1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708*888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28086cff0a6bSPierre Jolivet NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28764cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287742ce410bSJunchao Zhang NULL, 287842ce410bSJunchao Zhang NULL, 2879fe1fc275SAlexander /*155*/ NULL, 2880fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 288136ce4990SBarry Smith 2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2883d71ae5a4SJacob Faibussowitsch { 28842e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28852e8a6d31SBarry Smith 28862e8a6d31SBarry Smith PetscFunctionBegin; 28879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28889566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28902e8a6d31SBarry Smith } 28912e8a6d31SBarry Smith 2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2893d71ae5a4SJacob Faibussowitsch { 28942e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28952e8a6d31SBarry Smith 28962e8a6d31SBarry Smith PetscFunctionBegin; 28979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28989566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29002e8a6d31SBarry Smith } 29018a729477SBarry Smith 2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2903d71ae5a4SJacob Faibussowitsch { 2904ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29055d2a9ed1SStefano Zampini PetscMPIInt size; 2906a23d5eceSKris Buschelman 2907a23d5eceSKris Buschelman PetscFunctionBegin; 2908ad79cf63SBarry Smith if (B->hash_active) { 2909aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2910ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2911ad79cf63SBarry Smith } 29129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2914899cda47SBarry Smith 2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2916eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2917cb7b82ddSBarry Smith #else 29189566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2919cb7b82ddSBarry Smith #endif 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2923cb7b82ddSBarry Smith 29249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2925c508b908SBarry Smith 2926c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2932c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2933cb7b82ddSBarry Smith 2934c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2935ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29369566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29399566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2940c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2941899cda47SBarry Smith 29429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2944526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2945cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294615001458SStefano Zampini B->assembled = PETSC_FALSE; 29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2948a23d5eceSKris Buschelman } 2949a23d5eceSKris Buschelman 2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2951d71ae5a4SJacob Faibussowitsch { 2952ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2953846b4da1SFande Kong 2954846b4da1SFande Kong PetscFunctionBegin; 2955846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29569566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2958eb14dd14SAlex Lindsay if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 2959eb14dd14SAlex Lindsay else { 2960846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2961eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2962846b4da1SFande Kong #else 29639566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2964846b4da1SFande Kong #endif 29659566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 2967eb14dd14SAlex Lindsay } 29689566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2969846b4da1SFande Kong 29709566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29719566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2972846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2973846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2974846b4da1SFande Kong B->assembled = PETSC_FALSE; 29753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2976846b4da1SFande Kong } 2977846b4da1SFande Kong 2978d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2979d71ae5a4SJacob Faibussowitsch { 2980d6dfbf8fSBarry Smith Mat mat; 2981416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2982d6dfbf8fSBarry Smith 29833a40ed3dSBarry Smith PetscFunctionBegin; 2984f4259b30SLisandro Dalcin *newmat = NULL; 29859566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29879566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29889566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2989273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2990e1b6402fSHong Zhang 2991d5f3da31SBarry Smith mat->factortype = matin->factortype; 2992501880eeSStefano Zampini mat->assembled = matin->assembled; 2993e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2994d6dfbf8fSBarry Smith 299517699dbbSLois Curfman McInnes a->size = oldmat->size; 299617699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2997e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2998e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2999501880eeSStefano Zampini a->rowindices = NULL; 3000501880eeSStefano Zampini a->rowvalues = NULL; 3001bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 3002d6dfbf8fSBarry Smith 30039566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 30049566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3005420957c1SBarry Smith if (matin->hash_active) { 3006420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3007420957c1SBarry Smith } else { 3008420957c1SBarry Smith mat->preallocated = matin->preallocated; 30092ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3010aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3011eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3012b1fc9764SSatish Balay #else 30139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3015b1fc9764SSatish Balay #endif 3016501880eeSStefano Zampini } else a->colmap = NULL; 30173f41c07dSBarry Smith if (oldmat->garray) { 3018b1d57f15SBarry Smith PetscInt len; 3019d0f46423SBarry Smith len = oldmat->B->cmap->n; 30209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30219566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3022501880eeSStefano Zampini } else a->garray = NULL; 3023d6dfbf8fSBarry Smith 30240de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30250de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30260de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3027aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3028cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3029cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3030cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3031cff58d65SJunchao Zhang } 30329566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30339566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3034420957c1SBarry Smith } 30359566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30368a729477SBarry Smith *newmat = mat; 30373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30388a729477SBarry Smith } 3039416022c9SBarry Smith 3040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3041d71ae5a4SJacob Faibussowitsch { 304252f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 304352f91c60SVaclav Hapla 304452f91c60SVaclav Hapla PetscFunctionBegin; 304552f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 304652f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3047c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30489566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 305152f91c60SVaclav Hapla if (isbinary) { 30529566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 305352f91c60SVaclav Hapla } else if (ishdf5) { 305452f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30559566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 305652f91c60SVaclav Hapla #else 305752f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 305852f91c60SVaclav Hapla #endif 305952f91c60SVaclav Hapla } else { 306098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 306152f91c60SVaclav Hapla } 30623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306352f91c60SVaclav Hapla } 306452f91c60SVaclav Hapla 3065d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3066d71ae5a4SJacob Faibussowitsch { 30673ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30683ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30693ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30708fb81238SShri Abhyankar 30718fb81238SShri Abhyankar PetscFunctionBegin; 30729566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30738fb81238SShri Abhyankar 30743ea6fe3dSLisandro Dalcin /* read in matrix header */ 30759566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 307608401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30779371c9d4SSatish Balay M = header[1]; 30789371c9d4SSatish Balay N = header[2]; 30799371c9d4SSatish Balay nz = header[3]; 308008401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 308108401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 308208401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 308308ea439dSMark F. Adams 30843ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30859566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30863ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30873ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30883ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30918fb81238SShri Abhyankar 30923ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30939566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3094aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30958fb81238SShri Abhyankar 30963ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 31009371c9d4SSatish Balay rowidxs[0] = 0; 31019371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 31021690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3103462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 310408401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 310538b83642SBarry Smith } 310638b83642SBarry Smith 31073ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31113ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31139566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31149566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31168fb81238SShri Abhyankar } 31178fb81238SShri Abhyankar 31183782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3119ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3120d71ae5a4SJacob Faibussowitsch { 31214aa3045dSJed Brown IS iscol_local; 3122c5e4d11fSDmitry Karpeev PetscBool isstride; 31239725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31243782ecc7SHong Zhang 31253782ecc7SHong Zhang PetscFunctionBegin; 31263782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31283782ecc7SHong Zhang 3129c5e4d11fSDmitry Karpeev if (isstride) { 3130c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31319566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31339566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31349725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3135c5e4d11fSDmitry Karpeev } 31363782ecc7SHong Zhang 31379725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3138c5e4d11fSDmitry Karpeev if (gisstride) { 3139c5e4d11fSDmitry Karpeev PetscInt N; 31409566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31429566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31439566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3144c5e4d11fSDmitry Karpeev } else { 3145c5bfad50SMark F. Adams PetscInt cbs; 31469566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31479566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31489566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3149b79d0421SJed Brown } 31503782ecc7SHong Zhang 31513782ecc7SHong Zhang *isseq = iscol_local; 31523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3153c5e4d11fSDmitry Karpeev } 31548d2139bdSHong Zhang 3155ddfdf956SHong Zhang /* 31569c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31579c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3158ddfdf956SHong Zhang 3159ddfdf956SHong Zhang Input Parameters: 316027430b45SBarry Smith + mat - matrix 316127430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31629c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 316327430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3164ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 316527430b45SBarry Smith 316627430b45SBarry Smith Output Parameters: 316727430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 316827430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 316927430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 317027430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3171ddfdf956SHong Zhang */ 3172835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3173d71ae5a4SJacob Faibussowitsch { 3174040216a4SHong Zhang Vec x, cmap; 3175040216a4SHong Zhang const PetscInt *is_idx; 3176040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31779c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3178040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3179040216a4SHong Zhang Mat B = a->B; 3180040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3181a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31828b3fa1f7SHong Zhang MPI_Comm comm; 31833a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31843782ecc7SHong Zhang 31853782ecc7SHong Zhang PetscFunctionBegin; 31869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31888b3fa1f7SHong Zhang 3189ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31909566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31919566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31929566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31939566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31940a351717SHong Zhang 31959c988bcaSHong Zhang /* Get start indices */ 31969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3197ddfdf956SHong Zhang isstart -= ncols; 31989566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3199040216a4SHong Zhang 32009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 32019566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 32029566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 32039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3204ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32058b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3206ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32079c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32088b3fa1f7SHong Zhang } 32099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32128b3fa1f7SHong Zhang 32139c988bcaSHong Zhang /* Get iscol_d */ 32149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32159566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32169566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3217feb78a15SHong Zhang 32189c988bcaSHong Zhang /* Get isrow_d */ 32199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3220feb78a15SHong Zhang rstart = mat->rmap->rstart; 32219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32239c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3225feb78a15SHong Zhang 32269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32279566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32289566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3229feb78a15SHong Zhang 32309c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3233ddfdf956SHong Zhang 32349566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 323507250d77SHong Zhang 32369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 323864efcef9SHong Zhang 32399c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3240ddfdf956SHong Zhang /* off-process column indices */ 32419c988bcaSHong Zhang count = 0; 32429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3244feb78a15SHong Zhang 32459566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32469566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32478b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3248f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32499c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32501c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32511c645242SHong Zhang count++; 32528b3fa1f7SHong Zhang } 32538b3fa1f7SHong Zhang } 32549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 325607250d77SHong Zhang 32579566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3258b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3259b6d9b4e0SHong Zhang 32609566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32619c988bcaSHong Zhang *garray = cmap1; 32629c988bcaSHong Zhang 32639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3267040216a4SHong Zhang } 3268040216a4SHong Zhang 3269b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3270d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3271d71ae5a4SJacob Faibussowitsch { 3272b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32731fd43edeSHong Zhang Mat M = NULL; 32743b00a383SHong Zhang MPI_Comm comm; 3275b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32763b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3277b20e2604SHong Zhang PetscInt n; 32783b00a383SHong Zhang 32793b00a383SHong Zhang PetscFunctionBegin; 32809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32813b00a383SHong Zhang 32823b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3283b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32849566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 328528b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32863b00a383SHong Zhang 32879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 328828b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32893b00a383SHong Zhang 32909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 329128b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32923b00a383SHong Zhang 3293b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3294b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32959566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32969566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 329748a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 33003b00a383SHong Zhang 33013b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3302835f2295SStefano Zampini PetscInt *garray; 3303b20e2604SHong Zhang PetscInt BsubN; 33043b00a383SHong Zhang 3305b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33069566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33073b00a383SHong Zhang 3308b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33109566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33113b00a383SHong Zhang 33129c988bcaSHong Zhang /* Create submatrix M */ 33139566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33143b00a383SHong Zhang 3315b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3316b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33177cfce09cSHong Zhang 33189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3319b20e2604SHong Zhang n = asub->B->cmap->N; 3320b20e2604SHong Zhang if (BsubN > n) { 3321c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33227cfce09cSHong Zhang const PetscInt *idx; 33239c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33249566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33257cfce09cSHong Zhang 33269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33277cfce09cSHong Zhang j = 0; 33289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3329b20e2604SHong Zhang for (i = 0; i < n; i++) { 33307cfce09cSHong Zhang if (j >= BsubN) break; 33319c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33327cfce09cSHong Zhang 33339c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33347cfce09cSHong Zhang idx_new[i] = idx[j++]; 333598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33367cfce09cSHong Zhang } 33379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33387cfce09cSHong Zhang 33399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33417cfce09cSHong Zhang 3342b20e2604SHong Zhang } else if (BsubN < n) { 334398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3344b20e2604SHong Zhang } 33457cfce09cSHong Zhang 33469566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3347b20e2604SHong Zhang *submat = M; 33483b00a383SHong Zhang 3349e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33509566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33523b00a383SHong Zhang 33539566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33553b00a383SHong Zhang 33569566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33583b00a383SHong Zhang } 33593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33603b00a383SHong Zhang } 33613b00a383SHong Zhang 3362d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3363d71ae5a4SJacob Faibussowitsch { 33641358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33653782ecc7SHong Zhang PetscInt csize; 336618e627e3SHong Zhang PetscInt n, i, j, start, end; 33674a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33683782ecc7SHong Zhang MPI_Comm comm; 33693782ecc7SHong Zhang 33703782ecc7SHong Zhang PetscFunctionBegin; 3371bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3372a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33738f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3375d5761cdaSHong Zhang if (isrow_d) { 3376d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3377d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3378d5761cdaSHong Zhang } else { 33799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3380d5761cdaSHong Zhang if (iscol_local) { 3381d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3382d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3383d5761cdaSHong Zhang } 3384d5761cdaSHong Zhang } 33858f69fa7bSHong Zhang } else { 3386e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 338718e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33889566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33893782ecc7SHong Zhang if (!n) { 339018e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33913782ecc7SHong Zhang } else { 33929566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3394ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33958f69fa7bSHong Zhang } 33963782ecc7SHong Zhang 3397e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 339818e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 340018e627e3SHong Zhang if (!n) { 340118e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 340218e627e3SHong Zhang } else { 34039566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 340518e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 340618e627e3SHong Zhang } 340718e627e3SHong Zhang 34089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3409462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 341018e627e3SHong Zhang sameRowDist = tsameDist[0]; 341118e627e3SHong Zhang } 341218e627e3SHong Zhang 341318e627e3SHong Zhang if (sameRowDist) { 3414b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34153b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3418b20e2604SHong Zhang } else { /* sameRowDist */ 34193b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34201358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34211358a193SHong Zhang PetscBool sorted; 34229566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34239566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34249566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 342508401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34261358a193SHong Zhang 34279566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34281358a193SHong Zhang if (sorted) { 34291358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34309566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34323782ecc7SHong Zhang } 34331358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 343448c0d076SHong Zhang IS iscol_sub; 34359566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 343648c0d076SHong Zhang if (iscol_sub) { 34379566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343948c0d076SHong Zhang } 34401358a193SHong Zhang } 34411358a193SHong Zhang } 34421358a193SHong Zhang } 34433782ecc7SHong Zhang 3444bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34453782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34469566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 344728b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34483782ecc7SHong Zhang } else { 344948a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34501358a193SHong Zhang } 34513782ecc7SHong Zhang 34529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34548f69fa7bSHong Zhang 3455b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34569566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3458b79d0421SJed Brown } 34593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34604aa3045dSJed Brown } 34614aa3045dSJed Brown 3462feb78a15SHong Zhang /*@C 346311a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3464feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3465feb78a15SHong Zhang 3466d083f849SBarry Smith Collective 3467feb78a15SHong Zhang 3468feb78a15SHong Zhang Input Parameters: 3469feb78a15SHong Zhang + comm - MPI communicator 3470feb78a15SHong Zhang . A - "diagonal" portion of matrix 3471b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34722ef1f0ffSBarry Smith - garray - global index of `B` columns 3473feb78a15SHong Zhang 3474feb78a15SHong Zhang Output Parameter: 34752ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 347627430b45SBarry Smith 3477feb78a15SHong Zhang Level: advanced 3478feb78a15SHong Zhang 3479feb78a15SHong Zhang Notes: 348011a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 348111a5261eSBarry Smith 34822ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3483feb78a15SHong Zhang 34841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3485feb78a15SHong Zhang @*/ 3486d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3487d71ae5a4SJacob Faibussowitsch { 3488feb78a15SHong Zhang Mat_MPIAIJ *maij; 3489e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3490a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3491ce496241SStefano Zampini const PetscScalar *oa; 3492e489de8fSHong Zhang Mat Bnew; 3493feb78a15SHong Zhang PetscInt m, n, N; 34944ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3495feb78a15SHong Zhang 3496feb78a15SHong Zhang PetscFunctionBegin; 34979566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34989566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 349908401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 350037a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3501b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 350208401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3503feb78a15SHong Zhang 3504e489de8fSHong Zhang /* Get global columns of mat */ 3505462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3506feb78a15SHong Zhang 35079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 35084ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35094ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35104ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35114ab4d6f4SRichard Tran Mills 351237a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3513feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3514feb78a15SHong Zhang 3515feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3516feb78a15SHong Zhang 35179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3519feb78a15SHong Zhang 3520e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3521feb78a15SHong Zhang maij->A = A; 3522feb78a15SHong Zhang 3523a5348796SHong Zhang nz = oi[m]; 3524a5348796SHong Zhang for (i = 0; i < nz; i++) { 3525a5348796SHong Zhang col = oj[i]; 3526a5348796SHong Zhang oj[i] = garray[col]; 3527feb78a15SHong Zhang } 3528feb78a15SHong Zhang 3529e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35319566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3533e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3534e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3535e489de8fSHong Zhang maij->B = Bnew; 3536d5761cdaSHong Zhang 353708401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3538d5761cdaSHong Zhang 3539d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3540d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3542d5761cdaSHong Zhang 3543e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3544e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3545feb78a15SHong Zhang 3546a5348796SHong Zhang /* condense columns of maij->B */ 35479566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35509566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35519566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3553feb78a15SHong Zhang } 3554feb78a15SHong Zhang 3555ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35564aa3045dSJed Brown 3557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3558d71ae5a4SJacob Faibussowitsch { 355998b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 356085f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 356198b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35621fd43edeSHong Zhang Mat M, Msub, B = a->B; 356398b658c4SHong Zhang MatScalar *aa; 356400e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3565a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 356698b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 356798b658c4SHong Zhang IS iscol_sub, iscmap; 356898b658c4SHong Zhang const PetscInt *is_idx, *cmap; 356918e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3570a31a438cSHong Zhang MPI_Comm comm; 35717e2c5f70SBarry Smith 3572a0ff6018SBarry Smith PetscFunctionBegin; 35739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3574d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 357628b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3578d5761cdaSHong Zhang 35799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 358028b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3581d5761cdaSHong Zhang 35829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 358328b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3584d5761cdaSHong Zhang 35859566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3586d5761cdaSHong Zhang 3587d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35883b00a383SHong Zhang PetscBool flg; 35893b00a383SHong Zhang 35909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35919566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3592bcae8d28SHong Zhang 