_s[proc]) continue;
469655d1abb9SHong Zhang     i = owners[proc];
46976497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
469855d1abb9SHong Zhang     k++;
469955d1abb9SHong Zhang   }
470055d1abb9SHong Zhang 
47019566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47029566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
470455d1abb9SHong Zhang 
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
470755d1abb9SHong Zhang 
470855d1abb9SHong Zhang   /* insert mat values of mpimat */
47099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
471155d1abb9SHong Zhang 
471255d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
471355d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4714f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
471555d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4716a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
471755d1abb9SHong Zhang   }
471855d1abb9SHong Zhang 
471955d1abb9SHong Zhang   /* set values of ba */
47207a2fc3feSBarry Smith   m = merge->rowmap->n;
472155d1abb9SHong Zhang   for (i = 0; i < m; i++) {
472255d1abb9SHong Zhang     arow = owners[rank] + i;
472355d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
472455d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47259566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
472655d1abb9SHong Zhang 
472755d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
472855d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
472955d1abb9SHong Zhang     aj     = a->j + ai[arow];
4730fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
473155d1abb9SHong Zhang     nextaj = 0;
473255d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
473355d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
473455d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
473555d1abb9SHong Zhang       }
473655d1abb9SHong Zhang     }
473755d1abb9SHong Zhang 
473855d1abb9SHong Zhang     /* add received vals into ba */
473955d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
474055d1abb9SHong Zhang       /* i-th row */
474155d1abb9SHong Zhang       if (i == *nextrow[k]) {
474255d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4743f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4744f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
474555d1abb9SHong Zhang         nextaj = 0;
474655d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
474755d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
474855d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
474955d1abb9SHong Zhang           }
475055d1abb9SHong Zhang         }
47519371c9d4SSatish Balay         nextrow[k]++;
47529371c9d4SSatish Balay         nextai[k]++;
475355d1abb9SHong Zhang       }
475455d1abb9SHong Zhang     }
47559566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
475655d1abb9SHong Zhang   }
47579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
476055d1abb9SHong Zhang 
47619566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47629566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
47639566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
47649566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
47659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
47663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
476755d1abb9SHong Zhang }
476838f152feSBarry Smith 
4769d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4770d71ae5a4SJacob Faibussowitsch {
477155a3bba9SHong Zhang   Mat                B_mpi;
4772c2234fe3SHong Zhang   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)seqmat->data;
4773b1d57f15SBarry Smith   PetscMPIInt        size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4774b1d57f15SBarry Smith   PetscInt         **buf_rj, **buf_ri, **buf_ri_k;
4775d0f46423SBarry Smith   PetscInt           M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
47766497c311SBarry Smith   PetscInt           len, *dnz, *onz, bs, cbs;
4777c599c493SJunchao Zhang   PetscInt           k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4778b1d57f15SBarry Smith   PetscInt           nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
477955d1abb9SHong Zhang   MPI_Request       *si_waits, *sj_waits, *ri_waits, *rj_waits;
478058cb9c82SHong Zhang   MPI_Status        *status;
47810298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
4782be0fcf8dSHong Zhang   PetscBT            lnkbt;
4783cc1eb50dSBarry Smith   MatMergeSeqsToMPI *merge;
4784776b82aeSLisandro Dalcin   PetscContainer     container;
478502c68681SHong Zhang 
4786e5f2cdd8SHong Zhang   PetscFunctionBegin;
47879566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
47883c2c1871SHong Zhang 
478938f152feSBarry Smith   /* make sure it is a PETSc comm */
47909566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
47919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
479355d1abb9SHong Zhang 
47949566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
47959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4796e5f2cdd8SHong Zhang 
47976abd8857SHong Zhang   /* determine row ownership */
47989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
47999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
480555d1abb9SHong Zhang 
48067a2fc3feSBarry Smith   m      = merge->rowmap->n;
48077a2fc3feSBarry Smith   owners = merge->rowmap->range;
48086abd8857SHong Zhang 
48096abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48103e06a4e6SHong Zhang   len_s = merge->len_s;
481151a7d1a8SHong Zhang 
48122257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4813c2234fe3SHong Zhang   merge->nsend = 0;
48146497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48152257cef7SHong Zhang     len_si[proc] = 0;
48163e06a4e6SHong Zhang     if (proc == rank) {
48176abd8857SHong Zhang       len_s[proc] = 0;
48183e06a4e6SHong Zhang     } else {
48196497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48206497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48213e06a4e6SHong Zhang     }
48223e06a4e6SHong Zhang     if (len_s[proc]) {
4823c2234fe3SHong Zhang       merge->nsend++;
48242257cef7SHong Zhang       nrows = 0;
48252257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48262257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48272257cef7SHong Zhang       }
48286497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48292257cef7SHong Zhang       len += len_si[proc];
4830409913e3SHong Zhang     }
483158cb9c82SHong Zhang   }
4832409913e3SHong Zhang 
48332257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48349566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48359566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4836671beff6SHong Zhang 
48373e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48389566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48399566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
484002c68681SHong Zhang 
48413e06a4e6SHong Zhang   /* post the Isend of j-structure */
48429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48433e06a4e6SHong Zhang 
48446497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4845409913e3SHong Zhang     if (!len_s[proc]) continue;
484602c68681SHong Zhang     i = owners[proc];
48476497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
484851a7d1a8SHong Zhang     k++;
484951a7d1a8SHong Zhang   }
485051a7d1a8SHong Zhang 
48513e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48529566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48539566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
485402c68681SHong Zhang 
485502c68681SHong Zhang   /* send and recv i-structure */
48569566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48579566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
485802c68681SHong Zhang 
48599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48603e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48616497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
486202c68681SHong Zhang     if (!len_s[proc]) continue;
48633e06a4e6SHong Zhang     /* form outgoing message for i-structure:
48643e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
48653e06a4e6SHong Zhang                [1:nrows]:           row index (global)
48663e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
48673e06a4e6SHong Zhang     */
48682257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
48693e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
48703e06a4e6SHong Zhang     buf_si[0]   = nrows;
48713e06a4e6SHong Zhang     buf_si_i[0] = 0;
48723e06a4e6SHong Zhang     nrows       = 0;
48733e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
48743e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
48753e06a4e6SHong Zhang       if (anzi) {
48763e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
48773e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
48783e06a4e6SHong Zhang         nrows++;
48793e06a4e6SHong Zhang       }
48803e06a4e6SHong Zhang     }
48816497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
488202c68681SHong Zhang     k++;
48832257cef7SHong Zhang     buf_si += len_si[proc];
488402c68681SHong Zhang   }
48852257cef7SHong Zhang 
48869566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
48879566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
488802c68681SHong Zhang 
48899566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
489048a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
48913e06a4e6SHong Zhang 
48929566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
48939566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
48949566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
48959566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
48969566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
48979566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
48989566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
489958cb9c82SHong Zhang 
4900bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
490158cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
490358cb9c82SHong Zhang   bi[0] = 0;
490458cb9c82SHong Zhang 
4905be0fcf8dSHong Zhang   /* create and initialize a linked list */
4906be0fcf8dSHong Zhang   nlnk = N + 1;
49079566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
490858cb9c82SHong Zhang 
4909bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4910bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49119566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49122205254eSKarl Rupp 
491358cb9c82SHong Zhang   current_space = free_space;
491458cb9c82SHong Zhang 
4915bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49171d79065fSBarry Smith 
49183e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49192257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49203e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49213e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4922a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49233e06a4e6SHong Zhang   }
49242257cef7SHong Zhang 
4925d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4926bcc1bcd5SHong Zhang   len = 0;
492758cb9c82SHong Zhang   for (i = 0; i < m; i++) {
492858cb9c82SHong Zhang     bnzi = 0;
492958cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
493058cb9c82SHong Zhang     arow = owners[rank] + i;
493158cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
493258cb9c82SHong Zhang     aj   = a->j + ai[arow];
49339566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
493458cb9c82SHong Zhang     bnzi += nlnk;
493558cb9c82SHong Zhang     /* add received col data into lnk */
493651a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
493755d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49383e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49393e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49409566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49413e06a4e6SHong Zhang         bnzi += nlnk;
49429371c9d4SSatish Balay         nextrow[k]++;
49439371c9d4SSatish Balay         nextai[k]++;
49443e06a4e6SHong Zhang       }
494558cb9c82SHong Zhang     }
4946bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
494758cb9c82SHong Zhang 
494858cb9c82SHong Zhang     /* if free space is not available, make more free space */
494948a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
495058cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49519566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49529566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4953bcc1bcd5SHong Zhang 
495458cb9c82SHong Zhang     current_space->array += bnzi;
495558cb9c82SHong Zhang     current_space->local_used += bnzi;
495658cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
495758cb9c82SHong Zhang 
495858cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
495958cb9c82SHong Zhang   }
4960bcc1bcd5SHong Zhang 
49619566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4962bcc1bcd5SHong Zhang 
496384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(bi[m], &bj));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
49659566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
4966409913e3SHong Zhang 
4967bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
49689566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
49699566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
497054b84b50SHong Zhang   if (n == PETSC_DECIDE) {
49719566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
497254b84b50SHong Zhang   } else {
49739566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
497454b84b50SHong Zhang   }
49759566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
49769566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
49779566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
4978d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
49799566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
498058cb9c82SHong Zhang 
498190431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
49826abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
4983affca5deSHong Zhang   merge->bi        = bi;
4984affca5deSHong Zhang   merge->bj        = bj;
498502c68681SHong Zhang   merge->buf_ri    = buf_ri;
498602c68681SHong Zhang   merge->buf_rj    = buf_rj;
49870298fd71SBarry Smith   merge->coi       = NULL;
49880298fd71SBarry Smith   merge->coj       = NULL;
49890298fd71SBarry Smith   merge->owners_co = NULL;
4990affca5deSHong Zhang 
49919566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
4992bf0cc555SLisandro Dalcin 
4993affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
49949566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
49959566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
4996cc1eb50dSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatMergeSeqsToMPIDestroy));
49979566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
49989566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
4999affca5deSHong Zhang   *mpimat = B_mpi;
500038f152feSBarry Smith 
50019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5003e5f2cdd8SHong Zhang }
500425616d81SHong Zhang 
5005cc4c1da9SBarry Smith /*@
500611a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5007d4036a1aSHong Zhang   matrices from each processor
5008d4036a1aSHong Zhang 
5009d083f849SBarry Smith   Collective
5010d4036a1aSHong Zhang 
5011d4036a1aSHong Zhang   Input Parameters:
5012d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5013d4036a1aSHong Zhang . seqmat - the input sequential matrices
501411a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
501511a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
501611a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5017d4036a1aSHong Zhang 
5018d4036a1aSHong Zhang   Output Parameter:
5019d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5020d4036a1aSHong Zhang 
5021d4036a1aSHong Zhang   Level: advanced
5022d4036a1aSHong Zhang 
502311a5261eSBarry Smith   Note:
5024d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
50257da3f0dfSBarry Smith   The input seqmat is included into the container `MatMergeSeqsToMPIDestroy`, and will be
5026b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50272ef1f0ffSBarry Smith 
50281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5029d4036a1aSHong Zhang @*/
5030d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5031d71ae5a4SJacob Faibussowitsch {
50327e63b356SHong Zhang   PetscMPIInt size;
503355d1abb9SHong Zhang 
503455d1abb9SHong Zhang   PetscFunctionBegin;
50359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50367e63b356SHong Zhang   if (size == 1) {
50379566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50387e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50399566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50407e63b356SHong Zhang     } else {
50419566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50427e63b356SHong Zhang     }
50439566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50443ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50457e63b356SHong Zhang   }
50469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
504748a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50489566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50499566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
505155d1abb9SHong Zhang }
50524ebed01fSBarry Smith 
5053bc08b0f1SBarry Smith /*@
50542920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50558a9c020eSBarry Smith 
