1cb512458SBarry Smith #ifndef lint 2*80b4ade8SLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.63 1995/08/15 20:28:20 bsmith Exp curfman $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1744a69424SLois Curfman McInnes Mat_AIJ *B = (Mat_AIJ*) aij->B->data; 189e25ed09SBarry Smith int n = B->n,i; 1978b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 20464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 2178b31e54SBarry Smith PETSCMEMSET(aij->colmap,0,aij->N*sizeof(int)); 22abc0e9e4SLois Curfman McInnes for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1; 239e25ed09SBarry Smith return 0; 249e25ed09SBarry Smith } 259e25ed09SBarry Smith 262493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 272493cbb0SBarry Smith 2851c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 29299609e3SLois Curfman McInnes { 30299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 31299609e3SLois Curfman McInnes int ierr; 32299609e3SLois Curfman McInnes if (aij->numtids == 1) { 3351c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 34299609e3SLois Curfman McInnes } else 35bbb6d6a8SBarry Smith SETERRQ(1,"MatGetReordering_MPIAIJ: not yet supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 431eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 441eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 458a729477SBarry Smith 4607a0e7adSLois Curfman McInnes if (aij->insertmode != NOTSETVALUES && aij->insertmode != addv) { 47bbb6d6a8SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:You cannot mix inserts and adds"); 488a729477SBarry Smith } 491eb62cbbSBarry Smith aij->insertmode = addv; 508a729477SBarry Smith for ( i=0; i<m; i++ ) { 51bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 52bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 531eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 541eb62cbbSBarry Smith row = idxm[i] - rstart; 551eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 56bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 57bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 581eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 591eb62cbbSBarry Smith col = idxn[j] - cstart; 6078b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 611eb62cbbSBarry Smith } 621eb62cbbSBarry Smith else { 63d6dfbf8fSBarry Smith if (aij->assembled) { 64b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 659e25ed09SBarry Smith col = aij->colmap[idxn[j]] - 1; 66b7c46309SBarry Smith if (col < 0 && !((Mat_AIJ*)(aij->A->data))->nonew) { 672493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 682493cbb0SBarry Smith col = idxn[j]; 69d6dfbf8fSBarry Smith } 709e25ed09SBarry Smith } 719e25ed09SBarry Smith else col = idxn[j]; 7278b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 731eb62cbbSBarry Smith } 741eb62cbbSBarry Smith } 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith else { 77dbd7a890SLois Curfman McInnes ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv); 7878b31e54SBarry Smith CHKERRQ(ierr); 791eb62cbbSBarry Smith } 808a729477SBarry Smith } 818a729477SBarry Smith return 0; 828a729477SBarry Smith } 838a729477SBarry Smith 848a729477SBarry Smith /* 851eb62cbbSBarry Smith the assembly code is a lot like the code for vectors, we should 861eb62cbbSBarry Smith sometime derive a single assembly code that can be used for 871eb62cbbSBarry Smith either case. 888a729477SBarry Smith */ 898a729477SBarry Smith 90fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 918a729477SBarry Smith { 9244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 93d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 946abc6512SBarry Smith int numtids = aij->numtids, *owners = aij->rowners; 951eb62cbbSBarry Smith int mytid = aij->mytid; 961eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 976abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 985392566eSBarry Smith int tag = mat->tag, *owner,*starts,count,ierr; 991eb62cbbSBarry Smith InsertMode addv; 1001eb62cbbSBarry Smith Scalar *rvalues,*svalues; 1011eb62cbbSBarry Smith 1021eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 10328988994SBarry Smith MPI_Allreduce((void *) &aij->insertmode,(void *) &addv,1,MPI_INT, 1041eb62cbbSBarry Smith MPI_BOR,comm); 1059d00d63dSBarry Smith if (addv == (ADDVALUES|INSERTVALUES)) { 106bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1071eb62cbbSBarry Smith } 1081eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1091eb62cbbSBarry Smith 1101eb62cbbSBarry Smith /* first count number of contributors to each processor */ 11178b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 11278b31e54SBarry Smith PETSCMEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 11378b31e54SBarry Smith owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1141eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1151eb62cbbSBarry Smith idx = aij->stash.idx[i]; 1161eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 1171eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1181eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1198a729477SBarry Smith } 1208a729477SBarry Smith } 1218a729477SBarry Smith } 1221eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 1231eb62cbbSBarry Smith 1241eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 12578b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 1261eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 1271eb62cbbSBarry Smith nreceives = work[mytid]; 1281eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 1291eb62cbbSBarry Smith nmax = work[mytid]; 13078b31e54SBarry Smith PETSCFREE(work); 1311eb62cbbSBarry Smith 1321eb62cbbSBarry Smith /* post receives: 1331eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1341eb62cbbSBarry Smith (global index,value) we store the global index as a double 135d6dfbf8fSBarry Smith to simplify the message passing. 1361eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1371eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1381eb62cbbSBarry Smith this is a lot of wasted space. 1391eb62cbbSBarry Smith 1401eb62cbbSBarry Smith 1411eb62cbbSBarry Smith This could be done better. 1421eb62cbbSBarry Smith */ 14378b31e54SBarry Smith rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 14478b31e54SBarry Smith CHKPTRQ(rvalues); 14578b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request)); 14678b31e54SBarry Smith CHKPTRQ(recv_waits); 1471eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 148c60448a5SBarry Smith MPI_Irecv((void *)(rvalues+3*nmax*i),3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1491eb62cbbSBarry Smith comm,recv_waits+i); 1501eb62cbbSBarry Smith } 1511eb62cbbSBarry Smith 1521eb62cbbSBarry Smith /* do sends: 1531eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1541eb62cbbSBarry Smith the ith processor 1551eb62cbbSBarry Smith */ 15678b31e54SBarry Smith svalues = (Scalar *) PETSCMALLOC( 3*(aij->stash.n+1)*sizeof(Scalar) ); 15778b31e54SBarry Smith CHKPTRQ(svalues); 15878b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 15978b31e54SBarry Smith CHKPTRQ(send_waits); 16078b31e54SBarry Smith starts = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(starts); 1611eb62cbbSBarry Smith starts[0] = 0; 1621eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1641eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1651eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1661eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1671eb62cbbSBarry Smith } 16878b31e54SBarry Smith PETSCFREE(owner); 1691eb62cbbSBarry Smith starts[0] = 0; 1701eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1711eb62cbbSBarry Smith count = 0; 1721eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 1731eb62cbbSBarry Smith if (procs[i]) { 174c60448a5SBarry Smith MPI_Isend((void*)(svalues+3*starts[i]),3*nprocs[i],MPIU_SCALAR,i,tag, 1751eb62cbbSBarry Smith comm,send_waits+count++); 1761eb62cbbSBarry Smith } 1771eb62cbbSBarry Smith } 17878b31e54SBarry Smith PETSCFREE(starts); PETSCFREE(nprocs); 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith /* Free cache space */ 18178b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1821eb62cbbSBarry Smith 1831eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1841eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1851eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1861eb62cbbSBarry Smith aij->rmax = nmax; 