xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 8a8e0b3aa6734b05cd88677becbdcc98d7dc465d)
18a729477SBarry Smith 
270f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h"
3d9942c19SSatish Balay #include "src/inline/spops.h"
48a729477SBarry Smith 
50f5bd95cSBarry Smith /*
60f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
79e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
80f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
90f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
100f5bd95cSBarry Smith has an order N integer array but is fast to acess.
119e25ed09SBarry Smith */
124a2ae208SSatish Balay #undef __FUNCT__
134a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIAIJ_Private"
14dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIAIJ_Private(Mat mat)
159e25ed09SBarry Smith {
1644a69424SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
176849ba73SBarry Smith   PetscErrorCode ierr;
18b1d57f15SBarry Smith   PetscInt       n = aij->B->n,i;
19dbb450caSBarry Smith 
203a40ed3dSBarry Smith   PetscFunctionBegin;
21aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
22273d9f13SBarry Smith   ierr = PetscTableCreate(n,&aij->colmap);CHKERRQ(ierr);
23b1fc9764SSatish Balay   for (i=0; i<n; i++){
240f5bd95cSBarry Smith     ierr = PetscTableAdd(aij->colmap,aij->garray[i]+1,i+1);CHKERRQ(ierr);
25b1fc9764SSatish Balay   }
26b1fc9764SSatish Balay #else
27b1d57f15SBarry Smith   ierr = PetscMalloc((mat->N+1)*sizeof(PetscInt),&aij->colmap);CHKERRQ(ierr);
28b1d57f15SBarry Smith   PetscLogObjectMemory(mat,mat->N*sizeof(PetscInt));
29b1d57f15SBarry Smith   ierr = PetscMemzero(aij->colmap,mat->N*sizeof(PetscInt));CHKERRQ(ierr);
30905e6a2fSBarry Smith   for (i=0; i<n; i++) aij->colmap[aij->garray[i]] = i+1;
31b1fc9764SSatish Balay #endif
323a40ed3dSBarry Smith   PetscFunctionReturn(0);
339e25ed09SBarry Smith }
349e25ed09SBarry Smith 
350520107fSSatish Balay #define CHUNKSIZE   15
3630770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \
370520107fSSatish Balay { \
380520107fSSatish Balay  \
390520107fSSatish Balay     rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
4030770e4dSSatish Balay     rmax = aimax[row]; nrow = ailen[row];  \
41f5e9677aSSatish Balay     col1 = col - shift; \
42f5e9677aSSatish Balay      \
43ba4e3ef2SSatish Balay     low = 0; high = nrow; \
44ba4e3ef2SSatish Balay     while (high-low > 5) { \
45ba4e3ef2SSatish Balay       t = (low+high)/2; \
46ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
47ba4e3ef2SSatish Balay       else             low  = t; \
48ba4e3ef2SSatish Balay     } \
492335bdd2SSatish Balay       for (_i=low; _i<high; _i++) { \
50f5e9677aSSatish Balay         if (rp[_i] > col1) break; \
51f5e9677aSSatish Balay         if (rp[_i] == col1) { \
520520107fSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
530520107fSSatish Balay           else                  ap[_i] = value; \
5430770e4dSSatish Balay           goto a_noinsert; \
550520107fSSatish Balay         } \
560520107fSSatish Balay       }  \
5789280ab3SLois Curfman McInnes       if (nonew == 1) goto a_noinsert; \
5877431f27SBarry Smith       else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
590520107fSSatish Balay       if (nrow >= rmax) { \
600520107fSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
61b1d57f15SBarry Smith         PetscInt    new_nz = ai[am] + CHUNKSIZE,len,*new_i,*new_j; \
6287828ca2SBarry Smith         PetscScalar *new_a; \
630520107fSSatish Balay  \
6477431f27SBarry Smith         if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
6589280ab3SLois Curfman McInnes  \
660520107fSSatish Balay         /* malloc new storage space */ \
67b1d57f15SBarry Smith         len     = new_nz*(sizeof(PetscInt)+sizeof(PetscScalar))+(am+1)*sizeof(PetscInt); \
68b0a32e0cSBarry Smith         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
69b1d57f15SBarry Smith         new_j   = (PetscInt*)(new_a + new_nz); \
700520107fSSatish Balay         new_i   = new_j + new_nz; \
710520107fSSatish Balay  \
720520107fSSatish Balay         /* copy over old data into new slots */ \
730520107fSSatish Balay         for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];} \
74273d9f13SBarry Smith         for (ii=row+1; ii<am+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
75b1d57f15SBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(PetscInt));CHKERRQ(ierr); \
760520107fSSatish Balay         len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \
77549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \
78b1d57f15SBarry Smith                                                            len*sizeof(PetscInt));CHKERRQ(ierr); \
7987828ca2SBarry Smith         ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \
80549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \
8187828ca2SBarry Smith                                                            len*sizeof(PetscScalar));CHKERRQ(ierr);  \
820520107fSSatish Balay         /* free up old matrix storage */ \
83f5e9677aSSatish Balay  \
84606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
85606d414cSSatish Balay         if (!a->singlemalloc) { \
86606d414cSSatish Balay            ierr = PetscFree(a->i);CHKERRQ(ierr); \
87606d414cSSatish Balay            ierr = PetscFree(a->j);CHKERRQ(ierr); \
88606d414cSSatish Balay         } \
890520107fSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
907c922b88SBarry Smith         a->singlemalloc = PETSC_TRUE; \
910520107fSSatish Balay  \
920520107fSSatish Balay         rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
9330770e4dSSatish Balay         rmax = aimax[row] = aimax[row] + CHUNKSIZE; \
94b1d57f15SBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + sizeof(PetscScalar))); \
950520107fSSatish Balay         a->maxnz += CHUNKSIZE; \
960520107fSSatish Balay         a->reallocs++; \
970520107fSSatish Balay       } \
980520107fSSatish Balay       N = nrow++ - 1; a->nz++; \
990520107fSSatish Balay       /* shift up all the later entries in this row */ \
1000520107fSSatish Balay       for (ii=N; ii>=_i; ii--) { \
1010520107fSSatish Balay         rp[ii+1] = rp[ii]; \
1020520107fSSatish Balay         ap[ii+1] = ap[ii]; \
1030520107fSSatish Balay       } \
104f5e9677aSSatish Balay       rp[_i] = col1;  \
1050520107fSSatish Balay       ap[_i] = value;  \
10630770e4dSSatish Balay       a_noinsert: ; \
1070520107fSSatish Balay       ailen[row] = nrow; \
1080520107fSSatish Balay }
1090a198c4cSBarry Smith 
11030770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \
11130770e4dSSatish Balay { \
11230770e4dSSatish Balay  \
11330770e4dSSatish Balay     rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
11430770e4dSSatish Balay     rmax = bimax[row]; nrow = bilen[row];  \
11530770e4dSSatish Balay     col1 = col - shift; \
11630770e4dSSatish Balay      \
117ba4e3ef2SSatish Balay     low = 0; high = nrow; \
118ba4e3ef2SSatish Balay     while (high-low > 5) { \
119ba4e3ef2SSatish Balay       t = (low+high)/2; \
120ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
121ba4e3ef2SSatish Balay       else             low  = t; \
122ba4e3ef2SSatish Balay     } \
1232335bdd2SSatish Balay        for (_i=low; _i<high; _i++) { \
12430770e4dSSatish Balay         if (rp[_i] > col1) break; \
12530770e4dSSatish Balay         if (rp[_i] == col1) { \
12630770e4dSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
12730770e4dSSatish Balay           else                  ap[_i] = value; \
12830770e4dSSatish Balay           goto b_noinsert; \
12930770e4dSSatish Balay         } \
13030770e4dSSatish Balay       }  \
13189280ab3SLois Curfman McInnes       if (nonew == 1) goto b_noinsert; \
13277431f27SBarry Smith       else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
13330770e4dSSatish Balay       if (nrow >= rmax) { \
13430770e4dSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
135b1d57f15SBarry Smith         PetscInt    new_nz = bi[bm] + CHUNKSIZE,len,*new_i,*new_j; \
13687828ca2SBarry Smith         PetscScalar *new_a; \
13730770e4dSSatish Balay  \
13877431f27SBarry Smith         if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
13989280ab3SLois Curfman McInnes  \
14030770e4dSSatish Balay         /* malloc new storage space */ \
141b1d57f15SBarry Smith         len     = new_nz*(sizeof(PetscInt)+sizeof(PetscScalar))+(bm+1)*sizeof(PetscInt); \
142b0a32e0cSBarry Smith         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
143b1d57f15SBarry Smith         new_j   = (PetscInt*)(new_a + new_nz); \
14430770e4dSSatish Balay         new_i   = new_j + new_nz; \
14530770e4dSSatish Balay  \
14630770e4dSSatish Balay         /* copy over old data into new slots */ \
14730770e4dSSatish Balay         for (ii=0; ii<row+1; ii++) {new_i[ii] = bi[ii];} \
148273d9f13SBarry Smith         for (ii=row+1; ii<bm+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
149b1d57f15SBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(PetscInt));CHKERRQ(ierr); \
15030770e4dSSatish Balay         len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \
151549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \
152b1d57f15SBarry Smith                                                            len*sizeof(PetscInt));CHKERRQ(ierr); \
15387828ca2SBarry Smith         ierr = PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \
154549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \
15587828ca2SBarry Smith                                                            len*sizeof(PetscScalar));CHKERRQ(ierr);  \
15630770e4dSSatish Balay         /* free up old matrix storage */ \
15730770e4dSSatish Balay  \
158606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
159606d414cSSatish Balay         if (!b->singlemalloc) { \
160606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
161606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
162606d414cSSatish Balay         } \
16374c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
1647c922b88SBarry Smith         b->singlemalloc = PETSC_TRUE; \
16530770e4dSSatish Balay  \
16630770e4dSSatish Balay         rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
16730770e4dSSatish Balay         rmax = bimax[row] = bimax[row] + CHUNKSIZE; \
168b1d57f15SBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + sizeof(PetscScalar))); \
16974c639caSSatish Balay         b->maxnz += CHUNKSIZE; \
17074c639caSSatish Balay         b->reallocs++; \
17130770e4dSSatish Balay       } \
17274c639caSSatish Balay       N = nrow++ - 1; b->nz++; \
17330770e4dSSatish Balay       /* shift up all the later entries in this row */ \
17430770e4dSSatish Balay       for (ii=N; ii>=_i; ii--) { \
17530770e4dSSatish Balay         rp[ii+1] = rp[ii]; \
17630770e4dSSatish Balay         ap[ii+1] = ap[ii]; \
17730770e4dSSatish Balay       } \
17830770e4dSSatish Balay       rp[_i] = col1;  \
17930770e4dSSatish Balay       ap[_i] = value;  \
18030770e4dSSatish Balay       b_noinsert: ; \
18130770e4dSSatish Balay       bilen[row] = nrow; \
18230770e4dSSatish Balay }
18330770e4dSSatish Balay 
1844a2ae208SSatish Balay #undef __FUNCT__
1854a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIAIJ"
186b1d57f15SBarry Smith PetscErrorCode MatSetValues_MPIAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
1878a729477SBarry Smith {
18844a69424SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
18987828ca2SBarry Smith   PetscScalar    value;
190dfbe8321SBarry Smith   PetscErrorCode ierr;
19157809a77SBarry Smith   PetscInt       i,j,rstart = aij->rstart,rend = aij->rend;
19257809a77SBarry Smith   PetscInt       cstart = aij->cstart,cend = aij->cend,row,col;
193273d9f13SBarry Smith   PetscTruth     roworiented = aij->roworiented;
1948a729477SBarry Smith 
1950520107fSSatish Balay   /* Some Variables required in the macro */
1964ee7247eSSatish Balay   Mat            A = aij->A;
1974ee7247eSSatish Balay   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
19857809a77SBarry Smith   PetscInt       *aimax = a->imax,*ai = a->i,*ailen = a->ilen,*aj = a->j;
19987828ca2SBarry Smith   PetscScalar    *aa = a->a;
200329f5518SBarry Smith   PetscTruth     ignorezeroentries = (((a->ignorezeroentries)&&(addv==ADD_VALUES))?PETSC_TRUE:PETSC_FALSE);
20130770e4dSSatish Balay   Mat            B = aij->B;
20230770e4dSSatish Balay   Mat_SeqAIJ     *b = (Mat_SeqAIJ*)B->data;
20357809a77SBarry Smith   PetscInt       *bimax = b->imax,*bi = b->i,*bilen = b->ilen,*bj = b->j,bm = aij->B->m,am = aij->A->m;
20487828ca2SBarry Smith   PetscScalar    *ba = b->a;
20530770e4dSSatish Balay 
20657809a77SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,col1,low,high,t;
20757809a77SBarry Smith   PetscInt       nonew = a->nonew,shift=0;
20887828ca2SBarry Smith   PetscScalar    *ap;
2094ee7247eSSatish Balay 
2103a40ed3dSBarry Smith   PetscFunctionBegin;
2118a729477SBarry Smith   for (i=0; i<m; i++) {
2125ef9f2a5SBarry Smith     if (im[i] < 0) continue;
213aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
21477431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
2150a198c4cSBarry Smith #endif
2164b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
2174b0e389bSBarry Smith       row = im[i] - rstart;
2181eb62cbbSBarry Smith       for (j=0; j<n; j++) {
2194b0e389bSBarry Smith         if (in[j] >= cstart && in[j] < cend){
2204b0e389bSBarry Smith           col = in[j] - cstart;
2214b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
2225b8514ebSBarry Smith           if (ignorezeroentries && value == 0.0) continue;
22330770e4dSSatish Balay           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
2240520107fSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
225273d9f13SBarry Smith         } else if (in[j] < 0) continue;
226aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
22777431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
2280a198c4cSBarry Smith #endif
2291eb62cbbSBarry Smith         else {
230227d817aSBarry Smith           if (mat->was_assembled) {
231905e6a2fSBarry Smith             if (!aij->colmap) {
232905e6a2fSBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
233905e6a2fSBarry Smith             }
234aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2350f5bd95cSBarry Smith             ierr = PetscTableFind(aij->colmap,in[j]+1,&col);CHKERRQ(ierr);
236fa46199cSSatish Balay 	    col--;
237b1fc9764SSatish Balay #else
238905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
239b1fc9764SSatish Balay #endif
240ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2412493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
2424b0e389bSBarry Smith               col =  in[j];
2439bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
244f9508a3cSSatish Balay               B = aij->B;
245f9508a3cSSatish Balay               b = (Mat_SeqAIJ*)B->data;
246f9508a3cSSatish Balay               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
247f9508a3cSSatish Balay               ba = b->a;
248d6dfbf8fSBarry Smith             }
249c48de900SBarry Smith           } else col = in[j];
2504b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
2515b8514ebSBarry Smith           if (ignorezeroentries && value == 0.0) continue;
25230770e4dSSatish Balay           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
25330770e4dSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2541eb62cbbSBarry Smith         }
2551eb62cbbSBarry Smith       }
2565ef9f2a5SBarry Smith     } else {
25790f02eecSBarry Smith       if (!aij->donotstash) {
258d36fbae8SSatish Balay         if (roworiented) {
2595b8514ebSBarry Smith           if (ignorezeroentries && v[i*n] == 0.0) continue;
2608798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
261d36fbae8SSatish Balay         } else {
2625b8514ebSBarry Smith           if (ignorezeroentries && v[i] == 0.0) continue;
2638798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
2644b0e389bSBarry Smith         }
2651eb62cbbSBarry Smith       }
2668a729477SBarry Smith     }
26790f02eecSBarry Smith   }
2683a40ed3dSBarry Smith   PetscFunctionReturn(0);
2698a729477SBarry Smith }
2708a729477SBarry Smith 
2714a2ae208SSatish Balay #undef __FUNCT__
2724a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIAIJ"
273b1d57f15SBarry Smith PetscErrorCode MatGetValues_MPIAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
274b49de8d1SLois Curfman McInnes {
275b49de8d1SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
276dfbe8321SBarry Smith   PetscErrorCode ierr;