35933b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3594366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35959566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3596366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3597462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3598366a327dSHong Zhang if (allcolumns) { 3599366a327dSHong Zhang iscol_sub = iscol_local; 36009566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 36019566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3602366a327dSHong Zhang 36033b00a383SHong Zhang } else { 36041358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3605244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 36069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36098d2139bdSHong Zhang count = 0; 3610a31a438cSHong Zhang k = 0; 3611a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3612a31a438cSHong Zhang j = is_idx[i]; 3613a31a438cSHong Zhang if (j >= cstart && j < cend) { 3614a31a438cSHong Zhang /* diagonal part of mat */ 36158d2139bdSHong Zhang idx[count] = j; 3616366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36174a3daf6eSHong Zhang } else if (Bn) { 3618a31a438cSHong Zhang /* off-diagonal part of mat */ 3619a31a438cSHong Zhang if (j == garray[k]) { 36208d2139bdSHong Zhang idx[count] = j; 3621a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3622a31a438cSHong Zhang } else if (j > garray[k]) { 3623a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3624a31a438cSHong Zhang if (j == garray[k]) { 3625a31a438cSHong Zhang idx[count] = j; 3626a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36278d2139bdSHong Zhang } 36288d2139bdSHong Zhang } 36298d2139bdSHong Zhang } 36308d2139bdSHong Zhang } 36319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36328d2139bdSHong Zhang 36339566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36349566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36359566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3636b6d9b4e0SHong Zhang 36379566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3638a31a438cSHong Zhang } 36398b3fa1f7SHong Zhang 36403b00a383SHong Zhang /* (3) Create sequential Msub */ 36419566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3642d5761cdaSHong Zhang } 36438d2139bdSHong Zhang 36449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 364557508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 364698b658c4SHong Zhang ii = aij->i; 36479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3648a0ff6018SBarry Smith 3649a0ff6018SBarry Smith /* 3650a0ff6018SBarry Smith m - number of local rows 3651a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3652a0ff6018SBarry Smith rstart - first row in new global matrix generated 3653a0ff6018SBarry Smith */ 36549566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 365598b658c4SHong Zhang 36563b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36573b00a383SHong Zhang /* (4) Create parallel newmat */ 365898b658c4SHong Zhang PetscMPIInt rank, size; 3659bcae8d28SHong Zhang PetscInt csize; 366098b658c4SHong Zhang 36619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 366300e6dbe6SBarry Smith 3664a0ff6018SBarry Smith /* 366500e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 366600e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3667a0ff6018SBarry Smith */ 366800e6dbe6SBarry Smith 366900e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36716a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36729566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3673a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3674e2c4fddaSBarry Smith nlocal = m; 36756a6a5d1dSBarry Smith } else { 3676a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3677ab50ec6bSBarry Smith } 3678ab50ec6bSBarry Smith } else { 36796a6a5d1dSBarry Smith nlocal = csize; 36806a6a5d1dSBarry Smith } 36819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 368200e6dbe6SBarry Smith rstart = rend - nlocal; 3683aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 368400e6dbe6SBarry Smith 368500e6dbe6SBarry Smith /* next, compute all the lengths */ 368698b658c4SHong Zhang jj = aij->j; 36879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 368800e6dbe6SBarry Smith olens = dlens + m; 368900e6dbe6SBarry Smith for (i = 0; i < m; i++) { 369000e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 369100e6dbe6SBarry Smith olen = 0; 369200e6dbe6SBarry Smith dlen = 0; 369300e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 369415b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 369500e6dbe6SBarry Smith else dlen++; 369600e6dbe6SBarry Smith jj++; 369700e6dbe6SBarry Smith } 369800e6dbe6SBarry Smith olens[i] = olen; 369900e6dbe6SBarry Smith dlens[i] = dlen; 370000e6dbe6SBarry Smith } 3701b6d9b4e0SHong Zhang 37029566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 37039566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 370498b658c4SHong Zhang 37059566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 37069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37079566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37089566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37109566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3711d5761cdaSHong Zhang 3712d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3713a0ff6018SBarry Smith M = *newmat; 37149566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 371508401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37169566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3717c48de900SBarry Smith /* 3718c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3719c48de900SBarry Smith rather than the slower MatSetValues(). 3720c48de900SBarry Smith */ 3721c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3722c48de900SBarry Smith M->assembled = PETSC_FALSE; 3723a0ff6018SBarry Smith } 3724548ecf4dSHong Zhang 37253b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37279566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 372898b658c4SHong Zhang 372998b658c4SHong Zhang jj = aij->j; 37309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3731a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3732a0ff6018SBarry Smith row = rstart + i; 373300e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 373415b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37359566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37369371c9d4SSatish Balay jj += nz; 37379371c9d4SSatish Balay aa += nz; 3738a0ff6018SBarry Smith } 37399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3741a0ff6018SBarry Smith 37429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3744fee21e36SBarry Smith 37459566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 374698b658c4SHong Zhang 374798b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3748fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37493b00a383SHong Zhang *newmat = M; 3750f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 375298b658c4SHong Zhang 3753f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 375598b658c4SHong Zhang 3756f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3758bcae8d28SHong Zhang 3759bcae8d28SHong Zhang if (iscol_local) { 3760f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3762bcae8d28SHong Zhang } 376398b658c4SHong Zhang } 37643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3765a0ff6018SBarry Smith } 3766273d9f13SBarry Smith 3767df40acb1SHong Zhang /* 3768df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3769df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3770df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3771df40acb1SHong Zhang 377211a5261eSBarry Smith This requires a sequential iscol with all indices. 3773df40acb1SHong Zhang */ 3774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3775d71ae5a4SJacob Faibussowitsch { 3776df40acb1SHong Zhang PetscMPIInt rank, size; 3777df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3778df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3779df40acb1SHong Zhang Mat M, Mreuse; 378098b658c4SHong Zhang MatScalar *aa, *vwork; 3781df40acb1SHong Zhang MPI_Comm comm; 3782df40acb1SHong Zhang Mat_SeqAIJ *aij; 37830b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3784df40acb1SHong Zhang 3785df40acb1SHong Zhang PetscFunctionBegin; 37869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3789df40acb1SHong Zhang 37900b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37919566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37930b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3794462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37950b27a90eSHong Zhang 3796df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37979566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 379828b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37999566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3800df40acb1SHong Zhang } else { 38019566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3802df40acb1SHong Zhang } 3803df40acb1SHong Zhang 3804df40acb1SHong Zhang /* 3805df40acb1SHong Zhang m - number of local rows 3806df40acb1SHong Zhang n - number of columns (same on all processors) 3807df40acb1SHong Zhang rstart - first row in new global matrix generated 3808df40acb1SHong Zhang */ 38099566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38109566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3811df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 381257508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3813df40acb1SHong Zhang ii = aij->i; 3814df40acb1SHong Zhang jj = aij->j; 3815df40acb1SHong Zhang 3816df40acb1SHong Zhang /* 3817df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3818df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3819df40acb1SHong Zhang */ 3820df40acb1SHong Zhang 3821df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3822df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38239566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3824df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3825df40acb1SHong Zhang nlocal = m; 3826df40acb1SHong Zhang } else { 3827df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3828df40acb1SHong Zhang } 3829df40acb1SHong Zhang } else { 3830df40acb1SHong Zhang nlocal = csize; 3831df40acb1SHong Zhang } 38329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3833df40acb1SHong Zhang rstart = rend - nlocal; 3834aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3835df40acb1SHong Zhang 3836df40acb1SHong Zhang /* next, compute all the lengths */ 38379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3838df40acb1SHong Zhang olens = dlens + m; 3839df40acb1SHong Zhang for (i = 0; i < m; i++) { 3840df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3841df40acb1SHong Zhang olen = 0; 3842df40acb1SHong Zhang dlen = 0; 3843df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3844df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3845df40acb1SHong Zhang else dlen++; 3846df40acb1SHong Zhang jj++; 3847df40acb1SHong Zhang } 3848df40acb1SHong Zhang olens[i] = olen; 3849df40acb1SHong Zhang dlens[i] = dlen; 3850df40acb1SHong Zhang } 38519566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38539566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38549566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38559566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38569566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3857df40acb1SHong Zhang } else { 3858df40acb1SHong Zhang PetscInt ml, nl; 3859df40acb1SHong Zhang 3860df40acb1SHong Zhang M = *newmat; 38619566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 386208401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38639566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3864df40acb1SHong Zhang /* 3865df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3866df40acb1SHong Zhang rather than the slower MatSetValues(). 3867df40acb1SHong Zhang */ 3868df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3869df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3870df40acb1SHong Zhang } 38719566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 387257508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3873df40acb1SHong Zhang ii = aij->i; 3874df40acb1SHong Zhang jj = aij->j; 38752e5835c6SStefano Zampini 38762e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3878df40acb1SHong Zhang for (i = 0; i < m; i++) { 3879df40acb1SHong Zhang row = rstart + i; 3880df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38819371c9d4SSatish Balay cwork = jj; 38828e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38839371c9d4SSatish Balay vwork = aa; 38848e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38859566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3886df40acb1SHong Zhang } 38879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3888df40acb1SHong Zhang 38899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3891df40acb1SHong Zhang *newmat = M; 3892df40acb1SHong Zhang 3893df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3894df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38959566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38969566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3897df40acb1SHong Zhang } 38983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3899df40acb1SHong Zhang } 3900df40acb1SHong Zhang 3901ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3902d71ae5a4SJacob Faibussowitsch { 39036a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 39049f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3905ccd8e176SBarry Smith const PetscInt *JJ; 3906eeb24464SBarry Smith PetscBool nooffprocentries; 39076a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3908ccd8e176SBarry Smith 3909ccd8e176SBarry Smith PetscFunctionBegin; 39109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3912d0f46423SBarry Smith m = B->rmap->n; 3913d0f46423SBarry Smith cstart = B->cmap->rstart; 3914d0f46423SBarry Smith cend = B->cmap->rend; 3915d0f46423SBarry Smith rstart = B->rmap->rstart; 39169f0612e4SBarry Smith irstart = Ii[0]; 3917899cda47SBarry Smith 39189566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3919ccd8e176SBarry Smith 392076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39218f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3922ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39239f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 392408401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 392508401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 392608401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3927ecc77c7aSBarry Smith } 392876bd3646SJed Brown } 3929ecc77c7aSBarry Smith 39308f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3931b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39329f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3933ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3934ccd8e176SBarry Smith d = 0; 39350daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39360daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3937ccd8e176SBarry Smith } 3938ccd8e176SBarry Smith d_nnz[i] = d; 3939ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3940ccd8e176SBarry Smith } 39419566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39429566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3943ccd8e176SBarry Smith 39448f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3945ccd8e176SBarry Smith ii = i + rstart; 39469f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3947ccd8e176SBarry Smith } 3948eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3949eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3952eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3953ccd8e176SBarry Smith 39546a3d2595SBarry Smith /* count number of entries below block diagonal */ 39556a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39566a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39576a3d2595SBarry Smith Aij->ld = ld; 39586a3d2595SBarry Smith for (i = 0; i < m; i++) { 39596a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39606a3d2595SBarry Smith j = 0; 3961ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39626a3d2595SBarry Smith ld[i] = j; 3963720a2405SPierre Jolivet if (J) J += nnz; 39646a3d2595SBarry Smith } 39656a3d2595SBarry Smith 39669566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3968ccd8e176SBarry Smith } 3969ccd8e176SBarry Smith 39701eea217eSSatish Balay /*@ 397111a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3972ccd8e176SBarry Smith (the default parallel PETSc format). 3973ccd8e176SBarry Smith 3974d083f849SBarry Smith Collective 3975ccd8e176SBarry Smith 3976ccd8e176SBarry Smith Input Parameters: 3977a1661176SMatthew Knepley + B - the matrix 3978d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3979d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3980ccd8e176SBarry Smith - v - optional values in the matrix 3981ccd8e176SBarry Smith 3982ccd8e176SBarry Smith Level: developer 3983ccd8e176SBarry Smith 398412251496SSatish Balay Notes: 39852ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39862ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 398711a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 398812251496SSatish Balay 39892ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 399012251496SSatish Balay 3991a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3992a4bd8bc0SBarry Smith 3993a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3994a4bd8bc0SBarry Smith 3995a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3996a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3997a4bd8bc0SBarry Smith 399812251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 399912251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4000c5e4d11fSDmitry Karpeev as shown 400127430b45SBarry Smith .vb 400227430b45SBarry Smith 1 0 0 400327430b45SBarry Smith 2 0 3 P0 400427430b45SBarry Smith ------- 400527430b45SBarry Smith 4 5 6 P1 400627430b45SBarry Smith 400727430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 400827430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 400927430b45SBarry Smith j = {0,0,2} [size = 3] 401027430b45SBarry Smith v = {1,2,3} [size = 3] 401127430b45SBarry Smith 401227430b45SBarry Smith Process1 [P1] rows_owned=[2] 401327430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 401427430b45SBarry Smith j = {0,1,2} [size = 3] 401527430b45SBarry Smith v = {4,5,6} [size = 3] 401627430b45SBarry Smith .ve 401712251496SSatish Balay 4018fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4019a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4020ccd8e176SBarry Smith @*/ 4021d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4022d71ae5a4SJacob Faibussowitsch { 4023ccd8e176SBarry Smith PetscFunctionBegin; 4024cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4026ccd8e176SBarry Smith } 4027ccd8e176SBarry Smith 40285d83a8b1SBarry Smith /*@ 402911a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4030273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4031273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 403220f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4033273d9f13SBarry Smith 4034d083f849SBarry Smith Collective 4035273d9f13SBarry Smith 4036273d9f13SBarry Smith Input Parameters: 40371c4f3114SJed Brown + B - the matrix 4038273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4039273d9f13SBarry Smith (same value is used for all local rows) 4040273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4041273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40422ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4043273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40443287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40453287b5eaSJed Brown the diagonal entry even if it is zero. 4046273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4047273d9f13SBarry Smith submatrix (same value is used for all local rows). 4048273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4049273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40502ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4051273d9f13SBarry Smith structure. The size of this array is equal to the number 4052273d9f13SBarry Smith of local rows, i.e 'm'. 4053273d9f13SBarry Smith 40542920cce0SJacob Faibussowitsch Example Usage: 405527430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 405627430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 405727430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 405827430b45SBarry Smith as follows 405927430b45SBarry Smith 406027430b45SBarry Smith .vb 406127430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 406227430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 406327430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 406427430b45SBarry Smith ------------------------------------- 406527430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 406627430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 406727430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 406827430b45SBarry Smith ------------------------------------- 406927430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 407027430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 407127430b45SBarry Smith .ve 407227430b45SBarry Smith 407327430b45SBarry Smith This can be represented as a collection of submatrices as 407427430b45SBarry Smith .vb 407527430b45SBarry Smith A B C 407627430b45SBarry Smith D E F 407727430b45SBarry Smith G H I 407827430b45SBarry Smith .ve 407927430b45SBarry Smith 408027430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 408127430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 408227430b45SBarry Smith 408327430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 408427430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 408527430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 408627430b45SBarry Smith 408727430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 408827430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 408927430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 409027430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 409127430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40925163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 409327430b45SBarry Smith 409420f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40955163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40965163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40975163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40985163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 409920f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 410027430b45SBarry Smith .vb 410127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 410227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 410327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 410427430b45SBarry Smith .ve 410520f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 410627430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 410727430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 410827430b45SBarry Smith 34 values. 410927430b45SBarry Smith 411020f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 411127430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 411220f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 411327430b45SBarry Smith .vb 411427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 411527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 411627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 411727430b45SBarry Smith .ve 411827430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 411927430b45SBarry Smith hence pre-allocation is perfect. 412027430b45SBarry Smith 412127430b45SBarry Smith Level: intermediate 412227430b45SBarry Smith 412327430b45SBarry Smith Notes: 412449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 412549a6f317SBarry Smith 412627430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41270598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4128651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4129273d9f13SBarry Smith 4130273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4131273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4132273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4133273d9f13SBarry Smith 4134273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4135a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4136a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4137a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4138a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4139a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4140a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4141a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4142a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4143273d9f13SBarry Smith 41442ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4145273d9f13SBarry Smith 414627430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4147aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 414827430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4149aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4150aa95bbe8SBarry Smith 41511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4152a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4153273d9f13SBarry Smith @*/ 4154d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4155d71ae5a4SJacob Faibussowitsch { 4156273d9f13SBarry Smith PetscFunctionBegin; 41576ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41586ba663aaSJed Brown PetscValidType(B, 1); 4159cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4161273d9f13SBarry Smith } 4162273d9f13SBarry Smith 416358d36128SBarry Smith /*@ 416411a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41658f8f2f0dSBarry Smith CSR format for the local rows. 41662fb0ec9aSBarry Smith 4167d083f849SBarry Smith Collective 41682fb0ec9aSBarry Smith 41692fb0ec9aSBarry Smith Input Parameters: 41702fb0ec9aSBarry Smith + comm - MPI communicator 417111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41722fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4173d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4174d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4175d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4176d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41775693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41785693b835SJunchao Zhang . j - global column indices 4179f1f2ae84SBarry Smith - a - optional matrix values 41802fb0ec9aSBarry Smith 41812fb0ec9aSBarry Smith Output Parameter: 41822fb0ec9aSBarry Smith . mat - the matrix 418303bfb495SBarry Smith 41842fb0ec9aSBarry Smith Level: intermediate 41852fb0ec9aSBarry Smith 41862fb0ec9aSBarry Smith Notes: 41872ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4188d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4189d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41902fb0ec9aSBarry Smith 41912ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 419212251496SSatish Balay 41935693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4194a4bd8bc0SBarry Smith 41955693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4196a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4197a4bd8bc0SBarry Smith 419812251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4199d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4200c5e4d11fSDmitry Karpeev as shown 42012ef1f0ffSBarry Smith .vb 42022ef1f0ffSBarry Smith 1 0 0 42032ef1f0ffSBarry Smith 2 0 3 P0 42042ef1f0ffSBarry Smith ------- 42052ef1f0ffSBarry Smith 4 5 6 P1 42068f8f2f0dSBarry Smith 42072ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42082ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42092ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42102ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42112fb0ec9aSBarry Smith 42122ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42132ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42142ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42152ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42162ef1f0ffSBarry Smith .ve 42172ef1f0ffSBarry Smith 4218d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42195693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42202fb0ec9aSBarry Smith @*/ 4221d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4222d71ae5a4SJacob Faibussowitsch { 42232fb0ec9aSBarry Smith PetscFunctionBegin; 422408401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 422508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42269566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42289566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42299566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42309566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42322fb0ec9aSBarry Smith } 42332fb0ec9aSBarry Smith 42348f8f2f0dSBarry Smith /*@ 423511a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42362ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42372ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42386a3d2595SBarry Smith 42396a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42408f8f2f0dSBarry Smith 42418f8f2f0dSBarry Smith Collective 42428f8f2f0dSBarry Smith 42438f8f2f0dSBarry Smith Input Parameters: 42448f8f2f0dSBarry Smith + mat - the matrix 424511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42468f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 424711a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42488f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 424911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 425011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42518f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42528f8f2f0dSBarry Smith . J - column indices 42538f8f2f0dSBarry Smith - v - matrix values 42548f8f2f0dSBarry Smith 42552ef1f0ffSBarry Smith Level: deprecated 42568f8f2f0dSBarry Smith 42571cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4258a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42598f8f2f0dSBarry Smith @*/ 4260d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4261d71ae5a4SJacob Faibussowitsch { 42626a3d2595SBarry Smith PetscInt nnz, i; 42638f8f2f0dSBarry Smith PetscBool nooffprocentries; 42648f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4265fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4266fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42678f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42686a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42696a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42708f8f2f0dSBarry Smith 42718f8f2f0dSBarry Smith PetscFunctionBegin; 4272aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 427308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 427408401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 427508401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42768f8f2f0dSBarry