1871eb62cbbSBarry Smith 1881eb62cbbSBarry Smith return 0; 1891eb62cbbSBarry Smith } 19044a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1911eb62cbbSBarry Smith 192fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1931eb62cbbSBarry Smith { 1941eb62cbbSBarry Smith int ierr; 19544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1961eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 1976abc6512SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n; 1982493cbb0SBarry Smith int row,col,other_disassembled; 1991eb62cbbSBarry Smith Scalar *values,val; 2001eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 2011eb62cbbSBarry Smith 2021eb62cbbSBarry Smith /* wait on receives */ 2031eb62cbbSBarry Smith while (count) { 204d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 2051eb62cbbSBarry Smith /* unpack receives into our local space */ 206d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 207c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2081eb62cbbSBarry Smith n = n/3; 2091eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2101eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2111eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2121eb62cbbSBarry Smith val = values[3*i+2]; 2131eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2141eb62cbbSBarry Smith col -= aij->cstart; 2151eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2161eb62cbbSBarry Smith } 2171eb62cbbSBarry Smith else { 218d6dfbf8fSBarry Smith if (aij->assembled) { 219b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 2209e25ed09SBarry Smith col = aij->colmap[col] - 1; 221b7c46309SBarry Smith if (col < 0 && !((Mat_AIJ*)(aij->A->data))->nonew) { 2222493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2232493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 224d6dfbf8fSBarry Smith } 2259e25ed09SBarry Smith } 2261eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2271eb62cbbSBarry Smith } 2281eb62cbbSBarry Smith } 2291eb62cbbSBarry Smith count--; 2301eb62cbbSBarry Smith } 23178b31e54SBarry Smith PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues); 2321eb62cbbSBarry Smith 2331eb62cbbSBarry Smith /* wait on sends */ 2341eb62cbbSBarry Smith if (aij->nsends) { 23578b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC( aij->nsends*sizeof(MPI_Status) ); 23678b31e54SBarry Smith CHKPTRQ(send_status); 2371eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 23878b31e54SBarry Smith PETSCFREE(send_status); 2391eb62cbbSBarry Smith } 24078b31e54SBarry Smith PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues); 2411eb62cbbSBarry Smith 24207a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 24378b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 24478b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2451eb62cbbSBarry Smith 2462493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2472493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 2482493cbb0SBarry Smith MPI_Allreduce((void *) &aij->assembled,(void *) &other_disassembled,1, 2492493cbb0SBarry Smith MPI_INT,MPI_PROD,mat->comm); 2502493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2512493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2522493cbb0SBarry Smith } 2532493cbb0SBarry Smith 2545e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 25578b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 256d6dfbf8fSBarry Smith aij->assembled = 1; 2575e42470aSBarry Smith } 25878b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25978b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2605e42470aSBarry Smith 2618a729477SBarry Smith return 0; 2628a729477SBarry Smith } 2638a729477SBarry Smith 2642ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2651eb62cbbSBarry Smith { 26644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 267dbd7a890SLois Curfman McInnes int ierr; 26878b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26978b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2701eb62cbbSBarry Smith return 0; 2711eb62cbbSBarry Smith } 2721eb62cbbSBarry Smith 2731eb62cbbSBarry Smith /* again this uses the same basic stratagy as in the assembly and 2741eb62cbbSBarry Smith scatter create routines, we should try to do it systemamatically 2751eb62cbbSBarry Smith if we can figure out the proper level of generality. */ 2761eb62cbbSBarry Smith 2771eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2781eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2791eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2801eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2811eb62cbbSBarry Smith routine. 2821eb62cbbSBarry Smith */ 28344a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2841eb62cbbSBarry Smith { 28544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 2861eb62cbbSBarry Smith int i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids; 2876abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 2881eb62cbbSBarry Smith int nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid; 2895392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 290d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 291d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2921eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2931eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2941eb62cbbSBarry Smith IS istmp; 2951eb62cbbSBarry Smith 296c8f67822SLois Curfman McInnes if (!l->assembled) 29778b31e54SBarry Smith SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix first"); 29878b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 29978b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 3001eb62cbbSBarry Smith 3011eb62cbbSBarry Smith /* first count number of contributors to each processor */ 30278b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 30378b31e54SBarry Smith PETSCMEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 30478b31e54SBarry Smith owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 3051eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3061eb62cbbSBarry Smith idx = rows[i]; 3071eb62cbbSBarry Smith found = 0; 3081eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 3091eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3101eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 3111eb62cbbSBarry Smith } 3121eb62cbbSBarry Smith } 313bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3141eb62cbbSBarry Smith } 3151eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 3161eb62cbbSBarry Smith 3171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 31878b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 3191eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 3201eb62cbbSBarry Smith nrecvs = work[mytid]; 3211eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 3221eb62cbbSBarry Smith nmax = work[mytid]; 32378b31e54SBarry Smith PETSCFREE(work); 3241eb62cbbSBarry Smith 3251eb62cbbSBarry Smith /* post receives: */ 32678b31e54SBarry Smith rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 32778b31e54SBarry Smith CHKPTRQ(rvalues); 32878b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request)); 32978b31e54SBarry Smith CHKPTRQ(recv_waits); 3301eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3311eb62cbbSBarry Smith MPI_Irecv((void *)(rvalues+nmax*i),nmax,MPI_INT,MPI_ANY_SOURCE,tag, 3321eb62cbbSBarry Smith comm,recv_waits+i); 3331eb62cbbSBarry Smith } 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith /* do sends: 3361eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3371eb62cbbSBarry Smith the ith processor 3381eb62cbbSBarry Smith */ 33978b31e54SBarry Smith svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 34078b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 34178b31e54SBarry Smith CHKPTRQ(send_waits); 34278b31e54SBarry Smith starts = (int *) PETSCMALLOC( (numtids+1)*sizeof(int) ); CHKPTRQ(starts); 3431eb62cbbSBarry Smith starts[0] = 0; 3441eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3451eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3461eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3471eb62cbbSBarry Smith } 3481eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3491eb62cbbSBarry Smith 3501eb62cbbSBarry Smith starts[0] = 0; 3511eb62cbbSBarry Smith for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3521eb62cbbSBarry Smith count = 0; 3531eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 