277b1d57f15SBarry Smith   PetscInt       i,j,rstart = aij->rstart,rend = aij->rend;
278b1d57f15SBarry Smith   PetscInt       cstart = aij->cstart,cend = aij->cend,row,col;
279b49de8d1SLois Curfman McInnes 
2803a40ed3dSBarry Smith   PetscFunctionBegin;
281b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
28277431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
28377431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
284b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
285b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
286b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
28777431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]);
28877431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
289b49de8d1SLois Curfman McInnes         if (idxn[j] >= cstart && idxn[j] < cend){
290b49de8d1SLois Curfman McInnes           col = idxn[j] - cstart;
291b49de8d1SLois Curfman McInnes           ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
292fa852ad4SSatish Balay         } else {
293905e6a2fSBarry Smith           if (!aij->colmap) {
294905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
295905e6a2fSBarry Smith           }
296aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2970f5bd95cSBarry Smith           ierr = PetscTableFind(aij->colmap,idxn[j]+1,&col);CHKERRQ(ierr);
298fa46199cSSatish Balay           col --;
299b1fc9764SSatish Balay #else
300905e6a2fSBarry Smith           col = aij->colmap[idxn[j]] - 1;
301b1fc9764SSatish Balay #endif
302e60e1c95SSatish Balay           if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
303d9d09a02SSatish Balay           else {
304b49de8d1SLois Curfman McInnes             ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
305b49de8d1SLois Curfman McInnes           }
306b49de8d1SLois Curfman McInnes         }
307b49de8d1SLois Curfman McInnes       }
308a8c6a408SBarry Smith     } else {
30929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
310b49de8d1SLois Curfman McInnes     }
311b49de8d1SLois Curfman McInnes   }
3123a40ed3dSBarry Smith   PetscFunctionReturn(0);
313b49de8d1SLois Curfman McInnes }
314bc5ccf88SSatish Balay 
3154a2ae208SSatish Balay #undef __FUNCT__
3164a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIAIJ"
317dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
318bc5ccf88SSatish Balay {
319bc5ccf88SSatish Balay   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
320dfbe8321SBarry Smith   PetscErrorCode ierr;
321b1d57f15SBarry Smith   PetscInt       nstash,reallocs;
322bc5ccf88SSatish Balay   InsertMode     addv;
323bc5ccf88SSatish Balay 
324bc5ccf88SSatish Balay   PetscFunctionBegin;
325bc5ccf88SSatish Balay   if (aij->donotstash) {
326bc5ccf88SSatish Balay     PetscFunctionReturn(0);
327bc5ccf88SSatish Balay   }
328bc5ccf88SSatish Balay 
329bc5ccf88SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
330bc5ccf88SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
331bc5ccf88SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
33229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
333bc5ccf88SSatish Balay   }
334bc5ccf88SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
335bc5ccf88SSatish Balay 
3368798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,aij->rowners);CHKERRQ(ierr);
3378798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
33877431f27SBarry Smith   PetscLogInfo(aij->A,"MatAssemblyBegin_MPIAIJ:Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);
339bc5ccf88SSatish Balay   PetscFunctionReturn(0);
340bc5ccf88SSatish Balay }
341bc5ccf88SSatish Balay 
342bc5ccf88SSatish Balay 
3434a2ae208SSatish Balay #undef __FUNCT__
3444a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIAIJ"
345dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
346bc5ccf88SSatish Balay {
347bc5ccf88SSatish Balay   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
34824f910e3SHong Zhang   Mat_SeqAIJ     *a=(Mat_SeqAIJ *)aij->A->data,*b= (Mat_SeqAIJ *)aij->B->data;
3496849ba73SBarry Smith   PetscErrorCode ierr;
350b1d57f15SBarry Smith   PetscMPIInt    n;
351b1d57f15SBarry Smith   PetscInt       i,j,rstart,ncols,flg;
352b1d57f15SBarry Smith   PetscInt       *row,*col,other_disassembled;
35387828ca2SBarry Smith   PetscScalar    *val;
354bc5ccf88SSatish Balay   InsertMode     addv = mat->insertmode;
355bc5ccf88SSatish Balay 
356bc5ccf88SSatish Balay   PetscFunctionBegin;
357bc5ccf88SSatish Balay   if (!aij->donotstash) {
358a2d1c673SSatish Balay     while (1) {
3598798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
360a2d1c673SSatish Balay       if (!flg) break;
361a2d1c673SSatish Balay 
362bc5ccf88SSatish Balay       for (i=0; i<n;) {
363bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
364bc5ccf88SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
365bc5ccf88SSatish Balay         if (j < n) ncols = j-i;
366bc5ccf88SSatish Balay         else       ncols = n-i;
367bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
368bc5ccf88SSatish Balay         ierr = MatSetValues_MPIAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
369bc5ccf88SSatish Balay         i = j;
370bc5ccf88SSatish Balay       }
371bc5ccf88SSatish Balay     }
3728798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
373bc5ccf88SSatish Balay   }
374bc5ccf88SSatish Balay 
375bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->A,mode);CHKERRQ(ierr);
376bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->A,mode);CHKERRQ(ierr);
377bc5ccf88SSatish Balay 
378bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
379bc5ccf88SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
380bc5ccf88SSatish Balay   /*
381bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
382bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
383bc5ccf88SSatish Balay   */
384bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ*)aij->B->data)->nonew)  {
385bc5ccf88SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
386bc5ccf88SSatish Balay     if (mat->was_assembled && !other_disassembled) {
387bc5ccf88SSatish Balay       ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
388f8a12787SBarry Smith       /* reaccess the b because aij->B was changed */
389f8a12787SBarry Smith       b    = (Mat_SeqAIJ *)aij->B->data;
390bc5ccf88SSatish Balay     }
391bc5ccf88SSatish Balay   }
392bc5ccf88SSatish Balay 
393bc5ccf88SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
394bc5ccf88SSatish Balay     ierr = MatSetUpMultiply_MPIAIJ(mat);CHKERRQ(ierr);
395bc5ccf88SSatish Balay   }
396bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->B,mode);CHKERRQ(ierr);
397bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->B,mode);CHKERRQ(ierr);
398bc5ccf88SSatish Balay 
399606d414cSSatish Balay   if (aij->rowvalues) {
400606d414cSSatish Balay     ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);
401606d414cSSatish Balay     aij->rowvalues = 0;
402606d414cSSatish Balay   }
403a30b2313SHong Zhang 
404a30b2313SHong Zhang   /* used by MatAXPY() */
405a30b2313SHong Zhang   a->xtoy = 0; b->xtoy = 0;
406a30b2313SHong Zhang   a->XtoY = 0; b->XtoY = 0;
407a30b2313SHong Zhang 
408bc5ccf88SSatish Balay   PetscFunctionReturn(0);
409bc5ccf88SSatish Balay }
410bc5ccf88SSatish Balay 
4114a2ae208SSatish Balay #undef __FUNCT__
4124a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIAIJ"
413dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
4141eb62cbbSBarry Smith {
41544a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ*)A->data;
416dfbe8321SBarry Smith   PetscErrorCode ierr;
4173a40ed3dSBarry Smith 
4183a40ed3dSBarry Smith   PetscFunctionBegin;
41978b31e54SBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
42078b31e54SBarry Smith   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
4213a40ed3dSBarry Smith   PetscFunctionReturn(0);
4221eb62cbbSBarry Smith }
4231eb62cbbSBarry Smith 
4244a2ae208SSatish Balay #undef __FUNCT__
4254a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIAIJ"
426dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPIAIJ(Mat A,IS is,const PetscScalar *diag)
4271eb62cbbSBarry Smith {
42844a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ*)A->data;
4296849ba73SBarry Smith   PetscErrorCode ierr;
430b1d57f15SBarry Smith   PetscMPIInt    size = l->size,imdex,n,rank = l->rank,tag = A->tag;
431b1d57f15SBarry Smith   PetscInt       i,N,*rows,*owners = l->rowners;
432b1d57f15SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
433b1d57f15SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
434b1d57f15SBarry Smith   PetscInt       *rvalues,count,base,slen,*source;
435b1d57f15SBarry Smith   PetscInt       *lens,*lrows,*values,rstart=l->rstart;
436d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
4371eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
4381eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
4391eb62cbbSBarry Smith   IS             istmp;
44035d8aa7fSBarry Smith   PetscTruth     found;
4411eb62cbbSBarry Smith 
4423a40ed3dSBarry Smith   PetscFunctionBegin;
443e03a110bSBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
44478b31e54SBarry Smith   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
4451eb62cbbSBarry Smith 
4461eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
447b1d57f15SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
448b1d57f15SBarry Smith   ierr   = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
449b1d57f15SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
4501eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4511eb62cbbSBarry Smith     idx = rows[i];
45235d8aa7fSBarry Smith     found = PETSC_FALSE;
45317699dbbSLois Curfman McInnes     for (j=0; j<size; j++) {
4541eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
455c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
4561eb62cbbSBarry Smith       }
4571eb62cbbSBarry Smith     }
45829bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
4591eb62cbbSBarry Smith   }
460c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
4611eb62cbbSBarry Smith 
4621eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
463c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
4641eb62cbbSBarry Smith 
4651eb62cbbSBarry Smith   /* post receives:   */
466b1d57f15SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
467b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
4681eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
469b1d57f15SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
4701eb62cbbSBarry Smith   }
4711eb62cbbSBarry Smith 
4721eb62cbbSBarry Smith   /* do sends:
4731eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
4741eb62cbbSBarry Smith          the ith processor
4751eb62cbbSBarry Smith   */
476b1d57f15SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
477b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
478b1d57f15SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
4791eb62cbbSBarry Smith   starts[0] = 0;
480c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4811eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4821eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
4831eb62cbbSBarry Smith   }
4846831982aSBarry Smith   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
4851eb62cbbSBarry Smith 
4861eb62cbbSBarry Smith   starts[0] = 0;
487c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4881eb62cbbSBarry Smith   count = 0;
48917699dbbSLois Curfman McInnes   for (i=0; i<size; i++) {
490c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
491b1d57f15SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4921eb62cbbSBarry Smith     }
4931eb62cbbSBarry Smith   }
494606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
4951eb62cbbSBarry Smith 
49617699dbbSLois Curfman McInnes   base = owners[rank];
4971eb62cbbSBarry Smith 
4981eb62cbbSBarry Smith   /*  wait on receives */
499b1d57f15SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
5001eb62cbbSBarry Smith   source = lens + nrecvs;
5011eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
5021eb62cbbSBarry Smith   while (count) {
503ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
5041eb62cbbSBarry Smith     /* unpack receives into our local space */
505b1d57f15SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
506d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
507d6dfbf8fSBarry Smith     lens[imdex]    = n;
5081eb62cbbSBarry Smith     slen          += n;
5091eb62cbbSBarry Smith     count--;
5101eb62cbbSBarry Smith   }
511606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
5121eb62cbbSBarry Smith 
5131eb62cbbSBarry Smith   /* move the data into the send scatter */
514b1d57f15SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
5151eb62cbbSBarry Smith   count = 0;
5161eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
5171eb62cbbSBarry Smith     values = rvalues + i*nmax;
5181eb62cbbSBarry Smith     for (j=0; j<lens[i]; j++) {
5191eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
5201eb62cbbSBarry Smith     }
5211eb62cbbSBarry Smith   }
522606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
523606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
524606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
525606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
5261eb62cbbSBarry Smith 
5271eb62cbbSBarry Smith   /* actually zap the local rows */
528029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
529b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
5306a5c57faSSatish Balay 
5316eb55b6aSBarry Smith   /*
5326eb55b6aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
5336eb55b6aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
5346eb55b6aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
5356eb55b6aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
5366eb55b6aSBarry Smith 
5376eb55b6aSBarry Smith        Contributed by: Mathew Knepley
5386eb55b6aSBarry Smith   */
539e2d53e46SBarry Smith   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
540e2d53e46SBarry Smith   ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr);
5416eb55b6aSBarry Smith   if (diag && (l->A->M == l->A->N)) {
5426eb55b6aSBarry Smith     ierr      = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr);
543e2d53e46SBarry Smith   } else if (diag) {
544e2d53e46SBarry Smith     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
545fa46199cSSatish Balay     if (((Mat_SeqAIJ*)l->A->data)->nonew) {
54629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options\n\
547fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
5486525c446SSatish Balay     }
549e2d53e46SBarry Smith     for (i = 0; i < slen; i++) {
550e2d53e46SBarry Smith       row  = lrows[i] + rstart;
551e2d53e46SBarry Smith       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
552e2d53e46SBarry Smith     }
553e2d53e46SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
554e2d53e46SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5556eb55b6aSBarry Smith   } else {
5566a5c57faSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
5576eb55b6aSBarry Smith   }
55878b31e54SBarry Smith   ierr = ISDestroy(istmp);CHKERRQ(ierr);
559606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
56072dacd9aSBarry Smith 
5611eb62cbbSBarry Smith   /* wait on sends */
5621eb62cbbSBarry Smith   if (nsends) {
563b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
564ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
565606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
5661eb62cbbSBarry Smith   }
567606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
568606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
5691eb62cbbSBarry Smith 
5703a40ed3dSBarry Smith   PetscFunctionReturn(0);
5711eb62cbbSBarry Smith }
5721eb62cbbSBarry Smith 
5734a2ae208SSatish Balay #undef __FUNCT__
5744a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIAIJ"
575dfbe8321SBarry Smith PetscErrorCode MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
5761eb62cbbSBarry Smith {
577416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
578dfbe8321SBarry Smith   PetscErrorCode ierr;
579b1d57f15SBarry Smith   PetscInt       nt;
580416022c9SBarry Smith 
5813a40ed3dSBarry Smith   PetscFunctionBegin;
582a2ce50c7SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
583273d9f13SBarry Smith   if (nt != A->n) {
58477431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->n,nt);
585fbd6ef76SBarry Smith   }
58643a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
587f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