50568a9c020eSBarry Smith   Not Collective
50578a9c020eSBarry Smith 
50582fe279fdSBarry Smith   Input Parameter:
505920f4b53cSBarry Smith . A - the matrix
50608a9c020eSBarry Smith 
50618a9c020eSBarry Smith   Output Parameter:
50628a9c020eSBarry Smith . A_loc - the local sequential matrix generated
50638a9c020eSBarry Smith 
50648a9c020eSBarry Smith   Level: developer
50658a9c020eSBarry Smith 
50668a9c020eSBarry Smith   Notes:
50672920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
50682920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
50692920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
50702920cce0SJacob Faibussowitsch 
507111a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
50728a9c020eSBarry Smith 
50732920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
50742920cce0SJacob Faibussowitsch 
507511a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
50768a9c020eSBarry Smith 
50771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
50788a9c020eSBarry Smith @*/
5079d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5080d71ae5a4SJacob Faibussowitsch {
50818a9c020eSBarry Smith   PetscBool mpi;
50828a9c020eSBarry Smith 
50838a9c020eSBarry Smith   PetscFunctionBegin;
50848a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
50858a9c020eSBarry Smith   if (mpi) {
50868a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
50878a9c020eSBarry Smith   } else {
50888a9c020eSBarry Smith     *A_loc = A;
50898a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
50908a9c020eSBarry Smith   }
50913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50928a9c020eSBarry Smith }
50938a9c020eSBarry Smith 
50948a9c020eSBarry Smith /*@
50952920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
509625616d81SHong Zhang 
509732fba14fSHong Zhang   Not Collective
509825616d81SHong Zhang 
509925616d81SHong Zhang   Input Parameters:
510025616d81SHong Zhang + A     - the matrix
510111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
510225616d81SHong Zhang 
510325616d81SHong Zhang   Output Parameter:
510425616d81SHong Zhang . A_loc - the local sequential matrix generated
510525616d81SHong Zhang 
510625616d81SHong Zhang   Level: developer
510725616d81SHong Zhang 
510877c65a98SStefano Zampini   Notes:
51092920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51102920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51112920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51122920cce0SJacob Faibussowitsch 
511311a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51148a9c020eSBarry Smith 
51152920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51162920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51172920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51182920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
511977c65a98SStefano Zampini 
51201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
512125616d81SHong Zhang @*/
5122d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5123d71ae5a4SJacob Faibussowitsch {
512401b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5125b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5126b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5127ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5128ce496241SStefano Zampini   PetscScalar       *ca, *cam;
512977c65a98SStefano Zampini   PetscMPIInt        size;
5130d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51315a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51328661ff28SBarry Smith   PetscBool          match;
513325616d81SHong Zhang 
513425616d81SHong Zhang   PetscFunctionBegin;
51359566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
513628b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
513877c65a98SStefano Zampini   if (size == 1) {
513977c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51409566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
514177c65a98SStefano Zampini       *A_loc = mpimat->A;
514277c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51439566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
514477c65a98SStefano Zampini     }
51453ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
514677c65a98SStefano Zampini   }
514770a9ba44SHong Zhang 
51489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5149f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5150f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
51519371c9d4SSatish Balay   ai = a->i;
51529371c9d4SSatish Balay   aj = a->j;
51539371c9d4SSatish Balay   bi = b->i;
51549371c9d4SSatish Balay   bj = b->j;
51559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5157ce496241SStefano Zampini   aa = aav;
5158ce496241SStefano Zampini   ba = bav;
515901b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5161dea91ad1SHong Zhang     ci[0] = 0;
5162ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
51639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
51649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5165dea91ad1SHong Zhang     k = 0;
516601b7ae99SHong Zhang     for (i = 0; i < am; i++) {
51675a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
51685a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
516901b7ae99SHong Zhang       /* off-diagonal portion of A */
51705a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
51715a7d977cSHong Zhang         col = cmap[*bj];
51725a7d977cSHong Zhang         if (col >= cstart) break;
51739371c9d4SSatish Balay         cj[k] = col;
51749371c9d4SSatish Balay         bj++;
51755a7d977cSHong Zhang         ca[k++] = *ba++;
51765a7d977cSHong Zhang       }
51775a7d977cSHong Zhang       /* diagonal portion of A */
51785a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
51795a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
51805a7d977cSHong Zhang         ca[k++] = *aa++;
51815a7d977cSHong Zhang       }
51825a7d977cSHong Zhang       /* off-diagonal portion of A */
51835a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
51845a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
51855a7d977cSHong Zhang         ca[k++] = *ba++;
51865a7d977cSHong Zhang       }
518725616d81SHong Zhang     }
5188dea91ad1SHong Zhang     /* put together the new matrix */
51899566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5190dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5191dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5192dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5193e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5194e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5195dea91ad1SHong Zhang     mat->nonew   = 0;
51965a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
51975a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5198fff043a9SJunchao Zhang     ci  = mat->i;
5199fff043a9SJunchao Zhang     cj  = mat->j;
52009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52015a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52025a7d977cSHong Zhang       /* off-diagonal portion of A */
52035a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52045a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52055a7d977cSHong Zhang         col = cmap[*bj];
52065a7d977cSHong Zhang         if (col >= cstart) break;
52079371c9d4SSatish Balay         *cam++ = *ba++;
52089371c9d4SSatish Balay         bj++;
52095a7d977cSHong Zhang       }
52105a7d977cSHong Zhang       /* diagonal portion of A */
5211ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5212a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52135a7d977cSHong Zhang       /* off-diagonal portion of A */
5214f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52159371c9d4SSatish Balay         *cam++ = *ba++;
52169371c9d4SSatish Balay         bj++;
5217f33d1a9aSHong Zhang       }
52185a7d977cSHong Zhang     }
52199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
522098921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
522525616d81SHong Zhang }
522625616d81SHong Zhang 
5227ed502f03SStefano Zampini /*@
522811a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52294cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5230ed502f03SStefano Zampini 
5231ed502f03SStefano Zampini   Not Collective
5232ed502f03SStefano Zampini 
5233ed502f03SStefano Zampini   Input Parameters:
5234ed502f03SStefano Zampini + A     - the matrix
523511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5236ed502f03SStefano Zampini 
5237d8d19677SJose E. Roman   Output Parameters:
52382ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5239ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5240ed502f03SStefano Zampini 
5241ed502f03SStefano Zampini   Level: developer
5242ed502f03SStefano Zampini 
524311a5261eSBarry Smith   Note:
52442ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52454cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5246ed502f03SStefano Zampini 
52471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5248ed502f03SStefano Zampini @*/
5249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5250d71ae5a4SJacob Faibussowitsch {
5251ed502f03SStefano Zampini   Mat             Ao, Ad;
5252ed502f03SStefano Zampini   const PetscInt *cmap;
5253ed502f03SStefano Zampini   PetscMPIInt     size;
5254ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5255ed502f03SStefano Zampini 
5256ed502f03SStefano Zampini   PetscFunctionBegin;
52579566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5259ed502f03SStefano Zampini   if (size == 1) {
5260ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52619566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5262ed502f03SStefano Zampini       *A_loc = Ad;
5263ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52649566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5265ed502f03SStefano Zampini     }
52669566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
52673ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5268ed502f03SStefano Zampini   }
52699566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
52709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5271ed502f03SStefano Zampini   if (f) {
52729566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5273ed502f03SStefano Zampini   } else {
5274ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5275ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5276ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5277ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5278ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5279ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5280ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5281ed502f03SStefano Zampini     PetscScalar       *ca;
5282ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5283ed502f03SStefano Zampini 
52849566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
52859566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
52869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
52879566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5288ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5289ed502f03SStefano Zampini       PetscInt k;
52909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
52919566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
52929566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5293ed502f03SStefano Zampini       ci[0] = 0;
5294ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5295ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5296ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5297ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5298ed502f03SStefano Zampini         /* diagonal portion of A */
5299ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5300ed502f03SStefano Zampini           cj[k] = *aj++;
5301ed502f03SStefano Zampini           ca[k] = *aa++;
5302ed502f03SStefano Zampini         }
5303ed502f03SStefano Zampini         /* off-diagonal portion of A */
5304ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5305ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5306ed502f03SStefano Zampini           ca[k] = *ba++;
5307ed502f03SStefano Zampini         }
5308ed502f03SStefano Zampini       }
5309ed502f03SStefano Zampini       /* put together the new matrix */
53109566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5311ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5312ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5313ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5314ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5315ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5316ed502f03SStefano Zampini       c->nonew   = 0;
53179566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5318ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53199566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5320ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5321ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5322ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5323ed502f03SStefano Zampini         /* diagonal portion of A */
5324ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5325ed502f03SStefano Zampini         /* off-diagonal portion of A */
5326ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5327ed502f03SStefano Zampini       }
53289566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
532998921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53309566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53319566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5332ed502f03SStefano Zampini     if (glob) {
5333ed502f03SStefano Zampini       PetscInt cst, *gidx;
5334ed502f03SStefano Zampini 
53359566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5337ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5338ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53399566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5340ed502f03SStefano Zampini     }
5341ed502f03SStefano Zampini   }
53429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5344ed502f03SStefano Zampini }
5345ed502f03SStefano Zampini 
534632fba14fSHong Zhang /*@C
534711a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
534832fba14fSHong Zhang 
534932fba14fSHong Zhang   Not Collective
535032fba14fSHong Zhang 
535132fba14fSHong Zhang   Input Parameters:
535232fba14fSHong Zhang + A     - the matrix
535311a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
535420f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
535520f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
535632fba14fSHong Zhang 
535732fba14fSHong Zhang   Output Parameter:
535832fba14fSHong Zhang . A_loc - the local sequential matrix generated
535932fba14fSHong Zhang 
536032fba14fSHong Zhang   Level: developer
536132fba14fSHong Zhang 
53621cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
536332fba14fSHong Zhang @*/
5364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5365d71ae5a4SJacob Faibussowitsch {
536632fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
536732fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
536832fba14fSHong Zhang   IS          isrowa, iscola;
536932fba14fSHong Zhang   Mat        *aloc;
53704a2b5492SBarry Smith   PetscBool   match;
537132fba14fSHong Zhang 
537232fba14fSHong Zhang   PetscFunctionBegin;
53739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
537428b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
53759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
537632fba14fSHong Zhang   if (!row) {
53779371c9d4SSatish Balay     start = A->rmap->rstart;
53789371c9d4SSatish Balay     end   = A->rmap->rend;
53799566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
538032fba14fSHong Zhang   } else {
538132fba14fSHong Zhang     isrowa = *row;
538232fba14fSHong Zhang   }
538332fba14fSHong Zhang   if (!col) {
5384d0f46423SBarry Smith     start = A->cmap->rstart;
538532fba14fSHong Zhang     cmap  = a->garray;
5386d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5387d0f46423SBarry Smith     nzB   = a->B->cmap->n;
53889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
538932fba14fSHong Zhang     ncols = 0;
539032fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
539132fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
539232fba14fSHong Zhang       else break;
539332fba14fSHong Zhang     }
539432fba14fSHong Zhang     imark = i;
539532fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
539632fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
53979566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
539832fba14fSHong Zhang   } else {
539932fba14fSHong Zhang     iscola = *col;
540032fba14fSHong Zhang   }
540132fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
540332fba14fSHong Zhang     aloc[0] = *A_loc;
540432fba14fSHong Zhang   }
54059566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5406109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54079566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5408109e0772SStefano Zampini   }
540932fba14fSHong Zhang   *A_loc = aloc[0];
54109566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
541148a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
541248a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
541532fba14fSHong Zhang }
541632fba14fSHong Zhang 
54175c65b9ecSFande Kong /*
54185c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54195c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54205c65b9ecSFande Kong  * on a global size.