Smith 42779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42798f8f2f0dSBarry Smith 42808f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42814c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42824c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42834c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42844c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42854c17f1ccSBarry Smith } 42864c17f1ccSBarry Smith } 42878f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42888f8f2f0dSBarry Smith Iii = Ii[i]; 42898f8f2f0dSBarry Smith ldi = ld[i]; 42908f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42919566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42939566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42948f8f2f0dSBarry Smith ad += md; 42958f8f2f0dSBarry Smith ao += nnz - md; 42968f8f2f0dSBarry Smith } 42978f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42988f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43019566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43029566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43039566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43068f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43088f8f2f0dSBarry Smith } 43098f8f2f0dSBarry Smith 43106a3d2595SBarry Smith /*@ 431111a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43126a3d2595SBarry Smith 43136a3d2595SBarry Smith Collective 43146a3d2595SBarry Smith 43156a3d2595SBarry Smith Input Parameters: 43166a3d2595SBarry Smith + mat - the matrix 43176a3d2595SBarry Smith - v - matrix values, stored by row 43186a3d2595SBarry Smith 43196a3d2595SBarry Smith Level: intermediate 43206a3d2595SBarry Smith 4321a4bd8bc0SBarry Smith Notes: 43226a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43236a3d2595SBarry Smith 4324a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4325a4bd8bc0SBarry Smith 43261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4327a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43286a3d2595SBarry Smith @*/ 4329d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4330d71ae5a4SJacob Faibussowitsch { 43316a3d2595SBarry Smith PetscInt nnz, i, m; 43326a3d2595SBarry Smith PetscBool nooffprocentries; 43336a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43346a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43356a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43366a3d2595SBarry Smith PetscScalar *ad, *ao; 43376a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43386a3d2595SBarry Smith PetscInt ldi, Iii, md; 43396a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43406a3d2595SBarry Smith 43416a3d2595SBarry Smith PetscFunctionBegin; 43426a3d2595SBarry Smith m = mat->rmap->n; 43436a3d2595SBarry Smith 43446a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43456a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43466a3d2595SBarry Smith Iii = 0; 43476a3d2595SBarry Smith for (i = 0; i < m; i++) { 43486a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43496a3d2595SBarry Smith ldi = ld[i]; 43506a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43516a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43526a3d2595SBarry Smith ad += md; 4353810441c8SPierre Jolivet if (ao) { 4354810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4355810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43566a3d2595SBarry Smith ao += nnz - md; 4357810441c8SPierre Jolivet } 43586a3d2595SBarry Smith Iii += nnz; 43596a3d2595SBarry Smith } 43606a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43616a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43626a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43636a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43646a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43656a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43666a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43676a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43686a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43696a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43716a3d2595SBarry Smith } 43726a3d2595SBarry Smith 43735d83a8b1SBarry Smith /*@ 437411a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4375273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4376273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43772ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4378273d9f13SBarry Smith 4379d083f849SBarry Smith Collective 4380273d9f13SBarry Smith 4381273d9f13SBarry Smith Input Parameters: 4382273d9f13SBarry Smith + comm - MPI communicator 438311a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4384273d9f13SBarry Smith This value should be the same as the local size used in creating the 4385273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4386273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 438745f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4388273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 438911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 439011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4391273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4392273d9f13SBarry Smith (same value is used for all local rows) 4393273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4394273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43952ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4396273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4397273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4398273d9f13SBarry Smith submatrix (same value is used for all local rows). 4399273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4400273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 44012ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4402273d9f13SBarry Smith structure. The size of this array is equal to the number 4403273d9f13SBarry Smith of local rows, i.e 'm'. 4404273d9f13SBarry Smith 4405273d9f13SBarry Smith Output Parameter: 4406273d9f13SBarry Smith . A - the matrix 4407273d9f13SBarry Smith 440827430b45SBarry Smith Options Database Keys: 440927430b45SBarry Smith + -mat_no_inode - Do not use inodes 441027430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 441127430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4412727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4413727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 441427430b45SBarry Smith 44152ef1f0ffSBarry Smith Level: intermediate 44162ef1f0ffSBarry Smith 441727430b45SBarry Smith Notes: 441877433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4419f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 442011a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4421175b88e8SBarry Smith 442249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 442349a6f317SBarry Smith 44242ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44252ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4426273d9f13SBarry Smith storage requirements for this matrix. 4427273d9f13SBarry Smith 442811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4429273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4430273d9f13SBarry Smith that argument. 4431273d9f13SBarry Smith 4432727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4433727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4434727bdf9bSBarry Smith 4435273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4436273d9f13SBarry Smith (possibly both). 4437273d9f13SBarry Smith 443833a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4439727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4440727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4441727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 444233a7c187SSatish Balay values corresponding to [m x N] submatrix. 4443273d9f13SBarry Smith 444433a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 444533a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4446df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 444733a7c187SSatish Balay 444833a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 444933a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 445033a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 445133a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 445233a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 445333a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44540b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44550b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 445633a7c187SSatish Balay 445733a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 445833a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 445933a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 446033a7c187SSatish Balay local matrix (a rectangular submatrix). 4461273d9f13SBarry Smith 44622ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4463273d9f13SBarry Smith 446497d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44652ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4466da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4467da57b5cdSKarl Rupp .vb 44682ef1f0ffSBarry Smith MatCreate(..., &A); 44692ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44702ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44712ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4472da57b5cdSKarl Rupp .ve 447397d05335SKris Buschelman 4474273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4475273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4476273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4477273d9f13SBarry Smith 44782920cce0SJacob Faibussowitsch Example Usage: 4479273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4480273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4481273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4482efc377ccSKarl Rupp as follows 4483273d9f13SBarry Smith 4484273d9f13SBarry Smith .vb 4485273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4486273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4487273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4488273d9f13SBarry Smith ------------------------------------- 4489273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4490273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4491273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4492273d9f13SBarry Smith ------------------------------------- 4493273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4494273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4495273d9f13SBarry Smith .ve 4496273d9f13SBarry Smith 4497da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4498273d9f13SBarry Smith 4499273d9f13SBarry Smith .vb 4500273d9f13SBarry Smith A B C 4501273d9f13SBarry Smith D E F 4502273d9f13SBarry Smith G H I 4503273d9f13SBarry Smith .ve 4504273d9f13SBarry Smith 4505273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4506273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4507273d9f13SBarry Smith 4508273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4509273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4510273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4511273d9f13SBarry Smith 4512273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4513273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4514273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4515273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 451627430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45175163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4518273d9f13SBarry Smith 45192ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45205163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45215163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45225163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45235163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45242ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4525273d9f13SBarry Smith .vb 452627430b45SBarry Smith proc0 dnz = 2, o_nz = 2 452727430b45SBarry Smith proc1 dnz = 3, o_nz = 2 452827430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4529273d9f13SBarry Smith .ve 45302ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4531273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4532273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4533273d9f13SBarry Smith 34 values. 4534273d9f13SBarry Smith 45352ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4536a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4537da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4538273d9f13SBarry Smith .vb 453927430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 454027430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 454127430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4542273d9f13SBarry Smith .ve 4543273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4544273d9f13SBarry Smith hence pre-allocation is perfect. 4545273d9f13SBarry Smith 45461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4547727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4548727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4549273d9f13SBarry Smith @*/ 4550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4551d71ae5a4SJacob Faibussowitsch { 4552b1d57f15SBarry Smith PetscMPIInt size; 4553273d9f13SBarry Smith 4554273d9f13SBarry Smith PetscFunctionBegin; 45559566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4558273d9f13SBarry Smith if (size > 1) { 45599566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45609566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4561273d9f13SBarry Smith } else { 45629566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4564273d9f13SBarry Smith } 45653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4566273d9f13SBarry Smith } 4567195d93cdSBarry Smith 45680b98dbb4SBarry Smith /*MC 45690b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45700b98dbb4SBarry Smith 45710b98dbb4SBarry Smith Synopsis: 45720b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45730b98dbb4SBarry Smith 45740b98dbb4SBarry Smith Not Collective 45750b98dbb4SBarry Smith 45760b98dbb4SBarry Smith Input Parameter: 45770b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45780b98dbb4SBarry Smith 45790b98dbb4SBarry Smith Output Parameters: 45800b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45814cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45822ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45830b98dbb4SBarry Smith - ierr - error code 45840b98dbb4SBarry Smith 45850b98dbb4SBarry Smith Level: advanced 45860b98dbb4SBarry Smith 45870b98dbb4SBarry Smith Note: 45880b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45890b98dbb4SBarry Smith 45901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45910b98dbb4SBarry Smith M*/ 45920b98dbb4SBarry Smith 45930b98dbb4SBarry Smith /*MC 45940b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45950b98dbb4SBarry Smith 45960b98dbb4SBarry Smith Synopsis: 45970b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45980b98dbb4SBarry Smith 45990b98dbb4SBarry Smith Not Collective 46000b98dbb4SBarry Smith 46010b98dbb4SBarry Smith Input Parameters: 46020b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 46030b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 46044cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 46052ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 46060b98dbb4SBarry Smith - ierr - error code 46070b98dbb4SBarry Smith 46080b98dbb4SBarry Smith Level: advanced 46090b98dbb4SBarry Smith 46101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 46110b98dbb4SBarry Smith M*/ 46120b98dbb4SBarry Smith 4613127ca0efSMatthew Knepley /*@C 46140ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4615127ca0efSMatthew Knepley 46162ef1f0ffSBarry Smith Not Collective 4617127ca0efSMatthew Knepley 4618127ca0efSMatthew Knepley Input Parameter: 461911a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4620127ca0efSMatthew Knepley 4621127ca0efSMatthew Knepley Output Parameters: 462211a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 462311a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46242ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4625127ca0efSMatthew Knepley 46260ab4885dSBarry Smith Level: intermediate 46270ab4885dSBarry Smith 462811a5261eSBarry Smith Note: 46292ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46302ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46312ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4632127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4633127ca0efSMatthew Knepley 4634fe59aa6dSJacob Faibussowitsch Fortran Notes: 46350ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4636127ca0efSMatthew Knepley 4637fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4638127ca0efSMatthew Knepley @*/ 4639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4640d71ae5a4SJacob Faibussowitsch { 4641195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 464204cf37c7SBarry Smith PetscBool flg; 4643b1d57f15SBarry Smith 4644195d93cdSBarry Smith PetscFunctionBegin; 46459566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 464628b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 464721e72a00SBarry Smith if (Ad) *Ad = a->A; 464821e72a00SBarry Smith if (Ao) *Ao = a->B; 464921e72a00SBarry Smith if (colmap) *colmap = a->garray; 46503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4651195d93cdSBarry Smith } 4652a2243be0SBarry Smith 4653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4654d71ae5a4SJacob Faibussowitsch { 4655110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46569b8102ccSHong Zhang PetscInt *indx; 4657110bb6e1SHong Zhang PetscScalar *values; 4658421ddf4dSJunchao Zhang MatType rootType; 46599b8102ccSHong Zhang 46609b8102ccSHong Zhang PetscFunctionBegin; 46619566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4662110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4663110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4664110bb6e1SHong Zhang 466548a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4666a22543b6SHong Zhang /* Check sum(n) = N */ 4667462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 466808401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4669a22543b6SHong Zhang 46709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46719b8102ccSHong Zhang rstart -= m; 46729b8102ccSHong Zhang 4673d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46749b8102ccSHong Zhang for (i = 0; i < m; i++) { 46759566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46769566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46779566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46789b8102ccSHong Zhang } 46799b8102ccSHong Zhang 46809566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46829566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46839566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46849566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46859566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46879566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4688d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46899566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46909b8102ccSHong Zhang } 46919b8102ccSHong Zhang 4692110bb6e1SHong Zhang /* numeric phase */ 46939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46949b8102ccSHong Zhang for (i = 0; i < m; i++) { 46959566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46969b8102ccSHong Zhang Ii = i + rstart; 46979566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46989566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46999b8102ccSHong Zhang } 47009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 47019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 47023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4703c5d6d63eSBarry Smith } 4704c5d6d63eSBarry Smith 470549abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4706d71ae5a4SJacob Faibussowitsch { 470749abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 470851a7d1a8SHong Zhang 470951a7d1a8SHong Zhang PetscFunctionBegin; 47103ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 47119566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47129566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47139566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47149566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47159566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47169566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47179566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47189566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47199566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47209566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47219566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47229566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47239566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47249566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472651a7d1a8SHong Zhang } 472751a7d1a8SHong Zhang 4728c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4729c6db04a5SJed Brown #include <petscbt.h> 47304ebed01fSBarry Smith 4731d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4732d71ae5a4SJacob Faibussowitsch { 4733ce94432eSBarry Smith MPI_Comm comm; 473455d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4735b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47366497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47376497c311SBarry Smith PetscMPIInt proc, k; 4738b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47396497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4740b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 474155d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 474255d1abb9SHong Zhang MPI_Status *status; 4743fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4744dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 474555d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4746776b82aeSLisandro Dalcin PetscContainer container; 474755d1abb9SHong Zhang 474855d1abb9SHong Zhang PetscFunctionBegin; 47499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47509566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47513c2c1871SHong Zhang 47529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 475455d1abb9SHong Zhang 47559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 475628b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47579566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4759fff043a9SJunchao Zhang aa = a_a; 4760bf0cc555SLisandro Dalcin 476155d1abb9SHong Zhang bi = merge->bi; 476255d1abb9SHong Zhang bj = merge->bj; 476355d1abb9SHong Zhang buf_ri = merge->buf_ri; 476455d1abb9SHong Zhang buf_rj = merge->buf_rj; 476555d1abb9SHong Zhang 47669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47677a2fc3feSBarry Smith owners = merge->rowmap->range; 476855d1abb9SHong Zhang len_s = merge->len_s; 476955d1abb9SHong Zhang 477055d1abb9SHong Zhang /* send and recv matrix values */ 47719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47729566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 477355d1abb9SHong Zhang 47749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 477555d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 477655d1abb9SHong Zhang if (!len_s[proc]) continue; 477755d1abb9SHong Zhang i = owners[proc]; 47786497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 477955d1abb9SHong Zhang k++; 478055d1abb9SHong Zhang } 478155d1abb9SHong Zhang 47829566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47839566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47849566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 478555d1abb9SHong Zhang 47869566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47879566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 478855d1abb9SHong Zhang 478955d1abb9SHong Zhang /* insert mat values of mpimat */ 47909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47919566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 479255d1abb9SHong Zhang 479355d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 479455d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4795f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 479655d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4797a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 479855d1abb9SHong Zhang } 479955d1abb9SHong Zhang 480055d1abb9SHong Zhang /* set values of ba */ 48017a2fc3feSBarry Smith m = merge->rowmap->n; 480255d1abb9SHong Zhang for (i = 0; i < m; i++) { 480355d1abb9SHong Zhang arow = owners[rank] + i; 480455d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 480555d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 48069566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 480755d1abb9SHong Zhang 480855d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 480955d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 481055d1abb9SHong Zhang aj = a->j + ai[arow]; 4811fff043a9SJunchao Zhang aa = a_a + ai[arow]; 481255d1abb9SHong Zhang nextaj = 0; 481355d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481455d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481555d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481655d1abb9SHong Zhang } 481755d1abb9SHong Zhang } 481855d1abb9SHong Zhang 481955d1abb9SHong Zhang /* add received vals into ba */ 482055d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 482155d1abb9SHong Zhang /* i-th row */ 482255d1abb9SHong Zhang if (i == *nextrow[k]) { 482355d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4824f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4825f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 482655d1abb9SHong Zhang nextaj = 0; 482755d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 482855d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 482955d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 483055d1abb9SHong Zhang } 483155d1abb9SHong Zhang } 48329371c9d4SSatish Balay nextrow[k]++; 48339371c9d4SSatish Balay nextai[k]++; 483455d1abb9SHong Zhang } 483555d1abb9SHong Zhang } 48369566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 483755d1abb9SHong Zhang } 48389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 484155d1abb9SHong Zhang 48429566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48439566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48449566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48459566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 484855d1abb9SHong Zhang } 484938f152feSBarry Smith 4850d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4851d71ae5a4SJacob Faibussowitsch { 485255a3bba9SHong Zhang Mat B_mpi; 4853c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4854b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4855b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4856d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48576497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4858c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4859b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 486055d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 486158cb9c82SHong Zhang MPI_Status *status; 48620298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4863be0fcf8dSHong Zhang PetscBT lnkbt; 486451a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4865776b82aeSLisandro Dalcin PetscContainer container; 486602c68681SHong Zhang 4867e5f2cdd8SHong Zhang PetscFunctionBegin; 48689566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48693c2c1871SHong Zhang 487038f152feSBarry Smith /* make sure it is a PETSc comm */ 48719566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 487455d1abb9SHong Zhang 48759566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4877e5f2cdd8SHong Zhang 48786abd8857SHong Zhang /* determine row ownership */ 48799566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 488655d1abb9SHong Zhang 48877a2fc3feSBarry Smith m = merge->rowmap->n; 48887a2fc3feSBarry Smith owners = merge->rowmap->range; 48896abd8857SHong Zhang 48906abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48913e06a4e6SHong Zhang len_s = merge->len_s; 489251a7d1a8SHong Zhang 48932257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4894c2234fe3SHong Zhang merge->nsend = 0; 48956497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48962257cef7SHong Zhang len_si[proc] = 0; 48973e06a4e6SHong Zhang if (proc == rank) { 48986abd8857SHong Zhang len_s[proc] = 0; 48993e06a4e6SHong Zhang } else { 49006497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 49016497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 49023e06a4e6SHong Zhang } 49033e06a4e6SHong Zhang if (len_s[proc]) { 4904c2234fe3SHong Zhang merge->nsend++; 49052257cef7SHong Zhang nrows = 0; 49062257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49072257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 49082257cef7SHong Zhang } 49096497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 49102257cef7SHong Zhang len += len_si[proc]; 4911409913e3SHong Zhang } 491258cb9c82SHong Zhang } 4913409913e3SHong Zhang 49142257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49159566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49169566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4917671beff6SHong Zhang 49183e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49199566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49209566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 492102c68681SHong Zhang 49223e06a4e6SHong Zhang /* post the Isend of j-structure */ 49239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49243e06a4e6SHong Zhang 49256497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4926409913e3SHong Zhang if (!len_s[proc]) continue; 492702c68681SHong Zhang i = owners[proc]; 49286497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 492951a7d1a8SHong Zhang k++; 493051a7d1a8SHong Zhang } 493151a7d1a8SHong Zhang 49323e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49339566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49349566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 493502c68681SHong Zhang 493602c68681SHong Zhang /* send and recv i-structure */ 49379566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49389566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 493902c68681SHong Zhang 49409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49413e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49426497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 494302c68681SHong Zhang if (!len_s[proc]) continue; 49443e06a4e6SHong Zhang /* form outgoing message for i-structure: 49453e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49463e06a4e6SHong Zhang [1:nrows]: row index (global) 49473e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49483e06a4e6SHong