58843a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
589f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
5903a40ed3dSBarry Smith   PetscFunctionReturn(0);
5911eb62cbbSBarry Smith }
5921eb62cbbSBarry Smith 
5934a2ae208SSatish Balay #undef __FUNCT__
5944a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIAIJ"
595dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
596da3a660dSBarry Smith {
597416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
598dfbe8321SBarry Smith   PetscErrorCode ierr;
5993a40ed3dSBarry Smith 
6003a40ed3dSBarry Smith   PetscFunctionBegin;
60143a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
602f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
60343a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
604f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
6053a40ed3dSBarry Smith   PetscFunctionReturn(0);
606da3a660dSBarry Smith }
607da3a660dSBarry Smith 
6084a2ae208SSatish Balay #undef __FUNCT__
6094a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIAIJ"
610dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIAIJ(Mat A,Vec xx,Vec yy)
611da3a660dSBarry Smith {
612416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
613dfbe8321SBarry Smith   PetscErrorCode ierr;
614da3a660dSBarry Smith 
6153a40ed3dSBarry Smith   PetscFunctionBegin;
616da3a660dSBarry Smith   /* do nondiagonal part */
6177c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
618da3a660dSBarry Smith   /* send it on its way */
619537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
620da3a660dSBarry Smith   /* do local part */
6217c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
622da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
623da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
624da3a660dSBarry Smith   /* but is not perhaps always true. */
625537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6263a40ed3dSBarry Smith   PetscFunctionReturn(0);
627da3a660dSBarry Smith }
628da3a660dSBarry Smith 
629cd0d46ebSvictorle EXTERN_C_BEGIN
630cd0d46ebSvictorle #undef __FUNCT__
6315fbd3699SBarry Smith #define __FUNCT__ "MatIsTranspose_MPIAIJ"
632dfbe8321SBarry Smith PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat,Mat Bmat,PetscTruth tol,PetscTruth *f)
633cd0d46ebSvictorle {
6344f423910Svictorle   MPI_Comm       comm;
635cd0d46ebSvictorle   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *) Amat->data, *Bij;
63666501d38Svictorle   Mat            Adia = Aij->A, Bdia, Aoff,Boff,*Aoffs,*Boffs;
637cd0d46ebSvictorle   IS             Me,Notme;
6386849ba73SBarry Smith   PetscErrorCode ierr;
639b1d57f15SBarry Smith   PetscInt       M,N,first,last,*notme,i;
640b1d57f15SBarry Smith   PetscMPIInt    size;
641cd0d46ebSvictorle 
642cd0d46ebSvictorle   PetscFunctionBegin;
64342e5f5b4Svictorle 
64442e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
64566501d38Svictorle   Bij = (Mat_MPIAIJ *) Bmat->data; Bdia = Bij->A;
6465485867bSBarry Smith   ierr = MatIsTranspose(Adia,Bdia,tol,f);CHKERRQ(ierr);
647cd0d46ebSvictorle   if (!*f) PetscFunctionReturn(0);
6484f423910Svictorle   ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr);
649b1d57f15SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
650b1d57f15SBarry Smith   if (size == 1) PetscFunctionReturn(0);
65142e5f5b4Svictorle 
65242e5f5b4Svictorle   /* Hard test: off-diagonal block. This takes a MatGetSubMatrix. */
653cd0d46ebSvictorle   ierr = MatGetSize(Amat,&M,&N);CHKERRQ(ierr);
654cd0d46ebSvictorle   ierr = MatGetOwnershipRange(Amat,&first,&last);CHKERRQ(ierr);
655b1d57f15SBarry Smith   ierr = PetscMalloc((N-last+first)*sizeof(PetscInt),&notme);CHKERRQ(ierr);
656cd0d46ebSvictorle   for (i=0; i<first; i++) notme[i] = i;
657cd0d46ebSvictorle   for (i=last; i<M; i++) notme[i-last+first] = i;
658268466fbSBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,&Notme);CHKERRQ(ierr);
659268466fbSBarry Smith   ierr = ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me);CHKERRQ(ierr);
660268466fbSBarry Smith   ierr = MatGetSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs);CHKERRQ(ierr);
66166501d38Svictorle   Aoff = Aoffs[0];
662268466fbSBarry Smith   ierr = MatGetSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs);CHKERRQ(ierr);
66366501d38Svictorle   Boff = Boffs[0];
6645485867bSBarry Smith   ierr = MatIsTranspose(Aoff,Boff,tol,f);CHKERRQ(ierr);
66566501d38Svictorle   ierr = MatDestroyMatrices(1,&Aoffs);CHKERRQ(ierr);
66666501d38Svictorle   ierr = MatDestroyMatrices(1,&Boffs);CHKERRQ(ierr);
66742e5f5b4Svictorle   ierr = ISDestroy(Me);CHKERRQ(ierr);
66842e5f5b4Svictorle   ierr = ISDestroy(Notme);CHKERRQ(ierr);
66942e5f5b4Svictorle 
670cd0d46ebSvictorle   PetscFunctionReturn(0);
671cd0d46ebSvictorle }
672cd0d46ebSvictorle EXTERN_C_END
673cd0d46ebSvictorle 
6744a2ae208SSatish Balay #undef __FUNCT__
6754a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIAIJ"
676dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
677da3a660dSBarry Smith {
678416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
679dfbe8321SBarry Smith   PetscErrorCode ierr;
680da3a660dSBarry Smith 
6813a40ed3dSBarry Smith   PetscFunctionBegin;
682da3a660dSBarry Smith   /* do nondiagonal part */
6837c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
684da3a660dSBarry Smith   /* send it on its way */
685537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
686da3a660dSBarry Smith   /* do local part */
6877c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
688da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
689da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
690da3a660dSBarry Smith   /* but is not perhaps always true. */
6910a198c4cSBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6923a40ed3dSBarry Smith   PetscFunctionReturn(0);
693da3a660dSBarry Smith }
694da3a660dSBarry Smith 
6951eb62cbbSBarry Smith /*
6961eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
6971eb62cbbSBarry Smith    diagonal block
6981eb62cbbSBarry Smith */
6994a2ae208SSatish Balay #undef __FUNCT__
7004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIAIJ"
701dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A,Vec v)
7021eb62cbbSBarry Smith {
703dfbe8321SBarry Smith   PetscErrorCode ierr;
704416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
7053a40ed3dSBarry Smith 
7063a40ed3dSBarry Smith   PetscFunctionBegin;
707273d9f13SBarry Smith   if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
7085baf8537SBarry Smith   if (a->rstart != a->cstart || a->rend != a->cend) {
70929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"row partition must equal col partition");
7103a40ed3dSBarry Smith   }
7113a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
7123a40ed3dSBarry Smith   PetscFunctionReturn(0);
7131eb62cbbSBarry Smith }
7141eb62cbbSBarry Smith 
7154a2ae208SSatish Balay #undef __FUNCT__
7164a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIAIJ"
717dfbe8321SBarry Smith PetscErrorCode MatScale_MPIAIJ(const PetscScalar aa[],Mat A)
718052efed2SBarry Smith {
719052efed2SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
720dfbe8321SBarry Smith   PetscErrorCode ierr;
7213a40ed3dSBarry Smith 
7223a40ed3dSBarry Smith   PetscFunctionBegin;
723052efed2SBarry Smith   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
724052efed2SBarry Smith   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
7253a40ed3dSBarry Smith   PetscFunctionReturn(0);
726052efed2SBarry Smith }
727052efed2SBarry Smith 
7284a2ae208SSatish Balay #undef __FUNCT__
7294a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIAIJ"
730dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
7311eb62cbbSBarry Smith {
73244a69424SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
733dfbe8321SBarry Smith   PetscErrorCode ierr;
73483e2fdc7SBarry Smith 
7353a40ed3dSBarry Smith   PetscFunctionBegin;
736aa482453SBarry Smith #if defined(PETSC_USE_LOG)
73777431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->M,mat->N);
738a5a9c739SBarry Smith #endif
7398798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
740606d414cSSatish Balay   ierr = PetscFree(aij->rowners);CHKERRQ(ierr);
74178b31e54SBarry Smith   ierr = MatDestroy(aij->A);CHKERRQ(ierr);
74278b31e54SBarry Smith   ierr = MatDestroy(aij->B);CHKERRQ(ierr);
743aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7440f5bd95cSBarry Smith   if (aij->colmap) {ierr = PetscTableDelete(aij->colmap);CHKERRQ(ierr);}
745b1fc9764SSatish Balay #else
746606d414cSSatish Balay   if (aij->colmap) {ierr = PetscFree(aij->colmap);CHKERRQ(ierr);}
747b1fc9764SSatish Balay #endif
748606d414cSSatish Balay   if (aij->garray) {ierr = PetscFree(aij->garray);CHKERRQ(ierr);}
7497c922b88SBarry Smith   if (aij->lvec)   {ierr = VecDestroy(aij->lvec);CHKERRQ(ierr);}
7507c922b88SBarry Smith   if (aij->Mvctx)  {ierr = VecScatterDestroy(aij->Mvctx);CHKERRQ(ierr);}
751606d414cSSatish Balay   if (aij->rowvalues) {ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);}
752606d414cSSatish Balay   ierr = PetscFree(aij);CHKERRQ(ierr);
753901853e0SKris Buschelman 
754901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
755901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
756901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
757901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C","",PETSC_NULL);CHKERRQ(ierr);
758901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
759ff69c46cSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
760901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
7613a40ed3dSBarry Smith   PetscFunctionReturn(0);
7621eb62cbbSBarry Smith }
763ee50ffe9SBarry Smith 
7644a2ae208SSatish Balay #undef __FUNCT__
7658e2fed03SBarry Smith #define __FUNCT__ "MatView_MPIAIJ_Binary"
766dfbe8321SBarry Smith PetscErrorCode MatView_MPIAIJ_Binary(Mat mat,PetscViewer viewer)
7678e2fed03SBarry Smith {
7688e2fed03SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)mat->data;
7698e2fed03SBarry Smith   Mat_SeqAIJ*       A = (Mat_SeqAIJ*)aij->A->data;
7708e2fed03SBarry Smith   Mat_SeqAIJ*       B = (Mat_SeqAIJ*)aij->B->data;
7716849ba73SBarry Smith   PetscErrorCode    ierr;
77232dcc486SBarry Smith   PetscMPIInt       rank,size,tag = ((PetscObject)viewer)->tag;
7736f69ff64SBarry Smith   int               fd;
7746f69ff64SBarry Smith   PetscInt          nz,header[4],*row_lengths,*range,rlen,i;
7756f69ff64SBarry Smith   PetscInt          nzmax,*column_indices,j,k,col,*garray = aij->garray,cnt,cstart = aij->cstart,rnz;
7768e2fed03SBarry Smith   PetscScalar       *column_values;
7778e2fed03SBarry Smith 
7788e2fed03SBarry Smith   PetscFunctionBegin;
7798e2fed03SBarry Smith   ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
7808e2fed03SBarry Smith   ierr = MPI_Comm_size(mat->comm,&size);CHKERRQ(ierr);
7818e2fed03SBarry Smith   nz   = A->nz + B->nz;
782958c9bccSBarry Smith   if (!rank) {
7838e2fed03SBarry Smith     header[0] = MAT_FILE_COOKIE;
7848e2fed03SBarry Smith     header[1] = mat->M;
7858e2fed03SBarry Smith     header[2] = mat->N;
786b1d57f15SBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,mat->comm);CHKERRQ(ierr);
7878e2fed03SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
7886f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
7898e2fed03SBarry Smith     /* get largest number of rows any processor has */
7908e2fed03SBarry Smith     rlen = mat->m;
7918e2fed03SBarry Smith     ierr = PetscMapGetGlobalRange(mat->rmap,&range);CHKERRQ(ierr);
7928e2fed03SBarry Smith     for (i=1; i<size; i++) {
7938e2fed03SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
7948e2fed03SBarry Smith     }
7958e2fed03SBarry Smith   } else {
796b1d57f15SBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,mat->comm);CHKERRQ(ierr);
7978e2fed03SBarry Smith     rlen = mat->m;
7988e2fed03SBarry Smith   }
7998e2fed03SBarry Smith 
8008e2fed03SBarry Smith   /* load up the local row counts */
801b1d57f15SBarry Smith   ierr = PetscMalloc((rlen+1)*sizeof(PetscInt),&row_lengths);CHKERRQ(ierr);
8028e2fed03SBarry Smith   for (i=0; i<mat->m; i++) {
8038e2fed03SBarry Smith     row_lengths[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
8048e2fed03SBarry Smith   }
8058e2fed03SBarry Smith 
8068e2fed03SBarry Smith   /* store the row lengths to the file */
807958c9bccSBarry Smith   if (!rank) {
8088e2fed03SBarry Smith     MPI_Status status;
8096f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,row_lengths,mat->m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
8108e2fed03SBarry Smith     for (i=1; i<size; i++) {
8118e2fed03SBarry Smith       rlen = range[i+1] - range[i];
812b1d57f15SBarry Smith       ierr = MPI_Recv(row_lengths,rlen,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
8136f69ff64SBarry Smith       ierr = PetscBinaryWrite(fd,row_lengths,rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
8148e2fed03SBarry Smith     }
8158e2fed03SBarry Smith   } else {
816b1d57f15SBarry Smith     ierr = MPI_Send(row_lengths,mat->m,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
8178e2fed03SBarry Smith   }
8188e2fed03SBarry Smith   ierr = PetscFree(row_lengths);CHKERRQ(ierr);
8198e2fed03SBarry Smith 
8208e2fed03SBarry Smith   /* load up the local column indices */
8218e2fed03SBarry Smith   nzmax = nz; /* )th processor needs space a largest processor needs */
822b1d57f15SBarry Smith   ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,mat->comm);CHKERRQ(ierr);
823b1d57f15SBarry Smith   ierr = PetscMalloc((nzmax+1)*sizeof(PetscInt),&column_indices);CHKERRQ(ierr);
8248e2fed03SBarry Smith   cnt  = 0;
8258e2fed03SBarry Smith   for (i=0; i<mat->m; i++) {
8268e2fed03SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
8278e2fed03SBarry Smith       if ( (col = garray[B->j[j]]) > cstart) break;
8288e2fed03SBarry Smith       column_indices[cnt++] = col;
8298e2fed03SBarry Smith     }
8308e2fed03SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
8318e2fed03SBarry Smith       column_indices[cnt++] = A->j[k] + cstart;
8328e2fed03SBarry Smith     }
8338e2fed03SBarry Smith     for (; j<B->i[i+1]; j++) {
8348e2fed03SBarry Smith       column_indices[cnt++] = garray[B->j[j]];
8358e2fed03SBarry Smith     }
8368e2fed03SBarry Smith   }
83777431f27SBarry Smith   if (cnt != A->nz + B->nz) SETERRQ2(PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,A->nz+B->nz);
8388e2fed03SBarry Smith 
8398e2fed03SBarry Smith   /* store the column indices to the file */
840958c9bccSBarry Smith   if (!rank) {
8418e2fed03SBarry Smith     MPI_Status status;
8426f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
8438e2fed03SBarry Smith     for (i=1; i<size; i++) {
844b1d57f15SBarry Smith       ierr = MPI_Recv(&rnz,1,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
84577431f27SBarry Smith       if (rnz > nzmax) SETERRQ2(PETSC_ERR_LIB,"Internal PETSc error: nz = %D nzmax = %D",nz,nzmax);
846b1d57f15SBarry Smith       ierr = MPI_Recv(column_indices,rnz,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
8476f69ff64SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,rnz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
8488e2fed03SBarry Smith     }
8498e2fed03SBarry Smith   } else {
850b1d57f15SBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
851b1d57f15SBarry Smith     ierr = MPI_Send(column_indices,nz,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
8528e2fed03SBarry Smith   }
8538e2fed03SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
8548e2fed03SBarry Smith 
8558e2fed03SBarry Smith   /* load up the local column values */
8568e2fed03SBarry Smith   ierr = PetscMalloc((nzmax+1)*sizeof(PetscScalar),&column_values);CHKERRQ(ierr);
8578e2fed03SBarry Smith   cnt  = 0;
8588e2fed03SBarry Smith   for (i=0; i<mat->m; i++) {
8598e2fed03SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
8608e2fed03SBarry Smith       if ( garray[B->j[j]] > cstart) break;
8618e2fed03SBarry Smith       column_values[cnt++] = B->a[j];
8628e2fed03SBarry Smith     }
8638e2fed03SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
8648e2fed03SBarry Smith       column_values[cnt++] = A->a[k];
8658e2fed03SBarry Smith     }
8668e2fed03SBarry Smith     for (; j<B->i[i+1]; j++) {
8678e2fed03SBarry Smith       column_values[cnt++] = B->a[j];
8688e2fed03SBarry Smith     }
8698e2fed03SBarry Smith   }
87077431f27SBarry Smith   if (cnt != A->nz + B->nz) SETERRQ2(PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,A->nz+B->nz);
8718e2fed03SBarry Smith 
8728e2fed03SBarry Smith   /* store the column values to the file */