54215c65b9ecSFande Kong  * */
5422ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5423d71ae5a4SJacob Faibussowitsch {
54245c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5425f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5426131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5427131c27b5Sprj-   PetscMPIInt            owner;
54285c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54295c65b9ecSFande Kong   const PetscInt        *lrowindices;
54305c65b9ecSFande Kong   PetscSF                sf, osf;
54315c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54325c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54335c65b9ecSFande Kong   MPI_Comm               comm;
54345c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5435fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54365c65b9ecSFande Kong 
54375c65b9ecSFande Kong   PetscFunctionBegin;
54389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54395c65b9ecSFande Kong   /* plocalsize is the number of roots
54405c65b9ecSFande Kong    * nrows is the number of leaves
54415c65b9ecSFande Kong    * */
54429566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54439566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54459566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54465c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54475c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54485c65b9ecSFande Kong      * The row could be local or remote
54495c65b9ecSFande Kong      * */
545034bcad68SFande Kong     owner = 0;
545134bcad68SFande Kong     lidx  = 0;
54529566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54535c65b9ecSFande Kong     iremote[i].index = lidx;
54545c65b9ecSFande Kong     iremote[i].rank  = owner;
54555c65b9ecSFande Kong   }
54565c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54579566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5458f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54595c65b9ecSFande Kong    * offsets
54605c65b9ecSFande Kong    * */
54619566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54629566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
54639566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5464bc8e477aSFande Kong 
54659566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
54669566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
54679566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
54685c65b9ecSFande Kong   roffsets[0] = 0;
54695c65b9ecSFande Kong   roffsets[1] = 0;
54705c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
54714cf0e950SBarry Smith     /* diagonal */
54725c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
54734cf0e950SBarry Smith     /* off-diagonal */
54745c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
54755c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
54765c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
54775c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
54785c65b9ecSFande Kong   }
54799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
54809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
54815c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
54829566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54839566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
54849566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54859566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
54869566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
54879566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
54889566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
54895c65b9ecSFande Kong   dntotalcols = 0;
54905c65b9ecSFande Kong   ontotalcols = 0;
5491bc8e477aSFande Kong   ncol        = 0;
54925c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54935c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5494bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
54954cf0e950SBarry Smith     /* diagonal */
54965c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
54974cf0e950SBarry Smith     /* off-diagonal */
54985c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
54995c65b9ecSFande Kong   }
55005c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55015c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55025c65b9ecSFande Kong    * */
55039566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55049566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55059566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55065c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55074cf0e950SBarry Smith   /* diagonal */
55089566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55094cf0e950SBarry Smith   /* off-diagonal */
55109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55114cf0e950SBarry Smith   /* diagonal */
55129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55134cf0e950SBarry Smith   /* off-diagonal */
55149566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55155c65b9ecSFande Kong   dntotalcols = 0;
55165c65b9ecSFande Kong   ontotalcols = 0;
55175c65b9ecSFande Kong   ntotalcols  = 0;
55185c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
551934bcad68SFande Kong     owner = 0;
55209566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55215c65b9ecSFande Kong     /* Set iremote for diag matrix */
55225c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55235c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55245c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55255c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55265c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55275c65b9ecSFande Kong     }
55284cf0e950SBarry Smith     /* off-diagonal */
55295c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55305c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55315c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55325c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55335c65b9ecSFande Kong     }
55345c65b9ecSFande Kong   }
55359566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55369566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55379566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55389566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55395c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55405c65b9ecSFande Kong    * Diag matrix
55415c65b9ecSFande Kong    * */
55429566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55439566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55449566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55455c65b9ecSFande Kong 
55469566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55474cf0e950SBarry Smith   /* off-diagonal */
55489566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55509566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55534cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55549566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55569566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55575c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55585c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55599566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55605c65b9ecSFande Kong   /* We want P_oth store global indices */
55619566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55625c65b9ecSFande Kong   /* Use memory scalable approach */
55639566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
55649566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
55659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55675c65b9ecSFande Kong   /* Convert back to local indices */
55685c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
55699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55705c65b9ecSFande Kong   nout = 0;
55719566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
557208401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
55739566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
55745c65b9ecSFande Kong   /* Exchange values */
55759566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55769566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
55789566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
55795c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
55805c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
55819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
55829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
55835c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
55849566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
55859566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
55869566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55879566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
55883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55895c65b9ecSFande Kong }
55905c65b9ecSFande Kong 
55915c65b9ecSFande Kong /*
55925c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
55935c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
55945c65b9ecSFande Kong  * */
5595d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5596d71ae5a4SJacob Faibussowitsch {
55975c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5598bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5599bc8e477aSFande Kong   IS          rows, map;
5600bc8e477aSFande Kong   PetscHMapI  hamp;
5601bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56025c65b9ecSFande Kong   MPI_Comm    comm;
56035c65b9ecSFande Kong   PetscSF     sf, osf;
5604bc8e477aSFande Kong   PetscBool   has;
56055c65b9ecSFande Kong 
56065c65b9ecSFande Kong   PetscFunctionBegin;
56079566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56095c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56105c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56115c65b9ecSFande Kong    * */
56125c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56135c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5614eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56159566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5616bc8e477aSFande Kong     count = 0;
5617bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5618bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5619bc8e477aSFande Kong       key = a->garray[i] / dof;
56209566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5621bc8e477aSFande Kong       if (!has) {
5622bc8e477aSFande Kong         mapping[i] = count;
56239566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5624bc8e477aSFande Kong       } else {
5625bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5626bc8e477aSFande Kong         mapping[i] = count - 1;
56275c65b9ecSFande Kong       }
5628bc8e477aSFande Kong     }
56299566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56309566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5631eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56329566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56335c65b9ecSFande Kong     off = 0;
56349566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56359566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56369566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56379566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56385c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56399566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56409566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56419566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56445c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56455c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
564635cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5647fff043a9SJunchao Zhang      */
5648fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5649fff043a9SJunchao Zhang 
56509566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56519566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
565208401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56535c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56545c65b9ecSFande Kong     /* Update values in place */
56559566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56569566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56579566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56589566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56599566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56609566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56619566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56629566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56636718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
56649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
56653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56665c65b9ecSFande Kong }
56675c65b9ecSFande Kong 
566825616d81SHong Zhang /*@C
566920f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
567025616d81SHong Zhang 
5671c3339decSBarry Smith   Collective
567225616d81SHong Zhang 
567325616d81SHong Zhang   Input Parameters:
567411a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
567511a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
567611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
567725616d81SHong Zhang 
5678f1a722f8SMatthew G. Knepley   Output Parameters:
567927430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
568027430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5681f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
568225616d81SHong Zhang 
568325616d81SHong Zhang   Level: developer
568425616d81SHong Zhang 
568520f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
568625616d81SHong Zhang @*/
5687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5688d71ae5a4SJacob Faibussowitsch {
5689899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5690b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
569125616d81SHong Zhang   IS          isrowb, iscolb;
56920298fd71SBarry Smith   Mat        *bseq = NULL;
569325616d81SHong Zhang 
569425616d81SHong Zhang   PetscFunctionBegin;
569520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
569620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
56979566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
569825616d81SHong Zhang 
569925616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5700d0f46423SBarry Smith     start = A->cmap->rstart;
570125616d81SHong Zhang     cmap  = a->garray;
5702d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5703d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
570525616d81SHong Zhang     ncols = 0;
57060390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
570725616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
570825616d81SHong Zhang       else break;
570925616d81SHong Zhang     }
571025616d81SHong Zhang     imark = i;
57110390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57120390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57139566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57149566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
571525616d81SHong Zhang   } else {
571608401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57179371c9d4SSatish Balay     isrowb = *rowb;
57189371c9d4SSatish Balay     iscolb = *colb;
57199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
572025616d81SHong Zhang     bseq[0] = *B_seq;
572125616d81SHong Zhang   }
57229566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
572325616d81SHong Zhang   *B_seq = bseq[0];
57249566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
572525616d81SHong Zhang   if (!rowb) {
57269566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
572725616d81SHong Zhang   } else {
572825616d81SHong Zhang     *rowb = isrowb;
572925616d81SHong Zhang   }
573025616d81SHong Zhang   if (!colb) {
57319566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
573225616d81SHong Zhang   } else {
573325616d81SHong Zhang     *colb = iscolb;
573425616d81SHong Zhang   }
57359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
573725616d81SHong Zhang }
5738429d309bSHong Zhang 
5739f8487c73SHong Zhang /*
574027430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
574101b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5742429d309bSHong Zhang 
5743c3339decSBarry Smith     Collective
5744429d309bSHong Zhang 
5745429d309bSHong Zhang    Input Parameters:
574627430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
574727430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5748429d309bSHong Zhang 
5749429d309bSHong Zhang    Output Parameter:
57500298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57510298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57520298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5753598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5754429d309bSHong Zhang 
575511a5261eSBarry Smith     Developer Note:
575611a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57576eb45d04SBarry Smith      for this matrix. This is not desirable..
57586eb45d04SBarry Smith 
5759429d309bSHong Zhang     Level: developer
5760429d309bSHong Zhang 
5761f8487c73SHong Zhang */
57626497c311SBarry Smith 
5763d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5764d71ae5a4SJacob Faibussowitsch {
5765899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
57664b8d542aSHong Zhang   VecScatter         ctx;
5767ce94432eSBarry Smith   MPI_Comm           comm;
57683515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
57696497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
57703515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5771277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
57726497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5773277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5774ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5775ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5776429d309bSHong Zhang 
5777429d309bSHong Zhang   PetscFunctionBegin;
57789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
57799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5780a7c7454dSHong Zhang 
578120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
578220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
57849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5785a6b2eed2SHong Zhang 
5786ec07b8f8SHong Zhang   if (size == 1) {
5787ec07b8f8SHong Zhang     startsj_s = NULL;
5788ec07b8f8SHong Zhang     bufa_ptr  = NULL;
578952f7967eSHong Zhang     *B_oth    = NULL;
57903ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5791ec07b8f8SHong Zhang   }
5792ec07b8f8SHong Zhang 
5793fa83eaafSHong Zhang   ctx = a->Mvctx;
57944b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
57954b8d542aSHong Zhang 
57969566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
57973515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
57989566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
57999566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5801ddea5d60SJunchao Zhang   rwaits = reqs;
58028e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5803429d309bSHong Zhang 
5804b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5805429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5806a6b2eed2SHong Zhang     /* i-array */
5807a6b2eed2SHong Zhang     /*  post receives */
58089566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5809a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
581074268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5811e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58126497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5813429d309bSHong Zhang     }
5814a6b2eed2SHong Zhang 
5815a6b2eed2SHong Zhang     /* pack the outgoing message */
58169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58172205254eSKarl Rupp 
58182205254eSKarl Rupp     sstartsj[0] = 0;
58192205254eSKarl Rupp     rstartsj[0] = 0;
5820a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58213515ee7fSJunchao Zhang     if (nsends) {
58223515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58243515ee7fSJunchao Zhang     }
5825a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58263515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5827e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
582887025532SHong Zhang       for (j = 0; j < nrows; j++) {
5829d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5830e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58319566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58322205254eSKarl Rupp 
5833e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58342205254eSKarl Rupp 
5835e42f35eeSHong Zhang           len += ncols;
58369566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5837e42f35eeSHong Zhang         }
5838a6b2eed2SHong Zhang         k++;
5839429d309bSHong Zhang       }
58406497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58412205254eSKarl Rupp 
5842dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5843429d309bSHong Zhang     }
584487025532SHong Zhang     /* recvs and sends of i-array are completed */
58459566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58469566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5847e42f35eeSHong Zhang 
5848a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
584984648c2dSPierre Jolivet     PetscCall(PetscMalloc1(len, &bufj));
585084648c2dSPierre Jolivet     PetscCall(PetscMalloc1(len, &bufa));
5851a6b2eed2SHong Zhang 
585287025532SHong Zhang     /* create i-array of B_oth */
585384648c2dSPierre Jolivet     PetscCall(PetscMalloc1(aBn + 1, &b_othi));
58542205254eSKarl Rupp 
585587025532SHong Zhang     b_othi[0] = 0;
5856a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5857a6b2eed2SHong Zhang     k         = 0;
5858a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58593515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58603515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
586187025532SHong Zhang       for (j = 0; j < nrows; j++) {
586287025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58639566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5864f91af8c7SBarry Smith         k++;
5865a6b2eed2SHong Zhang       }
5866dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5867a6b2eed2SHong Zhang     }
58689566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5869a6b2eed2SHong Zhang 
58706aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
587184648c2dSPierre Jolivet     PetscCall(PetscMalloc1(b_othi[aBn], &b_othj));
587284648c2dSPierre Jolivet     PetscCall(PetscMalloc1(b_othi[aBn], &b_otha));
5873a6b2eed2SHong Zhang 
587487025532SHong Zhang     /* j-array */
5875a6b2eed2SHong Zhang     /*  post receives of j-array */
5876a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587787025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
587884648c2dSPierre Jolivet       PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_othj, rstartsj[i]), nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5879a6b2eed2SHong Zhang     }
5880e42f35eeSHong Zhang 
5881e42f35eeSHong Zhang     /* pack the outgoing message j-array */
58823515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5883a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5884e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
588584648c2dSPierre Jolivet       bufJ  = PetscSafePointerPlusOffset(bufj, sstartsj[i]);
588687025532SHong Zhang       for (j = 0; j < nrows; j++) {
5887d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5888e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
58899566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5890ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
58919566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5892e42f35eeSHong Zhang         }
589387025532SHong Zhang       }
589484648c2dSPierre Jolivet       PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufj, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
589587025532SHong Zhang     }
589687025532SHong Zhang 
589787025532SHong Zhang     /* recvs and sends of j-array are completed */
58989566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