3541eb62cbbSBarry Smith if (procs[i]) { 3551eb62cbbSBarry Smith MPI_Isend((void*)(svalues+starts[i]),nprocs[i],MPI_INT,i,tag, 3561eb62cbbSBarry Smith comm,send_waits+count++); 3571eb62cbbSBarry Smith } 3581eb62cbbSBarry Smith } 35978b31e54SBarry Smith PETSCFREE(starts); 3601eb62cbbSBarry Smith 3611eb62cbbSBarry Smith base = owners[mytid]; 3621eb62cbbSBarry Smith 3631eb62cbbSBarry Smith /* wait on receives */ 36478b31e54SBarry Smith lens = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3651eb62cbbSBarry Smith source = lens + nrecvs; 3661eb62cbbSBarry Smith count = nrecvs; slen = 0; 3671eb62cbbSBarry Smith while (count) { 368d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3691eb62cbbSBarry Smith /* unpack receives into our local space */ 3701eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 371d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 372d6dfbf8fSBarry Smith lens[imdex] = n; 3731eb62cbbSBarry Smith slen += n; 3741eb62cbbSBarry Smith count--; 3751eb62cbbSBarry Smith } 37678b31e54SBarry Smith PETSCFREE(recv_waits); 3771eb62cbbSBarry Smith 3781eb62cbbSBarry Smith /* move the data into the send scatter */ 37978b31e54SBarry Smith lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3801eb62cbbSBarry Smith count = 0; 3811eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3821eb62cbbSBarry Smith values = rvalues + i*nmax; 3831eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3841eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3851eb62cbbSBarry Smith } 3861eb62cbbSBarry Smith } 38778b31e54SBarry Smith PETSCFREE(rvalues); PETSCFREE(lens); 38878b31e54SBarry Smith PETSCFREE(owner); PETSCFREE(nprocs); 3891eb62cbbSBarry Smith 3901eb62cbbSBarry Smith /* actually zap the local rows */ 3916b5873e3SBarry Smith ierr = ISCreateSequential(MPI_COMM_SELF,slen,lrows,&istmp); 392464493b3SBarry Smith PLogObjectParent(A,istmp); 39378b31e54SBarry Smith CHKERRQ(ierr); PETSCFREE(lrows); 39478b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 39578b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 39678b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3971eb62cbbSBarry Smith 3981eb62cbbSBarry Smith /* wait on sends */ 3991eb62cbbSBarry Smith if (nsends) { 40078b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC( nsends*sizeof(MPI_Status) ); 40178b31e54SBarry Smith CHKPTRQ(send_status); 4021eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 40378b31e54SBarry Smith PETSCFREE(send_status); 4041eb62cbbSBarry Smith } 40578b31e54SBarry Smith PETSCFREE(send_waits); PETSCFREE(svalues); 4061eb62cbbSBarry Smith 4071eb62cbbSBarry Smith 4081eb62cbbSBarry Smith return 0; 4091eb62cbbSBarry Smith } 4101eb62cbbSBarry Smith 41144a69424SLois Curfman McInnes static int MatMult_MPIAIJ(Mat aijin,Vec xx,Vec yy) 4121eb62cbbSBarry Smith { 41344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 4141eb62cbbSBarry Smith int ierr; 41578b31e54SBarry Smith if (!aij->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first"); 41606be10caSBarry Smith ierr = VecScatterBegin(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 41778b31e54SBarry Smith CHKERRQ(ierr); 41878b31e54SBarry Smith ierr = MatMult(aij->A,xx,yy); CHKERRQ(ierr); 41906be10caSBarry Smith ierr = VecScatterEnd(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 42078b31e54SBarry Smith CHKERRQ(ierr); 42178b31e54SBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,yy,yy); CHKERRQ(ierr); 4221eb62cbbSBarry Smith return 0; 4231eb62cbbSBarry Smith } 4241eb62cbbSBarry Smith 42544a69424SLois Curfman McInnes static int MatMultAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 426da3a660dSBarry Smith { 42744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 428da3a660dSBarry Smith int ierr; 42978b31e54SBarry Smith if (!aij->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first"); 43006be10caSBarry Smith ierr = VecScatterBegin(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 43178b31e54SBarry Smith CHKERRQ(ierr); 43278b31e54SBarry Smith ierr = MatMultAdd(aij->A,xx,yy,zz); CHKERRQ(ierr); 43306be10caSBarry Smith ierr = VecScatterEnd(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 43478b31e54SBarry Smith CHKERRQ(ierr); 43578b31e54SBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,zz,zz); CHKERRQ(ierr); 436da3a660dSBarry Smith return 0; 437da3a660dSBarry Smith } 438da3a660dSBarry Smith 43944a69424SLois Curfman McInnes static int MatMultTrans_MPIAIJ(Mat aijin,Vec xx,Vec yy) 440da3a660dSBarry Smith { 44144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 442da3a660dSBarry Smith int ierr; 443da3a660dSBarry Smith 44444a69424SLois Curfman McInnes if (!aij->assembled) 44578b31e54SBarry Smith SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix first"); 446da3a660dSBarry Smith /* do nondiagonal part */ 44778b31e54SBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 44906be10caSBarry Smith ierr = VecScatterBegin(aij->lvec,yy,ADDVALUES, 45078b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 45278b31e54SBarry Smith ierr = MatMultTrans(aij->A,xx,yy); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 45606be10caSBarry Smith ierr = VecScatterEnd(aij->lvec,yy,ADDVALUES, 45778b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 46144a69424SLois Curfman McInnes static int MatMultTransAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 462da3a660dSBarry Smith { 46344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 464da3a660dSBarry Smith int ierr; 465da3a660dSBarry Smith 46644a69424SLois Curfman McInnes if (!aij->assembled) 46778b31e54SBarry Smith SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix first"); 468da3a660dSBarry Smith /* do nondiagonal part */ 46978b31e54SBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERRQ(ierr); 470da3a660dSBarry Smith /* send it on its way */ 47106be10caSBarry Smith ierr = VecScatterBegin(aij->lvec,zz,ADDVALUES, 47278b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 473da3a660dSBarry Smith /* do local part */ 47478b31e54SBarry Smith ierr = MatMultTransAdd(aij->A,xx,yy,zz); CHKERRQ(ierr); 475da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 476da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 477da3a660dSBarry Smith /* but is not perhaps always true. */ 47806be10caSBarry Smith ierr = VecScatterEnd(aij->lvec,zz,ADDVALUES, 47978b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 480da3a660dSBarry Smith return 0; 481da3a660dSBarry Smith } 482da3a660dSBarry Smith 4831eb62cbbSBarry Smith /* 4841eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4851eb62cbbSBarry Smith diagonal block 4861eb62cbbSBarry Smith */ 487d1710a03SLois Curfman McInnes static int MatGetDiagonal_MPIAIJ(Mat Ain,Vec v) 4881eb62cbbSBarry Smith { 48944a69424SLois Curfman McInnes Mat_MPIAIJ *A = (Mat_MPIAIJ *) Ain->data; 49078b31e54SBarry Smith if (!A->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix first"); 4911eb62cbbSBarry Smith return MatGetDiagonal(A->A,v); 4921eb62cbbSBarry Smith } 4931eb62cbbSBarry Smith 49444a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4951eb62cbbSBarry Smith { 4961eb62cbbSBarry Smith Mat mat = (Mat) obj; 49744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4981eb62cbbSBarry Smith int ierr; 499a5a9c739SBarry Smith #if defined(PETSC_LOG) 500a5a9c739SBarry Smith PLogObjectState(obj,"Rows %d Cols %d",aij->M,aij->N); 501a5a9c739SBarry Smith #endif 50278b31e54SBarry Smith PETSCFREE(aij->rowners); 50378b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 50478b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 50578b31e54SBarry Smith if (aij->colmap) PETSCFREE(aij->colmap); 50678b31e54SBarry Smith if (aij->garray) PETSCFREE(aij->garray); 5071eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 5081eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 50978b31e54SBarry Smith PETSCFREE(aij); 510a5a9c739SBarry Smith PLogObjectDestroy(mat); 511a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 5121eb62cbbSBarry Smith return 0; 5131eb62cbbSBarry Smith } 5147857610eSBarry Smith #include "draw.h" 515ee50ffe9SBarry Smith #include "pviewer.h" 516ee50ffe9SBarry Smith 51744a69424SLois Curfman McInnes static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 5181eb62cbbSBarry Smith { 5191eb62cbbSBarry Smith Mat mat = (Mat) obj; 52044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5211eb62cbbSBarry Smith int ierr; 