873958c9bccSBarry Smith   if (!rank) {
8748e2fed03SBarry Smith     MPI_Status status;
8756f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
8768e2fed03SBarry Smith     for (i=1; i<size; i++) {
877b1d57f15SBarry Smith       ierr = MPI_Recv(&rnz,1,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
87877431f27SBarry Smith       if (rnz > nzmax) SETERRQ2(PETSC_ERR_LIB,"Internal PETSc error: nz = %D nzmax = %D",nz,nzmax);
879b021249fSBarry Smith       ierr = MPI_Recv(column_values,rnz,MPIU_SCALAR,i,tag,mat->comm,&status);CHKERRQ(ierr);
8806f69ff64SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,rnz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
8818e2fed03SBarry Smith     }
8828e2fed03SBarry Smith   } else {
883b1d57f15SBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
8848e2fed03SBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,mat->comm);CHKERRQ(ierr);
8858e2fed03SBarry Smith   }
8868e2fed03SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
8878e2fed03SBarry Smith   PetscFunctionReturn(0);
8888e2fed03SBarry Smith }
8898e2fed03SBarry Smith 
8908e2fed03SBarry Smith #undef __FUNCT__
8914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ_ASCIIorDraworSocket"
892dfbe8321SBarry Smith PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
893416022c9SBarry Smith {
89444a69424SLois Curfman McInnes   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)mat->data;
895dfbe8321SBarry Smith   PetscErrorCode    ierr;
89632dcc486SBarry Smith   PetscMPIInt       rank = aij->rank,size = aij->size;
89732077d6dSBarry Smith   PetscTruth        isdraw,iascii,flg,isbinary;
898b0a32e0cSBarry Smith   PetscViewer       sviewer;
899f3ef73ceSBarry Smith   PetscViewerFormat format;
900416022c9SBarry Smith 
9013a40ed3dSBarry Smith   PetscFunctionBegin;
902fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
90332077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
9048e2fed03SBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
90532077d6dSBarry Smith   if (iascii) {
906b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
907456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9084e220ebcSLois Curfman McInnes       MatInfo info;
9091dab6e02SBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
910888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
911b0a32e0cSBarry Smith       ierr = PetscOptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg);CHKERRQ(ierr);
9126831982aSBarry Smith       if (flg) {
91377431f27SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D mem %D, not using I-node routines\n",
91477431f27SBarry Smith 					      rank,mat->m,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
9156831982aSBarry Smith       } else {
91677431f27SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D mem %D, using I-node routines\n",
91777431f27SBarry Smith 		    rank,mat->m,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
9186831982aSBarry Smith       }
919888f2ed8SSatish Balay       ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
92077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
921888f2ed8SSatish Balay       ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
92277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
923b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
924a40aa06bSLois Curfman McInnes       ierr = VecScatterView(aij->Mvctx,viewer);CHKERRQ(ierr);
9253a40ed3dSBarry Smith       PetscFunctionReturn(0);
926fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9273a40ed3dSBarry Smith       PetscFunctionReturn(0);
9284aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9294aedb280SBarry Smith       PetscFunctionReturn(0);
93008480c60SBarry Smith     }
9318e2fed03SBarry Smith   } else if (isbinary) {
9328e2fed03SBarry Smith     if (size == 1) {
9338e2fed03SBarry Smith       ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr);
9348e2fed03SBarry Smith       ierr = MatView(aij->A,viewer);CHKERRQ(ierr);
9358e2fed03SBarry Smith     } else {
9368e2fed03SBarry Smith       ierr = MatView_MPIAIJ_Binary(mat,viewer);CHKERRQ(ierr);
9378e2fed03SBarry Smith     }
9388e2fed03SBarry Smith     PetscFunctionReturn(0);
9390f5bd95cSBarry Smith   } else if (isdraw) {
940b0a32e0cSBarry Smith     PetscDraw  draw;
94119bcc07fSBarry Smith     PetscTruth isnull;
942b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
943b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
94419bcc07fSBarry Smith   }
94519bcc07fSBarry Smith 
94617699dbbSLois Curfman McInnes   if (size == 1) {
947e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr);
94878b31e54SBarry Smith     ierr = MatView(aij->A,viewer);CHKERRQ(ierr);
9493a40ed3dSBarry Smith   } else {
95095373324SBarry Smith     /* assemble the entire matrix onto first processor. */
95195373324SBarry Smith     Mat         A;
952ec8511deSBarry Smith     Mat_SeqAIJ  *Aloc;
953b1d57f15SBarry Smith     PetscInt    M = mat->M,N = mat->N,m,*ai,*aj,row,*cols,i,*ct;
95487828ca2SBarry Smith     PetscScalar *a;
9552ee70a88SLois Curfman McInnes 
95617699dbbSLois Curfman McInnes     if (!rank) {
957f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
9583a40ed3dSBarry Smith     } else {
959f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
96095373324SBarry Smith     }
961f204ca49SKris Buschelman     /* This is just a temporary matrix, so explicitly using MATMPIAIJ is probably best */
962f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIAIJ);CHKERRQ(ierr);
963f204ca49SKris Buschelman     ierr = MatMPIAIJSetPreallocation(A,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
964b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
965416022c9SBarry Smith 
96695373324SBarry Smith     /* copy over the A part */
967ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->A->data;
968273d9f13SBarry Smith     m = aij->A->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
96995373324SBarry Smith     row = aij->rstart;
970bfec09a0SHong Zhang     for (i=0; i<ai[m]; i++) {aj[i] += aij->cstart ;}
97195373324SBarry Smith     for (i=0; i<m; i++) {
972416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
97395373324SBarry Smith       row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
97495373324SBarry Smith     }
9752ee70a88SLois Curfman McInnes     aj = Aloc->j;
976bfec09a0SHong Zhang     for (i=0; i<ai[m]; i++) {aj[i] -= aij->cstart;}
97795373324SBarry Smith 
97895373324SBarry Smith     /* copy over the B part */
979ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->B->data;
980273d9f13SBarry Smith     m    = aij->B->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
98195373324SBarry Smith     row  = aij->rstart;
982b1d57f15SBarry Smith     ierr = PetscMalloc((ai[m]+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
983b0a32e0cSBarry Smith     ct   = cols;
984bfec09a0SHong Zhang     for (i=0; i<ai[m]; i++) {cols[i] = aij->garray[aj[i]];}
98595373324SBarry Smith     for (i=0; i<m; i++) {
986416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
98795373324SBarry Smith       row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
98895373324SBarry Smith     }
989606d414cSSatish Balay     ierr = PetscFree(ct);CHKERRQ(ierr);
9906d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9916d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
99255843e3eSBarry Smith     /*
99355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
994b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
99555843e3eSBarry Smith     */
996b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
997e03a110bSBarry Smith     if (!rank) {
998e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
9996831982aSBarry Smith       ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
100095373324SBarry Smith     }
1001b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
100278b31e54SBarry Smith     ierr = MatDestroy(A);CHKERRQ(ierr);
100395373324SBarry Smith   }
10043a40ed3dSBarry Smith   PetscFunctionReturn(0);
10051eb62cbbSBarry Smith }
10061eb62cbbSBarry Smith 
10074a2ae208SSatish Balay #undef __FUNCT__
10084a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ"
1009dfbe8321SBarry Smith PetscErrorCode MatView_MPIAIJ(Mat mat,PetscViewer viewer)
1010416022c9SBarry Smith {
1011dfbe8321SBarry Smith   PetscErrorCode ierr;
101232077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
1013416022c9SBarry Smith 
10143a40ed3dSBarry Smith   PetscFunctionBegin;
101532077d6dSBarry Smith   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1016fb9695e5SSatish Balay   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1017fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1018b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
101932077d6dSBarry Smith   if (iascii || isdraw || isbinary || issocket) {
10207b2a1423SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10215cd90555SBarry Smith   } else {
102279a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIAIJ matrices",((PetscObject)viewer)->type_name);
1023416022c9SBarry Smith   }
10243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1025416022c9SBarry Smith }
1026416022c9SBarry Smith 
10271eb62cbbSBarry Smith 
1028c14dc6b6SHong Zhang 
10294a2ae208SSatish Balay #undef __FUNCT__
10304a2ae208SSatish Balay #define __FUNCT__ "MatRelax_MPIAIJ"
1031b1d57f15SBarry Smith PetscErrorCode MatRelax_MPIAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
10328a729477SBarry Smith {
103344a69424SLois Curfman McInnes   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)matin->data;
1034dfbe8321SBarry Smith   PetscErrorCode ierr;
1035c14dc6b6SHong Zhang   Vec            bb1;
1036a6c309e7SHong Zhang   PetscScalar    mone=-1.0;
10378a729477SBarry Smith 
10383a40ed3dSBarry Smith   PetscFunctionBegin;
103977431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1040c14dc6b6SHong Zhang 
1041c14dc6b6SHong Zhang   ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
10422798e883SHong Zhang 
1043c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
1044da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1045bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
10462798e883SHong Zhang       its--;
1047da3a660dSBarry Smith     }
10482798e883SHong Zhang 
10492798e883SHong Zhang     while (its--) {
10503a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10513a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10522798e883SHong Zhang 
1053c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
1054c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
1055c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
10562798e883SHong Zhang 
1057c14dc6b6SHong Zhang       /* local sweep */
1058bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);
1059c14dc6b6SHong Zhang       CHKERRQ(ierr);
10602798e883SHong Zhang     }
10613a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
1062da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1063c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
10642798e883SHong Zhang       its--;
1065da3a660dSBarry Smith     }
10662798e883SHong Zhang     while (its--) {
10673a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10683a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10692798e883SHong Zhang 
1070c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
1071c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
1072c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
1073c14dc6b6SHong Zhang 
1074c14dc6b6SHong Zhang       /* local sweep */
1075a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
1076c14dc6b6SHong Zhang       CHKERRQ(ierr);
10772798e883SHong Zhang     }
10783a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
1079da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1080c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
10812798e883SHong Zhang       its--;
1082da3a660dSBarry Smith     }
10832798e883SHong Zhang     while (its--) {
10842e8a6d31SBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10852e8a6d31SBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10862798e883SHong Zhang 
1087c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
1088c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
1089c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
10902798e883SHong Zhang 
1091c14dc6b6SHong Zhang       /* local sweep */
1092a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
1093c14dc6b6SHong Zhang       CHKERRQ(ierr);
10942798e883SHong Zhang     }
10953a40ed3dSBarry Smith   } else {
109629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Parallel SOR not supported");
1097c16cb8f2SBarry Smith   }
1098c14dc6b6SHong Zhang 
1099c14dc6b6SHong Zhang   ierr = VecDestroy(bb1);CHKERRQ(ierr);
11003a40ed3dSBarry Smith   PetscFunctionReturn(0);
11018a729477SBarry Smith }
1102a66be287SLois Curfman McInnes 
11034a2ae208SSatish Balay #undef __FUNCT__
11044a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIAIJ"
1105dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1106a66be287SLois Curfman McInnes {
1107a66be287SLois Curfman McInnes   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)matin->data;
1108a66be287SLois Curfman McInnes   Mat            A = mat->A,B = mat->B;
1109dfbe8321SBarry Smith   PetscErrorCode ierr;
1110329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
1111a66be287SLois Curfman McInnes 
11123a40ed3dSBarry Smith   PetscFunctionBegin;
11134e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
11144e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
11154e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
11164e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
11174e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
11184e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
11194e220ebcSLois Curfman McInnes   isend[3] += info->memory;  isend[4] += info->mallocs;
1120a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
11214e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
11224e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
11234e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
11244e220ebcSLois Curfman McInnes     info->memory       = isend[3];
11254e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1126a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1127d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
11284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
11294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
11304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
11314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
11324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1133a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1134d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
11354e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
11364e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
11374e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
11384e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
11394e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1140a66be287SLois Curfman McInnes   }
11414e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
11424e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
11434e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
1144273d9f13SBarry Smith   info->rows_global       = (double)matin->M;
1145273d9f13SBarry Smith   info->columns_global    = (double)matin->N;
1146273d9f13SBarry Smith   info->rows_local        = (double)matin->m;
1147273d9f13SBarry Smith   info->columns_local     = (double)matin->N;
11484e220ebcSLois Curfman McInnes 
11493a40ed3dSBarry Smith   PetscFunctionReturn(0);
1150a66be287SLois Curfman McInnes }
1151a66be287SLois Curfman McInnes 
11524a2ae208SSatish Balay #undef __FUNCT__
11534a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIAIJ"
1154dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIAIJ(Mat A,MatOption op)
1155c74985f6SBarry Smith {
1156c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
1157dfbe8321SBarry Smith   PetscErrorCode ierr;
1158c74985f6SBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
116012c028f9SKris Buschelman   switch (op) {
116112c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
116212c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
116312c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
116412c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
116512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
116612c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