589987025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5900b7f45c76SHong Zhang     sstartsj = *startsj_s;
59011d79065fSBarry Smith     rstartsj = *startsj_r;
590287025532SHong Zhang     bufa     = *bufa_ptr;
59039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5904ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
590587025532SHong Zhang 
590687025532SHong Zhang   /* a-array */
590787025532SHong Zhang   /*  post receives of a-array */
590887025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
590987025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
591084648c2dSPierre Jolivet     PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_otha, rstartsj[i]), nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
591187025532SHong Zhang   }
5912e42f35eeSHong Zhang 
5913e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59143515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
591587025532SHong Zhang   for (i = 0; i < nsends; i++) {
5916e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
591784648c2dSPierre Jolivet     bufA  = PetscSafePointerPlusOffset(bufa, sstartsj[i]);
591887025532SHong Zhang     for (j = 0; j < nrows; j++) {
5919d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5920e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59219566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5922ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59239566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5924e42f35eeSHong Zhang       }
5925a6b2eed2SHong Zhang     }
592684648c2dSPierre Jolivet     PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufa, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5927a6b2eed2SHong Zhang   }
592887025532SHong Zhang   /* recvs and sends of a-array are completed */
59299566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59309566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5931a6b2eed2SHong Zhang 
593287025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5933dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
5934dd460d27SBarry Smith 
5935a6b2eed2SHong Zhang     /* put together the new matrix */
59369566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5937a6b2eed2SHong Zhang 
5938a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5939a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
594087025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5941e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5942e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
594387025532SHong Zhang     b_oth->nonew   = 0;
5944a6b2eed2SHong Zhang 
59459566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5946b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59479566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59489566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5949dea91ad1SHong Zhang     } else {
5950b7f45c76SHong Zhang       *startsj_s = sstartsj;
59511d79065fSBarry Smith       *startsj_r = rstartsj;
595287025532SHong Zhang       *bufa_ptr  = bufa;
595387025532SHong Zhang     }
5954fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59559566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5956dea91ad1SHong Zhang   }
59573515ee7fSJunchao Zhang 
59589566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59599566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5962429d309bSHong Zhang }
5963ccd8e176SBarry Smith 
5964cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
5965cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
5966ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
59679779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
5968a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
5969191b95cbSRichard Tran Mills #endif
5970ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
5971cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
59725d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5973cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
59745d7652ecSHong Zhang #endif
5975d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5976d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
5977d24d4204SJose E. Roman #endif
597863c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
597963c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
598063c07aadSStefano Zampini #endif
59813338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
59823338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
59833338378cSStefano Zampini #endif
5984d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
5985d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
5986d5e393b6SSuyash Tandon #endif
59873d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
59883d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
59893d0639e7SStefano Zampini #endif
5990d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
59914222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
59924222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
599317667f90SBarry Smith 
5994fc4dec0aSBarry Smith /*
5995fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
5996fc4dec0aSBarry Smith 
5997fc4dec0aSBarry Smith                n                       p                          p
59982da392ccSBarry Smith         [             ]       [             ]         [                 ]
59992da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60002da392ccSBarry Smith         [             ]       [             ]         [                 ]
6001fc4dec0aSBarry Smith 
6002fc4dec0aSBarry Smith */
6003d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6004d71ae5a4SJacob Faibussowitsch {
6005fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6006fc4dec0aSBarry Smith 
6007fc4dec0aSBarry Smith   PetscFunctionBegin;
60089566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60099566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6010fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60119566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60129566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60137fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60149566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6017fc4dec0aSBarry Smith }
6018fc4dec0aSBarry Smith 
6019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6020d71ae5a4SJacob Faibussowitsch {
60216718818eSStefano Zampini   PetscBool cisdense;
6022fc4dec0aSBarry Smith 
6023fc4dec0aSBarry Smith   PetscFunctionBegin;
602408401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60259566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60269566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6027d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
602848a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60299566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6030f75ecaa4SHong Zhang 
60314222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6033fc4dec0aSBarry Smith }
6034fc4dec0aSBarry Smith 
6035d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6036d71ae5a4SJacob Faibussowitsch {
60374222ddf1SHong Zhang   Mat_Product *product = C->product;
60384222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6039fc4dec0aSBarry Smith 
6040fc4dec0aSBarry Smith   PetscFunctionBegin;
604120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
604220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60434222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60444222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6046fc4dec0aSBarry Smith }
6047fc4dec0aSBarry Smith 
6048d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6049d71ae5a4SJacob Faibussowitsch {
60504222ddf1SHong Zhang   Mat_Product *product = C->product;
60514222ddf1SHong Zhang 
60524222ddf1SHong Zhang   PetscFunctionBegin;
605348a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60554222ddf1SHong Zhang }
6056394ed5ebSJunchao Zhang 
605727430b45SBarry Smith /*
605827430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6059394ed5ebSJunchao Zhang 
6060394ed5ebSJunchao Zhang   Input Parameters:
6061394ed5ebSJunchao Zhang 
6062651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6063651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6064394ed5ebSJunchao Zhang 
6065158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6066394ed5ebSJunchao Zhang 
6067394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6068394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6069394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6070394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6071394ed5ebSJunchao Zhang 
6072394ed5ebSJunchao Zhang     Similar for Set2.
6073394ed5ebSJunchao Zhang 
6074394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6075394ed5ebSJunchao Zhang 
6076158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6077394ed5ebSJunchao Zhang 
6078394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6079394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6080394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6081394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6082394ed5ebSJunchao Zhang */
6083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6084d71ae5a4SJacob Faibussowitsch {
6085394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6086394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6087394ed5ebSJunchao Zhang 
6088394ed5ebSJunchao Zhang   PetscFunctionBegin;
60899566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6090394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6091394ed5ebSJunchao Zhang   i[0]        = 0;
6092394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6093394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6094394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6095394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6096394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6097394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6098394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6099394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6100394ed5ebSJunchao Zhang         imap1[t1] = t;
6101394ed5ebSJunchao Zhang         imap2[t2] = t;
6102394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6103394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61049371c9d4SSatish Balay         t1++;
61059371c9d4SSatish Balay         t2++;
61069371c9d4SSatish Balay         t++;
6107394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6108394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6109394ed5ebSJunchao Zhang         imap1[t1] = t;
6110394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61119371c9d4SSatish Balay         t1++;
61129371c9d4SSatish Balay         t++;
6113394ed5ebSJunchao Zhang       } else {
6114394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6115394ed5ebSJunchao Zhang         imap2[t2] = t;
6116394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61179371c9d4SSatish Balay         t2++;
61189371c9d4SSatish Balay         t++;
6119394ed5ebSJunchao Zhang       }
6120394ed5ebSJunchao Zhang     }
6121394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6122394ed5ebSJunchao Zhang     while (b1 < e1) {
6123394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6124394ed5ebSJunchao Zhang       imap1[t1] = t;
6125394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61269371c9d4SSatish Balay       t1++;
61279371c9d4SSatish Balay       t++;
6128394ed5ebSJunchao Zhang     }
6129394ed5ebSJunchao Zhang     while (b2 < e2) {
6130394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6131394ed5ebSJunchao Zhang       imap2[t2] = t;
6132394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61339371c9d4SSatish Balay       t2++;
61349371c9d4SSatish Balay       t++;
6135394ed5ebSJunchao Zhang     }
61366497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6137394ed5ebSJunchao Zhang   }
61383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6139394ed5ebSJunchao Zhang }
6140394ed5ebSJunchao Zhang 
614127430b45SBarry Smith /*
614227430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6143394ed5ebSJunchao Zhang 
6144394ed5ebSJunchao Zhang   Input Parameters:
6145394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6146394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6147394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6148394ed5ebSJunchao Zhang 
6149394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6150394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6151394ed5ebSJunchao Zhang 
6152394ed5ebSJunchao Zhang   Output Parameters:
6153394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6154394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6155394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6156394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6157394ed5ebSJunchao Zhang 
6158394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6159158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6160158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6161394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6162394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6163394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6164394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6165394ed5ebSJunchao Zhang 
6166394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6167394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6168394ed5ebSJunchao Zhang 
6169394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6170394ed5ebSJunchao Zhang 
6171158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6172394ed5ebSJunchao Zhang */
6173d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6174d71ae5a4SJacob Faibussowitsch {
6175394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6176394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6177394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6178394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6179394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6180394ed5ebSJunchao Zhang 
6181394ed5ebSJunchao Zhang   PetscFunctionBegin;
61829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
61839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6184394ed5ebSJunchao Zhang   m = rend - rstart;
6185394ed5ebSJunchao Zhang 
6186651b1cf9SStefano Zampini   /* Skip negative rows */
6187651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
61889371c9d4SSatish Balay     if (i[k] >= 0) break;
6189394ed5ebSJunchao Zhang 
6190394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6191394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6192394ed5ebSJunchao Zhang   */
6193394ed5ebSJunchao Zhang   while (k < n) {
6194394ed5ebSJunchao Zhang     row = i[k];
6195394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
61969371c9d4SSatish Balay     for (s = k; s < n; s++)
61979371c9d4SSatish Balay       if (i[s] != row) break;
6198651b1cf9SStefano Zampini 
61991690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6200394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62011690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
6202394ed5ebSJunchao Zhang     }
62039566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6204158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6205394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6206394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6207394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
62088551dd9cSJunchao Zhang     PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N);
6209394ed5ebSJunchao Zhang 
6210394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6211394ed5ebSJunchao Zhang     Atot += mid - k;
6212394ed5ebSJunchao Zhang     Btot += s - mid;
6213394ed5ebSJunchao Zhang 
6214651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6215394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6216394ed5ebSJunchao Zhang       col = j[p];
62179371c9d4SSatish Balay       do {
62181690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62199371c9d4SSatish Balay         p++;
6220651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6221394ed5ebSJunchao Zhang       Annz++;
6222394ed5ebSJunchao Zhang     }
6223394ed5ebSJunchao Zhang 
6224651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6225394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6226394ed5ebSJunchao Zhang       col = j[p];
6227d71ae5a4SJacob Faibussowitsch       do {
6228d71ae5a4SJacob Faibussowitsch         p++;
6229d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6230394ed5ebSJunchao Zhang       Bnnz++;
6231394ed5ebSJunchao Zhang     }
6232394ed5ebSJunchao Zhang     k = s;
6233394ed5ebSJunchao Zhang   }
6234394ed5ebSJunchao Zhang 
6235394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6236158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6237158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6238158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6239158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6240394ed5ebSJunchao Zhang 
62416aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6242394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6243394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6244394ed5ebSJunchao Zhang     k   = rowBegin[r];
6245394ed5ebSJunchao Zhang     mid = rowMid[r];
6246394ed5ebSJunchao Zhang     s   = rowEnd[r];
62478e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
62488e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6249394ed5ebSJunchao Zhang     Atot += mid - k;
6250394ed5ebSJunchao Zhang     Btot += s - mid;
6251394ed5ebSJunchao Zhang 
6252394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6253394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6254394ed5ebSJunchao Zhang       col = j[p];
6255394ed5ebSJunchao Zhang       q   = p;
6256d71ae5a4SJacob Faibussowitsch       do {
6257d71ae5a4SJacob Faibussowitsch         p++;
6258d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6259394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6260394ed5ebSJunchao Zhang       Annz++;
6261394ed5ebSJunchao Zhang     }
6262394ed5ebSJunchao Zhang 
6263394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6264394ed5ebSJunchao Zhang       col = j[p];
6265394ed5ebSJunchao Zhang       q   = p;
6266d71ae5a4SJacob Faibussowitsch       do {
6267d71ae5a4SJacob Faibussowitsch         p++;
6268d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6269394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6270394ed5ebSJunchao Zhang       Bnnz++;
6271394ed5ebSJunchao Zhang     }
6272394ed5ebSJunchao Zhang   }
6273394ed5ebSJunchao Zhang   /* Output */
6274394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6275394ed5ebSJunchao Zhang   *Annz_  = Annz;
6276394ed5ebSJunchao Zhang   *Atot_  = Atot;
6277394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6278394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6279394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6280394ed5ebSJunchao Zhang   *Btot_  = Btot;
6281394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
62823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6283394ed5ebSJunchao Zhang }
6284394ed5ebSJunchao Zhang 
628527430b45SBarry Smith /*
628627430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6287158ec288SJunchao Zhang 
6288158ec288SJunchao Zhang   Input Parameters:
6289158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6290158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6291158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6292651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6293158ec288SJunchao Zhang 
6294158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6295158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6296158ec288SJunchao Zhang 
6297158ec288SJunchao Zhang   Example:
6298158ec288SJunchao Zhang     nnz1 = 4
6299158ec288SJunchao Zhang     nnz  = 6
6300158ec288SJunchao Zhang     imap = [1,3,4,5]
6301158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6302158ec288SJunchao Zhang    then,
6303158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6304158ec288SJunchao Zhang */
6305d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6306d71ae5a4SJacob Faibussowitsch {
6307158ec288SJunchao Zhang   PetscCount k, p;
6308158ec288SJunchao Zhang 
6309158ec288SJunchao Zhang   PetscFunctionBegin;
6310158ec288SJunchao Zhang   jmap_new[0] = 0;
6311158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6312158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6313158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6314158ec288SJunchao Zhang   }
6315158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6317158ec288SJunchao Zhang }
6318158ec288SJunchao Zhang 
631949abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63202c4ab24aSJunchao Zhang {
632149abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63222c4ab24aSJunchao Zhang 
63232c4ab24aSJunchao Zhang   PetscFunctionBegin;
63242c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63252c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63262c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63272c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63282c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63292c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63302c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63312c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63322c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63332c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63342c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63352c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63362c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63372c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63382c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63392c4ab24aSJunchao Zhang }
63402c4ab24aSJunchao Zhang 
6341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6342d71ae5a4SJacob Faibussowitsch {
6343394ed5ebSJunchao Zhang   MPI_Comm             comm;
6344394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6345394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6346394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6347394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63482c4ab24aSJunchao Zhang   PetscContainer       container;
63492c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6350394ed5ebSJunchao Zhang 
6351394ed5ebSJunchao Zhang   PetscFunctionBegin;
63529566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6354cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6355eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6356cbc6b225SStefano Zampini #else
63579566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6358cbc6b225SStefano Zampini #endif
63599566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6360cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6361cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6362cbc6b225SStefano Zampini 
63639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
63659566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
63669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
63679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
63689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
63699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
63709566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
63719566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6372394ed5ebSJunchao Zhang 
63736aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6374394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6375394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6376e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6377e8729f6fSJunchao Zhang 
6378e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6379394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6380394ed5ebSJunchao Zhang 
6381394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6382394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6383394ed5ebSJunchao Zhang      will have positive row indices.