522d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 5231eb62cbbSBarry Smith 52478b31e54SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix first"); 525154123eaSLois Curfman McInnes if (!viewer) { /* so that viewers may be used from debuggers */ 526154123eaSLois Curfman McInnes viewer = STDOUT_VIEWER; vobj = (PetscObject) viewer; 527154123eaSLois Curfman McInnes } 528ab254492SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 5297857610eSBarry Smith if (vobj->cookie == VIEWER_COOKIE && vobj->type == FILE_VIEWER) { 5304a0ce102SLois Curfman McInnes FILE *fd = ViewerFileGetPointer_Private(viewer); 5317f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 532d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 5331eb62cbbSBarry Smith aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5341eb62cbbSBarry Smith aij->cend); 53578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 53678b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 537d13ab20cSBarry Smith fflush(fd); 5387f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 539d13ab20cSBarry Smith } 5407857610eSBarry Smith else if ((vobj->cookie == VIEWER_COOKIE && vobj->type == FILES_VIEWER) || 5417857610eSBarry Smith vobj->cookie == DRAW_COOKIE) { 54295373324SBarry Smith int numtids = aij->numtids, mytid = aij->mytid; 54395373324SBarry Smith if (numtids == 1) { 54478b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 54595373324SBarry Smith } 54695373324SBarry Smith else { 54795373324SBarry Smith /* assemble the entire matrix onto first processor. */ 54895373324SBarry Smith Mat A; 5492ee70a88SLois Curfman McInnes Mat_AIJ *Aloc; 5502eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 55195373324SBarry Smith Scalar *a; 5522ee70a88SLois Curfman McInnes 55395373324SBarry Smith if (!mytid) { 55495373324SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A); 55595373324SBarry Smith } 55695373324SBarry Smith else { 55795373324SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A); 55895373324SBarry Smith } 559464493b3SBarry Smith PLogObjectParent(mat,A); 56078b31e54SBarry Smith CHKERRQ(ierr); 56195373324SBarry Smith 56295373324SBarry Smith /* copy over the A part */ 5632ee70a88SLois Curfman McInnes Aloc = (Mat_AIJ*) aij->A->data; 5642ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 56595373324SBarry Smith row = aij->rstart; 566b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] += aij->cstart - 1;} 56795373324SBarry Smith for ( i=0; i<m; i++ ) { 56807a0e7adSLois Curfman McInnes ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERTVALUES); 56978b31e54SBarry Smith CHKERRQ(ierr); 57095373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 57195373324SBarry Smith } 5722ee70a88SLois Curfman McInnes aj = Aloc->j; 573b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] -= aij->cstart - 1;} 57495373324SBarry Smith 57595373324SBarry Smith /* copy over the B part */ 5762ee70a88SLois Curfman McInnes Aloc = (Mat_AIJ*) aij->B->data; 5772ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 57895373324SBarry Smith row = aij->rstart; 57978b31e54SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 580b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {cols[i] = aij->garray[aj[i]-1];} 58195373324SBarry Smith for ( i=0; i<m; i++ ) { 58207a0e7adSLois Curfman McInnes ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERTVALUES); 58378b31e54SBarry Smith CHKERRQ(ierr); 58495373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 58595373324SBarry Smith } 58678b31e54SBarry Smith PETSCFREE(ct); 58778b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 58878b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 58995373324SBarry Smith if (!mytid) { 59078b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 59195373324SBarry Smith } 59278b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 59395373324SBarry Smith } 59495373324SBarry Smith } 5951eb62cbbSBarry Smith return 0; 5961eb62cbbSBarry Smith } 5971eb62cbbSBarry Smith 598*80b4ade8SLois Curfman McInnes extern int MatMarkDiag_AIJ(Mat); 5991eb62cbbSBarry Smith /* 6001eb62cbbSBarry Smith This has to provide several versions. 6011eb62cbbSBarry Smith 6021eb62cbbSBarry Smith 1) per sequential 6031eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6041eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 605d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6061eb62cbbSBarry Smith */ 607fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 608fc76ce87SLois Curfman McInnes double shift,int its,Vec xx) 6098a729477SBarry Smith { 61044a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 611d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 61244a69424SLois Curfman McInnes Mat_AIJ *A = (Mat_AIJ *) AA->data, *B = (Mat_AIJ *)BB->data; 6136abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6146abc6512SBarry Smith int ierr,*idx, *diag; 6156abc6512SBarry Smith int n = mat->n, m = mat->m, i; 616da3a660dSBarry Smith Vec tt; 6178a729477SBarry Smith 61878b31e54SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix first"); 6191eb62cbbSBarry Smith 620d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 621d6dfbf8fSBarry Smith xs = x -1; /* shift by one for index start of 1 */ 622da3a660dSBarry Smith ls--; 623*80b4ade8SLois Curfman McInnes if (!A->diag) {if ((ierr = MatMarkDiag_AIJ(AA))) return ierr;} 624d6dfbf8fSBarry Smith diag = A->diag; 625acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 62642f8db3fSLois Curfman McInnes SETERRQ(1,"MatRelax_MPIAIJ:Option not yet supported"); 627acb40c82SBarry Smith } 628da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 629da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 630da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 631da3a660dSBarry Smith 632da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 633da3a660dSBarry Smith 634da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 635da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 636da3a660dSBarry Smith is the relaxation factor. 637da3a660dSBarry Smith */ 63878b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 639464493b3SBarry Smith PLogObjectParent(matin,tt); 640da3a660dSBarry Smith VecGetArray(tt,&t); 641da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 642da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 643da3a660dSBarry Smith VecSet(&zero,mat->lvec); 64406be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 64578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 646da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 647da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 648da3a660dSBarry Smith idx = A->j + diag[i]; 649da3a660dSBarry Smith v = A->a + diag[i]; 650da3a660dSBarry Smith sum = b[i]; 651da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 652da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 653da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 654da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 655da3a660dSBarry Smith v = B->a + B->i[i] - 1; 656da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 657da3a660dSBarry Smith x[i] = omega*(sum/d); 658da3a660dSBarry Smith } 659edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 66078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 661da3a660dSBarry Smith 662da3a660dSBarry Smith /* t = b - (2*E - D)x */ 663da3a660dSBarry Smith v = A->a; 664da3a660dSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ - 1])*x[i]; } 665da3a660dSBarry Smith 666da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 667da3a660dSBarry Smith ts = t - 1; /* shifted by one for index start of a or mat->j*/ 668da3a660dSBarry Smith diag = A->diag; 669da3a660dSBarry Smith VecSet(&zero,mat->lvec); 67006be10caSBarry Smith ierr = VecPipelineBegin(tt,mat->lvec,INSERTVALUES,PIPELINEDOWN, 67178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 672da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 673da3a660dSBarry Smith n = diag[i] - A->i[i]; 674da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 675da3a660dSBarry Smith v = A->a + A->i[i] - 1; 676da3a660dSBarry Smith sum = t[i]; 677da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 678da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 679da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 680da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 681da3a660dSBarry Smith v = B->a + B->i[i] - 1; 682da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 683da3a660dSBarry Smith t[i] = omega*(sum/d); 684da3a660dSBarry Smith } 685edd2f0e1SBarry Smith ierr = VecPipelineEnd(tt,mat->lvec,INSERTVALUES,PIPELINEDOWN, 68678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 687da3a660dSBarry Smith /* x = x + t */ 688da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 689da3a660dSBarry Smith VecDestroy(tt); 690da3a660dSBarry Smith return 0; 691da3a660dSBarry Smith } 692da3a660dSBarry Smith 6931eb62cbbSBarry Smith 694d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 695da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 696da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 697da3a660dSBarry Smith } 698da3a660dSBarry Smith else { 69906be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 70078b31e54SBarry Smith CHKERRQ(ierr); 70106be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 70278b31e54SBarry Smith CHKERRQ(ierr); 703da3a660dSBarry Smith } 704d6dfbf8fSBarry Smith while (its--) { 705d6dfbf8fSBarry Smith /* go down through the rows */ 70606be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 70778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 708d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 709d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 710d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 711d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 712d6dfbf8fSBarry Smith sum = b[i]; 713d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 714d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 715d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 716d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 717d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 718d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 719d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 720d6dfbf8fSBarry Smith } 721edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 72278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 723d6dfbf8fSBarry Smith /* come up through the rows */ 72406be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 72578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 726d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 727d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 728d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 729d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 730d6dfbf8fSBarry Smith sum = b[i]; 731d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 732d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 733d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 734d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 735d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 736d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 737d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 738d6dfbf8fSBarry Smith } 739edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 74078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 741d6dfbf8fSBarry Smith } 742d6dfbf8fSBarry Smith } 743d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 744da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 745da3a660dSBarry Smith VecSet(&zero,mat->lvec); 74606be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 74778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 748da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 749da3a660dSBarry Smith n = diag[i] - A->i[i]; 750da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 751da3a660dSBarry Smith v = A->a + A->i[i] - 1; 752da3a660dSBarry Smith sum = b[i]; 753da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 754da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 755da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 756da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 757da3a660dSBarry Smith v = B->a + B->i[i] - 1; 758da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 759da3a660dSBarry Smith x[i] = omega*(sum/d); 760da3a660dSBarry Smith } 761edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 76278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 763da3a660dSBarry Smith its--; 764da3a660dSBarry Smith } 765d6dfbf8fSBarry Smith while (its--) { 76606be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 76778b31e54SBarry Smith CHKERRQ(ierr); 76806be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 76978b31e54SBarry Smith CHKERRQ(ierr); 77006be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 77178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 772d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 773d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 774d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 775d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 776d6dfbf8fSBarry Smith sum = b[i]; 777d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 778d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 779d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 780d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 781d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 782d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 783d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 784d6dfbf8fSBarry Smith } 785edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 78678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 787d6dfbf8fSBarry Smith } 788d6dfbf8fSBarry Smith } 789d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 790da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 791da3a660dSBarry Smith VecSet(&zero,mat->lvec); 79206be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 79378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 794da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 795da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 796da3a660dSBarry Smith idx = A->j + diag[i]; 797da3a660dSBarry Smith v = A->a + diag[i]; 798da3a660dSBarry Smith sum = b[i]; 799da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 800da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 801da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 802da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 803da3a660dSBarry Smith v = B->a + B->i[i] - 1; 804da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 805da3a660dSBarry Smith x[i] = omega*(sum/d); 806da3a660dSBarry Smith } 807edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 80878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 809da3a660dSBarry Smith its--; 810da3a660dSBarry Smith } 811d6dfbf8fSBarry Smith while (its--) { 81206be10caSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERDOWN, 81378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 81406be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERDOWN, 81578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 81606be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 81778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 818d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 819d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 820d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 821d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 822d6dfbf8fSBarry Smith sum = b[i]; 823d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 824d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 825d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 826d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 827d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 828d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 829d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 830d6dfbf8fSBarry Smith } 831edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 83278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 833d6dfbf8fSBarry Smith } 834d6dfbf8fSBarry Smith } 835d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 836da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 837da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 838da3a660dSBarry Smith } 83906be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 84078b31e54SBarry Smith CHKERRQ(ierr); 84106be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 84278b31e54SBarry Smith CHKERRQ(ierr); 843d6dfbf8fSBarry Smith while (its--) { 844d6dfbf8fSBarry Smith /* go down through the rows */ 