116712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
116812c028f9SKris Buschelman   case MAT_USE_INODES:
116912c028f9SKris Buschelman   case MAT_DO_NOT_USE_INODES:
117012c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
11711dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
11721dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
117312c028f9SKris Buschelman     break;
117412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
11757c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
11761dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
11771dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
117812c028f9SKris Buschelman     break;
117912c028f9SKris Buschelman   case MAT_ROWS_SORTED:
118012c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
118112c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1182b0a32e0cSBarry Smith     PetscLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n");
118312c028f9SKris Buschelman     break;
118412c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
11857c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
11861dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
11871dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
118812c028f9SKris Buschelman     break;
118912c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
11907c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
119112c028f9SKris Buschelman     break;
119212c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
119329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
119477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
119577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1196bf108f30SBarry Smith   case MAT_HERMITIAN:
1197bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1198bf108f30SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1199bf108f30SBarry Smith     break;
12009a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12019a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12029a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12039a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
120477e54ba9SKris Buschelman     break;
120512c028f9SKris Buschelman   default:
120629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
12073a40ed3dSBarry Smith   }
12083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1209c74985f6SBarry Smith }
1210c74985f6SBarry Smith 
12114a2ae208SSatish Balay #undef __FUNCT__
12124a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIAIJ"
1213b1d57f15SBarry Smith PetscErrorCode MatGetRow_MPIAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
121439e00950SLois Curfman McInnes {
1215154123eaSLois Curfman McInnes   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)matin->data;
121687828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12176849ba73SBarry Smith   PetscErrorCode ierr;
1218b1d57f15SBarry Smith   PetscInt       i,*cworkA,*cworkB,**pcA,**pcB,cstart = mat->cstart;
1219b1d57f15SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,rstart = mat->rstart,rend = mat->rend;
1220b1d57f15SBarry Smith   PetscInt       *cmap,*idx_p;
122139e00950SLois Curfman McInnes 
12223a40ed3dSBarry Smith   PetscFunctionBegin;
122329bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
12247a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
12257a0afa10SBarry Smith 
122670f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
12277a0afa10SBarry Smith     /*
12287a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
12297a0afa10SBarry Smith     */
12307a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ*)mat->A->data,*Ba = (Mat_SeqAIJ*)mat->B->data;
1231b1d57f15SBarry Smith     PetscInt     max = 1,tmp;
1232273d9f13SBarry Smith     for (i=0; i<matin->m; i++) {
12337a0afa10SBarry Smith       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
12347a0afa10SBarry Smith       if (max < tmp) { max = tmp; }
12357a0afa10SBarry Smith     }
1236b1d57f15SBarry Smith     ierr = PetscMalloc(max*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1237b1d57f15SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max);
12387a0afa10SBarry Smith   }
12397a0afa10SBarry Smith 
124029bbc08cSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Only local rows")
1241abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
124239e00950SLois Curfman McInnes 
1243154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1244154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1245154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1246f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1247f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1248154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1249154123eaSLois Curfman McInnes 
125070f0671dSBarry Smith   cmap  = mat->garray;
1251154123eaSLois Curfman McInnes   if (v  || idx) {
1252154123eaSLois Curfman McInnes     if (nztot) {
1253154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1254b1d57f15SBarry Smith       PetscInt imark = -1;
1255154123eaSLois Curfman McInnes       if (v) {
125670f0671dSBarry Smith         *v = v_p = mat->rowvalues;
125739e00950SLois Curfman McInnes         for (i=0; i<nzB; i++) {
125870f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart)   v_p[i] = vworkB[i];
1259154123eaSLois Curfman McInnes           else break;
1260154123eaSLois Curfman McInnes         }
1261154123eaSLois Curfman McInnes         imark = i;
126270f0671dSBarry Smith         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
126370f0671dSBarry Smith         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1264154123eaSLois Curfman McInnes       }
1265154123eaSLois Curfman McInnes       if (idx) {
126670f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
126770f0671dSBarry Smith         if (imark > -1) {
126870f0671dSBarry Smith           for (i=0; i<imark; i++) {
126970f0671dSBarry Smith             idx_p[i] = cmap[cworkB[i]];
127070f0671dSBarry Smith           }
127170f0671dSBarry Smith         } else {
1272154123eaSLois Curfman McInnes           for (i=0; i<nzB; i++) {
127370f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart)   idx_p[i] = cmap[cworkB[i]];
1274154123eaSLois Curfman McInnes             else break;
1275154123eaSLois Curfman McInnes           }
1276154123eaSLois Curfman McInnes           imark = i;
127770f0671dSBarry Smith         }
127870f0671dSBarry Smith         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart + cworkA[i];
127970f0671dSBarry Smith         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]];
128039e00950SLois Curfman McInnes       }
12813f97c4b0SBarry Smith     } else {
12821ca473b0SSatish Balay       if (idx) *idx = 0;
12831ca473b0SSatish Balay       if (v)   *v   = 0;
12841ca473b0SSatish Balay     }
1285154123eaSLois Curfman McInnes   }
128639e00950SLois Curfman McInnes   *nz = nztot;
1287f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1288f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
12893a40ed3dSBarry Smith   PetscFunctionReturn(0);
129039e00950SLois Curfman McInnes }
129139e00950SLois Curfman McInnes 
12924a2ae208SSatish Balay #undef __FUNCT__
12934a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIAIJ"
1294b1d57f15SBarry Smith PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
129539e00950SLois Curfman McInnes {
12967a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
12973a40ed3dSBarry Smith 
12983a40ed3dSBarry Smith   PetscFunctionBegin;
12997a0afa10SBarry Smith   if (aij->getrowactive == PETSC_FALSE) {
130029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
13017a0afa10SBarry Smith   }
13027a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
13033a40ed3dSBarry Smith   PetscFunctionReturn(0);
130439e00950SLois Curfman McInnes }
130539e00950SLois Curfman McInnes 
13064a2ae208SSatish Balay #undef __FUNCT__
13074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIAIJ"
1308dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIAIJ(Mat mat,NormType type,PetscReal *norm)
1309855ac2c5SLois Curfman McInnes {
1310855ac2c5SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
1311ec8511deSBarry Smith   Mat_SeqAIJ     *amat = (Mat_SeqAIJ*)aij->A->data,*bmat = (Mat_SeqAIJ*)aij->B->data;
1312dfbe8321SBarry Smith   PetscErrorCode ierr;
1313b1d57f15SBarry Smith   PetscInt       i,j,cstart = aij->cstart;
1314329f5518SBarry Smith   PetscReal      sum = 0.0;
131587828ca2SBarry Smith   PetscScalar    *v;
131604ca555eSLois Curfman McInnes 
13173a40ed3dSBarry Smith   PetscFunctionBegin;
131817699dbbSLois Curfman McInnes   if (aij->size == 1) {
131914183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm);CHKERRQ(ierr);
132037fa93a5SLois Curfman McInnes   } else {
132104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
132204ca555eSLois Curfman McInnes       v = amat->a;
132304ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++) {
1324aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1325329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
132604ca555eSLois Curfman McInnes #else
132704ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
132804ca555eSLois Curfman McInnes #endif
132904ca555eSLois Curfman McInnes       }
133004ca555eSLois Curfman McInnes       v = bmat->a;
133104ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++) {
1332aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1333329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
133404ca555eSLois Curfman McInnes #else
133504ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
133604ca555eSLois Curfman McInnes #endif
133704ca555eSLois Curfman McInnes       }
1338d7d1e502SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
133904ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
13403a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1341329f5518SBarry Smith       PetscReal *tmp,*tmp2;
1342b1d57f15SBarry Smith       PetscInt    *jj,*garray = aij->garray;
1343b0a32e0cSBarry Smith       ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
1344b0a32e0cSBarry Smith       ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp2);CHKERRQ(ierr);
1345273d9f13SBarry Smith       ierr = PetscMemzero(tmp,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
134604ca555eSLois Curfman McInnes       *norm = 0.0;
134704ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
134804ca555eSLois Curfman McInnes       for (j=0; j<amat->nz; j++) {
1349bfec09a0SHong Zhang         tmp[cstart + *jj++ ] += PetscAbsScalar(*v);  v++;
135004ca555eSLois Curfman McInnes       }
135104ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
135204ca555eSLois Curfman McInnes       for (j=0; j<bmat->nz; j++) {
1353bfec09a0SHong Zhang         tmp[garray[*jj++]] += PetscAbsScalar(*v); v++;
135404ca555eSLois Curfman McInnes       }
1355d7d1e502SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
1356273d9f13SBarry Smith       for (j=0; j<mat->N; j++) {
135704ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
135804ca555eSLois Curfman McInnes       }
1359606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
1360606d414cSSatish Balay       ierr = PetscFree(tmp2);CHKERRQ(ierr);
13613a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1362329f5518SBarry Smith       PetscReal ntemp = 0.0;
1363273d9f13SBarry Smith       for (j=0; j<aij->A->m; j++) {
1364bfec09a0SHong Zhang         v = amat->a + amat->i[j];
136504ca555eSLois Curfman McInnes         sum = 0.0;
136604ca555eSLois Curfman McInnes         for (i=0; i<amat->i[j+1]-amat->i[j]; i++) {
1367cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
136804ca555eSLois Curfman McInnes         }
1369bfec09a0SHong Zhang         v = bmat->a + bmat->i[j];
137004ca555eSLois Curfman McInnes         for (i=0; i<bmat->i[j+1]-bmat->i[j]; i++) {
1371cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
137204ca555eSLois Curfman McInnes         }
1373515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
137404ca555eSLois Curfman McInnes       }
1375d7d1e502SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
1376ca161407SBarry Smith     } else {
137729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
137804ca555eSLois Curfman McInnes     }
137937fa93a5SLois Curfman McInnes   }
13803a40ed3dSBarry Smith   PetscFunctionReturn(0);
1381855ac2c5SLois Curfman McInnes }
1382855ac2c5SLois Curfman McInnes 
13834a2ae208SSatish Balay #undef __FUNCT__
13844a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIAIJ"
1385dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIAIJ(Mat A,Mat *matout)
1386b7c46309SBarry Smith {
1387b7c46309SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
1388dbb450caSBarry Smith   Mat_SeqAIJ     *Aloc = (Mat_SeqAIJ*)a->A->data;
1389dfbe8321SBarry Smith   PetscErrorCode ierr;
1390b1d57f15SBarry Smith   PetscInt       M = A->M,N = A->N,m,*ai,*aj,row,*cols,i,*ct;
13913a40ed3dSBarry Smith   Mat            B;
139287828ca2SBarry Smith   PetscScalar    *array;
1393b7c46309SBarry Smith 
13943a40ed3dSBarry Smith   PetscFunctionBegin;
13957c922b88SBarry Smith   if (!matout && M != N) {
139629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1397d4bb536fSBarry Smith   }
1398d4bb536fSBarry Smith 
1399f204ca49SKris Buschelman   ierr = MatCreate(A->comm,A->n,A->m,N,M,&B);CHKERRQ(ierr);
1400f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1401f204ca49SKris Buschelman   ierr = MatMPIAIJSetPreallocation(B,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1402b7c46309SBarry Smith 
1403b7c46309SBarry Smith   /* copy over the A part */
1404ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->A->data;
1405273d9f13SBarry Smith   m = a->A->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1406b7c46309SBarry Smith   row = a->rstart;
1407bfec09a0SHong Zhang   for (i=0; i<ai[m]; i++) {aj[i] += a->cstart ;}
1408b7c46309SBarry Smith   for (i=0; i<m; i++) {
1409416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1410b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1411b7c46309SBarry Smith   }
1412b7c46309SBarry Smith   aj = Aloc->j;
1413bfec09a0SHong Zhang   for (i=0; i<ai[m]; i++) {aj[i] -= a->cstart ;}
1414b7c46309SBarry Smith 
1415b7c46309SBarry Smith   /* copy over the B part */
1416ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->B->data;
1417273d9f13SBarry Smith   m = a->B->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1418b7c46309SBarry Smith   row  = a->rstart;
1419b1d57f15SBarry Smith   ierr = PetscMalloc((1+ai[m])*sizeof(PetscInt),&cols);CHKERRQ(ierr);
1420b0a32e0cSBarry Smith   ct   = cols;
1421bfec09a0SHong Zhang   for (i=0; i<ai[m]; i++) {cols[i] = a->garray[aj[i]];}
1422b7c46309SBarry Smith   for (i=0; i<m; i++) {
1423416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1424b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1425b7c46309SBarry Smith   }
1426606d414cSSatish Balay   ierr = PetscFree(ct);CHKERRQ(ierr);
14276d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14286d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14297c922b88SBarry Smith   if (matout) {
14300de55854SLois Curfman McInnes     *matout = B;
14310de55854SLois Curfman McInnes   } else {
1432273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
14330de55854SLois Curfman McInnes   }
14343a40ed3dSBarry Smith   PetscFunctionReturn(0);
1435b7c46309SBarry Smith }
1436b7c46309SBarry Smith 
14374a2ae208SSatish Balay #undef __FUNCT__
14384a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIAIJ"
1439dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr)
1440a008b906SSatish Balay {
14414b967eb1SSatish Balay   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
14424b967eb1SSatish Balay   Mat            a = aij->A,b = aij->B;
1443dfbe8321SBarry Smith   PetscErrorCode ierr;
1444b1d57f15SBarry Smith   PetscInt       s1,s2,s3;
1445a008b906SSatish Balay 
14463a40ed3dSBarry Smith   PetscFunctionBegin;
14474b967eb1SSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
14484b967eb1SSatish Balay   if (rr) {
1449e1311b90SBarry Smith     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
145029bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
14514b967eb1SSatish Balay     /* Overlap communication with computation. */
145243a90d84SBarry Smith     ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1453a008b906SSatish Balay   }
14544b967eb1SSatish Balay   if (ll) {
1455e1311b90SBarry Smith     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
145629bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1457f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr);