Zhang */ 49492257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49503e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49513e06a4e6SHong Zhang buf_si[0] = nrows; 49523e06a4e6SHong Zhang buf_si_i[0] = 0; 49533e06a4e6SHong Zhang nrows = 0; 49543e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49553e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49563e06a4e6SHong Zhang if (anzi) { 49573e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49583e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49593e06a4e6SHong Zhang nrows++; 49603e06a4e6SHong Zhang } 49613e06a4e6SHong Zhang } 49626497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 496302c68681SHong Zhang k++; 49642257cef7SHong Zhang buf_si += len_si[proc]; 496502c68681SHong Zhang } 49662257cef7SHong Zhang 49679566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49689566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 496902c68681SHong Zhang 49709566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 497148a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49723e06a4e6SHong Zhang 49739566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49749566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49759566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49769566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49779566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49789566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49799566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 498058cb9c82SHong Zhang 4981bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 498258cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 498458cb9c82SHong Zhang bi[0] = 0; 498558cb9c82SHong Zhang 4986be0fcf8dSHong Zhang /* create and initialize a linked list */ 4987be0fcf8dSHong Zhang nlnk = N + 1; 49889566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 498958cb9c82SHong Zhang 4990bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4991bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49929566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49932205254eSKarl Rupp 499458cb9c82SHong Zhang current_space = free_space; 499558cb9c82SHong Zhang 4996bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49979566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49981d79065fSBarry Smith 49993e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 50002257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 50013e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 50023e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 5003a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 50043e06a4e6SHong Zhang } 50052257cef7SHong Zhang 5006d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 5007bcc1bcd5SHong Zhang len = 0; 500858cb9c82SHong Zhang for (i = 0; i < m; i++) { 500958cb9c82SHong Zhang bnzi = 0; 501058cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 501158cb9c82SHong Zhang arow = owners[rank] + i; 501258cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 501358cb9c82SHong Zhang aj = a->j + ai[arow]; 50149566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 501558cb9c82SHong Zhang bnzi += nlnk; 501658cb9c82SHong Zhang /* add received col data into lnk */ 501751a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 501855d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50193e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50203e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50219566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50223e06a4e6SHong Zhang bnzi += nlnk; 50239371c9d4SSatish Balay nextrow[k]++; 50249371c9d4SSatish Balay nextai[k]++; 50253e06a4e6SHong Zhang } 502658cb9c82SHong Zhang } 5027bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 502858cb9c82SHong Zhang 502958cb9c82SHong Zhang /* if free space is not available, make more free space */ 503048a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 503158cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50329566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50339566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5034bcc1bcd5SHong Zhang 503558cb9c82SHong Zhang current_space->array += bnzi; 503658cb9c82SHong Zhang current_space->local_used += bnzi; 503758cb9c82SHong Zhang current_space->local_remaining -= bnzi; 503858cb9c82SHong Zhang 503958cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 504058cb9c82SHong Zhang } 5041bcc1bcd5SHong Zhang 50429566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5043bcc1bcd5SHong Zhang 50449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50459566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50469566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5047409913e3SHong Zhang 5048bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50499566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50509566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 505154b84b50SHong Zhang if (n == PETSC_DECIDE) { 50529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 505354b84b50SHong Zhang } else { 50549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 505554b84b50SHong Zhang } 50569566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50579566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50589566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5059d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50609566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 506158cb9c82SHong Zhang 506290431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50636abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5064affca5deSHong Zhang merge->bi = bi; 5065affca5deSHong Zhang merge->bj = bj; 506602c68681SHong Zhang merge->buf_ri = buf_ri; 506702c68681SHong Zhang merge->buf_rj = buf_rj; 50680298fd71SBarry Smith merge->coi = NULL; 50690298fd71SBarry Smith merge->coj = NULL; 50700298fd71SBarry Smith merge->owners_co = NULL; 5071affca5deSHong Zhang 50729566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5073bf0cc555SLisandro Dalcin 5074affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50759566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50769566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 507749abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50789566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50799566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5080affca5deSHong Zhang *mpimat = B_mpi; 508138f152feSBarry Smith 50829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5084e5f2cdd8SHong Zhang } 508525616d81SHong Zhang 5086cc4c1da9SBarry Smith /*@ 508711a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5088d4036a1aSHong Zhang matrices from each processor 5089d4036a1aSHong Zhang 5090d083f849SBarry Smith Collective 5091d4036a1aSHong Zhang 5092d4036a1aSHong Zhang Input Parameters: 5093d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5094d4036a1aSHong Zhang . seqmat - the input sequential matrices 509511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 509611a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 509711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5098d4036a1aSHong Zhang 5099d4036a1aSHong Zhang Output Parameter: 5100d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5101d4036a1aSHong Zhang 5102d4036a1aSHong Zhang Level: advanced 5103d4036a1aSHong Zhang 510411a5261eSBarry Smith Note: 5105d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5106d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5107b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 51082ef1f0ffSBarry Smith 51091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5110d4036a1aSHong Zhang @*/ 5111d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5112d71ae5a4SJacob Faibussowitsch { 51137e63b356SHong Zhang PetscMPIInt size; 511455d1abb9SHong Zhang 511555d1abb9SHong Zhang PetscFunctionBegin; 51169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51177e63b356SHong Zhang if (size == 1) { 51189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51197e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51209566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51217e63b356SHong Zhang } else { 51229566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51237e63b356SHong Zhang } 51249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51267e63b356SHong Zhang } 51279566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 512848a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51299566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 513255d1abb9SHong Zhang } 51334ebed01fSBarry Smith 5134bc08b0f1SBarry Smith /*@ 51352920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51368a9c020eSBarry Smith 51378a9c020eSBarry Smith Not Collective 51388a9c020eSBarry Smith 51392fe279fdSBarry Smith Input Parameter: 514020f4b53cSBarry Smith . A - the matrix 51418a9c020eSBarry Smith 51428a9c020eSBarry Smith Output Parameter: 51438a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51448a9c020eSBarry Smith 51458a9c020eSBarry Smith Level: developer 51468a9c020eSBarry Smith 51478a9c020eSBarry Smith Notes: 51482920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51492920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51502920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51512920cce0SJacob Faibussowitsch 515211a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51538a9c020eSBarry Smith 51542920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51552920cce0SJacob Faibussowitsch 515611a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51578a9c020eSBarry Smith 51581cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51598a9c020eSBarry Smith @*/ 5160d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5161d71ae5a4SJacob Faibussowitsch { 51628a9c020eSBarry Smith PetscBool mpi; 51638a9c020eSBarry Smith 51648a9c020eSBarry Smith PetscFunctionBegin; 51658a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51668a9c020eSBarry Smith if (mpi) { 51678a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51688a9c020eSBarry Smith } else { 51698a9c020eSBarry Smith *A_loc = A; 51708a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51718a9c020eSBarry Smith } 51723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51738a9c020eSBarry Smith } 51748a9c020eSBarry Smith 51758a9c020eSBarry Smith /*@ 51762920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 517725616d81SHong Zhang 517832fba14fSHong Zhang Not Collective 517925616d81SHong Zhang 518025616d81SHong Zhang Input Parameters: 518125616d81SHong Zhang + A - the matrix 518211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 518325616d81SHong Zhang 518425616d81SHong Zhang Output Parameter: 518525616d81SHong Zhang . A_loc - the local sequential matrix generated 518625616d81SHong Zhang 518725616d81SHong Zhang Level: developer 518825616d81SHong Zhang 518977c65a98SStefano Zampini Notes: 51902920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51912920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51922920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51932920cce0SJacob Faibussowitsch 519411a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51958a9c020eSBarry Smith 51962920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51972920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51982920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51992920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 520077c65a98SStefano Zampini 52011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 520225616d81SHong Zhang @*/ 5203d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5204d71ae5a4SJacob Faibussowitsch { 520501b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5206b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5207b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5208ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5209ce496241SStefano Zampini PetscScalar *ca, *cam; 521077c65a98SStefano Zampini PetscMPIInt size; 5211d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52125a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52138661ff28SBarry Smith PetscBool match; 521425616d81SHong Zhang 521525616d81SHong Zhang PetscFunctionBegin; 52169566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 521728b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 521977c65a98SStefano Zampini if (size == 1) { 522077c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52219566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 522277c65a98SStefano Zampini *A_loc = mpimat->A; 522377c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52249566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 522577c65a98SStefano Zampini } 52263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522777c65a98SStefano Zampini } 522870a9ba44SHong Zhang 52299566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5230f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5231f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52329371c9d4SSatish Balay ai = a->i; 52339371c9d4SSatish Balay aj = a->j; 52349371c9d4SSatish Balay bi = b->i; 52359371c9d4SSatish Balay bj = b->j; 52369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5238ce496241SStefano Zampini aa = aav; 5239ce496241SStefano Zampini ba = bav; 524001b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5242dea91ad1SHong Zhang ci[0] = 0; 5243ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5246dea91ad1SHong Zhang k = 0; 524701b7ae99SHong Zhang for (i = 0; i < am; i++) { 52485a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52495a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 525001b7ae99SHong Zhang /* off-diagonal portion of A */ 52515a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52525a7d977cSHong Zhang col = cmap[*bj]; 52535a7d977cSHong Zhang if (col >= cstart) break; 52549371c9d4SSatish Balay cj[k] = col; 52559371c9d4SSatish Balay bj++; 52565a7d977cSHong Zhang ca[k++] = *ba++; 52575a7d977cSHong Zhang } 52585a7d977cSHong Zhang /* diagonal portion of A */ 52595a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52605a7d977cSHong Zhang cj[k] = cstart + *aj++; 52615a7d977cSHong Zhang ca[k++] = *aa++; 52625a7d977cSHong Zhang } 52635a7d977cSHong Zhang /* off-diagonal portion of A */ 52645a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52655a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52665a7d977cSHong Zhang ca[k++] = *ba++; 52675a7d977cSHong Zhang } 526825616d81SHong Zhang } 5269dea91ad1SHong Zhang /* put together the new matrix */ 52709566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5271dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5272dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5273dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5274e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5275e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5276dea91ad1SHong Zhang mat->nonew = 0; 52775a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52785a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5279fff043a9SJunchao Zhang ci = mat->i; 5280fff043a9SJunchao Zhang cj = mat->j; 52819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52825a7d977cSHong Zhang for (i = 0; i < am; i++) { 52835a7d977cSHong Zhang /* off-diagonal portion of A */ 52845a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52855a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52865a7d977cSHong Zhang col = cmap[*bj]; 52875a7d977cSHong Zhang if (col >= cstart) break; 52889371c9d4SSatish Balay *cam++ = *ba++; 52899371c9d4SSatish Balay bj++; 52905a7d977cSHong Zhang } 52915a7d977cSHong Zhang /* diagonal portion of A */ 5292ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5293a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52945a7d977cSHong Zhang /* off-diagonal portion of A */ 5295f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52969371c9d4SSatish Balay *cam++ = *ba++; 52979371c9d4SSatish Balay bj++; 5298f33d1a9aSHong Zhang } 52995a7d977cSHong Zhang } 53009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 530198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 53039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 53049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 530625616d81SHong Zhang } 530725616d81SHong Zhang 5308ed502f03SStefano Zampini /*@ 530911a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 53104cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5311ed502f03SStefano Zampini 5312ed502f03SStefano Zampini Not Collective 5313ed502f03SStefano Zampini 5314ed502f03SStefano Zampini Input Parameters: 5315ed502f03SStefano Zampini + A - the matrix 531611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5317ed502f03SStefano Zampini 5318d8d19677SJose E. Roman Output Parameters: 53192ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5320ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5321ed502f03SStefano Zampini 5322ed502f03SStefano Zampini Level: developer 5323ed502f03SStefano Zampini 532411a5261eSBarry Smith Note: 53252ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53264cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5327ed502f03SStefano Zampini 53281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5329ed502f03SStefano Zampini @*/ 5330d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5331d71ae5a4SJacob Faibussowitsch { 5332ed502f03SStefano Zampini Mat Ao, Ad; 5333ed502f03SStefano Zampini const PetscInt *cmap; 5334ed502f03SStefano Zampini PetscMPIInt size; 5335ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5336ed502f03SStefano Zampini 5337ed502f03SStefano Zampini PetscFunctionBegin; 53389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5340ed502f03SStefano Zampini if (size == 1) { 5341ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53429566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5343ed502f03SStefano Zampini *A_loc = Ad; 5344ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53459566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5346ed502f03SStefano Zampini } 53479566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5349ed502f03SStefano Zampini } 53509566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5352ed502f03SStefano Zampini if (f) { 53539566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5354ed502f03SStefano Zampini } else { 5355ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5356ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5357ed502f03SStefano Zampini Mat_SeqAIJ *c; 5358ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5359ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5360ed502f03SStefano Zampini PetscInt *ci, *cj; 5361ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5362ed502f03SStefano Zampini PetscScalar *ca; 5363ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5364ed502f03SStefano Zampini 53659566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53669566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5369ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5370ed502f03SStefano Zampini PetscInt k; 53719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5374ed502f03SStefano Zampini ci[0] = 0; 5375ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5376ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5377ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5378ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5379ed502f03SStefano Zampini /* diagonal portion of A */ 5380ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5381ed502f03SStefano Zampini cj[k] = *aj++; 5382ed502f03SStefano Zampini ca[k] = *aa++; 5383ed502f03SStefano Zampini } 5384ed502f03SStefano Zampini /* off-diagonal portion of A */ 5385ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5386ed502f03SStefano Zampini cj[k] = dn + *bj++; 5387ed502f03SStefano Zampini ca[k] = *ba++; 5388ed502f03SStefano Zampini } 5389ed502f03SStefano Zampini } 5390ed502f03SStefano Zampini /* put together the new matrix */ 53919566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5392ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5393ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5394ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5395ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5396ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5397ed502f03SStefano Zampini c->nonew = 0; 53989566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5399ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 54009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5401ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5402ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5403ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5404ed502f03SStefano Zampini /* diagonal portion of A */ 5405ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5406ed502f03SStefano Zampini /* off-diagonal portion of A */ 5407ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5408ed502f03SStefano Zampini } 54099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 541098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 54119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5413ed502f03SStefano Zampini if (glob) { 5414ed502f03SStefano Zampini PetscInt cst, *gidx; 5415ed502f03SStefano Zampini 54169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5418ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5419ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5421ed502f03SStefano Zampini } 5422ed502f03SStefano Zampini } 54239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5425ed502f03SStefano Zampini } 5426ed502f03SStefano Zampini 542732fba14fSHong Zhang /*@C 542811a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 542932fba14fSHong Zhang 543032fba14fSHong Zhang Not Collective 543132fba14fSHong Zhang 543232fba14fSHong Zhang Input Parameters: 543332fba14fSHong Zhang + A - the matrix 543411a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 543520f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 543620f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 543732fba14fSHong Zhang 543832fba14fSHong Zhang Output Parameter: 543932fba14fSHong Zhang . A_loc - the local sequential matrix generated 544032fba14fSHong Zhang 544132fba14fSHong Zhang Level: developer 544232fba14fSHong Zhang 54431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 544432fba14fSHong Zhang @*/ 5445d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5446d71ae5a4SJacob Faibussowitsch { 544732fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 544832fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 544932fba14fSHong Zhang IS isrowa, iscola; 545032fba14fSHong Zhang Mat *aloc; 54514a2b5492SBarry Smith PetscBool match; 545232fba14fSHong Zhang 545332fba14fSHong Zhang PetscFunctionBegin; 54549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 545528b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 545732fba14fSHong Zhang if (!row) { 54589371c9d4SSatish Balay start = A->rmap->rstart; 54599371c9d4SSatish Balay end = A->rmap->rend; 54609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 546132fba14fSHong Zhang } else { 546232fba14fSHong Zhang isrowa = *row; 546332fba14fSHong Zhang } 546432fba14fSHong Zhang if (!col) { 5465d0f46423SBarry Smith start = A->cmap->rstart; 546632fba14fSHong Zhang cmap = a->garray; 5467d0f46423SBarry Smith nzA = a->A->cmap->n; 5468d0f46423SBarry Smith nzB = a->B->cmap->n; 54699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 547032fba14fSHong Zhang ncols = 0; 547132fba14fSHong Zhang for (i = 0; i < nzB; i++) { 547232fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 547332fba14fSHong Zhang else break; 547432fba14fSHong Zhang } 547532fba14fSHong Zhang imark = i; 547632fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 547732fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54789566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 547932fba14fSHong Zhang } else { 548032fba14fSHong Zhang iscola = *col; 548132fba14fSHong Zhang } 548232fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 548432fba14fSHong Zhang aloc[0] = *A_loc; 548532fba14fSHong Zhang } 54869566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5487109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54889566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5489109e0772SStefano Zampini } 549032fba14fSHong Zhang *A_loc = aloc[0]; 54919566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 549248a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 549348a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54949566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 549632fba14fSHong Zhang } 549732fba14fSHong Zhang 54985c65b9ecSFande Kong /* 54995c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 55005c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 55015c65b9ecSFande Kong * on a global size. 55025c65b9ecSFande Kong * */ 5503ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5504d71ae5a4SJacob Faibussowitsch { 55055c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5506f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5507131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5508131c27b5Sprj- PetscMPIInt owner; 55095c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 55105c65b9ecSFande Kong const PetscInt *lrowindices; 55115c65b9ecSFande Kong PetscSF sf, osf; 55125c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55135c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55145c65b9ecSFande Kong MPI_Comm comm; 55155c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5516fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55175c65b9ecSFande Kong 55185c65b9ecSFande Kong PetscFunctionBegin; 55199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55205c65b9ecSFande Kong /* plocalsize is the number of roots 55215c65b9ecSFande Kong * nrows is the number of leaves 55225c65b9ecSFande Kong * */ 55239566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55249566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55275c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55285c65b9ecSFande Kong /* Find a remote index and an owner for a row 55295c65b9ecSFande Kong * The row could be local or remote 55305c65b9ecSFande Kong * */ 553134bcad68SFande Kong owner = 0; 553234bcad68SFande Kong lidx = 0; 55339566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55345c65b9ecSFande Kong iremote[i].index = lidx; 55355c65b9ecSFande Kong iremote[i].rank = owner; 55365c65b9ecSFande Kong } 55375c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55389566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5539f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55405c65b9ecSFande Kong * offsets 55415c65b9ecSFande Kong * */ 55429566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55439566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55449566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5545bc8e477aSFande Kong 55469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55495c65b9ecSFande Kong roffsets[0] = 0; 55505c65b9ecSFande Kong roffsets[1] = 0; 55515c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55524cf0e950SBarry Smith /* diagonal */ 55535c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55544cf0e950SBarry Smith /* off-diagonal */ 55555c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55565c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55575c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55585c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55595c65b9ecSFande Kong } 55609566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55619566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55625c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55689566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55699566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55705c65b9ecSFande Kong dntotalcols = 0; 55715c65b9ecSFande Kong ontotalcols = 0; 5572bc8e477aSFande Kong ncol = 0; 55735c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55745c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5575bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55764cf0e950SBarry Smith /* diagonal */ 55775c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55784cf0e950SBarry Smith /* off-diagonal */ 55795c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55805c65b9ecSFande Kong } 55815c65b9ecSFande Kong /* We do not need to figure the right number of columns 55825c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55835c65b9ecSFande Kong * */ 55849566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55859566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55869566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55875c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55884cf0e950SBarry Smith /* diagonal */ 55899566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55904cf0e950SBarry Smith /* off-diagonal */ 55919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55924cf0e950SBarry Smith /* diagonal */ 55939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55944cf0e950SBarry Smith /* off-diagonal */ 55959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55965c65b9ecSFande Kong dntotalcols = 0; 55975c65b9ecSFande Kong ontotalcols = 0; 55985c65b9ecSFande Kong ntotalcols = 0; 55995c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 560034bcad68SFande Kong owner = 0; 56019566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 56025c65b9ecSFande Kong /* Set iremote for diag matrix */ 56035c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 56045c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 56055c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 56065c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 56075c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 56085c65b9ecSFande Kong } 56094cf0e950SBarry Smith /* off-diagonal */ 56105c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 56115c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56125c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56135c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56145c65b9ecSFande Kong } 56155c65b9ecSFande Kong } 56169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56179566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56189566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56199566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56205c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56215c65b9ecSFande Kong * Diag matrix 56225c65b9ecSFande Kong * */ 56239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56259566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56265c65b9ecSFande Kong 56279566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56284cf0e950SBarry Smith /* off-diagonal */ 