845d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 846d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 847d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 848d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 849d6dfbf8fSBarry Smith sum = b[i]; 850d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 851d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 852d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 853d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 854d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 855d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 856d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 857d6dfbf8fSBarry Smith } 858d6dfbf8fSBarry Smith /* come up through the rows */ 859d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 860d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 861d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 862d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 863d6dfbf8fSBarry Smith sum = b[i]; 864d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 865d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 866d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 867d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 868d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 869d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 870d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 871d6dfbf8fSBarry Smith } 872d6dfbf8fSBarry Smith } 873d6dfbf8fSBarry Smith } 874d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 875da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 876da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 877da3a660dSBarry Smith } 87806be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 87978b31e54SBarry Smith CHKERRQ(ierr); 88006be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 88178b31e54SBarry Smith CHKERRQ(ierr); 882d6dfbf8fSBarry Smith while (its--) { 883d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 884d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 885d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 886d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 887d6dfbf8fSBarry Smith sum = b[i]; 888d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 889d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 890d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 891d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 892d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 893d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 894d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 895d6dfbf8fSBarry Smith } 896d6dfbf8fSBarry Smith } 897d6dfbf8fSBarry Smith } 898d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 899da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 900da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 901da3a660dSBarry Smith } 90206be10caSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL, 90378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 90406be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL, 90578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 906d6dfbf8fSBarry Smith while (its--) { 907d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 908d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 909d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 910d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 911d6dfbf8fSBarry Smith sum = b[i]; 912d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 913d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 914d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 915d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 916d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 917d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 918d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 919d6dfbf8fSBarry Smith } 920d6dfbf8fSBarry Smith } 921d6dfbf8fSBarry Smith } 9228a729477SBarry Smith return 0; 9238a729477SBarry Smith } 924a66be287SLois Curfman McInnes 925fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 926fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 927a66be287SLois Curfman McInnes { 928a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 929a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 930a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 931a66be287SLois Curfman McInnes 93278b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 93378b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 934a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 935a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 936a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 937a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 938a66be287SLois Curfman McInnes MPI_Allreduce((void *) isend,(void *) irecv,3,MPI_INT,MPI_MAX,matin->comm); 939a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 940a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 941a66be287SLois Curfman McInnes MPI_Allreduce((void *) isend,(void *) irecv,3,MPI_INT,MPI_SUM,matin->comm); 942a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 943a66be287SLois Curfman McInnes } 944a66be287SLois Curfman McInnes return 0; 945a66be287SLois Curfman McInnes } 946a66be287SLois Curfman McInnes 947299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 948299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 949299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 950299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 951299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 952299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 953299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 954299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 955299609e3SLois Curfman McInnes 956fc76ce87SLois Curfman McInnes static int MatSetOption_MPIAIJ(Mat aijin,MatOption op) 957c74985f6SBarry Smith { 95844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 959c74985f6SBarry Smith 960c74985f6SBarry Smith if (op == NO_NEW_NONZERO_LOCATIONS) { 961c74985f6SBarry Smith MatSetOption(aij->A,op); 962c74985f6SBarry Smith MatSetOption(aij->B,op); 963c74985f6SBarry Smith } 964c74985f6SBarry Smith else if (op == YES_NEW_NONZERO_LOCATIONS) { 965c74985f6SBarry Smith MatSetOption(aij->A,op); 966c74985f6SBarry Smith MatSetOption(aij->B,op); 967c74985f6SBarry Smith } 968bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 969bbb6d6a8SBarry Smith SETERRQ(1,"MatSetOption_MPIAIJ:Column oriented not supported"); 970c74985f6SBarry Smith return 0; 971c74985f6SBarry Smith } 972c74985f6SBarry Smith 973d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 974c74985f6SBarry Smith { 97544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 976c74985f6SBarry Smith *m = mat->M; *n = mat->N; 977c74985f6SBarry Smith return 0; 978c74985f6SBarry Smith } 979c74985f6SBarry Smith 980d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 981c74985f6SBarry Smith { 98244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 983b7c46309SBarry Smith *m = mat->m; *n = mat->N; 984c74985f6SBarry Smith return 0; 985c74985f6SBarry Smith } 986c74985f6SBarry Smith 987d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 988c74985f6SBarry Smith { 98944a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 990c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 991c74985f6SBarry Smith return 0; 992c74985f6SBarry Smith } 993c74985f6SBarry Smith 99439e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 99539e00950SLois Curfman McInnes { 996154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 997154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 998154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 999154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 100039e00950SLois Curfman McInnes 100139e00950SLois Curfman McInnes if (row < rstart || row >= rend) 1002bbb6d6a8SBarry Smith SETERRQ(1,"MatGetRow_MPIAIJ:Currently you can get only local rows") 1003abc0e9e4SLois Curfman McInnes lrow = row - rstart; 100439e00950SLois Curfman McInnes 1005154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1006154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1007154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 100878b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 100978b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1010154123eaSLois