14584b967eb1SSatish Balay   }
14594b967eb1SSatish Balay   /* scale  the diagonal block */
1460f830108cSBarry Smith   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
14614b967eb1SSatish Balay 
14624b967eb1SSatish Balay   if (rr) {
14634b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
146443a90d84SBarry Smith     ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1465f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,0,aij->lvec);CHKERRQ(ierr);
14664b967eb1SSatish Balay   }
14674b967eb1SSatish Balay 
14683a40ed3dSBarry Smith   PetscFunctionReturn(0);
1469a008b906SSatish Balay }
1470a008b906SSatish Balay 
1471a008b906SSatish Balay 
14724a2ae208SSatish Balay #undef __FUNCT__
14734a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIAIJ"
1474dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPIAIJ(Mat A)
1475682d7d0cSBarry Smith {
1476682d7d0cSBarry Smith   Mat_MPIAIJ     *a   = (Mat_MPIAIJ*)A->data;
1477dfbe8321SBarry Smith   PetscErrorCode ierr;
1478682d7d0cSBarry Smith 
14793a40ed3dSBarry Smith   PetscFunctionBegin;
14803a40ed3dSBarry Smith   if (!a->rank) {
14813a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr);
14823a40ed3dSBarry Smith   }
14833a40ed3dSBarry Smith   PetscFunctionReturn(0);
1484682d7d0cSBarry Smith }
1485682d7d0cSBarry Smith 
14864a2ae208SSatish Balay #undef __FUNCT__
1487521d7252SBarry Smith #define __FUNCT__ "MatSetBlockSize_MPIAIJ"
1488521d7252SBarry Smith PetscErrorCode MatSetBlockSize_MPIAIJ(Mat A,PetscInt bs)
14895a838052SSatish Balay {
1490521d7252SBarry Smith   Mat_MPIAIJ     *a   = (Mat_MPIAIJ*)A->data;
1491521d7252SBarry Smith   PetscErrorCode ierr;
1492521d7252SBarry Smith 
14933a40ed3dSBarry Smith   PetscFunctionBegin;
1494521d7252SBarry Smith   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
1495521d7252SBarry Smith   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14963a40ed3dSBarry Smith   PetscFunctionReturn(0);
14975a838052SSatish Balay }
14984a2ae208SSatish Balay #undef __FUNCT__
14994a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIAIJ"
1500dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
1501bb5a7306SBarry Smith {
1502bb5a7306SBarry Smith   Mat_MPIAIJ     *a   = (Mat_MPIAIJ*)A->data;
1503dfbe8321SBarry Smith   PetscErrorCode ierr;
15043a40ed3dSBarry Smith 
15053a40ed3dSBarry Smith   PetscFunctionBegin;
1506bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
15073a40ed3dSBarry Smith   PetscFunctionReturn(0);
1508bb5a7306SBarry Smith }
1509bb5a7306SBarry Smith 
15104a2ae208SSatish Balay #undef __FUNCT__
15114a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIAIJ"
1512dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIAIJ(Mat A,Mat B,PetscTruth *flag)
1513d4bb536fSBarry Smith {
1514d4bb536fSBarry Smith   Mat_MPIAIJ     *matB = (Mat_MPIAIJ*)B->data,*matA = (Mat_MPIAIJ*)A->data;
1515d4bb536fSBarry Smith   Mat            a,b,c,d;
1516d4bb536fSBarry Smith   PetscTruth     flg;
1517dfbe8321SBarry Smith   PetscErrorCode ierr;
1518d4bb536fSBarry Smith 
15193a40ed3dSBarry Smith   PetscFunctionBegin;
1520d4bb536fSBarry Smith   a = matA->A; b = matA->B;
1521d4bb536fSBarry Smith   c = matB->A; d = matB->B;
1522d4bb536fSBarry Smith 
1523d4bb536fSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1524d4bb536fSBarry Smith   if (flg == PETSC_TRUE) {
1525d4bb536fSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1526d4bb536fSBarry Smith   }
1527ca161407SBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
15283a40ed3dSBarry Smith   PetscFunctionReturn(0);
1529d4bb536fSBarry Smith }
1530d4bb536fSBarry Smith 
15314a2ae208SSatish Balay #undef __FUNCT__
15324a2ae208SSatish Balay #define __FUNCT__ "MatCopy_MPIAIJ"
1533dfbe8321SBarry Smith PetscErrorCode MatCopy_MPIAIJ(Mat A,Mat B,MatStructure str)
1534cb5b572fSBarry Smith {
1535dfbe8321SBarry Smith   PetscErrorCode ierr;
1536cb5b572fSBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
1537cb5b572fSBarry Smith   Mat_MPIAIJ     *b = (Mat_MPIAIJ *)B->data;
1538cb5b572fSBarry Smith 
1539cb5b572fSBarry Smith   PetscFunctionBegin;
154033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
154133f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1542cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
1543cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
1544cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
1545cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
1546cb5b572fSBarry Smith        then copying the submatrices */
1547cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1548cb5b572fSBarry Smith   } else {
1549cb5b572fSBarry Smith     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
1550cb5b572fSBarry Smith     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
1551cb5b572fSBarry Smith   }
1552cb5b572fSBarry Smith   PetscFunctionReturn(0);
1553cb5b572fSBarry Smith }
1554cb5b572fSBarry Smith 
15554a2ae208SSatish Balay #undef __FUNCT__
15564a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIAIJ"
1557dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIAIJ(Mat A)
1558273d9f13SBarry Smith {
1559dfbe8321SBarry Smith   PetscErrorCode ierr;
1560273d9f13SBarry Smith 
1561273d9f13SBarry Smith   PetscFunctionBegin;
1562273d9f13SBarry Smith   ierr =  MatMPIAIJSetPreallocation(A,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1563273d9f13SBarry Smith   PetscFunctionReturn(0);
1564273d9f13SBarry Smith }
1565273d9f13SBarry Smith 
1566ac90fabeSBarry Smith #include "petscblaslapack.h"
1567ac90fabeSBarry Smith #undef __FUNCT__
1568ac90fabeSBarry Smith #define __FUNCT__ "MatAXPY_MPIAIJ"
1569dfbe8321SBarry Smith PetscErrorCode MatAXPY_MPIAIJ(const PetscScalar a[],Mat X,Mat Y,MatStructure str)
1570ac90fabeSBarry Smith {
1571dfbe8321SBarry Smith   PetscErrorCode ierr;
1572b1d57f15SBarry Smith   PetscInt       i;
1573ac90fabeSBarry Smith   Mat_MPIAIJ     *xx = (Mat_MPIAIJ *)X->data,*yy = (Mat_MPIAIJ *)Y->data;
15744ce68768SBarry Smith   PetscBLASInt   bnz,one=1;
1575ac90fabeSBarry Smith   Mat_SeqAIJ     *x,*y;
1576ac90fabeSBarry Smith 
1577ac90fabeSBarry Smith   PetscFunctionBegin;
1578ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
1579ac90fabeSBarry Smith     x = (Mat_SeqAIJ *)xx->A->data;
1580ac90fabeSBarry Smith     y = (Mat_SeqAIJ *)yy->A->data;
15814ce68768SBarry Smith     bnz = (PetscBLASInt)x->nz;
15824ce68768SBarry Smith     BLaxpy_(&bnz,(PetscScalar*)a,x->a,&one,y->a,&one);
1583ac90fabeSBarry Smith     x = (Mat_SeqAIJ *)xx->B->data;
1584ac90fabeSBarry Smith     y = (Mat_SeqAIJ *)yy->B->data;
15854ce68768SBarry Smith     bnz = (PetscBLASInt)x->nz;
15864ce68768SBarry Smith     BLaxpy_(&bnz,(PetscScalar*)a,x->a,&one,y->a,&one);
1587a30b2313SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) {
1588c537a176SHong Zhang     ierr = MatAXPY_SeqAIJ(a,xx->A,yy->A,str);CHKERRQ(ierr);
1589c537a176SHong Zhang 
1590c537a176SHong Zhang     x = (Mat_SeqAIJ *)xx->B->data;
1591a30b2313SHong Zhang     y = (Mat_SeqAIJ *)yy->B->data;
1592a30b2313SHong Zhang     if (y->xtoy && y->XtoY != xx->B) {
1593a30b2313SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
1594a30b2313SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
1595c537a176SHong Zhang     }
1596a30b2313SHong Zhang     if (!y->xtoy) { /* get xtoy */
159724f910e3SHong Zhang       ierr = MatAXPYGetxtoy_Private(xx->B->m,x->i,x->j,xx->garray,y->i,y->j,yy->garray,&y->xtoy);CHKERRQ(ierr);
1598a30b2313SHong Zhang       y->XtoY = xx->B;
1599c537a176SHong Zhang     }
1600a30b2313SHong Zhang     for (i=0; i<x->nz; i++) y->a[y->xtoy[i]] += (*a)*(x->a[i]);
1601ac90fabeSBarry Smith   } else {
1602ac90fabeSBarry Smith     ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr);
1603ac90fabeSBarry Smith   }
1604ac90fabeSBarry Smith   PetscFunctionReturn(0);
1605ac90fabeSBarry Smith }
1606ac90fabeSBarry Smith 
16078a729477SBarry Smith /* -------------------------------------------------------------------*/
1608cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
1609cda55fadSBarry Smith        MatGetRow_MPIAIJ,
1610cda55fadSBarry Smith        MatRestoreRow_MPIAIJ,
1611cda55fadSBarry Smith        MatMult_MPIAIJ,
161297304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ,
16137c922b88SBarry Smith        MatMultTranspose_MPIAIJ,
16147c922b88SBarry Smith        MatMultTransposeAdd_MPIAIJ,
1615cda55fadSBarry Smith        0,
1616cda55fadSBarry Smith        0,
1617cda55fadSBarry Smith        0,
161897304618SKris Buschelman /*10*/ 0,
1619cda55fadSBarry Smith        0,
1620cda55fadSBarry Smith        0,
162144a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1622b7c46309SBarry Smith        MatTranspose_MPIAIJ,
162397304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ,
1624cda55fadSBarry Smith        MatEqual_MPIAIJ,
1625cda55fadSBarry Smith        MatGetDiagonal_MPIAIJ,
1626cda55fadSBarry Smith        MatDiagonalScale_MPIAIJ,
1627cda55fadSBarry Smith        MatNorm_MPIAIJ,
162897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ,
1629cda55fadSBarry Smith        MatAssemblyEnd_MPIAIJ,
16301eb62cbbSBarry Smith        0,
1631cda55fadSBarry Smith        MatSetOption_MPIAIJ,
1632cda55fadSBarry Smith        MatZeroEntries_MPIAIJ,
163397304618SKris Buschelman /*25*/ MatZeroRows_MPIAIJ,
1634cda55fadSBarry Smith        0,
1635cda55fadSBarry Smith        0,
1636cda55fadSBarry Smith        0,
1637cda55fadSBarry Smith        0,
163897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIAIJ,
1639cda55fadSBarry Smith        0,
1640cda55fadSBarry Smith        0,
1641cda55fadSBarry Smith        0,
1642cda55fadSBarry Smith        0,
164397304618SKris Buschelman /*35*/ MatDuplicate_MPIAIJ,
1644cda55fadSBarry Smith        0,
1645cda55fadSBarry Smith        0,
1646cda55fadSBarry Smith        0,
1647cda55fadSBarry Smith        0,
164897304618SKris Buschelman /*40*/ MatAXPY_MPIAIJ,
1649cda55fadSBarry Smith        MatGetSubMatrices_MPIAIJ,
1650cda55fadSBarry Smith        MatIncreaseOverlap_MPIAIJ,
1651cda55fadSBarry Smith        MatGetValues_MPIAIJ,
1652cb5b572fSBarry Smith        MatCopy_MPIAIJ,
165397304618SKris Buschelman /*45*/ MatPrintHelp_MPIAIJ,
1654cda55fadSBarry Smith        MatScale_MPIAIJ,
1655cda55fadSBarry Smith        0,
1656cda55fadSBarry Smith        0,
1657cda55fadSBarry Smith        0,
1658521d7252SBarry Smith /*50*/ MatSetBlockSize_MPIAIJ,
1659cda55fadSBarry Smith        0,
1660cda55fadSBarry Smith        0,
1661cda55fadSBarry Smith        0,
1662cda55fadSBarry Smith        0,
166397304618SKris Buschelman /*55*/ MatFDColoringCreate_MPIAIJ,
1664cda55fadSBarry Smith        0,
1665cda55fadSBarry Smith        MatSetUnfactored_MPIAIJ,
1666cda55fadSBarry Smith        0,
1667cda55fadSBarry Smith        0,
166897304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIAIJ,
1669e03a110bSBarry Smith        MatDestroy_MPIAIJ,
1670e03a110bSBarry Smith        MatView_MPIAIJ,
16718a124369SBarry Smith        MatGetPetscMaps_Petsc,
1672a2243be0SBarry Smith        0,
167397304618SKris Buschelman /*65*/ 0,
1674a2243be0SBarry Smith        0,
1675a2243be0SBarry Smith        0,
1676a2243be0SBarry Smith        0,
1677a2243be0SBarry Smith        0,
167897304618SKris Buschelman /*70*/ 0,
1679a2243be0SBarry Smith        0,
1680a2243be0SBarry Smith        MatSetColoring_MPIAIJ,
1681779c1a83SBarry Smith        MatSetValuesAdic_MPIAIJ,
168297304618SKris Buschelman        MatSetValuesAdifor_MPIAIJ,
168397304618SKris Buschelman /*75*/ 0,
168497304618SKris Buschelman        0,
168597304618SKris Buschelman        0,
168697304618SKris Buschelman        0,
168797304618SKris Buschelman        0,
168897304618SKris Buschelman /*80*/ 0,
168997304618SKris Buschelman        0,
169097304618SKris Buschelman        0,
169197304618SKris Buschelman        0,
169241acf15aSKris Buschelman /*84*/ MatLoad_MPIAIJ,
16936284ec50SHong Zhang        0,
16946284ec50SHong Zhang        0,
16956284ec50SHong Zhang        0,
16966284ec50SHong Zhang        0,
1697865e5f61SKris Buschelman        0,
1698865e5f61SKris Buschelman /*90*/ MatMatMult_MPIAIJ_MPIAIJ,
169926be0446SHong Zhang        MatMatMultSymbolic_MPIAIJ_MPIAIJ,
170026be0446SHong Zhang        MatMatMultNumeric_MPIAIJ_MPIAIJ,
1701ff134f7aSHong Zhang        MatPtAP_MPIAIJ_MPIAIJ,
1702865e5f61SKris Buschelman        MatPtAPSymbolic_MPIAIJ_MPIAIJ,
1703865e5f61SKris Buschelman /*95*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
1704865e5f61SKris Buschelman        0,
1705865e5f61SKris Buschelman        0,
1706865e5f61SKris Buschelman        0};
170736ce4990SBarry Smith 
17082e8a6d31SBarry Smith /* ----------------------------------------------------------------------------------------*/
17092e8a6d31SBarry Smith 
1710fb2e594dSBarry Smith EXTERN_C_BEGIN
17114a2ae208SSatish Balay #undef __FUNCT__
17124a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIAIJ"
1713dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
17142e8a6d31SBarry Smith {
17152e8a6d31SBarry Smith   Mat_MPIAIJ     *aij = (Mat_MPIAIJ *)mat->data;
1716dfbe8321SBarry Smith   PetscErrorCode ierr;
17172e8a6d31SBarry Smith 
17182e8a6d31SBarry Smith   PetscFunctionBegin;
17192e8a6d31SBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
17202e8a6d31SBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
17212e8a6d31SBarry Smith   PetscFunctionReturn(0);
17222e8a6d31SBarry Smith }
1723fb2e594dSBarry Smith EXTERN_C_END
17242e8a6d31SBarry Smith 
1725fb2e594dSBarry Smith EXTERN_C_BEGIN
17264a2ae208SSatish Balay #undef __FUNCT__
17274a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIAIJ"
1728dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
17292e8a6d31SBarry Smith {
17302e8a6d31SBarry Smith   Mat_MPIAIJ     *aij = (Mat_MPIAIJ *)mat->data;
1731dfbe8321SBarry Smith   PetscErrorCode ierr;
17322e8a6d31SBarry Smith 
17332e8a6d31SBarry Smith   PetscFunctionBegin;
17342e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
17352e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
17362e8a6d31SBarry Smith   PetscFunctionReturn(0);
17372e8a6d31SBarry Smith }
1738fb2e594dSBarry Smith EXTERN_C_END
17398a729477SBarry Smith 
1740e090d566SSatish Balay #include "petscpc.h"
174127508adbSBarry Smith EXTERN_C_BEGIN
17424a2ae208SSatish Balay #undef __FUNCT__
1743a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIAIJSetPreallocation_MPIAIJ"
1744b1d57f15SBarry Smith PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1745a23d5eceSKris Buschelman {
1746a23d5eceSKris Buschelman   Mat_MPIAIJ     *b;
1747dfbe8321SBarry Smith   PetscErrorCode ierr;
1748b1d57f15SBarry Smith   PetscInt       i;
1749a23d5eceSKris Buschelman 
1750a23d5eceSKris Buschelman   PetscFunctionBegin;
1751a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1752a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
1753a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
175477431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
175577431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1756a23d5eceSKris Buschelman   if (d_nnz) {
1757a23d5eceSKris Buschelman     for (i=0; i<B->m; i++) {
175877431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]);
1759a23d5eceSKris Buschelman     }
1760a23d5eceSKris Buschelman   }
1761a23d5eceSKris Buschelman   if (o_nnz) {
1762a23d5eceSKris Buschelman     for (i=0; i<B->m; i++) {
176377431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]);
1764a23d5eceSKris Buschelman     }
1765a23d5eceSKris Buschelman   }
1766a23d5eceSKris Buschelman   b = (Mat_MPIAIJ*)B->data;
1767c60e587dSKris Buschelman   ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr);
1768c60e587dSKris Buschelman   ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr);
1769a23d5eceSKris Buschelman 
1770a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1771a23d5eceSKris Buschelman }
1772a23d5eceSKris Buschelman EXTERN_C_END
1773a23d5eceSKris Buschelman 
17740bad9183SKris Buschelman /*MC
1775002d173eSKris Buschelman    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
1776209238afSKris Buschelman 
1777209238afSKris Buschelman    This matrix type is identical to MATSEQAIJ when constructed with a single process communicator,
177830e3259aSHong Zhang    and MATMPIAIJ otherwise.  As a result, for single process communicators,
177930e3259aSHong Zhang   MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported
178030e3259aSHong Zhang   for communicators controlling multiple processes.  It is recommended that you call both of
178130e3259aSHong Zhang   the above preallocation routines for simplicity.