6384394ed5ebSJunchao Zhang   */
6385394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
63861690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
63871690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6388f7d195e4SLawrence Mitchell     else {
6389f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
63901690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6391f7d195e4SLawrence Mitchell     }
6392394ed5ebSJunchao Zhang   }
6393394ed5ebSJunchao Zhang 
6394da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
63959566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6396651b1cf9SStefano Zampini 
6397651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6398651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
63991690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64006497c311SBarry Smith   PetscCount i1start = k;
6401651b1cf9SStefano Zampini 
64021690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64031690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6404394ed5ebSJunchao Zhang 
64052b35a777SBarry Smith   PetscCheck(n1 == 0 || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M);
64068551dd9cSJunchao Zhang 
6407394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6408394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6409394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6410394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6411394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6412394ed5ebSJunchao Zhang   const PetscInt *ranges;
6413394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6414394ed5ebSJunchao Zhang 
64159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6417394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6418394ed5ebSJunchao Zhang     PetscMPIInt owner;
6419394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6420cbc6b225SStefano Zampini 
6421394ed5ebSJunchao Zhang     /* Locate a row range */
6422394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64239566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6424394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6425394ed5ebSJunchao Zhang 
64268551dd9cSJunchao Zhang     /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */
64279566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6428394ed5ebSJunchao Zhang 
6429394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6430394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6431394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6432394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6433394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6434cbc6b225SStefano Zampini 
64359566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64369566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64379566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64389566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6439394ed5ebSJunchao Zhang       sendto   = sendto2;
6440394ed5ebSJunchao Zhang       nentries = nentries2;
6441394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6442394ed5ebSJunchao Zhang     }
6443394ed5ebSJunchao Zhang     sendto[nsend] = owner;
64446497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6445394ed5ebSJunchao Zhang     nsend++;
6446394ed5ebSJunchao Zhang     k = p;
6447394ed5ebSJunchao Zhang   }
6448394ed5ebSJunchao Zhang 
6449394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6450394ed5ebSJunchao Zhang   PetscSF      sf1;
6451394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6452394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6453394ed5ebSJunchao Zhang   PetscInt    *offsets;
6454394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6455394ed5ebSJunchao Zhang 
64569566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6459394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6460394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6461394ed5ebSJunchao Zhang     iremote[k].index = 0;
6462394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
646354c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6464394ed5ebSJunchao Zhang   }
64659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
64669566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
64679566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
64689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6469e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6470394ed5ebSJunchao Zhang 
6471394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6472394ed5ebSJunchao Zhang   PetscSF sf2;
6473394ed5ebSJunchao Zhang   nroots  = nroots2;
6474394ed5ebSJunchao Zhang   nleaves = nleaves2;
64759566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
64769566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
64779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6478394ed5ebSJunchao Zhang   p = 0;
6479394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
648054c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6481394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6482394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
64836497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6484394ed5ebSJunchao Zhang     }
6485394ed5ebSJunchao Zhang   }
64869566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6487394ed5ebSJunchao Zhang 
6488394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6489394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6490394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
64919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6492834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6493834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6494de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6495de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6496834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6497834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6498834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6499834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6500394ed5ebSJunchao Zhang 
65019566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65029566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6503394ed5ebSJunchao Zhang 
6504394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6505394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65069566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6507394ed5ebSJunchao Zhang 
6508651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6509651b1cf9SStefano Zampini   PetscCount *Cperm1;
6510834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6511de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6512651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6513834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6514651b1cf9SStefano Zampini 
6515651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6516651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6517651b1cf9SStefano Zampini   PetscBool hypre;
651817b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6519651b1cf9SStefano Zampini   if (hypre) {
6520651b1cf9SStefano Zampini     PetscInt *minj;
6521651b1cf9SStefano Zampini     PetscBT   hasdiag;
6522651b1cf9SStefano Zampini 
6523651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6524651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65251690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6526651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6527651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6528651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6529651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6530651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6531651b1cf9SStefano Zampini     }
6532651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6533651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6534651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6535651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6536651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6537651b1cf9SStefano Zampini     }
6538651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6539651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6540651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6541651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6542651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6543651b1cf9SStefano Zampini     }
6544651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6545651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6546651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6547651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6548651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6549651b1cf9SStefano Zampini     }
6550651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6551651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6552651b1cf9SStefano Zampini   }
6553651b1cf9SStefano Zampini 
6554651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6555651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6556651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6557651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6558394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6559394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6560394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6561394ed5ebSJunchao Zhang 
6562651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6564651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65659566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6566394ed5ebSJunchao Zhang 
6567394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6568394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6569394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6570394ed5ebSJunchao Zhang 
65719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
65729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
65739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
65749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6575394ed5ebSJunchao Zhang 
6576394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6577158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6578158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6579158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6580158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6581394ed5ebSJunchao Zhang 
65829566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
65839566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6584158ec288SJunchao Zhang 
6585158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6586158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6587158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6588158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6589158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6590158ec288SJunchao Zhang 
6591158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6592158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6593158ec288SJunchao Zhang 
6594158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6595158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6596158ec288SJunchao Zhang 
6597158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6598158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6599158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6600158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66019566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66029566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6603e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66049566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6605394ed5ebSJunchao Zhang 
6606158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6607158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6608158ec288SJunchao Zhang 
6609394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6610394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6611394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66139566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66149566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6615394ed5ebSJunchao Zhang     Aj = Aj_new;
6616394ed5ebSJunchao Zhang   }
6617394ed5ebSJunchao Zhang 
6618394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6619394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66219566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66229566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6623394ed5ebSJunchao Zhang     Bj = Bj_new;
6624394ed5ebSJunchao Zhang   }
6625394ed5ebSJunchao Zhang 
6626cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6627394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6628cbc6b225SStefano Zampini   MatType          rtype;
6629394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6630cf8ba265SJunchao Zhang   PetscObjectState state;
66319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6633394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66349371c9d4SSatish Balay   if (cstart) {
66359371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66369371c9d4SSatish Balay   }
6637c508b908SBarry Smith 
66389566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6639c508b908SBarry Smith 
6640c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6641c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
66429566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66430da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6644c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6645c508b908SBarry Smith 
6646c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6647c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
66489566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66490da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6650c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6651c508b908SBarry Smith 
66529566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66535bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6654cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6655462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6656cbc6b225SStefano Zampini 
6657394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6658394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
66599f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
66609f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
66619f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
66629f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
666317b874c6SStefano Zampini   a->maxnz   = a->nz;
666417b874c6SStefano Zampini   b->maxnz   = b->nz;
6665394ed5ebSJunchao Zhang 
6666cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66679566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66689566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
66699566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
66709566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6671cbc6b225SStefano Zampini 
66722c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
66732c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
66742c4ab24aSJunchao Zhang   coo->n       = coo_n;
66752c4ab24aSJunchao Zhang   coo->sf      = sf2;
66762c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
66772c4ab24aSJunchao Zhang   coo->recvlen = nroots;
66782c4ab24aSJunchao Zhang   coo->Annz    = Annz;
66792c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
66802c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
66812c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
66822c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
66832c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
66842c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
66852c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
66862c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
66872c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
66882c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
66892c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
66902c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
66912c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
66922c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
66932c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
66942c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
66952c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
66962c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
66972c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
66982c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
66992c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67002c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
670149abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67022c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67032c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6705394ed5ebSJunchao Zhang }
6706394ed5ebSJunchao Zhang 
6707d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6708d71ae5a4SJacob Faibussowitsch {
6709394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6710394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6711394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67122c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67132c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67142c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67152c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67162c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67172c4ab24aSJunchao Zhang   PetscContainer       container;
67182c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6719394ed5ebSJunchao Zhang 
6720394ed5ebSJunchao Zhang   PetscFunctionBegin;
67212c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67222c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67232c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67242c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67252c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67262c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67272c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67282c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67292c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67302c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67312c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67322c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67332c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67342c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67352c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67362c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67372c4ab24aSJunchao Zhang 
67389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6740394ed5ebSJunchao Zhang 
6741394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67422c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6743394ed5ebSJunchao Zhang 
6744394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67452c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6746394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67472c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6748da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6749158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6750158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6751394ed5ebSJunchao Zhang   }
67522c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6753158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6754158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6755158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6756394ed5ebSJunchao Zhang   }
67572c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6758394ed5ebSJunchao Zhang 
6759394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67602c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6761394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6762394ed5ebSJunchao Zhang   }
67632c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6764394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6765394ed5ebSJunchao Zhang   }
67669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6769394ed5ebSJunchao Zhang }
6770394ed5ebSJunchao Zhang 
6771ccd8e176SBarry Smith /*MC
6772ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6773ccd8e176SBarry Smith 
6774ccd8e176SBarry Smith    Options Database Keys:
677511a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6776ccd8e176SBarry Smith 
6777ccd8e176SBarry Smith    Level: beginner
67780cd7f59aSBarry Smith 
67790cd7f59aSBarry Smith    Notes:
67802ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
67810cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
67820cd7f59aSBarry Smith     in the matrix
67830cd7f59aSBarry Smith 
678411a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
678511a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6786ccd8e176SBarry Smith 
67871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6788ccd8e176SBarry Smith M*/
6789d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6790d71ae5a4SJacob Faibussowitsch {
6791ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6792ccd8e176SBarry Smith   PetscMPIInt size;
6793ccd8e176SBarry Smith 
6794ccd8e176SBarry Smith   PetscFunctionBegin;
67959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
67962205254eSKarl Rupp 
67974dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6798ccd8e176SBarry Smith   B->data       = (void *)b;
6799aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6800ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6801ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6802ccd8e176SBarry Smith   b->size       = size;
68032205254eSKarl Rupp 
68049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6805ccd8e176SBarry Smith 
6806ccd8e176SBarry Smith   /* build cache for off array entries formed */
68079566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68082205254eSKarl Rupp 
6809ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6810f4259b30SLisandro Dalcin   b->colmap      = NULL;
6811f4259b30SLisandro Dalcin   b->garray      = NULL;
6812ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6813ccd8e176SBarry Smith 
6814ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68150298fd71SBarry Smith   b->lvec  = NULL;
68160298fd71SBarry Smith   b->Mvctx = NULL;
6817ccd8e176SBarry Smith 
6818ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6819f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6820f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6821ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6822ccd8e176SBarry Smith 
6823f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68240298fd71SBarry Smith   b->spptr = NULL;
6825f60c3dc2SHong Zhang 
68269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6832674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
68339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68373d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68393d0639e7SStefano Zampini #endif
6840d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6841d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6842d5e393b6SSuyash Tandon #endif
68433d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68453d0639e7SStefano Zampini #endif
68469779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6848191b95cbSRichard Tran Mills #endif
68499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68535d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68549566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68555d7652ecSHong Zhang #endif
6856d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
68579566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6858d24d4204SJose E. Roman #endif
68599566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68613dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68629566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68643dad0653Sstefano_zampini #endif
68659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
68699566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
68703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6871ccd8e176SBarry Smith }
687281824310SBarry Smith 
68735d83a8b1SBarry Smith /*@
687411a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
687503bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
687603bfb495SBarry Smith 
6877d083f849SBarry Smith   Collective
687803bfb495SBarry Smith 
687903bfb495SBarry Smith   Input Parameters:
688003bfb495SBarry Smith + comm - MPI communicator
688111a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
688203bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6883d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
68842ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
68852ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
68862ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6887483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
688804ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
688903bfb495SBarry Smith . a    - matrix values
6890483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
68912ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
689203bfb495SBarry Smith - oa   - matrix values
689303bfb495SBarry Smith 
689403bfb495SBarry Smith   Output Parameter:
689503bfb495SBarry Smith . mat - the matrix
689603bfb495SBarry Smith 
689703bfb495SBarry Smith   Level: advanced
689803bfb495SBarry Smith 
689903bfb495SBarry Smith   Notes:
6900f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6901292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
690203bfb495SBarry Smith 
69032ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
690403bfb495SBarry Smith 
69052ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
690603bfb495SBarry Smith 
69077b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69087b55108eSBarry Smith 
6909dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6910dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6911dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6912dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
691311a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6914dca341c0SJed Brown   communication if it is known that only local entries will be set.