56299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56309566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56344cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56369566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56379566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56385c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56395c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56415c65b9ecSFande Kong /* We want P_oth store global indices */ 56429566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56435c65b9ecSFande Kong /* Use memory scalable approach */ 56449566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56459566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56485c65b9ecSFande Kong /* Convert back to local indices */ 56495c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56515c65b9ecSFande Kong nout = 0; 56529566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 565308401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56555c65b9ecSFande Kong /* Exchange values */ 56569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56605c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56615c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56645c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56669566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56705c65b9ecSFande Kong } 56715c65b9ecSFande Kong 56725c65b9ecSFande Kong /* 56735c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56745c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56755c65b9ecSFande Kong * */ 5676d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5677d71ae5a4SJacob Faibussowitsch { 56785c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5679bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5680bc8e477aSFande Kong IS rows, map; 5681bc8e477aSFande Kong PetscHMapI hamp; 5682bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56835c65b9ecSFande Kong MPI_Comm comm; 56845c65b9ecSFande Kong PetscSF sf, osf; 5685bc8e477aSFande Kong PetscBool has; 56865c65b9ecSFande Kong 56875c65b9ecSFande Kong PetscFunctionBegin; 56889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56899566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56905c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56915c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56925c65b9ecSFande Kong * */ 56935c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56945c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5695eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5697bc8e477aSFande Kong count = 0; 5698bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5699bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5700bc8e477aSFande Kong key = a->garray[i] / dof; 57019566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5702bc8e477aSFande Kong if (!has) { 5703bc8e477aSFande Kong mapping[i] = count; 57049566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5705bc8e477aSFande Kong } else { 5706bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5707bc8e477aSFande Kong mapping[i] = count - 1; 57085c65b9ecSFande Kong } 5709bc8e477aSFande Kong } 57109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 57119566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5712eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57139566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57145c65b9ecSFande Kong off = 0; 57159566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57169566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57179566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57189566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57195c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57209566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57219566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57255c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57265c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 572735cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5728fff043a9SJunchao Zhang */ 5729fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5730fff043a9SJunchao Zhang 57319566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57329566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 573308401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57345c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57355c65b9ecSFande Kong /* Update values in place */ 57369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57446718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57475c65b9ecSFande Kong } 57485c65b9ecSFande Kong 574925616d81SHong Zhang /*@C 575020f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 575125616d81SHong Zhang 5752c3339decSBarry Smith Collective 575325616d81SHong Zhang 575425616d81SHong Zhang Input Parameters: 575511a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 575611a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 575711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 575825616d81SHong Zhang 5759f1a722f8SMatthew G. Knepley Output Parameters: 576027430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 576127430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5762f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 576325616d81SHong Zhang 576425616d81SHong Zhang Level: developer 576525616d81SHong Zhang 576620f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 576725616d81SHong Zhang @*/ 5768d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5769d71ae5a4SJacob Faibussowitsch { 5770899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5771b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 577225616d81SHong Zhang IS isrowb, iscolb; 57730298fd71SBarry Smith Mat *bseq = NULL; 577425616d81SHong Zhang 577525616d81SHong Zhang PetscFunctionBegin; 577620f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 577720f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 577925616d81SHong Zhang 578025616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5781d0f46423SBarry Smith start = A->cmap->rstart; 578225616d81SHong Zhang cmap = a->garray; 5783d0f46423SBarry Smith nzA = a->A->cmap->n; 5784d0f46423SBarry Smith nzB = a->B->cmap->n; 57859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 578625616d81SHong Zhang ncols = 0; 57870390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 578825616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 578925616d81SHong Zhang else break; 579025616d81SHong Zhang } 579125616d81SHong Zhang imark = i; 57920390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57930390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57949566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57959566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 579625616d81SHong Zhang } else { 579708401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57989371c9d4SSatish Balay isrowb = *rowb; 57999371c9d4SSatish Balay iscolb = *colb; 58009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 580125616d81SHong Zhang bseq[0] = *B_seq; 580225616d81SHong Zhang } 58039566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 580425616d81SHong Zhang *B_seq = bseq[0]; 58059566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 580625616d81SHong Zhang if (!rowb) { 58079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 580825616d81SHong Zhang } else { 580925616d81SHong Zhang *rowb = isrowb; 581025616d81SHong Zhang } 581125616d81SHong Zhang if (!colb) { 58129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 581325616d81SHong Zhang } else { 581425616d81SHong Zhang *colb = iscolb; 581525616d81SHong Zhang } 58169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 581825616d81SHong Zhang } 5819429d309bSHong Zhang 5820f8487c73SHong Zhang /* 582127430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 582201b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5823429d309bSHong Zhang 5824c3339decSBarry Smith Collective 5825429d309bSHong Zhang 5826429d309bSHong Zhang Input Parameters: 582727430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 582827430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5829429d309bSHong Zhang 5830429d309bSHong Zhang Output Parameter: 58310298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58320298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58330298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5834598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5835429d309bSHong Zhang 583611a5261eSBarry Smith Developer Note: 583711a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58386eb45d04SBarry Smith for this matrix. This is not desirable.. 58396eb45d04SBarry Smith 5840429d309bSHong Zhang Level: developer 5841429d309bSHong Zhang 5842f8487c73SHong Zhang */ 58436497c311SBarry Smith 5844d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5845d71ae5a4SJacob Faibussowitsch { 5846899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58474b8d542aSHong Zhang VecScatter ctx; 5848ce94432eSBarry Smith MPI_Comm comm; 58493515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58506497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58513515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5852277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58536497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5854277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5855ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5856ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5857429d309bSHong Zhang 5858429d309bSHong Zhang PetscFunctionBegin; 58599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5861a7c7454dSHong Zhang 586220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 586320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58649566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5866a6b2eed2SHong Zhang 5867ec07b8f8SHong Zhang if (size == 1) { 5868ec07b8f8SHong Zhang startsj_s = NULL; 5869ec07b8f8SHong Zhang bufa_ptr = NULL; 587052f7967eSHong Zhang *B_oth = NULL; 58713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5872ec07b8f8SHong Zhang } 5873ec07b8f8SHong Zhang 5874fa83eaafSHong Zhang ctx = a->Mvctx; 58754b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58764b8d542aSHong Zhang 58779566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58783515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58799566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58809566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5882ddea5d60SJunchao Zhang rwaits = reqs; 58838e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5884429d309bSHong Zhang 5885b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5886429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5887a6b2eed2SHong Zhang /* i-array */ 5888a6b2eed2SHong Zhang /* post receives */ 58899566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5890a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 589174268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5892e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58936497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5894429d309bSHong Zhang } 5895a6b2eed2SHong Zhang 5896a6b2eed2SHong Zhang /* pack the outgoing message */ 58979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58982205254eSKarl Rupp 58992205254eSKarl Rupp sstartsj[0] = 0; 59002205254eSKarl Rupp rstartsj[0] = 0; 5901a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 59023515ee7fSJunchao Zhang if (nsends) { 59033515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 59049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 59053515ee7fSJunchao Zhang } 5906a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 59073515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5908e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 590987025532SHong Zhang for (j = 0; j < nrows; j++) { 5910d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5911e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59129566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59132205254eSKarl Rupp 5914e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59152205254eSKarl Rupp 5916e42f35eeSHong Zhang len += ncols; 59179566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5918e42f35eeSHong Zhang } 5919a6b2eed2SHong Zhang k++; 5920429d309bSHong Zhang } 59216497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59222205254eSKarl Rupp 5923dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5924429d309bSHong Zhang } 592587025532SHong Zhang /* recvs and sends of i-array are completed */ 59269566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59279566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5928e42f35eeSHong Zhang 5929a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5932a6b2eed2SHong Zhang 593387025532SHong Zhang /* create i-array of B_oth */ 59349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59352205254eSKarl Rupp 593687025532SHong Zhang b_othi[0] = 0; 5937a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5938a6b2eed2SHong Zhang k = 0; 5939a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59403515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59413515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 594287025532SHong Zhang for (j = 0; j < nrows; j++) { 594387025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59449566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5945f91af8c7SBarry Smith k++; 5946a6b2eed2SHong Zhang } 5947dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5948a6b2eed2SHong Zhang } 59499566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5950a6b2eed2SHong Zhang 59516aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5954a6b2eed2SHong Zhang 595587025532SHong Zhang /* j-array */ 5956a6b2eed2SHong Zhang /* post receives of j-array */ 5957a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 595887025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59596497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5960a6b2eed2SHong Zhang } 5961e42f35eeSHong Zhang 5962e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59633515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5964a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5965e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5966a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 596787025532SHong Zhang for (j = 0; j < nrows; j++) { 5968d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5969e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59709566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5971ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59729566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5973e42f35eeSHong Zhang } 597487025532SHong Zhang } 59756497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 597687025532SHong Zhang } 597787025532SHong Zhang 597887025532SHong Zhang /* recvs and sends of j-array are completed */ 59799566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 598087025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5981b7f45c76SHong Zhang sstartsj = *startsj_s; 59821d79065fSBarry Smith rstartsj = *startsj_r; 598387025532SHong Zhang bufa = *bufa_ptr; 59849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5985ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 598687025532SHong Zhang 598787025532SHong Zhang /* a-array */ 598887025532SHong Zhang /* post receives of a-array */ 598987025532SHong Zhang for (i = 0; i < nrecvs; i++) { 599087025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59916497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 599287025532SHong Zhang } 5993e42f35eeSHong Zhang 5994e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59953515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 599687025532SHong Zhang for (i = 0; i < nsends; i++) { 5997e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 599887025532SHong Zhang bufA = bufa + sstartsj[i]; 599987025532SHong Zhang for (j = 0; j < nrows; j++) { 6000d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 6001e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 60029566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6003ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 60049566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6005e42f35eeSHong Zhang } 6006a6b2eed2SHong Zhang } 60076497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 6008a6b2eed2SHong Zhang } 600987025532SHong Zhang /* recvs and sends of a-array are completed */ 60109566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60119566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6012a6b2eed2SHong Zhang 601387025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6014dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 6015dd460d27SBarry Smith 6016a6b2eed2SHong Zhang /* put together the new matrix */ 60179566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6018a6b2eed2SHong Zhang 6019a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6020a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 602187025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6022e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6023e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 602487025532SHong Zhang b_oth->nonew = 0; 6025a6b2eed2SHong Zhang 60269566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6027b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60289566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60299566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6030dea91ad1SHong Zhang } else { 6031b7f45c76SHong Zhang *startsj_s = sstartsj; 60321d79065fSBarry Smith *startsj_r = rstartsj; 603387025532SHong Zhang *bufa_ptr = bufa; 603487025532SHong Zhang } 6035fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6037dea91ad1SHong Zhang } 60383515ee7fSJunchao Zhang 60399566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60409566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6043429d309bSHong Zhang } 6044ccd8e176SBarry Smith 6045cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6046cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6047ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60489779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6049a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6050191b95cbSRichard Tran Mills #endif 6051ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6052cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60535d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6054cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60555d7652ecSHong Zhang #endif 6056d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6057d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6058d24d4204SJose E. Roman #endif 605963c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 606063c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 606163c07aadSStefano Zampini #endif 60623338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60633338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60643338378cSStefano Zampini #endif 6065d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6066d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6067d5e393b6SSuyash Tandon #endif 60683d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60693d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60703d0639e7SStefano Zampini #endif 6071d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60724222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60734222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 607417667f90SBarry Smith 6075fc4dec0aSBarry Smith /* 6076fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6077fc4dec0aSBarry Smith 6078fc4dec0aSBarry Smith n p p 60792da392ccSBarry Smith [ ] [ ] [ ] 60802da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60812da392ccSBarry Smith [ ] [ ] [ ] 6082fc4dec0aSBarry Smith 6083fc4dec0aSBarry Smith */ 6084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6085d71ae5a4SJacob Faibussowitsch { 6086fc4dec0aSBarry Smith Mat At, Bt, Ct; 6087fc4dec0aSBarry Smith 6088fc4dec0aSBarry Smith PetscFunctionBegin; 60899566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60909566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6091fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60929566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60947fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60959566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60969566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6098fc4dec0aSBarry Smith } 6099fc4dec0aSBarry Smith 6100d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6101d71ae5a4SJacob Faibussowitsch { 61026718818eSStefano Zampini PetscBool cisdense; 6103fc4dec0aSBarry Smith 6104fc4dec0aSBarry Smith PetscFunctionBegin; 610508401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 61069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 61079566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6108d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 610948a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 61109566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6111f75ecaa4SHong Zhang 61124222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6114fc4dec0aSBarry Smith } 6115fc4dec0aSBarry Smith 6116d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6117d71ae5a4SJacob Faibussowitsch { 61184222ddf1SHong Zhang Mat_Product *product = C->product; 61194222ddf1SHong Zhang Mat A = product->A, B = product->B; 6120fc4dec0aSBarry Smith 6121fc4dec0aSBarry Smith PetscFunctionBegin; 612220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 612320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61244222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61254222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6127fc4dec0aSBarry Smith } 6128fc4dec0aSBarry Smith 6129d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6130d71ae5a4SJacob Faibussowitsch { 61314222ddf1SHong Zhang Mat_Product *product = C->product; 61324222ddf1SHong Zhang 61334222ddf1SHong Zhang PetscFunctionBegin; 613448a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61364222ddf1SHong Zhang } 6137394ed5ebSJunchao Zhang 613827430b45SBarry Smith /* 613927430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6140394ed5ebSJunchao Zhang 6141394ed5ebSJunchao Zhang Input Parameters: 6142394ed5ebSJunchao Zhang 6143651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6144651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6145394ed5ebSJunchao Zhang 6146158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6147394ed5ebSJunchao Zhang 6148394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6149394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6150394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6151394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6152394ed5ebSJunchao Zhang 6153394ed5ebSJunchao Zhang Similar for Set2. 6154394ed5ebSJunchao Zhang 6155394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6156394ed5ebSJunchao Zhang 6157158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6158394ed5ebSJunchao Zhang 6159394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6160394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6161394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6162394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6163394ed5ebSJunchao Zhang */ 6164d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6165d71ae5a4SJacob Faibussowitsch { 6166394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6167394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6168394ed5ebSJunchao Zhang 6169394ed5ebSJunchao Zhang PetscFunctionBegin; 61709566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6171394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6172394ed5ebSJunchao Zhang i[0] = 0; 6173394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6174394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6175394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6176394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6177394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6178394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6179394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6180394ed5ebSJunchao Zhang j[t] = j1[b1]; 6181394ed5ebSJunchao Zhang imap1[t1] = t; 6182394ed5ebSJunchao Zhang imap2[t2] = t; 6183394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6184394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61859371c9d4SSatish Balay t1++; 61869371c9d4SSatish Balay t2++; 61879371c9d4SSatish Balay t++; 6188394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6189394ed5ebSJunchao Zhang j[t] = j1[b1]; 6190394ed5ebSJunchao Zhang imap1[t1] = t; 6191394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61929371c9d4SSatish Balay t1++; 61939371c9d4SSatish Balay t++; 6194394ed5ebSJunchao Zhang } else { 6195394ed5ebSJunchao Zhang j[t] = j2[b2]; 6196394ed5ebSJunchao Zhang imap2[t2] = t; 6197394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61989371c9d4SSatish Balay t2++; 61999371c9d4SSatish Balay t++; 6200394ed5ebSJunchao Zhang } 6201394ed5ebSJunchao Zhang } 6202394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6203394ed5ebSJunchao Zhang while (b1 < e1) { 6204394ed5ebSJunchao Zhang j[t] = j1[b1]; 6205394ed5ebSJunchao Zhang imap1[t1] = t; 6206394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 62079371c9d4SSatish Balay t1++; 62089371c9d4SSatish Balay t++; 6209394ed5ebSJunchao Zhang } 6210394ed5ebSJunchao Zhang while (b2 < e2) { 6211394ed5ebSJunchao Zhang j[t] = j2[b2]; 6212394ed5ebSJunchao Zhang imap2[t2] = t; 6213394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62149371c9d4SSatish Balay t2++; 62159371c9d4SSatish Balay t++; 6216394ed5ebSJunchao Zhang } 62176497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6218394ed5ebSJunchao Zhang } 62193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6220394ed5ebSJunchao Zhang } 6221394ed5ebSJunchao Zhang 622227430b45SBarry Smith /* 622327430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6224394ed5ebSJunchao Zhang 6225394ed5ebSJunchao Zhang Input Parameters: 6226394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6227394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6228394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6229394ed5ebSJunchao Zhang 6230394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6231394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6232394ed5ebSJunchao Zhang 6233394ed5ebSJunchao Zhang Output Parameters: 6234394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6235394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6236394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6237394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6238394ed5ebSJunchao Zhang 6239394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6240158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6241158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6242394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6243394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6244394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6245394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6246394ed5ebSJunchao Zhang 6247394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6248394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6249394ed5ebSJunchao Zhang 6250394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6251394ed5ebSJunchao Zhang 6252158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6253394ed5ebSJunchao Zhang */ 6254d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6255d71ae5a4SJacob Faibussowitsch { 6256394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6257394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6258394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6259394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6260394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6261394ed5ebSJunchao Zhang 6262394ed5ebSJunchao Zhang PetscFunctionBegin; 62639566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62649566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6265394ed5ebSJunchao Zhang m = rend - rstart; 6266394ed5ebSJunchao Zhang 6267651b1cf9SStefano Zampini /* Skip negative rows */ 6268651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62699371c9d4SSatish Balay if (i[k] >= 0) break; 6270394ed5ebSJunchao Zhang 6271394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6272394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6273394ed5ebSJunchao Zhang */ 6274394ed5ebSJunchao Zhang while (k < n) { 6275394ed5ebSJunchao Zhang row = i[k]; 6276394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62779371c9d4SSatish Balay for (s = k; s < n; s++) 62789371c9d4SSatish Balay if (i[s] != row) break; 6279651b1cf9SStefano Zampini 62801690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6281394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62821690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 628354c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6284394ed5ebSJunchao Zhang } 62859566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6286158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6287394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6288394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6289394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6290394ed5ebSJunchao Zhang 6291394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6292394ed5ebSJunchao Zhang Atot += mid - k; 6293394ed5ebSJunchao Zhang Btot += s - mid; 6294394ed5ebSJunchao Zhang 6295651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6296394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6297394ed5ebSJunchao Zhang col = j[p]; 62989371c9d4SSatish Balay do { 62991690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 63009371c9d4SSatish Balay p++; 6301651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6302394ed5ebSJunchao Zhang Annz++; 6303394ed5ebSJunchao Zhang } 6304394ed5ebSJunchao Zhang 6305651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6306394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6307394ed5ebSJunchao Zhang col = j[p]; 6308d71ae5a4SJacob Faibussowitsch do { 6309d71ae5a4SJacob Faibussowitsch p++; 6310d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6311394ed5ebSJunchao Zhang Bnnz++; 6312394ed5ebSJunchao Zhang } 6313394ed5ebSJunchao Zhang k = s; 6314394ed5ebSJunchao Zhang } 6315394ed5ebSJunchao Zhang 6316394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6317158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6318158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6319158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6320158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6321394ed5ebSJunchao Zhang 63226aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6323394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6324394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6325394ed5ebSJunchao Zhang k = rowBegin[r]; 