1782209238afSKris Buschelman 
1783209238afSKris Buschelman    Options Database Keys:
1784209238afSKris Buschelman . -mat_type aij - sets the matrix type to "aij" during a call to MatSetFromOptions()
1785209238afSKris Buschelman 
1786209238afSKris Buschelman   Level: beginner
1787209238afSKris Buschelman 
1788209238afSKris Buschelman .seealso: MatCreateMPIAIJ,MATSEQAIJ,MATMPIAIJ
1789209238afSKris Buschelman M*/
1790209238afSKris Buschelman 
1791209238afSKris Buschelman EXTERN_C_BEGIN
1792209238afSKris Buschelman #undef __FUNCT__
1793209238afSKris Buschelman #define __FUNCT__ "MatCreate_AIJ"
1794dfbe8321SBarry Smith PetscErrorCode MatCreate_AIJ(Mat A)
1795dfbe8321SBarry Smith {
17966849ba73SBarry Smith   PetscErrorCode ierr;
1797b1d57f15SBarry Smith   PetscMPIInt    size;
1798209238afSKris Buschelman 
1799209238afSKris Buschelman   PetscFunctionBegin;
1800209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATAIJ);CHKERRQ(ierr);
1801209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1802209238afSKris Buschelman   if (size == 1) {
1803209238afSKris Buschelman     ierr = MatSetType(A,MATSEQAIJ);CHKERRQ(ierr);
1804209238afSKris Buschelman   } else {
1805209238afSKris Buschelman     ierr = MatSetType(A,MATMPIAIJ);CHKERRQ(ierr);
1806209238afSKris Buschelman   }
1807209238afSKris Buschelman   PetscFunctionReturn(0);
1808209238afSKris Buschelman }
1809209238afSKris Buschelman EXTERN_C_END
1810209238afSKris Buschelman 
18114a2ae208SSatish Balay #undef __FUNCT__
18124a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIAIJ"
1813dfbe8321SBarry Smith PetscErrorCode MatDuplicate_MPIAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1814d6dfbf8fSBarry Smith {
1815d6dfbf8fSBarry Smith   Mat            mat;
1816416022c9SBarry Smith   Mat_MPIAIJ     *a,*oldmat = (Mat_MPIAIJ*)matin->data;
1817dfbe8321SBarry Smith   PetscErrorCode ierr;
1818d6dfbf8fSBarry Smith 
18193a40ed3dSBarry Smith   PetscFunctionBegin;
1820416022c9SBarry Smith   *newmat       = 0;
1821273d9f13SBarry Smith   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1822be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
18231d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1824273d9f13SBarry Smith   a    = (Mat_MPIAIJ*)mat->data;
1825e1b6402fSHong Zhang 
1826d6dfbf8fSBarry Smith   mat->factor       = matin->factor;
1827521d7252SBarry Smith   mat->bs           = matin->bs;
1828c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1829e7641de0SSatish Balay   mat->insertmode   = NOT_SET_VALUES;
1830273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
1831d6dfbf8fSBarry Smith 
1832416022c9SBarry Smith   a->rstart       = oldmat->rstart;
1833416022c9SBarry Smith   a->rend         = oldmat->rend;
1834416022c9SBarry Smith   a->cstart       = oldmat->cstart;
1835416022c9SBarry Smith   a->cend         = oldmat->cend;
183617699dbbSLois Curfman McInnes   a->size         = oldmat->size;
183717699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
1838e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
1839e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
1840e7641de0SSatish Balay   a->rowindices   = 0;
1841bcd2baecSBarry Smith   a->rowvalues    = 0;
1842bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
1843d6dfbf8fSBarry Smith 
1844b1d57f15SBarry Smith   ierr       = PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
18458798bf22SSatish Balay   ierr       = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
18462ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
1847aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
18480f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1849b1fc9764SSatish Balay #else
1850b1d57f15SBarry Smith     ierr = PetscMalloc((mat->N)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
1851b1d57f15SBarry Smith     PetscLogObjectMemory(mat,(mat->N)*sizeof(PetscInt));
1852b1d57f15SBarry Smith     ierr      = PetscMemcpy(a->colmap,oldmat->colmap,(mat->N)*sizeof(PetscInt));CHKERRQ(ierr);
1853b1fc9764SSatish Balay #endif
1854416022c9SBarry Smith   } else a->colmap = 0;
18553f41c07dSBarry Smith   if (oldmat->garray) {
1856b1d57f15SBarry Smith     PetscInt len;
1857273d9f13SBarry Smith     len  = oldmat->B->n;
1858b1d57f15SBarry Smith     ierr = PetscMalloc((len+1)*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
1859b1d57f15SBarry Smith     PetscLogObjectMemory(mat,len*sizeof(PetscInt));
1860b1d57f15SBarry Smith     if (len) { ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); }
1861416022c9SBarry Smith   } else a->garray = 0;
1862d6dfbf8fSBarry Smith 
1863416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
1864b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
1865a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
1866b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
18674efcb820SBarry Smith   ierr =  MatDestroy(a->A);CHKERRQ(ierr);
18682e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
1869b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
18704efcb820SBarry Smith   ierr =  MatDestroy(a->B);CHKERRQ(ierr);
18712e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
1872b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
1873b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
18748a729477SBarry Smith   *newmat = mat;
18753a40ed3dSBarry Smith   PetscFunctionReturn(0);
18768a729477SBarry Smith }
1877416022c9SBarry Smith 
1878e090d566SSatish Balay #include "petscsys.h"
1879416022c9SBarry Smith 
18804a2ae208SSatish Balay #undef __FUNCT__
18814a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIAIJ"
1882dfbe8321SBarry Smith PetscErrorCode MatLoad_MPIAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
1883416022c9SBarry Smith {
1884d65a2f8fSBarry Smith   Mat            A;
188587828ca2SBarry Smith   PetscScalar    *vals,*svals;
188619bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
1887416022c9SBarry Smith   MPI_Status     status;
18886849ba73SBarry Smith   PetscErrorCode ierr;
1889dc231df0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,maxnz;
1890b1d57f15SBarry Smith   PetscInt       i,nz,j,rstart,rend;
1891b1d57f15SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
1892b1d57f15SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
1893dc231df0SBarry Smith   PetscInt       cend,cstart,n,*rowners;
1894b1d57f15SBarry Smith   int            fd;
1895416022c9SBarry Smith 
18963a40ed3dSBarry Smith   PetscFunctionBegin;
18971dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
18981dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
189917699dbbSLois Curfman McInnes   if (!rank) {
1900b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
19010752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1902552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
19036c5fab8fSBarry Smith   }
19046c5fab8fSBarry Smith 
1905b1d57f15SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
1906416022c9SBarry Smith   M = header[1]; N = header[2];
1907416022c9SBarry Smith   /* determine ownership of all rows */
190829cdbbc8SSatish Balay   m    = M/size + ((M % size) > rank);
1909dc231df0SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
1910dc231df0SBarry Smith   ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
1911416022c9SBarry Smith   rowners[0] = 0;
191217699dbbSLois Curfman McInnes   for (i=2; i<=size; i++) {
1913416022c9SBarry Smith     rowners[i] += rowners[i-1];
1914416022c9SBarry Smith   }
191517699dbbSLois Curfman McInnes   rstart = rowners[rank];
191617699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1917416022c9SBarry Smith 
1918416022c9SBarry Smith   /* distribute row lengths to all processors */
1919dc231df0SBarry Smith   ierr    = PetscMalloc2(m,PetscInt,&ourlens,m,PetscInt,&offlens);CHKERRQ(ierr);
192017699dbbSLois Curfman McInnes   if (!rank) {
1921dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,ourlens,m,PETSC_INT);CHKERRQ(ierr);
1922dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
1923b1d57f15SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
1924b1d57f15SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
1925dc231df0SBarry Smith     for (j=0; j<m; j++) {
1926dc231df0SBarry Smith       procsnz[0] += ourlens[j];
1927dc231df0SBarry Smith     }
1928dc231df0SBarry Smith     for (i=1; i<size; i++) {
1929dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,rowners[i+1]-rowners[i],PETSC_INT);CHKERRQ(ierr);
1930dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
1931dc231df0SBarry Smith       for (j=0; j<rowners[i+1]-rowners[i]; j++) {
1932416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1933416022c9SBarry Smith       }
1934dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,rowners[i+1]-rowners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
1935416022c9SBarry Smith     }
1936606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1937dc231df0SBarry Smith   } else {
1938dc231df0SBarry Smith     ierr = MPI_Recv(ourlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
1939dc231df0SBarry Smith   }
1940416022c9SBarry Smith 
1941dc231df0SBarry Smith   if (!rank) {
1942416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1943416022c9SBarry Smith     maxnz = 0;
1944*8a8e0b3aSBarry Smith     for (i=0; i<size; i++) {
19450452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1946416022c9SBarry Smith     }
1947b1d57f15SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
1948416022c9SBarry Smith 
1949416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1950416022c9SBarry Smith     nz   = procsnz[0];
1951b1d57f15SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19520752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
1953d65a2f8fSBarry Smith 
1954d65a2f8fSBarry Smith     /* read in every one elses and ship off */
195517699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
1956d65a2f8fSBarry Smith       nz   = procsnz[i];
19570752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
1958b1d57f15SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
1959d65a2f8fSBarry Smith     }
1960606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
19613a40ed3dSBarry Smith   } else {
1962416022c9SBarry Smith     /* determine buffer space needed for message */
1963416022c9SBarry Smith     nz = 0;
1964416022c9SBarry Smith     for (i=0; i<m; i++) {
1965416022c9SBarry Smith       nz += ourlens[i];
1966416022c9SBarry Smith     }
1967dc231df0SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
1968416022c9SBarry Smith 
1969416022c9SBarry Smith     /* receive message of column indices*/
1970b1d57f15SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
1971b1d57f15SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
197229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
1973416022c9SBarry Smith   }
1974416022c9SBarry Smith 
1975b362ba68SBarry Smith   /* determine column ownership if matrix is not square */
1976b362ba68SBarry Smith   if (N != M) {
1977b362ba68SBarry Smith     n      = N/size + ((N % size) > rank);
1978b1d57f15SBarry Smith     ierr   = MPI_Scan(&n,&cend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
1979b362ba68SBarry Smith     cstart = cend - n;
1980b362ba68SBarry Smith   } else {
1981b362ba68SBarry Smith     cstart = rstart;
1982b362ba68SBarry Smith     cend   = rend;
1983fb2e594dSBarry Smith     n      = cend - cstart;
1984b362ba68SBarry Smith   }
1985b362ba68SBarry Smith 
1986416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1987b1d57f15SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
1988416022c9SBarry Smith   jj = 0;
1989416022c9SBarry Smith   for (i=0; i<m; i++) {
1990416022c9SBarry Smith     for (j=0; j<ourlens[i]; j++) {
1991b362ba68SBarry Smith       if (mycols[jj] < cstart || mycols[jj] >= cend) offlens[i]++;
1992416022c9SBarry Smith       jj++;
1993416022c9SBarry Smith     }
1994416022c9SBarry Smith   }
1995d65a2f8fSBarry Smith 
1996d65a2f8fSBarry Smith   /* create our matrix */
1997416022c9SBarry Smith   for (i=0; i<m; i++) {
1998416022c9SBarry Smith     ourlens[i] -= offlens[i];
1999416022c9SBarry Smith   }
2000d10c748bSKris Buschelman   ierr = MatCreate(comm,m,n,M,N,&A);CHKERRQ(ierr);
2001d10c748bSKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
2002d10c748bSKris Buschelman   ierr = MatMPIAIJSetPreallocation(A,0,ourlens,0,offlens);CHKERRQ(ierr);
2003d10c748bSKris Buschelman 
2004fb2e594dSBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2005d65a2f8fSBarry Smith   for (i=0; i<m; i++) {
2006d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
2007d65a2f8fSBarry Smith   }
2008416022c9SBarry Smith 
200917699dbbSLois Curfman McInnes   if (!rank) {
201087828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
2011416022c9SBarry Smith 
2012416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
2013416022c9SBarry Smith     nz   = procsnz[0];
20140752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2015d65a2f8fSBarry Smith 
2016d65a2f8fSBarry Smith     /* insert into matrix */
2017d65a2f8fSBarry Smith     jj      = rstart;
2018d65a2f8fSBarry Smith     smycols = mycols;
2019d65a2f8fSBarry Smith     svals   = vals;
2020d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
2021dc231df0SBarry Smith       ierr = MatSetValues_MPIAIJ(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
2022d65a2f8fSBarry Smith       smycols += ourlens[i];
2023d65a2f8fSBarry Smith       svals   += ourlens[i];
2024d65a2f8fSBarry Smith       jj++;
2025416022c9SBarry Smith     }
2026416022c9SBarry Smith 
2027d65a2f8fSBarry Smith     /* read in other processors and ship out */
202817699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
2029416022c9SBarry Smith       nz   = procsnz[i];
20300752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2031ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2032416022c9SBarry Smith     }
2033606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
20343a40ed3dSBarry Smith   } else {
2035d65a2f8fSBarry Smith     /* receive numeric values */
203687828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
2037416022c9SBarry Smith 
2038d65a2f8fSBarry Smith     /* receive message of values*/
2039ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2040ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
204129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2042d65a2f8fSBarry Smith 
2043d65a2f8fSBarry Smith     /* insert into matrix */
2044d65a2f8fSBarry Smith     jj      = rstart;
2045d65a2f8fSBarry Smith     smycols = mycols;
2046d65a2f8fSBarry Smith     svals   = vals;
2047d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
2048dc231df0SBarry Smith       ierr     = MatSetValues_MPIAIJ(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
2049d65a2f8fSBarry Smith       smycols += ourlens[i];
2050d65a2f8fSBarry Smith       svals   += ourlens[i];
2051d65a2f8fSBarry Smith       jj++;
2052d65a2f8fSBarry Smith     }
2053d65a2f8fSBarry Smith   }
2054dc231df0SBarry Smith   ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr);
2055606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
2056606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
2057606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2058d65a2f8fSBarry Smith 
20596d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20606d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2061d10c748bSKris Buschelman   *newmat = A;
20623a40ed3dSBarry Smith   PetscFunctionReturn(0);
2063416022c9SBarry Smith }
2064a0ff6018SBarry Smith 
20654a2ae208SSatish Balay #undef __FUNCT__
20664a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIAIJ"
2067a0ff6018SBarry Smith /*
206829da9460SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqAIJ
206929da9460SBarry Smith   in local and then by concatenating the local matrices the end result.