691503bfb495SBarry Smith 
69161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6917db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69182b26979fSBarry Smith @*/
6919d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6920d71ae5a4SJacob Faibussowitsch {
692103bfb495SBarry Smith   Mat_MPIAIJ *maij;
692203bfb495SBarry Smith 
692303bfb495SBarry Smith   PetscFunctionBegin;
692408401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6925aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6926aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69279566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69289566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69299566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
693003bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69312205254eSKarl Rupp 
69328d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
693303bfb495SBarry Smith 
69349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
693603bfb495SBarry Smith 
69379566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69389566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
693903bfb495SBarry Smith 
69409566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69439566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69449566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
694603bfb495SBarry Smith }
694703bfb495SBarry Smith 
69484e84afc0SStefano Zampini typedef struct {
69494e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69504e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69514e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69524e84afc0SStefano Zampini 
69534e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69544e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69554e84afc0SStefano Zampini   PetscScalar *bufa;
69564e84afc0SStefano Zampini   Mat          P_oth;
69574e84afc0SStefano Zampini 
69584e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6959ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69604e84afc0SStefano Zampini 
6961ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69624e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69634e84afc0SStefano Zampini      of the temporary storage */
69644e84afc0SStefano Zampini   PetscBool reusesym;
69654e84afc0SStefano Zampini 
69664e84afc0SStefano Zampini   /* support for COO values insertion */
6967ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6968ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
6969ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
6970ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
6971c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
6972c215019aSStefano Zampini   PetscMemType mtype;
69734e84afc0SStefano Zampini 
69744e84afc0SStefano Zampini   /* customization */
69754e84afc0SStefano Zampini   PetscBool abmerge;
6976abb89eb1SStefano Zampini   PetscBool P_oth_bind;
69774e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
69784e84afc0SStefano Zampini 
6979cc1eb50dSBarry Smith static PetscErrorCode MatProductCtxDestroy_MatMatMPIAIJBACKEND(void **data)
6980d71ae5a4SJacob Faibussowitsch {
6981cc1eb50dSBarry Smith   MatMatMPIAIJBACKEND *mmdata = *(MatMatMPIAIJBACKEND **)data;
69824e84afc0SStefano Zampini   PetscInt             i;
69834e84afc0SStefano Zampini 
69844e84afc0SStefano Zampini   PetscFunctionBegin;
69859566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
69869566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
69879566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
69889566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
69899566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
69909566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
69919566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
699248a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
69939566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
69949566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
69959566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
69969566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
69979566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
69989566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
69993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70004e84afc0SStefano Zampini }
70014e84afc0SStefano Zampini 
7002fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7003fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7004fff043a9SJunchao Zhang  */
7005d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7006d71ae5a4SJacob Faibussowitsch {
7007c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7008c215019aSStefano Zampini 
7009c215019aSStefano Zampini   PetscFunctionBegin;
70109566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7011c215019aSStefano Zampini   if (f) {
70129566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7013c215019aSStefano Zampini   } else {
7014c215019aSStefano Zampini     const PetscScalar *vv;
7015c215019aSStefano Zampini 
70169566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7017c215019aSStefano Zampini     if (n && idx) {
7018c215019aSStefano Zampini       PetscScalar    *w  = v;
7019c215019aSStefano Zampini       const PetscInt *oi = idx;
7020c215019aSStefano Zampini       PetscInt        j;
7021c215019aSStefano Zampini 
7022c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7023c215019aSStefano Zampini     } else {
70249566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7025c215019aSStefano Zampini     }
70269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7027c215019aSStefano Zampini   }
70283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7029c215019aSStefano Zampini }
7030c215019aSStefano Zampini 
7031d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7032d71ae5a4SJacob Faibussowitsch {
70334e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70344e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70354e84afc0SStefano Zampini 
70364e84afc0SStefano Zampini   PetscFunctionBegin;
70374e84afc0SStefano Zampini   MatCheckProduct(C, 1);
703828b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70394e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70404e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
704148a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
704248a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70434e84afc0SStefano Zampini   }
70444e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7045abb89eb1SStefano Zampini 
7046abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
704708401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70489566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7049abb89eb1SStefano Zampini   }
70504e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70516497c311SBarry Smith     PetscInt noff;
70524e84afc0SStefano Zampini 
70536497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
70544e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70554e84afc0SStefano Zampini     if (noff) {
70566497c311SBarry Smith       PetscInt nown;
7057c215019aSStefano Zampini 
70586497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
70599566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70609566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70614e84afc0SStefano Zampini       n_o += noff;
70624e84afc0SStefano Zampini       n_d += nown;
70634e84afc0SStefano Zampini     } else {
7064c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7065c215019aSStefano Zampini 
70669566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70674e84afc0SStefano Zampini       n_d += mm->nz;
70684e84afc0SStefano Zampini     }
70694e84afc0SStefano Zampini   }
7070c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
70719566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70729566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70734e84afc0SStefano Zampini   }
70749566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
70753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70764e84afc0SStefano Zampini }
70774e84afc0SStefano Zampini 
70784e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
70794e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7080d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7081d71ae5a4SJacob Faibussowitsch {
70824e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7083ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
70844e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
70854e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
70864e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
70874e84afc0SStefano Zampini   IS                     glob      = NULL;
70884e84afc0SStefano Zampini   const char            *prefix;
70894e84afc0SStefano Zampini   char                   pprefix[256];
70904e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
709182a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
709282a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7093ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7094ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7095ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7096ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7097ddea5d60SJunchao Zhang 
70984e84afc0SStefano Zampini   MatProductType ptype;
7099d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71004e84afc0SStefano Zampini   PetscMPIInt    size;
71014e84afc0SStefano Zampini 
71024e84afc0SStefano Zampini   PetscFunctionBegin;
71034e84afc0SStefano Zampini   MatCheckProduct(C, 1);
710428b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71054e84afc0SStefano Zampini   ptype = product->type;
7106b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7107fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7108fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7109fa046f9fSJunchao Zhang   }
71104e84afc0SStefano Zampini   switch (ptype) {
71114e84afc0SStefano Zampini   case MATPRODUCT_AB:
71124e84afc0SStefano Zampini     A          = product->A;
71134e84afc0SStefano Zampini     P          = product->B;
71144e84afc0SStefano Zampini     m          = A->rmap->n;
71154e84afc0SStefano Zampini     n          = P->cmap->n;
71164e84afc0SStefano Zampini     M          = A->rmap->N;
71174e84afc0SStefano Zampini     N          = P->cmap->N;
7118ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71194e84afc0SStefano Zampini     break;
71204e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71214e84afc0SStefano Zampini     P          = product->A;
71224e84afc0SStefano Zampini     A          = product->B;
71234e84afc0SStefano Zampini     m          = P->cmap->n;
71244e84afc0SStefano Zampini     n          = A->cmap->n;
71254e84afc0SStefano Zampini     M          = P->cmap->N;
71264e84afc0SStefano Zampini     N          = A->cmap->N;
71274e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71284e84afc0SStefano Zampini     break;
71294e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71304e84afc0SStefano Zampini     A          = product->A;
71314e84afc0SStefano Zampini     P          = product->B;
71324e84afc0SStefano Zampini     m          = P->cmap->n;
71334e84afc0SStefano Zampini     n          = P->cmap->n;
71344e84afc0SStefano Zampini     M          = P->cmap->N;
71354e84afc0SStefano Zampini     N          = P->cmap->N;
71364e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71374e84afc0SStefano Zampini     break;
7138d71ae5a4SJacob Faibussowitsch   default:
7139d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71404e84afc0SStefano Zampini   }
71419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71424e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71434e84afc0SStefano Zampini 
71444e84afc0SStefano Zampini   /* defaults */
71454e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71464e84afc0SStefano Zampini     mp[i]    = NULL;
71474e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71484e84afc0SStefano Zampini     rmapt[i] = -1;
71494e84afc0SStefano Zampini     cmapt[i] = -1;
71504e84afc0SStefano Zampini     rmapa[i] = NULL;
71514e84afc0SStefano Zampini     cmapa[i] = NULL;
71524e84afc0SStefano Zampini   }
71534e84afc0SStefano Zampini 
71544e84afc0SStefano Zampini   /* customization */
71559566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71564e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71574e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71584e84afc0SStefano Zampini     if (product->api_user) {
7159d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71609566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71619566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7162d0609cedSBarry Smith       PetscOptionsEnd();
71634e84afc0SStefano Zampini     } else {
7164d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71659566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71669566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7167d0609cedSBarry Smith       PetscOptionsEnd();
7168abb89eb1SStefano Zampini     }
7169abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7170abb89eb1SStefano Zampini     if (product->api_user) {
7171d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
71729566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7173d0609cedSBarry Smith       PetscOptionsEnd();
7174abb89eb1SStefano Zampini     } else {
7175d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
71769566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7177d0609cedSBarry Smith       PetscOptionsEnd();
71784e84afc0SStefano Zampini     }
71794e84afc0SStefano Zampini   }
71804e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
71814e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
71829566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
71839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
71849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
71859566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
71869566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7187ddea5d60SJunchao Zhang 
7188ddea5d60SJunchao Zhang   cp = 0;
71894e84afc0SStefano Zampini   switch (ptype) {
71904e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
71919566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
71924e84afc0SStefano Zampini 
7193ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7194ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
71954e84afc0SStefano Zampini       /* P is product->B */
71969566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
71979566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
71989566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
71999566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72009566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72019566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72029566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72034e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72049566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72059566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72069566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72074e84afc0SStefano Zampini       rmapt[cp] = 1;
72084e84afc0SStefano Zampini       cmapt[cp] = 2;
72094e84afc0SStefano Zampini       cmapa[cp] = globidx;
72104e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72114e84afc0SStefano Zampini       cp++;
7212ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72139566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72149566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72159566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72169566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72179566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72189566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72194e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72209566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72219566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72224e84afc0SStefano Zampini       rmapt[cp] = 1;
72234e84afc0SStefano Zampini       cmapt[cp] = 1;
72244e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72254e84afc0SStefano Zampini       cp++;
72269566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72279566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72289566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72299566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72309566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72319566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72324e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72339566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72349566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72354e84afc0SStefano Zampini       rmapt[cp] = 1;
72364e84afc0SStefano Zampini       cmapt[cp] = 2;
72374e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72384e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72394e84afc0SStefano Zampini       cp++;
72404e84afc0SStefano Zampini     }
7241ddea5d60SJunchao Zhang 
7242ddea5d60SJunchao Zhang     /* A_off * P_other */
72434e84afc0SStefano Zampini     if (mmdata->P_oth) {
72449566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72459566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7246f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
72479566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72489566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72499566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72509566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72519566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72529566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72539566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72544e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72559566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72569566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72574e84afc0SStefano Zampini       rmapt[cp] = 1;
72584e84afc0SStefano Zampini       cmapt[cp] = 2;
72594e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72604e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72614e84afc0SStefano Zampini       cp++;
72624e84afc0SStefano Zampini     }
72634e84afc0SStefano Zampini     break;
7264ddea5d60SJunchao Zhang 
72654e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72664e84afc0SStefano Zampini     /* A is product->B */
72679566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7268ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
72699566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
72709566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72719566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72729566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72739566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72749566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72754e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72769566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72779566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72789566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72794e84afc0SStefano Zampini       rmapt[cp] = 2;
72804e84afc0SStefano Zampini       rmapa[cp] = globidx;
72814e84afc0SStefano Zampini       cmapt[cp] = 2;
72824e84afc0SStefano Zampini       cmapa[cp] = globidx;
72834e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72844e84afc0SStefano Zampini       cp++;
72854e84afc0SStefano Zampini     } else {
72869566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
72879566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72889566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72899566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72909566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72919566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72924e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72939566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72949566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72959566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72964e84afc0SStefano Zampini       rmapt[cp] = 1;
72974e84afc0SStefano Zampini       cmapt[cp] = 2;
72984e84afc0SStefano Zampini       cmapa[cp] = globidx;
72994e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73004e84afc0SStefano Zampini       cp++;
73019566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73029566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73039566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73049566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73059566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73069566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73074e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73089566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73099566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73104e84afc0SStefano Zampini       rmapt[cp] = 2;
73114e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73124e84afc0SStefano Zampini       cmapt[cp] = 2;
73134e84afc0SStefano Zampini       cmapa[cp] = globidx;
73144e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73154e84afc0SStefano Zampini       cp++;
73164e84afc0SStefano Zampini     }
73174e84afc0SStefano Zampini     break;
73184e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73199566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73204e84afc0SStefano Zampini     /* P is product->B */
73219566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73229566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73239566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73249566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73259566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73269566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73279566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73284e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73299566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73309566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73319566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73324e84afc0SStefano Zampini     rmapt[cp] = 2;