Curfman McInnes nztot = nzA + nzB; 1011154123eaSLois Curfman McInnes 1012154123eaSLois Curfman McInnes if (v || idx) { 1013154123eaSLois Curfman McInnes if (nztot) { 1014154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1015299609e3SLois Curfman McInnes int imark; 101648b35521SBarry Smith if (mat->assembled) { 1017154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 101848b35521SBarry Smith } 1019154123eaSLois Curfman McInnes if (v) { 102078b31e54SBarry Smith *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 102139e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1022154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1023154123eaSLois Curfman McInnes else break; 1024154123eaSLois Curfman McInnes } 1025154123eaSLois Curfman McInnes imark = i; 1026154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1027299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1028154123eaSLois Curfman McInnes } 1029154123eaSLois Curfman McInnes if (idx) { 103078b31e54SBarry Smith *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1031154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1032154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1033154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1034154123eaSLois Curfman McInnes else break; 1035154123eaSLois Curfman McInnes } 1036154123eaSLois Curfman McInnes imark = i; 1037154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1038299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 103939e00950SLois Curfman McInnes } 104039e00950SLois Curfman McInnes } 104139e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1042154123eaSLois Curfman McInnes } 104339e00950SLois Curfman McInnes *nz = nztot; 104478b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 104578b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 104639e00950SLois Curfman McInnes return 0; 104739e00950SLois Curfman McInnes } 104839e00950SLois Curfman McInnes 104939e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 105039e00950SLois Curfman McInnes { 105178b31e54SBarry Smith if (idx) PETSCFREE(*idx); 105278b31e54SBarry Smith if (v) PETSCFREE(*v); 105339e00950SLois Curfman McInnes return 0; 105439e00950SLois Curfman McInnes } 105539e00950SLois Curfman McInnes 1056855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm) 1057855ac2c5SLois Curfman McInnes { 1058855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1059855ac2c5SLois Curfman McInnes int ierr; 1060855ac2c5SLois Curfman McInnes if (aij->numtids == 1) { 106114183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 1062855ac2c5SLois Curfman McInnes } else 1063bbb6d6a8SBarry Smith SETERRQ(1,"MatNorm_MPIAIJ:not yet supported in parallel"); 1064855ac2c5SLois Curfman McInnes return 0; 1065855ac2c5SLois Curfman McInnes } 1066855ac2c5SLois Curfman McInnes 1067b7c46309SBarry Smith static int MatTranspose_MPIAIJ(Mat A,Mat *Bin) 1068b7c46309SBarry Smith { 1069b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1070b7c46309SBarry Smith int ierr; 1071b7c46309SBarry Smith Mat B; 1072b7c46309SBarry Smith Mat_AIJ *Aloc; 1073b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1074b7c46309SBarry Smith Scalar *array; 1075b7c46309SBarry Smith 1076b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1077b7c46309SBarry Smith CHKERRQ(ierr); 1078b7c46309SBarry Smith 1079b7c46309SBarry Smith /* copy over the A part */ 1080b7c46309SBarry Smith Aloc = (Mat_AIJ*) a->A->data; 1081b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1082b7c46309SBarry Smith row = a->rstart; 1083b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] += a->cstart - 1;} 1084b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1085b7c46309SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERTVALUES); 1086b7c46309SBarry Smith CHKERRQ(ierr); 1087b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1088b7c46309SBarry Smith } 1089b7c46309SBarry Smith aj = Aloc->j; 1090b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] -= a->cstart - 1;} 1091b7c46309SBarry Smith 1092b7c46309SBarry Smith /* copy over the B part */ 1093b7c46309SBarry Smith Aloc = (Mat_AIJ*) a->B->data; 1094b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1095b7c46309SBarry Smith row = a->rstart; 1096b7c46309SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 1097b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {cols[i] = a->garray[aj[i]-1];} 1098b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1099b7c46309SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERTVALUES); 1100b7c46309SBarry Smith CHKERRQ(ierr); 1101b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1102b7c46309SBarry Smith } 1103b7c46309SBarry Smith PETSCFREE(ct); 1104b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1105b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1106b7c46309SBarry Smith *Bin = B; 1107b7c46309SBarry Smith return 0; 1108b7c46309SBarry Smith } 1109b7c46309SBarry Smith 1110fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1111ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *); 1112d6dfbf8fSBarry Smith 11138a729477SBarry Smith /* -------------------------------------------------------------------*/ 11142ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 111539e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 111644a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 111744a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1118299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1119299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1120299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 112144a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1122b7c46309SBarry Smith MatTranspose_MPIAIJ, 1123a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1124855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1125ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 11261eb62cbbSBarry Smith 0, 1127299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1128299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1129299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1130d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1131299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1132ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 11338a729477SBarry Smith 11348a729477SBarry Smith /*@ 1135ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1136ff756334SLois Curfman McInnes (the default parallel PETSc format). 11378a729477SBarry Smith 11388a729477SBarry Smith Input Parameters: 11391eb62cbbSBarry Smith . comm - MPI communicator 11407d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 11417d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 11427d3e4905SLois Curfman McInnes if N is given) 11437d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 11447d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 11457d3e4905SLois Curfman McInnes if n is given) 1146ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1147ff756334SLois Curfman McInnes (same for all local rows) 1148ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1149ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1150ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1151ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1152ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1153ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1154ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 11558a729477SBarry Smith 1156ff756334SLois Curfman McInnes Output Parameter: 11578a729477SBarry Smith . newmat - the matrix 11588a729477SBarry Smith 1159ff756334SLois Curfman McInnes Notes: 1160ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1161ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 1162ff756334SLois Curfman McInnes storage. That is, the stored row and column indices begin at 1163ab693e5aSLois Curfman McInnes one, not zero. See the users manual for further details. 1164ff756334SLois Curfman McInnes 1165ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1166ff756334SLois Curfman McInnes (possibly both). 