6326394ed5ebSJunchao Zhang mid = rowMid[r]; 6327394ed5ebSJunchao Zhang s = rowEnd[r]; 63288e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63298e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6330394ed5ebSJunchao Zhang Atot += mid - k; 6331394ed5ebSJunchao Zhang Btot += s - mid; 6332394ed5ebSJunchao Zhang 6333394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6334394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6335394ed5ebSJunchao Zhang col = j[p]; 6336394ed5ebSJunchao Zhang q = p; 6337d71ae5a4SJacob Faibussowitsch do { 6338d71ae5a4SJacob Faibussowitsch p++; 6339d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6340394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6341394ed5ebSJunchao Zhang Annz++; 6342394ed5ebSJunchao Zhang } 6343394ed5ebSJunchao Zhang 6344394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6345394ed5ebSJunchao Zhang col = j[p]; 6346394ed5ebSJunchao Zhang q = p; 6347d71ae5a4SJacob Faibussowitsch do { 6348d71ae5a4SJacob Faibussowitsch p++; 6349d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6350394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6351394ed5ebSJunchao Zhang Bnnz++; 6352394ed5ebSJunchao Zhang } 6353394ed5ebSJunchao Zhang } 6354394ed5ebSJunchao Zhang /* Output */ 6355394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6356394ed5ebSJunchao Zhang *Annz_ = Annz; 6357394ed5ebSJunchao Zhang *Atot_ = Atot; 6358394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6359394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6360394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6361394ed5ebSJunchao Zhang *Btot_ = Btot; 6362394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6364394ed5ebSJunchao Zhang } 6365394ed5ebSJunchao Zhang 636627430b45SBarry Smith /* 636727430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6368158ec288SJunchao Zhang 6369158ec288SJunchao Zhang Input Parameters: 6370158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6371158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6372158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6373651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6374158ec288SJunchao Zhang 6375158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6376158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6377158ec288SJunchao Zhang 6378158ec288SJunchao Zhang Example: 6379158ec288SJunchao Zhang nnz1 = 4 6380158ec288SJunchao Zhang nnz = 6 6381158ec288SJunchao Zhang imap = [1,3,4,5] 6382158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6383158ec288SJunchao Zhang then, 6384158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6385158ec288SJunchao Zhang */ 6386d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6387d71ae5a4SJacob Faibussowitsch { 6388158ec288SJunchao Zhang PetscCount k, p; 6389158ec288SJunchao Zhang 6390158ec288SJunchao Zhang PetscFunctionBegin; 6391158ec288SJunchao Zhang jmap_new[0] = 0; 6392158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6393158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6394158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6395158ec288SJunchao Zhang } 6396158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6398158ec288SJunchao Zhang } 6399158ec288SJunchao Zhang 640049abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 64012c4ab24aSJunchao Zhang { 640249abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 64032c4ab24aSJunchao Zhang 64042c4ab24aSJunchao Zhang PetscFunctionBegin; 64052c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 64062c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 64072c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 64082c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 64092c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 64102c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 64112c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 64122c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64132c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64142c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64152c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64162c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64172c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64182c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64192c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64202c4ab24aSJunchao Zhang } 64212c4ab24aSJunchao Zhang 6422d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6423d71ae5a4SJacob Faibussowitsch { 6424394ed5ebSJunchao Zhang MPI_Comm comm; 6425394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6426394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6427394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6428394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64292c4ab24aSJunchao Zhang PetscContainer container; 64302c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6431394ed5ebSJunchao Zhang 6432394ed5ebSJunchao Zhang PetscFunctionBegin; 64339566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6435cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6436eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6437cbc6b225SStefano Zampini #else 64389566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6439cbc6b225SStefano Zampini #endif 64409566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6441cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6442cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6443cbc6b225SStefano Zampini 64449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64499566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64509566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64519566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64529566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6453394ed5ebSJunchao Zhang 64546aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6455394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6456394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6457e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6458e8729f6fSJunchao Zhang 6459e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6460394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6461394ed5ebSJunchao Zhang 6462394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6463394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6464394ed5ebSJunchao Zhang will have positive row indices. 6465394ed5ebSJunchao Zhang */ 6466394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64671690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64681690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6469f7d195e4SLawrence Mitchell else { 6470f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64711690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6472f7d195e4SLawrence Mitchell } 6473394ed5ebSJunchao Zhang } 6474394ed5ebSJunchao Zhang 6475da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64769566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6477651b1cf9SStefano Zampini 6478651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6479651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64801690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64816497c311SBarry Smith PetscCount i1start = k; 6482651b1cf9SStefano Zampini 64831690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64841690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6485394ed5ebSJunchao Zhang 6486394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6487394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6488394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6489394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6490394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6491394ed5ebSJunchao Zhang const PetscInt *ranges; 6492394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6493394ed5ebSJunchao Zhang 64949566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6496394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6497394ed5ebSJunchao Zhang PetscMPIInt owner; 6498394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6499cbc6b225SStefano Zampini 6500394ed5ebSJunchao Zhang /* Locate a row range */ 6501394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 65029566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6503394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6504394ed5ebSJunchao Zhang 6505394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 65069566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6507394ed5ebSJunchao Zhang 6508394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6509394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6510394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6511394ed5ebSJunchao Zhang PetscInt *nentries2; 6512394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6513cbc6b225SStefano Zampini 65149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65179566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6518394ed5ebSJunchao Zhang sendto = sendto2; 6519394ed5ebSJunchao Zhang nentries = nentries2; 6520394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6521394ed5ebSJunchao Zhang } 6522394ed5ebSJunchao Zhang sendto[nsend] = owner; 65236497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6524394ed5ebSJunchao Zhang nsend++; 6525394ed5ebSJunchao Zhang k = p; 6526394ed5ebSJunchao Zhang } 6527394ed5ebSJunchao Zhang 6528394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6529394ed5ebSJunchao Zhang PetscSF sf1; 6530394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6531394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6532394ed5ebSJunchao Zhang PetscInt *offsets; 6533394ed5ebSJunchao Zhang PetscSFNode *iremote; 6534394ed5ebSJunchao Zhang 65359566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6538394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6539394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6540394ed5ebSJunchao Zhang iremote[k].index = 0; 6541394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 654254c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6543394ed5ebSJunchao Zhang } 65449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65459566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65469566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6548e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6549394ed5ebSJunchao Zhang 6550394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6551394ed5ebSJunchao Zhang PetscSF sf2; 6552394ed5ebSJunchao Zhang nroots = nroots2; 6553394ed5ebSJunchao Zhang nleaves = nleaves2; 65549566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65559566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6557394ed5ebSJunchao Zhang p = 0; 6558394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 655954c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6560394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6561394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65626497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6563394ed5ebSJunchao Zhang } 6564394ed5ebSJunchao Zhang } 65659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6566394ed5ebSJunchao Zhang 6567394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6568394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6569394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65709566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6571834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6572834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6573de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6574de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6575834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6576834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6577834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6578834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6579394ed5ebSJunchao Zhang 65809566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65819566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6582394ed5ebSJunchao Zhang 6583394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6584394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65859566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6586394ed5ebSJunchao Zhang 6587651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6588651b1cf9SStefano Zampini PetscCount *Cperm1; 6589834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6590de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6591651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6592834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6593651b1cf9SStefano Zampini 6594651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6595651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6596651b1cf9SStefano Zampini PetscBool hypre; 659717b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6598651b1cf9SStefano Zampini if (hypre) { 6599651b1cf9SStefano Zampini PetscInt *minj; 6600651b1cf9SStefano Zampini PetscBT hasdiag; 6601651b1cf9SStefano Zampini 6602651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6603651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 66041690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6605651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6606651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6607651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6608651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6609651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6610651b1cf9SStefano Zampini } 6611651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6612651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6613651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6614651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6615651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6616651b1cf9SStefano Zampini } 6617651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6618651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6619651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6620651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6621651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6622651b1cf9SStefano Zampini } 6623651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6624651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6625651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6626651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6627651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6628651b1cf9SStefano Zampini } 6629651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6630651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6631651b1cf9SStefano Zampini } 6632651b1cf9SStefano Zampini 6633651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6634651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6635651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6636651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6637394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6638394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6639394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6640394ed5ebSJunchao Zhang 6641651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66429566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6643651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66449566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6645394ed5ebSJunchao Zhang 6646394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6647394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6648394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6649394ed5ebSJunchao Zhang 66509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6654394ed5ebSJunchao Zhang 6655394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6656158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6657158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6658158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6659158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6660394ed5ebSJunchao Zhang 66619566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66629566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6663158ec288SJunchao Zhang 6664158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6665158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6666158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6667158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6668158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6669158ec288SJunchao Zhang 6670158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6671158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6672158ec288SJunchao Zhang 6673158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6674158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6675158ec288SJunchao Zhang 6676158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6677158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6678158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6679158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66809566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66819566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6682e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66839566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6684394ed5ebSJunchao Zhang 6685158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6686158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6687158ec288SJunchao Zhang 6688394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6689394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6690394ed5ebSJunchao Zhang PetscInt *Aj_new; 66919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66939566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6694394ed5ebSJunchao Zhang Aj = Aj_new; 6695394ed5ebSJunchao Zhang } 6696394ed5ebSJunchao Zhang 6697394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6698394ed5ebSJunchao Zhang PetscInt *Bj_new; 66999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 67009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 67019566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6702394ed5ebSJunchao Zhang Bj = Bj_new; 6703394ed5ebSJunchao Zhang } 6704394ed5ebSJunchao Zhang 6705cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6706394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6707cbc6b225SStefano Zampini MatType rtype; 6708394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6709cf8ba265SJunchao Zhang PetscObjectState state; 67109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 67119566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6712394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67139371c9d4SSatish Balay if (cstart) { 67149371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67159371c9d4SSatish Balay } 6716c508b908SBarry Smith 67179566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6718c508b908SBarry Smith 6719c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6720c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67219566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67220da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6723c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6724c508b908SBarry Smith 6725c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6726c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67279566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67280da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6729c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6730c508b908SBarry Smith 67319566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67325bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6733cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6734462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6735cbc6b225SStefano Zampini 6736394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6737394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67389f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67399f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67409f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67419f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 674217b874c6SStefano Zampini a->maxnz = a->nz; 674317b874c6SStefano Zampini b->maxnz = b->nz; 6744394ed5ebSJunchao Zhang 6745cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67469566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67479566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67499566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6750cbc6b225SStefano Zampini 67512c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67522c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67532c4ab24aSJunchao Zhang coo->n = coo_n; 67542c4ab24aSJunchao Zhang coo->sf = sf2; 67552c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67562c4ab24aSJunchao Zhang coo->recvlen = nroots; 67572c4ab24aSJunchao Zhang coo->Annz = Annz; 67582c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67592c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67602c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67612c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67622c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67632c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67642c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67652c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67662c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67672c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67682c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67692c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67702c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67712c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67722c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67732c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67742c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67752c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67762c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67772c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67782c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67792c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 678049abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67812c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67822c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6784394ed5ebSJunchao Zhang } 6785394ed5ebSJunchao Zhang 6786d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6787d71ae5a4SJacob Faibussowitsch { 6788394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6789394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6790394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67912c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67922c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67932c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67942c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67952c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67962c4ab24aSJunchao Zhang PetscContainer container; 67972c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6798394ed5ebSJunchao Zhang 6799394ed5ebSJunchao Zhang PetscFunctionBegin; 68002c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 68012c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 68022c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 68032c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 68042c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 68052c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 68062c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 68072c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 68082c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 68092c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 68102c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 68112c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 68122c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68132c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68142c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68152c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68162c4ab24aSJunchao Zhang 68179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6819394ed5ebSJunchao Zhang 6820394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68212c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6822394ed5ebSJunchao Zhang 6823394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68242c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6825394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68262c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6827da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6828158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6829158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6830394ed5ebSJunchao Zhang } 68312c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6832158ec288SJunchao Zhang PetscScalar sum = 0.0; 6833158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6834158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6835394ed5ebSJunchao Zhang } 68362c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6837394ed5ebSJunchao Zhang 6838394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68392c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6840394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6841394ed5ebSJunchao Zhang } 68422c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6843394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6844394ed5ebSJunchao Zhang } 68459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6848394ed5ebSJunchao Zhang } 6849394ed5ebSJunchao Zhang 6850ccd8e176SBarry Smith /*MC 6851ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6852ccd8e176SBarry Smith 6853ccd8e176SBarry Smith Options Database Keys: 685411a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6855ccd8e176SBarry Smith 6856ccd8e176SBarry Smith Level: beginner 68570cd7f59aSBarry Smith 68580cd7f59aSBarry Smith Notes: 68592ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68600cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68610cd7f59aSBarry Smith in the matrix 68620cd7f59aSBarry Smith 686311a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 686411a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6865ccd8e176SBarry Smith 68661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6867ccd8e176SBarry Smith M*/ 6868d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6869d71ae5a4SJacob Faibussowitsch { 6870ccd8e176SBarry Smith Mat_MPIAIJ *b; 6871ccd8e176SBarry Smith PetscMPIInt size; 6872ccd8e176SBarry Smith 6873ccd8e176SBarry Smith PetscFunctionBegin; 68749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68752205254eSKarl Rupp 68764dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6877ccd8e176SBarry Smith B->data = (void *)b; 6878aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6879ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6880ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6881ccd8e176SBarry Smith b->size = size; 68822205254eSKarl Rupp 68839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6884ccd8e176SBarry Smith 6885ccd8e176SBarry Smith /* build cache for off array entries formed */ 68869566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68872205254eSKarl Rupp 6888ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6889f4259b30SLisandro Dalcin b->colmap = NULL; 6890f4259b30SLisandro Dalcin b->garray = NULL; 6891ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6892ccd8e176SBarry Smith 6893ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68940298fd71SBarry Smith b->lvec = NULL; 68950298fd71SBarry Smith b->Mvctx = NULL; 6896ccd8e176SBarry Smith 6897ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6898f4259b30SLisandro Dalcin b->rowindices = NULL; 6899f4259b30SLisandro Dalcin b->rowvalues = NULL; 6900ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6901ccd8e176SBarry Smith 6902f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 69030298fd71SBarry Smith b->spptr = NULL; 6904f60c3dc2SHong Zhang 69059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 69109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6911674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69163d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69183d0639e7SStefano Zampini #endif 6919d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6920d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6921d5e393b6SSuyash Tandon #endif 69223d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69243d0639e7SStefano Zampini #endif 69259779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6927191b95cbSRichard Tran Mills #endif 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69325d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69345d7652ecSHong Zhang #endif 6935d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6937d24d4204SJose E. Roman #endif 69389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69403dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69433dad0653Sstefano_zampini #endif 69449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69489566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6950ccd8e176SBarry Smith } 695181824310SBarry Smith 69525d83a8b1SBarry Smith /*@ 695311a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 695403bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 695503bfb495SBarry Smith 6956d083f849SBarry Smith Collective 695703bfb495SBarry Smith 695803bfb495SBarry Smith Input Parameters: 695903bfb495SBarry Smith + comm - MPI communicator 696011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 696103bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6962d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69632ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69642ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69652ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6966483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 696704ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 696803bfb495SBarry Smith . a - matrix values 6969483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69702ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 697103bfb495SBarry Smith - oa - matrix values 697203bfb495SBarry Smith 697303bfb495SBarry Smith Output Parameter: 697403bfb495SBarry Smith . mat - the matrix 697503bfb495SBarry Smith 697603bfb495SBarry Smith Level: advanced 697703bfb495SBarry Smith 697803bfb495SBarry Smith Notes: 6979f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6980292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 698103bfb495SBarry Smith 69822ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 698303bfb495SBarry Smith 69842ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 698503bfb495SBarry Smith 69867b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69877b55108eSBarry