73334e84afc0SStefano Zampini     rmapa[cp] = globidx;
73344e84afc0SStefano Zampini     cmapt[cp] = 2;
73354e84afc0SStefano Zampini     cmapa[cp] = globidx;
73364e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73374e84afc0SStefano Zampini     cp++;
73384e84afc0SStefano Zampini     if (mmdata->P_oth) {
73399566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73409566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7341f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73429566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73439566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73449566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73459566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73469566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73479566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73489566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73494e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73509566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73519566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73524e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73534e84afc0SStefano Zampini       cp++;
73549566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73559566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73569566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73579566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73589566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73599566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73604e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73619566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73629566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73634e84afc0SStefano Zampini       rmapt[cp] = 2;
73644e84afc0SStefano Zampini       rmapa[cp] = globidx;
73654e84afc0SStefano Zampini       cmapt[cp] = 2;
73664e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73674e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73684e84afc0SStefano Zampini       cp++;
73694e84afc0SStefano Zampini     }
73704e84afc0SStefano Zampini     break;
7371d71ae5a4SJacob Faibussowitsch   default:
7372d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
73734e84afc0SStefano Zampini   }
73744e84afc0SStefano Zampini   /* sanity check */
73759371c9d4SSatish Balay   if (size > 1)
73769371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
73774e84afc0SStefano Zampini 
73789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7379ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7380ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7381ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7382ddea5d60SJunchao Zhang   }
73834e84afc0SStefano Zampini   mmdata->cp             = cp;
73844e84afc0SStefano Zampini   C->product->data       = mmdata;
7385cc1eb50dSBarry Smith   C->product->destroy    = MatProductCtxDestroy_MatMatMPIAIJBACKEND;
73864e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
73874e84afc0SStefano Zampini 
7388c215019aSStefano Zampini   /* memory type */
7389c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
73909566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7391d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
73929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7393c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7394d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
73953214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7396c215019aSStefano Zampini 
73974e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7398ddea5d60SJunchao Zhang 
7399ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7400ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7401ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7402ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7403ddea5d60SJunchao Zhang   */
74044e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74054e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74064e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7407ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74084e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74094e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74104e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74114e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74124e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74134e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74144e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74154e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7416ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7417ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74184e84afc0SStefano Zampini       }
74194e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74204e84afc0SStefano Zampini   }
7421ddea5d60SJunchao Zhang 
7422ddea5d60SJunchao Zhang   /*
7423ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7424ddea5d60SJunchao Zhang 
7425ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7426ddea5d60SJunchao Zhang 
7427d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7428ddea5d60SJunchao Zhang 
7429ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7430ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7431ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7432ddea5d60SJunchao Zhang 
7433ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7434da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7435ddea5d60SJunchao Zhang   */
74369566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7438ddea5d60SJunchao Zhang 
7439ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7440ddea5d60SJunchao Zhang   if (hasoffproc) {
74414e84afc0SStefano Zampini     PetscSF  msf;
74424e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74434e84afc0SStefano Zampini 
74449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7447ddea5d60SJunchao Zhang 
74484e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74494e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74504e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74514e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7452ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74534e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74544e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74554e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74564e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74574e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74584e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74594e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74604e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74614e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74624e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74634e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74644e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74654e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7466ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74674e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74684e84afc0SStefano Zampini               *coi++    = gr;
74694e84afc0SStefano Zampini               *idxoff++ = j;
74704e84afc0SStefano Zampini             }
74714e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
74724e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
74734e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
74744e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
74754e84afc0SStefano Zampini             } else { /* offdiag */
74764e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
74774e84afc0SStefano Zampini             }
74784e84afc0SStefano Zampini             ncoo_o += nz;
7479ddea5d60SJunchao Zhang           } else { /* this is a local row */
74804e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
74814e84afc0SStefano Zampini           }
74824e84afc0SStefano Zampini         }
74834e84afc0SStefano Zampini       }
74844e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
74854e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
74864e84afc0SStefano Zampini     }
74874e84afc0SStefano Zampini 
74889566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
74896497c311SBarry Smith     PetscInt incoo_o;
74906497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
74916497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
74929566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
74939566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
74944e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
74959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
74969566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
74979566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
74989566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
74999566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75009566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7501ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75029566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75034e84afc0SStefano Zampini     coo_i = coo_i2;
75044e84afc0SStefano Zampini     coo_j = coo_j2;
75054e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75064e84afc0SStefano Zampini     ncoo = ncoo_d;
75079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7508c215019aSStefano Zampini 
75099566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75109566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75119566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75124e84afc0SStefano Zampini   }
7513c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75144e84afc0SStefano Zampini 
7515ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75164e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75174e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75184e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75194e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75204e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75214e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75224e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75234e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75244e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75254e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75264e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75274e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75284e84afc0SStefano Zampini 
75294e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7530ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7531ddea5d60SJunchao Zhang       /* fill coo_i */
75324e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75334e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75344e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75354e84afc0SStefano Zampini       }
7536ddea5d60SJunchao Zhang       /* fill coo_j */
7537ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75389566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7539ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7540ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7541ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75424e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75434e84afc0SStefano Zampini       }
75444e84afc0SStefano Zampini       ncoo_d += mm->nz;
7545ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75464e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75474e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75484e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75494e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7550ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75514e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7552ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75534e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75544e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75554e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7556ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75574e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75584e84afc0SStefano Zampini           }
75594e84afc0SStefano Zampini           ncoo_d += nz;
75604e84afc0SStefano Zampini         }
75614e84afc0SStefano Zampini       }
75624e84afc0SStefano Zampini     }
75634e84afc0SStefano Zampini   }
756448a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75659566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
756648a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75679566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7568ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
75699566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
75704e84afc0SStefano Zampini 
757139cfb508SMark Adams   /* set block sizes */
757239cfb508SMark Adams   A = product->A;
757339cfb508SMark Adams   P = product->B;
757439cfb508SMark Adams   switch (ptype) {
757539cfb508SMark Adams   case MATPRODUCT_PtAP:
757658b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
757739cfb508SMark Adams     break;
757839cfb508SMark Adams   case MATPRODUCT_RARt:
757958b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
758039cfb508SMark Adams     break;
758139cfb508SMark Adams   case MATPRODUCT_ABC:
758239cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
758339cfb508SMark Adams     break;
758439cfb508SMark Adams   case MATPRODUCT_AB:
758539cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
758639cfb508SMark Adams     break;
758739cfb508SMark Adams   case MATPRODUCT_AtB:
758858b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
758939cfb508SMark Adams     break;
759039cfb508SMark Adams   case MATPRODUCT_ABt:
759158b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
759239cfb508SMark Adams     break;
759339cfb508SMark Adams   default:
759439cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
759539cfb508SMark Adams   }
759639cfb508SMark Adams 
75974e84afc0SStefano Zampini   /* preallocate with COO data */
75989566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
75999566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76014e84afc0SStefano Zampini }
76024e84afc0SStefano Zampini 
7603d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7604d71ae5a4SJacob Faibussowitsch {
76054e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76064e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76074e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7608abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76094e84afc0SStefano Zampini #else
76104e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76114e84afc0SStefano Zampini #endif
76124e84afc0SStefano Zampini 
76134e84afc0SStefano Zampini   PetscFunctionBegin;
76144e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76154e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
761648a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
761765e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7618abb89eb1SStefano Zampini     switch (product->type) {
7619abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7620abb89eb1SStefano Zampini       if (product->api_user) {
7621d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76229566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7623d0609cedSBarry Smith         PetscOptionsEnd();
7624abb89eb1SStefano Zampini       } else {
7625d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76269566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7627d0609cedSBarry Smith         PetscOptionsEnd();
7628abb89eb1SStefano Zampini       }
7629abb89eb1SStefano Zampini       break;
7630abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7631abb89eb1SStefano Zampini       if (product->api_user) {
7632d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76339566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7634d0609cedSBarry Smith         PetscOptionsEnd();
7635abb89eb1SStefano Zampini       } else {
7636d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76379566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7638d0609cedSBarry Smith         PetscOptionsEnd();
7639abb89eb1SStefano Zampini       }
7640abb89eb1SStefano Zampini       break;
7641abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7642abb89eb1SStefano Zampini       if (product->api_user) {
7643d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76449566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7645d0609cedSBarry Smith         PetscOptionsEnd();
7646abb89eb1SStefano Zampini       } else {
7647d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76489566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7649d0609cedSBarry Smith         PetscOptionsEnd();
7650abb89eb1SStefano Zampini       }
7651abb89eb1SStefano Zampini       break;
7652d71ae5a4SJacob Faibussowitsch     default:
7653d71ae5a4SJacob Faibussowitsch       break;
7654abb89eb1SStefano Zampini     }
7655abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7656abb89eb1SStefano Zampini   }
76574e84afc0SStefano Zampini #endif
76584e84afc0SStefano Zampini   if (match) {
76594e84afc0SStefano Zampini     switch (product->type) {
76604e84afc0SStefano Zampini     case MATPRODUCT_AB:
76614e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7662d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7663d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7664d71ae5a4SJacob Faibussowitsch       break;
7665d71ae5a4SJacob Faibussowitsch     default:
7666d71ae5a4SJacob Faibussowitsch       break;
76674e84afc0SStefano Zampini     }
76684e84afc0SStefano Zampini   }
76694e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76709566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
767281824310SBarry Smith }
767398921bdaSJacob Faibussowitsch 
767498921bdaSJacob Faibussowitsch /*
767572833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
767672833a62Smarkadams4 
767772833a62Smarkadams4    n - the number of block indices in cc[]
767872833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
767972833a62Smarkadams4 */
7680d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7681d71ae5a4SJacob Faibussowitsch {
768272833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
768372833a62Smarkadams4   const PetscInt *idx;
768472833a62Smarkadams4 
768572833a62Smarkadams4   PetscFunctionBegin;
768672833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
768772833a62Smarkadams4   if (nidx) {
768872833a62Smarkadams4     cnt     = 0;
768972833a62Smarkadams4     cc[cnt] = idx[0] / bs;
769072833a62Smarkadams4     for (j = 1; j < nidx; j++) {
769172833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
769272833a62Smarkadams4     }
769372833a62Smarkadams4   }
769472833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
769572833a62Smarkadams4   *n = cnt + 1;
76963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
769772833a62Smarkadams4 }
769872833a62Smarkadams4 
769972833a62Smarkadams4 /*
770072833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
770172833a62Smarkadams4 
770272833a62Smarkadams4     ncollapsed - the number of block indices
770372833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
770472833a62Smarkadams4 */
7705d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7706d71ae5a4SJacob Faibussowitsch {
770772833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
770872833a62Smarkadams4 
770972833a62Smarkadams4   PetscFunctionBegin;
771072833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
771172833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
771272833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
771372833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77149371c9d4SSatish Balay     cprevtmp = cprev;
77159371c9d4SSatish Balay     cprev    = merged;
77169371c9d4SSatish Balay     merged   = cprevtmp;
771772833a62Smarkadams4   }
771872833a62Smarkadams4   *ncollapsed = nprev;
771972833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772172833a62Smarkadams4 }
772272833a62Smarkadams4 
77232d776b49SBarry Smith /*
772472833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
772572833a62Smarkadams4 
772672833a62Smarkadams4  Input Parameter:
772772833a62Smarkadams4  . Amat - matrix
772872833a62Smarkadams4  - symmetrize - make the result symmetric
772972833a62Smarkadams4  + scale - scale with diagonal
773072833a62Smarkadams4 
773172833a62Smarkadams4  Output Parameter:
773272833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
773372833a62Smarkadams4 
773472833a62Smarkadams4 */
7735e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7736d71ae5a4SJacob Faibussowitsch {
773772833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
773872833a62Smarkadams4   MPI_Comm  comm;
773972833a62Smarkadams4   Mat       Gmat;
774072833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
774172833a62Smarkadams4   Mat       a, b, c;
774272833a62Smarkadams4   MatType   jtype;
774372833a62Smarkadams4 
774472833a62Smarkadams4   PetscFunctionBegin;
774572833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
774672833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
774772833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
774872833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
774972833a62Smarkadams4   nloc = (Iend - Istart) / bs;
775072833a62Smarkadams4 
775172833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
775272833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
775372833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
775472833a62Smarkadams4 
775572833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
775672833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
775772833a62Smarkadams4      implementation */
775872833a62Smarkadams4   if (bs > 1) {
775972833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
776072833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
776172833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
776272833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
776372833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
776472833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
776572833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77662cf69117Smarkadams4       MatScalar *aa, val, *AA;