1167ff756334SLois Curfman McInnes 1168e0245417SLois Curfman McInnes Storage Information: 1169e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1170e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1171e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1172e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1173e0245417SLois Curfman McInnes 1174e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1175e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1176e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1177e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1178e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1179ff756334SLois Curfman McInnes 1180dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1181ff756334SLois Curfman McInnes 1182dbd7a890SLois Curfman McInnes .seealso: MatCreate(), MatCreateSequentialAIJ(), MatSetValues() 11838a729477SBarry Smith @*/ 11841eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 11851eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 11868a729477SBarry Smith { 11878a729477SBarry Smith Mat mat; 118844a69424SLois Curfman McInnes Mat_MPIAIJ *aij; 11896abc6512SBarry Smith int ierr, i,sum[2],work[2]; 11908a729477SBarry Smith *newmat = 0; 119144a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1192a5a9c739SBarry Smith PLogObjectCreate(mat); 119378b31e54SBarry Smith mat->data = (void *) (aij = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(aij); 11948a729477SBarry Smith mat->ops = &MatOps; 119544a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 119644a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 11978a729477SBarry Smith mat->factor = 0; 1198d6dfbf8fSBarry Smith 119907a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 12001eb62cbbSBarry Smith MPI_Comm_rank(comm,&aij->mytid); 12011eb62cbbSBarry Smith MPI_Comm_size(comm,&aij->numtids); 12021eb62cbbSBarry Smith 1203dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 12041eb62cbbSBarry Smith work[0] = m; work[1] = n; 1205d6dfbf8fSBarry Smith MPI_Allreduce((void *) work,(void *) sum,2,MPI_INT,MPI_SUM,comm ); 1206dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1207dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 12081eb62cbbSBarry Smith } 1209dbd7a890SLois Curfman McInnes if (m == PETSC_DECIDE) 1210dbd7a890SLois Curfman McInnes {m = M/aij->numtids + ((M % aij->numtids) > aij->mytid);} 1211dbd7a890SLois Curfman McInnes if (n == PETSC_DECIDE) 1212dbd7a890SLois Curfman McInnes {n = N/aij->numtids + ((N % aij->numtids) > aij->mytid);} 12138a729477SBarry Smith aij->m = m; 12148a729477SBarry Smith aij->n = n; 12151eb62cbbSBarry Smith aij->N = N; 12161eb62cbbSBarry Smith aij->M = M; 12171eb62cbbSBarry Smith 12181eb62cbbSBarry Smith /* build local table of row and column ownerships */ 121978b31e54SBarry Smith aij->rowners = (int *) PETSCMALLOC(2*(aij->numtids+2)*sizeof(int)); 122078b31e54SBarry Smith CHKPTRQ(aij->rowners); 1221464493b3SBarry Smith PLogObjectMemory(mat,2*(aij->numtids+2)*sizeof(int)+sizeof(struct _Mat)+ 1222464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 12231eb62cbbSBarry Smith aij->cowners = aij->rowners + aij->numtids + 1; 12241eb62cbbSBarry Smith MPI_Allgather(&m,1,MPI_INT,aij->rowners+1,1,MPI_INT,comm); 12251eb62cbbSBarry Smith aij->rowners[0] = 0; 12261eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 12271eb62cbbSBarry Smith aij->rowners[i] += aij->rowners[i-1]; 12288a729477SBarry Smith } 12291eb62cbbSBarry Smith aij->rstart = aij->rowners[aij->mytid]; 12301eb62cbbSBarry Smith aij->rend = aij->rowners[aij->mytid+1]; 12311eb62cbbSBarry Smith MPI_Allgather(&n,1,MPI_INT,aij->cowners+1,1,MPI_INT,comm); 12321eb62cbbSBarry Smith aij->cowners[0] = 0; 12331eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 12341eb62cbbSBarry Smith aij->cowners[i] += aij->cowners[i-1]; 12358a729477SBarry Smith } 12361eb62cbbSBarry Smith aij->cstart = aij->cowners[aij->mytid]; 12371eb62cbbSBarry Smith aij->cend = aij->cowners[aij->mytid+1]; 12388a729477SBarry Smith 12398a729477SBarry Smith 12406b5873e3SBarry Smith ierr = MatCreateSequentialAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&aij->A); 124178b31e54SBarry Smith CHKERRQ(ierr); 1242a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 12436b5873e3SBarry Smith ierr = MatCreateSequentialAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&aij->B); 124478b31e54SBarry Smith CHKERRQ(ierr); 1245a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 12468a729477SBarry Smith 12471eb62cbbSBarry Smith /* build cache for off array entries formed */ 124878b31e54SBarry Smith ierr = StashBuild_Private(&aij->stash); CHKERRQ(ierr); 12499e25ed09SBarry Smith aij->colmap = 0; 12509e25ed09SBarry Smith aij->garray = 0; 12518a729477SBarry Smith 12521eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 12531eb62cbbSBarry Smith aij->lvec = 0; 12541eb62cbbSBarry Smith aij->Mvctx = 0; 1255d6dfbf8fSBarry Smith aij->assembled = 0; 12568a729477SBarry Smith 1257d6dfbf8fSBarry Smith *newmat = mat; 1258d6dfbf8fSBarry Smith return 0; 1259d6dfbf8fSBarry Smith } 1260c74985f6SBarry Smith 1261ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat) 1262d6dfbf8fSBarry Smith { 1263d6dfbf8fSBarry Smith Mat mat; 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij,*oldmat = (Mat_MPIAIJ *) matin->data; 12652ee70a88SLois Curfman McInnes int ierr, len; 1266d6dfbf8fSBarry Smith *newmat = 0; 1267d6dfbf8fSBarry Smith 1268bbb6d6a8SBarry Smith if (!oldmat->assembled) 1269bbb6d6a8SBarry Smith SETERRQ(1,"MatCopyPrivate_MPIAIJ:Cannot copy unassembled matrix"); 127044a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1271a5a9c739SBarry Smith PLogObjectCreate(mat); 127278b31e54SBarry Smith mat->data = (void *) (aij = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(aij); 1273d6dfbf8fSBarry Smith mat->ops = &MatOps; 127444a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 127544a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1276d6dfbf8fSBarry Smith mat->factor = matin->factor; 1277d6dfbf8fSBarry Smith 1278d6dfbf8fSBarry Smith aij->m = oldmat->m; 1279d6dfbf8fSBarry Smith aij->n = oldmat->n; 1280d6dfbf8fSBarry Smith aij->M = oldmat->M; 1281d6dfbf8fSBarry Smith aij->N = oldmat->N; 1282d6dfbf8fSBarry Smith 1283d6dfbf8fSBarry Smith aij->assembled = 1; 1284d6dfbf8fSBarry Smith aij->rstart = oldmat->rstart; 1285d6dfbf8fSBarry Smith aij->rend = oldmat->rend; 1286d6dfbf8fSBarry Smith aij->cstart = oldmat->cstart; 1287d6dfbf8fSBarry Smith aij->cend = oldmat->cend; 1288d6dfbf8fSBarry Smith aij->numtids = oldmat->numtids; 1289d6dfbf8fSBarry Smith aij->mytid = oldmat->mytid; 129007a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 1291d6dfbf8fSBarry Smith 129278b31e54SBarry Smith aij->rowners = (int *) PETSCMALLOC( (aij->numtids+1)*sizeof(int) ); 129378b31e54SBarry Smith CHKPTRQ(aij->rowners); 1294464493b3SBarry Smith PLogObjectMemory(mat,(aij->numtids+1)*sizeof(int)+sizeof(struct _Mat)+ 1295464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 129678b31e54SBarry Smith PETSCMEMCPY(aij->rowners,oldmat->rowners,(aij->numtids+1)*sizeof(int)); 129778b31e54SBarry Smith ierr = StashInitialize_Private(&aij->stash); CHKERRQ(ierr); 12982ee70a88SLois Curfman McInnes if (oldmat->colmap) { 129978b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC( (aij->N)*sizeof(int) ); 130078b31e54SBarry Smith CHKPTRQ(aij->colmap); 1301464493b3SBarry Smith PLogObjectMemory(mat,(aij->N)*sizeof(int)); 130278b31e54SBarry Smith PETSCMEMCPY(aij->colmap,oldmat->colmap,(aij->N)*sizeof(int)); 13032ee70a88SLois Curfman McInnes } else aij->colmap = 0; 13042ee70a88SLois Curfman McInnes if (oldmat->garray && (len = ((Mat_AIJ *) (oldmat->B->data))->n)) { 130578b31e54SBarry Smith aij->garray = (int *) PETSCMALLOC(len*sizeof(int) ); CHKPTRQ(aij->garray); 1306464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 130778b31e54SBarry Smith PETSCMEMCPY(aij->garray,oldmat->garray,len*sizeof(int)); 13082ee70a88SLois Curfman McInnes } else aij->garray = 0; 1309d6dfbf8fSBarry Smith 131078b31e54SBarry Smith ierr = VecDuplicate(oldmat->lvec,&aij->lvec); CHKERRQ(ierr); 1311a5a9c739SBarry Smith PLogObjectParent(mat,aij->lvec); 131278b31e54SBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&aij->Mvctx); CHKERRQ(ierr); 1313a5a9c739SBarry Smith PLogObjectParent(mat,aij->Mvctx); 131478b31e54SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&aij->A); CHKERRQ(ierr); 1315a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 131678b31e54SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&aij->B); CHKERRQ(ierr); 1317a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 13188a729477SBarry Smith *newmat = mat; 13198a729477SBarry Smith return 0; 13208a729477SBarry Smith } 1321