Smith 6988dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6989dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6990dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6991dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 699211a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6993dca341c0SJed Brown communication if it is known that only local entries will be set. 699403bfb495SBarry Smith 69951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6996db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69972b26979fSBarry Smith @*/ 6998d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6999d71ae5a4SJacob Faibussowitsch { 700003bfb495SBarry Smith Mat_MPIAIJ *maij; 700103bfb495SBarry Smith 700203bfb495SBarry Smith PetscFunctionBegin; 700308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 7004aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 7005aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 70069566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 70079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 70089566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 700903bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 70102205254eSKarl Rupp 70118d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 701203bfb495SBarry Smith 70139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70149566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 701503bfb495SBarry Smith 70169566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70179566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 701803bfb495SBarry Smith 70199566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70229566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70239566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702503bfb495SBarry Smith } 702603bfb495SBarry Smith 70274e84afc0SStefano Zampini typedef struct { 70284e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70294e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70304e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70314e84afc0SStefano Zampini 70324e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70334e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70344e84afc0SStefano Zampini PetscScalar *bufa; 70354e84afc0SStefano Zampini Mat P_oth; 70364e84afc0SStefano Zampini 70374e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7038ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70394e84afc0SStefano Zampini 7040ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70414e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70424e84afc0SStefano Zampini of the temporary storage */ 70434e84afc0SStefano Zampini PetscBool reusesym; 70444e84afc0SStefano Zampini 70454e84afc0SStefano Zampini /* support for COO values insertion */ 7046ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7047ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7048ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7049ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7050c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7051c215019aSStefano Zampini PetscMemType mtype; 70524e84afc0SStefano Zampini 70534e84afc0SStefano Zampini /* customization */ 70544e84afc0SStefano Zampini PetscBool abmerge; 7055abb89eb1SStefano Zampini PetscBool P_oth_bind; 70564e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70574e84afc0SStefano Zampini 7058ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7059d71ae5a4SJacob Faibussowitsch { 70604e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70614e84afc0SStefano Zampini PetscInt i; 70624e84afc0SStefano Zampini 70634e84afc0SStefano Zampini PetscFunctionBegin; 70649566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70659566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70669566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70679566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70689566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 707148a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70729566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70739566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70749566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70759566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70769566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70779566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70794e84afc0SStefano Zampini } 70804e84afc0SStefano Zampini 7081fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7082fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7083fff043a9SJunchao Zhang */ 7084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7085d71ae5a4SJacob Faibussowitsch { 7086c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7087c215019aSStefano Zampini 7088c215019aSStefano Zampini PetscFunctionBegin; 70899566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7090c215019aSStefano Zampini if (f) { 70919566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7092c215019aSStefano Zampini } else { 7093c215019aSStefano Zampini const PetscScalar *vv; 7094c215019aSStefano Zampini 70959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7096c215019aSStefano Zampini if (n && idx) { 7097c215019aSStefano Zampini PetscScalar *w = v; 7098c215019aSStefano Zampini const PetscInt *oi = idx; 7099c215019aSStefano Zampini PetscInt j; 7100c215019aSStefano Zampini 7101c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7102c215019aSStefano Zampini } else { 71039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7104c215019aSStefano Zampini } 71059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7106c215019aSStefano Zampini } 71073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7108c215019aSStefano Zampini } 7109c215019aSStefano Zampini 7110d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7111d71ae5a4SJacob Faibussowitsch { 71124e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71134e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71144e84afc0SStefano Zampini 71154e84afc0SStefano Zampini PetscFunctionBegin; 71164e84afc0SStefano Zampini MatCheckProduct(C, 1); 711728b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71184e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71194e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 712048a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 712148a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71224e84afc0SStefano Zampini } 71234e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7124abb89eb1SStefano Zampini 7125abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 712608401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71279566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7128abb89eb1SStefano Zampini } 71294e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71306497c311SBarry Smith PetscInt noff; 71314e84afc0SStefano Zampini 71326497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71334e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71344e84afc0SStefano Zampini if (noff) { 71356497c311SBarry Smith PetscInt nown; 7136c215019aSStefano Zampini 71376497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71404e84afc0SStefano Zampini n_o += noff; 71414e84afc0SStefano Zampini n_d += nown; 71424e84afc0SStefano Zampini } else { 7143c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7144c215019aSStefano Zampini 71459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71464e84afc0SStefano Zampini n_d += mm->nz; 71474e84afc0SStefano Zampini } 71484e84afc0SStefano Zampini } 7149c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71509566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71519566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71524e84afc0SStefano Zampini } 71539566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71554e84afc0SStefano Zampini } 71564e84afc0SStefano Zampini 71574e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71584e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7159d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7160d71ae5a4SJacob Faibussowitsch { 71614e84afc0SStefano Zampini Mat_Product *product = C->product; 7162ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71634e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71644e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71654e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71664e84afc0SStefano Zampini IS glob = NULL; 71674e84afc0SStefano Zampini const char *prefix; 71684e84afc0SStefano Zampini char pprefix[256]; 71694e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 717082a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 717182a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7172ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7173ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7174ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7175ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7176ddea5d60SJunchao Zhang 71774e84afc0SStefano Zampini MatProductType ptype; 7178d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71794e84afc0SStefano Zampini PetscMPIInt size; 71804e84afc0SStefano Zampini 71814e84afc0SStefano Zampini PetscFunctionBegin; 71824e84afc0SStefano Zampini MatCheckProduct(C, 1); 718328b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71844e84afc0SStefano Zampini ptype = product->type; 7185b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7186fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7187fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7188fa046f9fSJunchao Zhang } 71894e84afc0SStefano Zampini switch (ptype) { 71904e84afc0SStefano Zampini case MATPRODUCT_AB: 71914e84afc0SStefano Zampini A = product->A; 71924e84afc0SStefano Zampini P = product->B; 71934e84afc0SStefano Zampini m = A->rmap->n; 71944e84afc0SStefano Zampini n = P->cmap->n; 71954e84afc0SStefano Zampini M = A->rmap->N; 71964e84afc0SStefano Zampini N = P->cmap->N; 7197ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71984e84afc0SStefano Zampini break; 71994e84afc0SStefano Zampini case MATPRODUCT_AtB: 72004e84afc0SStefano Zampini P = product->A; 72014e84afc0SStefano Zampini A = product->B; 72024e84afc0SStefano Zampini m = P->cmap->n; 72034e84afc0SStefano Zampini n = A->cmap->n; 72044e84afc0SStefano Zampini M = P->cmap->N; 72054e84afc0SStefano Zampini N = A->cmap->N; 72064e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72074e84afc0SStefano Zampini break; 72084e84afc0SStefano Zampini case MATPRODUCT_PtAP: 72094e84afc0SStefano Zampini A = product->A; 72104e84afc0SStefano Zampini P = product->B; 72114e84afc0SStefano Zampini m = P->cmap->n; 72124e84afc0SStefano Zampini n = P->cmap->n; 72134e84afc0SStefano Zampini M = P->cmap->N; 72144e84afc0SStefano Zampini N = P->cmap->N; 72154e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72164e84afc0SStefano Zampini break; 7217d71ae5a4SJacob Faibussowitsch default: 7218d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72194e84afc0SStefano Zampini } 72209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72214e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72224e84afc0SStefano Zampini 72234e84afc0SStefano Zampini /* defaults */ 72244e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72254e84afc0SStefano Zampini mp[i] = NULL; 72264e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72274e84afc0SStefano Zampini rmapt[i] = -1; 72284e84afc0SStefano Zampini cmapt[i] = -1; 72294e84afc0SStefano Zampini rmapa[i] = NULL; 72304e84afc0SStefano Zampini cmapa[i] = NULL; 72314e84afc0SStefano Zampini } 72324e84afc0SStefano Zampini 72334e84afc0SStefano Zampini /* customization */ 72349566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72354e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72364e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72374e84afc0SStefano Zampini if (product->api_user) { 7238d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72409566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7241d0609cedSBarry Smith PetscOptionsEnd(); 72424e84afc0SStefano Zampini } else { 7243d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72449566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72459566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7246d0609cedSBarry Smith PetscOptionsEnd(); 7247abb89eb1SStefano Zampini } 7248abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7249abb89eb1SStefano Zampini if (product->api_user) { 7250d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7252d0609cedSBarry Smith PetscOptionsEnd(); 7253abb89eb1SStefano Zampini } else { 7254d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72559566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7256d0609cedSBarry Smith PetscOptionsEnd(); 72574e84afc0SStefano Zampini } 72584e84afc0SStefano Zampini } 72594e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72604e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72649566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72659566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7266ddea5d60SJunchao Zhang 7267ddea5d60SJunchao Zhang cp = 0; 72684e84afc0SStefano Zampini switch (ptype) { 72694e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72709566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72714e84afc0SStefano Zampini 7272ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7273ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72744e84afc0SStefano Zampini /* P is product->B */ 72759566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72769566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72779566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72789566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72799566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72809566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72819566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72824e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72839566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72849566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72864e84afc0SStefano Zampini rmapt[cp] = 1; 72874e84afc0SStefano Zampini cmapt[cp] = 2; 72884e84afc0SStefano Zampini cmapa[cp] = globidx; 72894e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72904e84afc0SStefano Zampini cp++; 7291ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72929566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72949566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72959566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72969566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72979566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72984e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72999566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73009566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73014e84afc0SStefano Zampini rmapt[cp] = 1; 73024e84afc0SStefano Zampini cmapt[cp] = 1; 73034e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73044e84afc0SStefano Zampini cp++; 73059566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 73069566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73079566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73089566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73099566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73109566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73114e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73129566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73139566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73144e84afc0SStefano Zampini rmapt[cp] = 1; 73154e84afc0SStefano Zampini cmapt[cp] = 2; 73164e84afc0SStefano Zampini cmapa[cp] = p->garray; 73174e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73184e84afc0SStefano Zampini cp++; 73194e84afc0SStefano Zampini } 7320ddea5d60SJunchao Zhang 7321ddea5d60SJunchao Zhang /* A_off * P_other */ 73224e84afc0SStefano Zampini if (mmdata->P_oth) { 73239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7325f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73269566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73279566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73289566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73309566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73319566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73329566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73334e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73349566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73359566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73364e84afc0SStefano Zampini rmapt[cp] = 1; 73374e84afc0SStefano Zampini cmapt[cp] = 2; 73384e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73394e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73404e84afc0SStefano Zampini cp++; 73414e84afc0SStefano Zampini } 73424e84afc0SStefano Zampini break; 7343ddea5d60SJunchao Zhang 73444e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73454e84afc0SStefano Zampini /* A is product->B */ 73469566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7347ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73489566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73499566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73509566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73519566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73529566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73539566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73544e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73559566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73569566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73579566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73584e84afc0SStefano Zampini rmapt[cp] = 2; 73594e84afc0SStefano Zampini rmapa[cp] = globidx; 73604e84afc0SStefano Zampini cmapt[cp] = 2; 73614e84afc0SStefano Zampini cmapa[cp] = globidx; 73624e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73634e84afc0SStefano Zampini cp++; 73644e84afc0SStefano Zampini } else { 73659566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73669566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73679566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73689566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73699566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73709566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73714e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73729566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73739566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73754e84afc0SStefano Zampini rmapt[cp] = 1; 73764e84afc0SStefano Zampini cmapt[cp] = 2; 73774e84afc0SStefano Zampini cmapa[cp] = globidx; 73784e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73794e84afc0SStefano Zampini cp++; 73809566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73819566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73829566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73839566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73849566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73859566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73864e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73879566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73889566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73894e84afc0SStefano Zampini rmapt[cp] = 2; 73904e84afc0SStefano Zampini rmapa[cp] = p->garray; 73914e84afc0SStefano Zampini cmapt[cp] = 2; 73924e84afc0SStefano Zampini cmapa[cp] = globidx; 73934e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73944e84afc0SStefano Zampini cp++; 73954e84afc0SStefano Zampini } 73964e84afc0SStefano Zampini break; 73974e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73989566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73994e84afc0SStefano Zampini /* P is product->B */ 74009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 74019566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 74029566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 74039566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74049566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74059566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74069566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74074e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74089566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74099566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 74114e84afc0SStefano Zampini rmapt[cp] = 2; 74124e84afc0SStefano Zampini rmapa[cp] = globidx; 74134e84afc0SStefano Zampini cmapt[cp] = 2; 74144e84afc0SStefano Zampini cmapa[cp] = globidx; 74154e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74164e84afc0SStefano Zampini cp++; 74174e84afc0SStefano Zampini if (mmdata->P_oth) { 74189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74199566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7420f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74219566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74229566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74239566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74249566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74259566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74269566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74279566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74284e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74299566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74309566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74314e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74324e84afc0SStefano Zampini cp++; 74339566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74349566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74359566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74369566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74379566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74389566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74394e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74409566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74419566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74424e84afc0SStefano Zampini rmapt[cp] = 2; 74434e84afc0SStefano Zampini rmapa[cp] = globidx; 74444e84afc0SStefano Zampini cmapt[cp] = 2; 74454e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74464e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74474e84afc0SStefano Zampini cp++; 74484e84afc0SStefano Zampini } 74494e84afc0SStefano Zampini break; 7450d71ae5a4SJacob Faibussowitsch default: 7451d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74524e84afc0SStefano Zampini } 74534e84afc0SStefano Zampini /* sanity check */ 74549371c9d4SSatish Balay if (size > 1) 74559371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74564e84afc0SStefano Zampini 74579566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7458ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7459ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7460ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7461ddea5d60SJunchao Zhang } 74624e84afc0SStefano Zampini mmdata->cp = cp; 74634e84afc0SStefano Zampini C->product->data = mmdata; 74644e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74654e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74664e84afc0SStefano Zampini 7467c215019aSStefano Zampini /* memory type */ 7468c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7470d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7472c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7473d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74743214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7475c215019aSStefano Zampini 74764e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7477ddea5d60SJunchao Zhang 7478ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7479ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7480ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7481ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7482ddea5d60SJunchao Zhang */ 74834e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74844e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74854e84afc0SStefano Zampini if (mptmp[cp]) continue; 7486ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74874e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74884e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74894e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74904e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74914e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74924e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74934e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74944e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7495ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7496ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74974e84afc0SStefano Zampini } 74984e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74994e84afc0SStefano Zampini } 7500ddea5d60SJunchao Zhang 7501ddea5d60SJunchao Zhang /* 7502ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7503ddea5d60SJunchao Zhang 7504ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7505ddea5d60SJunchao Zhang 7506d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7507ddea5d60SJunchao Zhang 7508ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7509ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7510ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7511ddea5d60SJunchao Zhang 7512ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7513da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7514ddea5d60SJunchao Zhang */ 75159566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75169566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7517ddea5d60SJunchao Zhang 7518ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7519ddea5d60SJunchao Zhang if (hasoffproc) { 75204e84afc0SStefano Zampini PetscSF msf; 75214e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75224e84afc0SStefano Zampini 75239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75259566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7526ddea5d60SJunchao Zhang 75274e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75284e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75294e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75304e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7531ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75324e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75334e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75344e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75354e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75364e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75374e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75384e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75394e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75404e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75414e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75424e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75434e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75444e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7545ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75464e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75474e84afc0SStefano Zampini *coi++ = gr; 75484e84afc0SStefano Zampini *idxoff++ = j; 75494e84afc0SStefano Zampini } 75504e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75514e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75524e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75534e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75544e84afc0SStefano Zampini } else { /* offdiag */ 75554e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75564e84afc0SStefano Zampini } 75574e84afc0SStefano Zampini ncoo_o += nz; 7558ddea5d60SJunchao Zhang } else { /* this is a local row */ 75594e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75604e84afc0SStefano Zampini } 75614e84afc0SStefano Zampini } 75624e84afc0SStefano Zampini } 75634e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75644e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75654e84afc0SStefano Zampini } 75664e84afc0SStefano Zampini 75679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75686497c311SBarry Smith PetscInt incoo_o; 75696497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75706497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75719566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75729566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75734e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75759566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75769566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75779566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75789566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75799566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7580ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75819566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75824e84afc0SStefano Zampini coo_i = coo_i2; 75834e84afc0SStefano Zampini coo_j = coo_j2; 75844e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75854e84afc0SStefano Zampini ncoo = ncoo_d; 75869566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7587c215019aSStefano Zampini 75889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75899566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75909566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75914e84afc0SStefano Zampini } 7592c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75934e84afc0SStefano Zampini 7594ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75954e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75964e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75974e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75984e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75994e84afc0SStefano Zampini const PetscInt *jj = mm->j; 76004e84afc0SStefano Zampini const PetscInt *ii = mm->i; 76014e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 76024e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 76034e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 76044e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 76054e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 76064e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 76074e84afc0SStefano Zampini 76084e84afc0SStefano Zampini if (mptmp[cp]) continue; 7609ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7610ddea5d60SJunchao Zhang /* fill coo_i */ 76114e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76124e84afc0SStefano Zampini const PetscInt gr = i + rs; 