77672cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77686497c311SBarry Smith 
77699371c9d4SSatish Balay       if (isseqaij) {
77709371c9d4SSatish Balay         a = Amat;
77719371c9d4SSatish Balay         b = NULL;
77729371c9d4SSatish Balay       } else {
777372833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77749371c9d4SSatish Balay         a             = d->A;
77759371c9d4SSatish Balay         b             = d->B;
777672833a62Smarkadams4       }
777772833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
777832603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
777972833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77802cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
778159ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
77826497c311SBarry Smith 
778359ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
778459ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
778559ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
778659ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
778772833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
778859ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
778959ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
779059ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
779159ee9f9fSPierre Jolivet             else {
779259ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
779359ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
779459ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
779572833a62Smarkadams4               }
779659ee9f9fSPierre Jolivet             }
779759ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
779859ee9f9fSPierre Jolivet           }
779959ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
780072833a62Smarkadams4           if (!ok) {
780172833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
780259ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
780372833a62Smarkadams4             goto old_bs;
780472833a62Smarkadams4           }
780572833a62Smarkadams4         }
780672833a62Smarkadams4       }
780772833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
780872833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
780972833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78102cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
781172833a62Smarkadams4       // diag
781272833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
781372833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78146497c311SBarry Smith 
781572833a62Smarkadams4         ai = aseq->i;
781672833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
781772833a62Smarkadams4         aj = aseq->j + ai[brow];
78186497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
781972833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
782072833a62Smarkadams4           val        = 0;
7821e02fb3cdSMark Adams           if (index_size == 0) {
78226497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
782372833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78246497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
782572833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
782672833a62Smarkadams4               }
782772833a62Smarkadams4             }
7828e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78296497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78306497c311SBarry Smith               PetscInt ii = index[iii];
7831e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78326497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78336497c311SBarry Smith                 PetscInt jj = index[jjj];
7834cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7835e02fb3cdSMark Adams               }
7836e02fb3cdSMark Adams             }
7837e02fb3cdSMark Adams           }
7838835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
783972833a62Smarkadams4           AA[k / bs] = val;
784072833a62Smarkadams4         }
784172833a62Smarkadams4         grow = Istart / bs + brow / bs;
784266521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
784372833a62Smarkadams4       }
784472833a62Smarkadams4       // off-diag
784572833a62Smarkadams4       if (ismpiaij) {
784672833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
784772833a62Smarkadams4         const PetscScalar *vals;
784872833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78496497c311SBarry Smith 
785072833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
785172833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
785272833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78536497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
785459ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
785572833a62Smarkadams4             AA[k / bs] = 0;
785672833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
785772833a62Smarkadams4           }
785872833a62Smarkadams4           nc = ncols / bs;
785972833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7860e02fb3cdSMark Adams           if (index_size == 0) {
78616497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
786272833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78636497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78646497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7865835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
786672833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
786772833a62Smarkadams4                 }
786872833a62Smarkadams4               }
786972833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
787072833a62Smarkadams4             }
7871e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78726497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78736497c311SBarry Smith               PetscInt ii = index[iii];
7874e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78756497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78766497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
78776497c311SBarry Smith                   PetscInt jj = index[jjj];
7878e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7879e02fb3cdSMark Adams                 }
7880e02fb3cdSMark Adams               }
7881e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7882e02fb3cdSMark Adams             }
7883e02fb3cdSMark Adams           }
788472833a62Smarkadams4           grow = Istart / bs + brow / bs;
788566521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
788672833a62Smarkadams4         }
788772833a62Smarkadams4       }
788872833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
788972833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
78902cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
789172833a62Smarkadams4     } else {
789272833a62Smarkadams4       const PetscScalar *vals;
789372833a62Smarkadams4       const PetscInt    *idx;
789472833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
789572833a62Smarkadams4     old_bs:
789672833a62Smarkadams4       /*
789772833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
789872833a62Smarkadams4        */
789972833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
790032603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
790172833a62Smarkadams4       if (isseqaij) {
790272833a62Smarkadams4         PetscInt max_d_nnz;
79036497c311SBarry Smith 
790472833a62Smarkadams4         /*
790572833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
790672833a62Smarkadams4          */
790772833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
790872833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
790972833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
791048a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
791172833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
791272833a62Smarkadams4       } else if (ismpiaij) {
791372833a62Smarkadams4         Mat             Daij, Oaij;
791472833a62Smarkadams4         const PetscInt *garray;
791572833a62Smarkadams4         PetscInt        max_d_nnz;
79166497c311SBarry Smith 
791772833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
791872833a62Smarkadams4         /*
791972833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
792072833a62Smarkadams4          */
792172833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
792272833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
792372833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
792448a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792572833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792672833a62Smarkadams4         /*
792772833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
792872833a62Smarkadams4          */
792972833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
793072833a62Smarkadams4           o_nnz[jj] = 0;
793172833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
793272833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
793372833a62Smarkadams4             o_nnz[jj] += ncols;
793472833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
793572833a62Smarkadams4           }
793672833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
793772833a62Smarkadams4         }
793872833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
793972833a62Smarkadams4       /* get scalar copy (norms) of matrix */
794072833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
794172833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
794272833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
794372833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
794472833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79456497c311SBarry Smith 
794672833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
794772833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
794872833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
794972833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79506497c311SBarry Smith 
795172833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
795272833a62Smarkadams4         }
795372833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
795472833a62Smarkadams4       }
795572833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
795672833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
795772833a62Smarkadams4     }
795872833a62Smarkadams4   } else {
79592d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79602d776b49SBarry Smith     else {
79612d776b49SBarry Smith       Gmat = Amat;
79622d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79632d776b49SBarry Smith     }
79649371c9d4SSatish Balay     if (isseqaij) {
79659371c9d4SSatish Balay       a = Gmat;
79669371c9d4SSatish Balay       b = NULL;
79679371c9d4SSatish Balay     } else {
796872833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79699371c9d4SSatish Balay       a             = d->A;
79709371c9d4SSatish Balay       b             = d->B;
797172833a62Smarkadams4     }
79722d776b49SBarry Smith     if (filter >= 0 || scale) {
79732d776b49SBarry Smith       /* take absolute value of each entry */
797472833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
797572833a62Smarkadams4         MatInfo      info;
797672833a62Smarkadams4         PetscScalar *avals;
79776497c311SBarry Smith 
797872833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
797972833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
798072833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
798172833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
798272833a62Smarkadams4       }
798372833a62Smarkadams4     }
79842d776b49SBarry Smith   }
798572833a62Smarkadams4   if (symmetrize) {
7986b94d7dedSBarry Smith     PetscBool isset, issym;
79876497c311SBarry Smith 
7988b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
7989b94d7dedSBarry Smith     if (!isset || !issym) {
799072833a62Smarkadams4       Mat matTrans;
79916497c311SBarry Smith 
799272833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
79931fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
799472833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
799572833a62Smarkadams4     }
799672833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
79972d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
799872833a62Smarkadams4   if (scale) {
799972833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
800072833a62Smarkadams4     Vec diag;
80016497c311SBarry Smith 
800272833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
800372833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
800472833a62Smarkadams4     PetscCall(VecReciprocal(diag));
800572833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
800672833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
800772833a62Smarkadams4     PetscCall(VecDestroy(&diag));
800872833a62Smarkadams4   }
800972833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80102d776b49SBarry Smith   if (filter >= 0) {
80112ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80122ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80132d776b49SBarry Smith   }
801472833a62Smarkadams4   *a_Gmat = Gmat;
80153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
801672833a62Smarkadams4 }
801772833a62Smarkadams4 
801803db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype)
801903db1824SAlex Lindsay {
802003db1824SAlex Lindsay   Mat_MPIAIJ  *mpiaij = (Mat_MPIAIJ *)A->data;
802103db1824SAlex Lindsay   PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST;
802203db1824SAlex Lindsay 
802303db1824SAlex Lindsay   PetscFunctionBegin;
802403db1824SAlex Lindsay   if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD));
802503db1824SAlex Lindsay   if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO));
802603db1824SAlex Lindsay   *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST;
802703db1824SAlex Lindsay   PetscFunctionReturn(PETSC_SUCCESS);
802803db1824SAlex Lindsay }
802903db1824SAlex Lindsay 
803072833a62Smarkadams4 /*
803198921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
803298921bdaSJacob Faibussowitsch */
803398921bdaSJacob Faibussowitsch 
803498921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80359566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80369566063dSJacob Faibussowitsch #undef PetscCall
80379371c9d4SSatish Balay #define PetscCall(...) \
80389371c9d4SSatish Balay   do { \
80395f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804098921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
804198921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
804298921bdaSJacob Faibussowitsch       return; \
804398921bdaSJacob Faibussowitsch     } \
804498921bdaSJacob Faibussowitsch   } while (0)
804598921bdaSJacob Faibussowitsch 
804698921bdaSJacob Faibussowitsch #undef SETERRQ
80479371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80489371c9d4SSatish Balay   do { \
804998921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805098921bdaSJacob Faibussowitsch     return; \
805198921bdaSJacob Faibussowitsch   } while (0)
805298921bdaSJacob Faibussowitsch 
805398921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
805498921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
805598921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
805698921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
805798921bdaSJacob Faibussowitsch #else
805898921bdaSJacob Faibussowitsch #endif
8059d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8060d71ae5a4SJacob Faibussowitsch {
806198921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
806298921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
806398921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
806498921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
806598921bdaSJacob Faibussowitsch   PetscScalar value;
806698921bdaSJacob Faibussowitsch 
806798921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
806898921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80695f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807098921bdaSJacob Faibussowitsch   {
807198921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
807298921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
807398921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
807498921bdaSJacob Faibussowitsch 
807598921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
807698921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
807798921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
807898921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
807998921bdaSJacob Faibussowitsch     MatScalar  *aa;
8080f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
808198921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
808298921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
808398921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
808498921bdaSJacob Faibussowitsch     MatScalar  *ba;
808598921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
808698921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
808798921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
808898921bdaSJacob Faibussowitsch 
808998921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809098921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
809198921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
809298921bdaSJacob Faibussowitsch 
809398921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80949566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
809698921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
809798921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
80986bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
809998921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810098921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
810198921bdaSJacob Faibussowitsch         lastcol1 = -1;
810298921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
810398921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
810498921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
810598921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
810698921bdaSJacob Faibussowitsch         low1     = 0;
810798921bdaSJacob Faibussowitsch         high1    = nrow1;
810898921bdaSJacob Faibussowitsch         lastcol2 = -1;
810998921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811098921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
811198921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
811298921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
811398921bdaSJacob Faibussowitsch         low2     = 0;
811498921bdaSJacob Faibussowitsch         high2    = nrow2;
811598921bdaSJacob Faibussowitsch 
811698921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
811798921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
811898921bdaSJacob Faibussowitsch           else value = v[i + j * m];
811998921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812098921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
812198921bdaSJacob Faibussowitsch             col = in[j] - cstart;
812298921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
812398921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
812498921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
812563a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
812698921bdaSJacob Faibussowitsch           } else {
812798921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
812848a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
812998921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8130eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
813198921bdaSJacob Faibussowitsch               col--;
813298921bdaSJacob Faibussowitsch #else
813398921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
813498921bdaSJacob Faibussowitsch #endif
8135f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8136eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
813798921bdaSJacob Faibussowitsch                 col = in[j];
813898921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
813998921bdaSJacob Faibussowitsch                 B        = aij->B;
814098921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81419371c9d4SSatish Balay                 bimax    = b->imax;
81429371c9d4SSatish Balay                 bi       = b->i;
81439371c9d4SSatish Balay                 bilen    = b->ilen;
81449371c9d4SSatish Balay                 bj       = b->j;
814598921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
814698921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
814798921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
814898921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
814998921bdaSJacob Faibussowitsch                 low2     = 0;
815098921bdaSJacob Faibussowitsch                 high2    = nrow2;
815198921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
815298921bdaSJacob Faibussowitsch                 ba       = b->a;
815398921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
815498921bdaSJacob Faibussowitsch               }
815598921bdaSJacob Faibussowitsch             } else col = in[j];
815698921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
815798921bdaSJacob Faibussowitsch           }
815898921bdaSJacob Faibussowitsch         }
815998921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816098921bdaSJacob Faibussowitsch         if (roworiented) {
81619566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816298921bdaSJacob Faibussowitsch         } else {
81639566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816498921bdaSJacob Faibussowitsch         }
816598921bdaSJacob Faibussowitsch       }
816698921bdaSJacob Faibussowitsch     }
81679566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81689566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
816998921bdaSJacob Faibussowitsch   }
817098921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
817198921bdaSJacob Faibussowitsch }
817272833a62Smarkadams4 
817398921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
817498921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
817598921bdaSJacob Faibussowitsch  * original definitions */
81769566063dSJacob Faibussowitsch #undef PetscCall
817798921bdaSJacob Faibussowitsch #undef SETERRQ
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