76134e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76144e84afc0SStefano Zampini } 7615ddea5d60SJunchao Zhang /* fill coo_j */ 7616ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76179566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7618ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7619ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7620ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76214e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76224e84afc0SStefano Zampini } 76234e84afc0SStefano Zampini ncoo_d += mm->nz; 7624ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76254e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76264e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76274e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76284e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7629ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76304e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7631ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76324e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76334e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76344e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7635ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76364e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76374e84afc0SStefano Zampini } 76384e84afc0SStefano Zampini ncoo_d += nz; 76394e84afc0SStefano Zampini } 76404e84afc0SStefano Zampini } 76414e84afc0SStefano Zampini } 76424e84afc0SStefano Zampini } 764348a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 764548a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76469566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7647ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76489566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76494e84afc0SStefano Zampini 765039cfb508SMark Adams /* set block sizes */ 765139cfb508SMark Adams A = product->A; 765239cfb508SMark Adams P = product->B; 765339cfb508SMark Adams switch (ptype) { 765439cfb508SMark Adams case MATPRODUCT_PtAP: 765539cfb508SMark Adams if (P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 765639cfb508SMark Adams break; 765739cfb508SMark Adams case MATPRODUCT_RARt: 765839cfb508SMark Adams if (P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 765939cfb508SMark Adams break; 766039cfb508SMark Adams case MATPRODUCT_ABC: 766139cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 766239cfb508SMark Adams break; 766339cfb508SMark Adams case MATPRODUCT_AB: 766439cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 766539cfb508SMark Adams break; 766639cfb508SMark Adams case MATPRODUCT_AtB: 766739cfb508SMark Adams if (A->cmap->bs > 1 || P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 766839cfb508SMark Adams break; 766939cfb508SMark Adams case MATPRODUCT_ABt: 767039cfb508SMark Adams if (A->rmap->bs > 1 || P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 767139cfb508SMark Adams break; 767239cfb508SMark Adams default: 767339cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 767439cfb508SMark Adams } 767539cfb508SMark Adams 76764e84afc0SStefano Zampini /* preallocate with COO data */ 76779566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76789566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76804e84afc0SStefano Zampini } 76814e84afc0SStefano Zampini 7682d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7683d71ae5a4SJacob Faibussowitsch { 76844e84afc0SStefano Zampini Mat_Product *product = mat->product; 76854e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76864e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7687abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76884e84afc0SStefano Zampini #else 76894e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76904e84afc0SStefano Zampini #endif 76914e84afc0SStefano Zampini 76924e84afc0SStefano Zampini PetscFunctionBegin; 76934e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76944e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 769548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 769665e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7697abb89eb1SStefano Zampini switch (product->type) { 7698abb89eb1SStefano Zampini case MATPRODUCT_AB: 7699abb89eb1SStefano Zampini if (product->api_user) { 7700d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 77019566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7702d0609cedSBarry Smith PetscOptionsEnd(); 7703abb89eb1SStefano Zampini } else { 7704d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 77059566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7706d0609cedSBarry Smith PetscOptionsEnd(); 7707abb89eb1SStefano Zampini } 7708abb89eb1SStefano Zampini break; 7709abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7710abb89eb1SStefano Zampini if (product->api_user) { 7711d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 77129566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7713d0609cedSBarry Smith PetscOptionsEnd(); 7714abb89eb1SStefano Zampini } else { 7715d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 77169566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7717d0609cedSBarry Smith PetscOptionsEnd(); 7718abb89eb1SStefano Zampini } 7719abb89eb1SStefano Zampini break; 7720abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7721abb89eb1SStefano Zampini if (product->api_user) { 7722d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 77239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7724d0609cedSBarry Smith PetscOptionsEnd(); 7725abb89eb1SStefano Zampini } else { 7726d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 77279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7728d0609cedSBarry Smith PetscOptionsEnd(); 7729abb89eb1SStefano Zampini } 7730abb89eb1SStefano Zampini break; 7731d71ae5a4SJacob Faibussowitsch default: 7732d71ae5a4SJacob Faibussowitsch break; 7733abb89eb1SStefano Zampini } 7734abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7735abb89eb1SStefano Zampini } 77364e84afc0SStefano Zampini #endif 77374e84afc0SStefano Zampini if (match) { 77384e84afc0SStefano Zampini switch (product->type) { 77394e84afc0SStefano Zampini case MATPRODUCT_AB: 77404e84afc0SStefano Zampini case MATPRODUCT_AtB: 7741d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7742d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7743d71ae5a4SJacob Faibussowitsch break; 7744d71ae5a4SJacob Faibussowitsch default: 7745d71ae5a4SJacob Faibussowitsch break; 77464e84afc0SStefano Zampini } 77474e84afc0SStefano Zampini } 77484e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77499566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775181824310SBarry Smith } 775298921bdaSJacob Faibussowitsch 775398921bdaSJacob Faibussowitsch /* 775472833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 775572833a62Smarkadams4 775672833a62Smarkadams4 n - the number of block indices in cc[] 775772833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 775872833a62Smarkadams4 */ 7759d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7760d71ae5a4SJacob Faibussowitsch { 776172833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 776272833a62Smarkadams4 const PetscInt *idx; 776372833a62Smarkadams4 776472833a62Smarkadams4 PetscFunctionBegin; 776572833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 776672833a62Smarkadams4 if (nidx) { 776772833a62Smarkadams4 cnt = 0; 776872833a62Smarkadams4 cc[cnt] = idx[0] / bs; 776972833a62Smarkadams4 for (j = 1; j < nidx; j++) { 777072833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 777172833a62Smarkadams4 } 777272833a62Smarkadams4 } 777372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 777472833a62Smarkadams4 *n = cnt + 1; 77753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 777672833a62Smarkadams4 } 777772833a62Smarkadams4 777872833a62Smarkadams4 /* 777972833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 778072833a62Smarkadams4 778172833a62Smarkadams4 ncollapsed - the number of block indices 778272833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 778372833a62Smarkadams4 */ 7784d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7785d71ae5a4SJacob Faibussowitsch { 778672833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 778772833a62Smarkadams4 778872833a62Smarkadams4 PetscFunctionBegin; 778972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 779072833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 779172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 779272833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77939371c9d4SSatish Balay cprevtmp = cprev; 77949371c9d4SSatish Balay cprev = merged; 77959371c9d4SSatish Balay merged = cprevtmp; 779672833a62Smarkadams4 } 779772833a62Smarkadams4 *ncollapsed = nprev; 779872833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 780072833a62Smarkadams4 } 780172833a62Smarkadams4 78022d776b49SBarry Smith /* 780372833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 780472833a62Smarkadams4 780572833a62Smarkadams4 Input Parameter: 780672833a62Smarkadams4 . Amat - matrix 780772833a62Smarkadams4 - symmetrize - make the result symmetric 780872833a62Smarkadams4 + scale - scale with diagonal 780972833a62Smarkadams4 781072833a62Smarkadams4 Output Parameter: 781172833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 781272833a62Smarkadams4 781372833a62Smarkadams4 */ 7814e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7815d71ae5a4SJacob Faibussowitsch { 781672833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 781772833a62Smarkadams4 MPI_Comm comm; 781872833a62Smarkadams4 Mat Gmat; 781972833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 782072833a62Smarkadams4 Mat a, b, c; 782172833a62Smarkadams4 MatType jtype; 782272833a62Smarkadams4 782372833a62Smarkadams4 PetscFunctionBegin; 782472833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 782572833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 782672833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 782772833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 782872833a62Smarkadams4 nloc = (Iend - Istart) / bs; 782972833a62Smarkadams4 783072833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 783172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 783272833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 783372833a62Smarkadams4 783472833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 783572833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 783672833a62Smarkadams4 implementation */ 783772833a62Smarkadams4 if (bs > 1) { 783872833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 783972833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 784072833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 784172833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 784272833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 784372833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 784472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78452cf69117Smarkadams4 MatScalar *aa, val, *AA; 78462cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78476497c311SBarry Smith 78489371c9d4SSatish Balay if (isseqaij) { 78499371c9d4SSatish Balay a = Amat; 78509371c9d4SSatish Balay b = NULL; 78519371c9d4SSatish Balay } else { 785272833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78539371c9d4SSatish Balay a = d->A; 78549371c9d4SSatish Balay b = d->B; 785572833a62Smarkadams4 } 785672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 785732603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 785872833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78592cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 786059ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78616497c311SBarry Smith 786259ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 786359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 786459ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 786559ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 786672833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 786759ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 786859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 786959ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 787059ee9f9fSPierre Jolivet else { 787159ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 787259ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 787359ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 787472833a62Smarkadams4 } 787559ee9f9fSPierre Jolivet } 787659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 787759ee9f9fSPierre Jolivet } 787859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 787972833a62Smarkadams4 if (!ok) { 788072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 788159ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 788272833a62Smarkadams4 goto old_bs; 788372833a62Smarkadams4 } 788472833a62Smarkadams4 } 788572833a62Smarkadams4 } 788672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 788772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 788872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78892cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 789072833a62Smarkadams4 // diag 789172833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 789272833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78936497c311SBarry Smith 789472833a62Smarkadams4 ai = aseq->i; 789572833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 789672833a62Smarkadams4 aj = aseq->j + ai[brow]; 78976497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 789872833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 789972833a62Smarkadams4 val = 0; 7900e02fb3cdSMark Adams if (index_size == 0) { 79016497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 790272833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 79036497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 790472833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 790572833a62Smarkadams4 } 790672833a62Smarkadams4 } 7907e02fb3cdSMark Adams } else { // use (index,index) value if provided 79086497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79096497c311SBarry Smith PetscInt ii = index[iii]; 7910e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 79116497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 79126497c311SBarry Smith PetscInt jj = index[jjj]; 7913cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7914e02fb3cdSMark Adams } 7915e02fb3cdSMark Adams } 7916e02fb3cdSMark Adams } 7917835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 791872833a62Smarkadams4 AA[k / bs] = val; 791972833a62Smarkadams4 } 792072833a62Smarkadams4 grow = Istart / bs + brow / bs; 792166521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 792272833a62Smarkadams4 } 792372833a62Smarkadams4 // off-diag 792472833a62Smarkadams4 if (ismpiaij) { 792572833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 792672833a62Smarkadams4 const PetscScalar *vals; 792772833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 79286497c311SBarry Smith 792972833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 793072833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 793172833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 79326497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 793359ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 793472833a62Smarkadams4 AA[k / bs] = 0; 793572833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 793672833a62Smarkadams4 } 793772833a62Smarkadams4 nc = ncols / bs; 793872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7939e02fb3cdSMark Adams if (index_size == 0) { 79406497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 794172833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79426497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79436497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7944835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 794572833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 794672833a62Smarkadams4 } 794772833a62Smarkadams4 } 794872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 794972833a62Smarkadams4 } 7950e02fb3cdSMark Adams } else { // use (index,index) value if provided 79516497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79526497c311SBarry Smith PetscInt ii = index[iii]; 7953e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79546497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79556497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79566497c311SBarry Smith PetscInt jj = index[jjj]; 7957e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7958e02fb3cdSMark Adams } 7959e02fb3cdSMark Adams } 7960e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7961e02fb3cdSMark Adams } 7962e02fb3cdSMark Adams } 796372833a62Smarkadams4 grow = Istart / bs + brow / bs; 796466521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 796572833a62Smarkadams4 } 796672833a62Smarkadams4 } 796772833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 796872833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79692cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 797072833a62Smarkadams4 } else { 797172833a62Smarkadams4 const PetscScalar *vals; 797272833a62Smarkadams4 const PetscInt *idx; 797372833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 797472833a62Smarkadams4 old_bs: 797572833a62Smarkadams4 /* 797672833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 797772833a62Smarkadams4 */ 797872833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 797932603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 798072833a62Smarkadams4 if (isseqaij) { 798172833a62Smarkadams4 PetscInt max_d_nnz; 79826497c311SBarry Smith 798372833a62Smarkadams4 /* 798472833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 798572833a62Smarkadams4 */ 798672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 798772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 798872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 798948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 799072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 799172833a62Smarkadams4 } else if (ismpiaij) { 799272833a62Smarkadams4 Mat Daij, Oaij; 799372833a62Smarkadams4 const PetscInt *garray; 799472833a62Smarkadams4 PetscInt max_d_nnz; 79956497c311SBarry Smith 799672833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 799772833a62Smarkadams4 /* 799872833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 799972833a62Smarkadams4 */ 800072833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 800172833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 800272833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 800348a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 800472833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 800572833a62Smarkadams4 /* 800672833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 800772833a62Smarkadams4 */ 800872833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 800972833a62Smarkadams4 o_nnz[jj] = 0; 801072833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 801172833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 801272833a62Smarkadams4 o_nnz[jj] += ncols; 801372833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 801472833a62Smarkadams4 } 801572833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 801672833a62Smarkadams4 } 801772833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 801872833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 801972833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 802072833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 802172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 802272833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 802372833a62Smarkadams4 PetscInt dest_row = Ii / bs; 80246497c311SBarry Smith 802572833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 802672833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 802772833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 802872833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 80296497c311SBarry Smith 803072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 803172833a62Smarkadams4 } 803272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 803372833a62Smarkadams4 } 803472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 803572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 803672833a62Smarkadams4 } 803772833a62Smarkadams4 } else { 80382d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80392d776b49SBarry Smith else { 80402d776b49SBarry Smith Gmat = Amat; 80412d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80422d776b49SBarry Smith } 80439371c9d4SSatish Balay if (isseqaij) { 80449371c9d4SSatish Balay a = Gmat; 80459371c9d4SSatish Balay b = NULL; 80469371c9d4SSatish Balay } else { 804772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80489371c9d4SSatish Balay a = d->A; 80499371c9d4SSatish Balay b = d->B; 805072833a62Smarkadams4 } 80512d776b49SBarry Smith if (filter >= 0 || scale) { 80522d776b49SBarry Smith /* take absolute value of each entry */ 805372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 805472833a62Smarkadams4 MatInfo info; 805572833a62Smarkadams4 PetscScalar *avals; 80566497c311SBarry Smith 805772833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 805872833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 805972833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 806072833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 806172833a62Smarkadams4 } 806272833a62Smarkadams4 } 80632d776b49SBarry Smith } 806472833a62Smarkadams4 if (symmetrize) { 8065b94d7dedSBarry Smith PetscBool isset, issym; 80666497c311SBarry Smith 8067b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8068b94d7dedSBarry Smith if (!isset || !issym) { 806972833a62Smarkadams4 Mat matTrans; 80706497c311SBarry Smith 807172833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80721fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 807372833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 807472833a62Smarkadams4 } 807572833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80762d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 807772833a62Smarkadams4 if (scale) { 807872833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 807972833a62Smarkadams4 Vec diag; 80806497c311SBarry Smith 808172833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 808272833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 808372833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 808472833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 808572833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 808672833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 808772833a62Smarkadams4 } 808872833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80892d776b49SBarry Smith if (filter >= 0) { 80902ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80912ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80922d776b49SBarry Smith } 809372833a62Smarkadams4 *a_Gmat = Gmat; 80943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809572833a62Smarkadams4 } 809672833a62Smarkadams4 809772833a62Smarkadams4 /* 809898921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 809998921bdaSJacob Faibussowitsch */ 810098921bdaSJacob Faibussowitsch 810198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 81029566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 81039566063dSJacob Faibussowitsch #undef PetscCall 81049371c9d4SSatish Balay #define PetscCall(...) \ 81059371c9d4SSatish Balay do { \ 81065f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 810798921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 810898921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 810998921bdaSJacob Faibussowitsch return; \ 811098921bdaSJacob Faibussowitsch } \ 811198921bdaSJacob Faibussowitsch } while (0) 811298921bdaSJacob Faibussowitsch 811398921bdaSJacob Faibussowitsch #undef SETERRQ 81149371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 81159371c9d4SSatish Balay do { \ 811698921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 811798921bdaSJacob Faibussowitsch return; \ 811898921bdaSJacob Faibussowitsch } while (0) 811998921bdaSJacob Faibussowitsch 812098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 812198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 812298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 812398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 812498921bdaSJacob Faibussowitsch #else 812598921bdaSJacob Faibussowitsch #endif 8126d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8127d71ae5a4SJacob Faibussowitsch { 812898921bdaSJacob Faibussowitsch Mat mat = *mmat; 812998921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 813098921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 813198921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 813298921bdaSJacob Faibussowitsch PetscScalar value; 813398921bdaSJacob Faibussowitsch 813498921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 813598921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81365f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 813798921bdaSJacob Faibussowitsch { 813898921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 813998921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 814098921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 814198921bdaSJacob Faibussowitsch 814298921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 814398921bdaSJacob Faibussowitsch Mat A = aij->A; 814498921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 814598921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 814698921bdaSJacob Faibussowitsch MatScalar *aa; 8147f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 814898921bdaSJacob Faibussowitsch Mat B = aij->B; 814998921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 815098921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 815198921bdaSJacob Faibussowitsch MatScalar *ba; 815298921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 815398921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 815498921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 815598921bdaSJacob Faibussowitsch 815698921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 815798921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 815898921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 815998921bdaSJacob Faibussowitsch 816098921bdaSJacob Faibussowitsch PetscFunctionBegin; 81619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 816398921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 816498921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81656bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 816698921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 816798921bdaSJacob Faibussowitsch row = im[i] - rstart; 816898921bdaSJacob Faibussowitsch lastcol1 = -1; 816998921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 817098921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 817198921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 817298921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 817398921bdaSJacob Faibussowitsch low1 = 0; 817498921bdaSJacob Faibussowitsch high1 = nrow1; 817598921bdaSJacob Faibussowitsch lastcol2 = -1; 817698921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 817798921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 817898921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 817998921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 818098921bdaSJacob Faibussowitsch low2 = 0; 818198921bdaSJacob Faibussowitsch high2 = nrow2; 818298921bdaSJacob Faibussowitsch 818398921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 818498921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 818598921bdaSJacob Faibussowitsch else value = v[i + j * m]; 818698921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 818798921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 818898921bdaSJacob Faibussowitsch col = in[j] - cstart; 818998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 819098921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 819198921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 819263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 819398921bdaSJacob Faibussowitsch } else { 819498921bdaSJacob Faibussowitsch if (mat->was_assembled) { 819548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 819698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8197eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 819898921bdaSJacob Faibussowitsch col--; 819998921bdaSJacob Faibussowitsch #else 820098921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 820198921bdaSJacob Faibussowitsch #endif 8202f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8203eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 820498921bdaSJacob Faibussowitsch col = in[j]; 820598921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 820698921bdaSJacob Faibussowitsch B = aij->B; 820798921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 82089371c9d4SSatish Balay bimax = b->imax; 82099371c9d4SSatish Balay bi = b->i; 82109371c9d4SSatish Balay bilen = b->ilen; 82119371c9d4SSatish Balay bj = b->j; 821298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 821398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 821498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 821598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 821698921bdaSJacob Faibussowitsch low2 = 0; 821798921bdaSJacob Faibussowitsch high2 = nrow2; 821898921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 821998921bdaSJacob Faibussowitsch ba = b->a; 822098921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 822198921bdaSJacob Faibussowitsch } 822298921bdaSJacob Faibussowitsch } else col = in[j]; 822398921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 822498921bdaSJacob Faibussowitsch } 822598921bdaSJacob Faibussowitsch } 822698921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 822798921bdaSJacob Faibussowitsch if (roworiented) { 82289566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 822998921bdaSJacob Faibussowitsch } else { 82309566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 823198921bdaSJacob Faibussowitsch } 823298921bdaSJacob Faibussowitsch } 823398921bdaSJacob Faibussowitsch } 82349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 823698921bdaSJacob Faibussowitsch } 823798921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 823898921bdaSJacob Faibussowitsch } 823972833a62Smarkadams4 824098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 824198921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 824298921bdaSJacob Faibussowitsch * original definitions */ 82439566063dSJacob Faibussowitsch #undef PetscCall 824498921bdaSJacob Faibussowitsch #undef SETERRQ 8245