207029da9460SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIAIJ()
2071a0ff6018SBarry Smith */
2072b1d57f15SBarry Smith PetscErrorCode MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
2073a0ff6018SBarry Smith {
2074dfbe8321SBarry Smith   PetscErrorCode ierr;
207532dcc486SBarry Smith   PetscMPIInt    rank,size;
2076b1d57f15SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j;
2077b1d57f15SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
2078fee21e36SBarry Smith   Mat            *local,M,Mreuse;
207987828ca2SBarry Smith   PetscScalar    *vwork,*aa;
208000e6dbe6SBarry Smith   MPI_Comm       comm = mat->comm;
208100e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
20827e2c5f70SBarry Smith 
2083a0ff6018SBarry Smith 
2084a0ff6018SBarry Smith   PetscFunctionBegin;
20851dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
20861dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
208700e6dbe6SBarry Smith 
2088fee21e36SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
2089fee21e36SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
2090e005ede5SBarry Smith     if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2091fee21e36SBarry Smith     local = &Mreuse;
2092fee21e36SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
2093fee21e36SBarry Smith   } else {
2094a0ff6018SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
2095fee21e36SBarry Smith     Mreuse = *local;
2096606d414cSSatish Balay     ierr   = PetscFree(local);CHKERRQ(ierr);
2097fee21e36SBarry Smith   }
2098a0ff6018SBarry Smith 
2099a0ff6018SBarry Smith   /*
2100a0ff6018SBarry Smith       m - number of local rows
2101a0ff6018SBarry Smith       n - number of columns (same on all processors)
2102a0ff6018SBarry Smith       rstart - first row in new global matrix generated
2103a0ff6018SBarry Smith   */
2104fee21e36SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
2105a0ff6018SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
2106fee21e36SBarry Smith     aij = (Mat_SeqAIJ*)(Mreuse)->data;
210700e6dbe6SBarry Smith     ii  = aij->i;
210800e6dbe6SBarry Smith     jj  = aij->j;
210900e6dbe6SBarry Smith 
2110a0ff6018SBarry Smith     /*
211100e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
211200e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
2113a0ff6018SBarry Smith     */
211400e6dbe6SBarry Smith 
211500e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
21166a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
2117ab50ec6bSBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
2118ab50ec6bSBarry Smith       if (mglobal == n) { /* square matrix */
2119e2c4fddaSBarry Smith 	nlocal = m;
21206a6a5d1dSBarry Smith       } else {
2121ab50ec6bSBarry Smith         nlocal = n/size + ((n % size) > rank);
2122ab50ec6bSBarry Smith       }
2123ab50ec6bSBarry Smith     } else {
21246a6a5d1dSBarry Smith       nlocal = csize;
21256a6a5d1dSBarry Smith     }
2126b1d57f15SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
212700e6dbe6SBarry Smith     rstart = rend - nlocal;
21286a6a5d1dSBarry Smith     if (rank == size - 1 && rend != n) {
212977431f27SBarry Smith       SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
21306a6a5d1dSBarry Smith     }
213100e6dbe6SBarry Smith 
213200e6dbe6SBarry Smith     /* next, compute all the lengths */
2133b1d57f15SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
213400e6dbe6SBarry Smith     olens = dlens + m;
213500e6dbe6SBarry Smith     for (i=0; i<m; i++) {
213600e6dbe6SBarry Smith       jend = ii[i+1] - ii[i];
213700e6dbe6SBarry Smith       olen = 0;
213800e6dbe6SBarry Smith       dlen = 0;
213900e6dbe6SBarry Smith       for (j=0; j<jend; j++) {
214000e6dbe6SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
214100e6dbe6SBarry Smith         else dlen++;
214200e6dbe6SBarry Smith         jj++;
214300e6dbe6SBarry Smith       }
214400e6dbe6SBarry Smith       olens[i] = olen;
214500e6dbe6SBarry Smith       dlens[i] = dlen;
214600e6dbe6SBarry Smith     }
2147e2d9671bSKris Buschelman     ierr = MatCreate(comm,m,nlocal,PETSC_DECIDE,n,&M);CHKERRQ(ierr);
2148e2d9671bSKris Buschelman     ierr = MatSetType(M,mat->type_name);CHKERRQ(ierr);
2149e2d9671bSKris Buschelman     ierr = MatMPIAIJSetPreallocation(M,0,dlens,0,olens);CHKERRQ(ierr);
2150606d414cSSatish Balay     ierr = PetscFree(dlens);CHKERRQ(ierr);
2151a0ff6018SBarry Smith   } else {
2152b1d57f15SBarry Smith     PetscInt ml,nl;
2153a0ff6018SBarry Smith 
2154a0ff6018SBarry Smith     M = *newmat;
2155a0ff6018SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
215629bbc08cSBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
2157a0ff6018SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
2158c48de900SBarry Smith     /*
2159c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
2160c48de900SBarry Smith        rather than the slower MatSetValues().
2161c48de900SBarry Smith     */
2162c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
2163c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
2164a0ff6018SBarry Smith   }
2165a0ff6018SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
2166fee21e36SBarry Smith   aij = (Mat_SeqAIJ*)(Mreuse)->data;
216700e6dbe6SBarry Smith   ii  = aij->i;
216800e6dbe6SBarry Smith   jj  = aij->j;
216900e6dbe6SBarry Smith   aa  = aij->a;
2170a0ff6018SBarry Smith   for (i=0; i<m; i++) {
2171a0ff6018SBarry Smith     row   = rstart + i;
217200e6dbe6SBarry Smith     nz    = ii[i+1] - ii[i];
217300e6dbe6SBarry Smith     cwork = jj;     jj += nz;
217400e6dbe6SBarry Smith     vwork = aa;     aa += nz;
21758c638d02SBarry Smith     ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
2176a0ff6018SBarry Smith   }
2177a0ff6018SBarry Smith 
2178a0ff6018SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2179a0ff6018SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2180a0ff6018SBarry Smith   *newmat = M;
2181fee21e36SBarry Smith 
2182fee21e36SBarry Smith   /* save submatrix used in processor for next request */
2183fee21e36SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
2184fee21e36SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
2185fee21e36SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
2186fee21e36SBarry Smith   }
2187fee21e36SBarry Smith 
2188a0ff6018SBarry Smith   PetscFunctionReturn(0);
2189a0ff6018SBarry Smith }
2190273d9f13SBarry Smith 
2191e2e86b8fSSatish Balay EXTERN_C_BEGIN
21924a2ae208SSatish Balay #undef __FUNCT__
2193ccd8e176SBarry Smith #define __FUNCT__ "MatMPIAIJSetPreallocationCSR_MPIAIJ"
2194ccd8e176SBarry Smith PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B,const PetscInt I[],const PetscInt J[],const PetscScalar v[])
2195ccd8e176SBarry Smith {
2196ccd8e176SBarry Smith   Mat_MPIAIJ     *b = (Mat_MPIAIJ *)B->data;
2197ccd8e176SBarry Smith   PetscInt       m = B->m,cstart = b->cstart, cend = b->cend,j,nnz,i,d;
2198ccd8e176SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = b->rstart,ii;
2199ccd8e176SBarry Smith   const PetscInt *JJ;
2200ccd8e176SBarry Smith   PetscScalar    *values;
2201ccd8e176SBarry Smith   PetscErrorCode ierr;
2202ccd8e176SBarry Smith 
2203ccd8e176SBarry Smith   PetscFunctionBegin;
2204ccd8e176SBarry Smith #if defined(PETSC_OPT_g)
2205ccd8e176SBarry Smith   if (I[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"I[0] must be 0 it is %D",I[0]);
2206ccd8e176SBarry Smith #endif
2207ccd8e176SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2208ccd8e176SBarry Smith   o_nnz = d_nnz + m;
2209ccd8e176SBarry Smith 
2210ccd8e176SBarry Smith   for (i=0; i<m; i++) {
2211ccd8e176SBarry Smith     nnz     = I[i+1]- I[i];
2212ccd8e176SBarry Smith     JJ      = J + I[i];
2213ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2214ccd8e176SBarry Smith #if defined(PETSC_OPT_g)
2215ccd8e176SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
2216ccd8e176SBarry Smith #endif
2217ccd8e176SBarry Smith     for (j=0; j<nnz; j++) {
2218ccd8e176SBarry Smith       if (*JJ >= cstart) break;
2219ccd8e176SBarry Smith       JJ++;
2220ccd8e176SBarry Smith     }
2221ccd8e176SBarry Smith     d = 0;
2222ccd8e176SBarry Smith     for (; j<nnz; j++) {
2223ccd8e176SBarry Smith       if (*JJ++ >= cend) break;
2224ccd8e176SBarry Smith       d++;
2225ccd8e176SBarry Smith     }
2226ccd8e176SBarry Smith     d_nnz[i] = d;
2227ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
2228ccd8e176SBarry Smith   }
2229ccd8e176SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2230ccd8e176SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2231ccd8e176SBarry Smith 
2232ccd8e176SBarry Smith   if (v) values = (PetscScalar*)v;
2233ccd8e176SBarry Smith   else {
2234ccd8e176SBarry Smith     ierr = PetscMalloc((nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2235ccd8e176SBarry Smith     ierr = PetscMemzero(values,nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2236ccd8e176SBarry Smith   }
2237ccd8e176SBarry Smith 
2238ccd8e176SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2239ccd8e176SBarry Smith   for (i=0; i<m; i++) {
2240ccd8e176SBarry Smith     ii   = i + rstart;
2241ccd8e176SBarry Smith     nnz  = I[i+1]- I[i];
2242ccd8e176SBarry Smith     ierr = MatSetValues_MPIAIJ(B,1,&ii,nnz,J+I[i],values,INSERT_VALUES);CHKERRQ(ierr);
2243ccd8e176SBarry Smith   }
2244ccd8e176SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2245ccd8e176SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2246ccd8e176SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2247ccd8e176SBarry Smith 
2248ccd8e176SBarry Smith   if (!v) {
2249ccd8e176SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2250ccd8e176SBarry Smith   }
2251ccd8e176SBarry Smith   PetscFunctionReturn(0);
2252ccd8e176SBarry Smith }
2253e2e86b8fSSatish Balay EXTERN_C_END
2254ccd8e176SBarry Smith 
2255ccd8e176SBarry Smith #undef __FUNCT__
2256ccd8e176SBarry Smith #define __FUNCT__ "MatMPIAIJSetPreallocationCSR"
2257ccd8e176SBarry Smith /*@C
2258ccd8e176SBarry Smith    MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2259ccd8e176SBarry Smith    (the default parallel PETSc format).
2260ccd8e176SBarry Smith 
2261ccd8e176SBarry Smith    Collective on MPI_Comm
2262ccd8e176SBarry Smith 
2263ccd8e176SBarry Smith    Input Parameters:
2264ccd8e176SBarry Smith +  A - the matrix
2265ccd8e176SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2266ccd8e176SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2267ccd8e176SBarry Smith -  v - optional values in the matrix
2268ccd8e176SBarry Smith 
2269ccd8e176SBarry Smith    Level: developer
2270ccd8e176SBarry Smith 
2271ccd8e176SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2272ccd8e176SBarry Smith 
2273ccd8e176SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2274ccd8e176SBarry Smith @*/
2275ccd8e176SBarry Smith PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2276ccd8e176SBarry Smith {
2277ccd8e176SBarry Smith   PetscErrorCode ierr,(*f)(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]);
2278ccd8e176SBarry Smith 
2279ccd8e176SBarry Smith   PetscFunctionBegin;
2280ccd8e176SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2281ccd8e176SBarry Smith   if (f) {
2282ccd8e176SBarry Smith     ierr = (*f)(B,i,j,v);CHKERRQ(ierr);
2283ccd8e176SBarry Smith   }
2284ccd8e176SBarry Smith   PetscFunctionReturn(0);
2285ccd8e176SBarry Smith }
2286ccd8e176SBarry Smith 
2287ccd8e176SBarry Smith #undef __FUNCT__
22884a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJSetPreallocation"
2289273d9f13SBarry Smith /*@C
2290ccd8e176SBarry Smith    MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in AIJ format
2291273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
2292273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2293273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2294273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2295273d9f13SBarry Smith 
2296273d9f13SBarry Smith    Collective on MPI_Comm
2297273d9f13SBarry Smith 
2298273d9f13SBarry Smith    Input Parameters:
2299273d9f13SBarry Smith +  A - the matrix
2300273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
2301273d9f13SBarry Smith            (same value is used for all local rows)
2302273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
2303273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
2304273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
2305273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
2306273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
2307273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2308273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2309273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2310273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2311273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2312273d9f13SBarry Smith            structure. The size of this array is equal to the number
2313273d9f13SBarry Smith            of local rows, i.e 'm'.
2314273d9f13SBarry Smith 
231549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
231649a6f317SBarry Smith 
2317273d9f13SBarry Smith    The AIJ format (also called the Yale sparse matrix format or
2318ccd8e176SBarry Smith    compressed row storage (CSR)), is fully compatible with standard Fortran 77
2319ccd8e176SBarry Smith    storage.  The stored row and column indices begin with zero.  See the users manual for details.
2320273d9f13SBarry Smith 
2321273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2322273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2323273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2324273d9f13SBarry Smith 
2325273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2326273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2327273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2328273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2329273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2330273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2331273d9f13SBarry Smith 
2332273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2333273d9f13SBarry Smith 
2334273d9f13SBarry Smith    Example usage:
2335273d9f13SBarry Smith 
2336273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2337273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2338273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2339273d9f13SBarry Smith    as follows:
2340273d9f13SBarry Smith 
2341273d9f13SBarry Smith .vb
2342273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2343273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2344273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2345273d9f13SBarry Smith     -------------------------------------
2346273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2347273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2348273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2349273d9f13SBarry Smith     -------------------------------------
2350273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2351273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2352273d9f13SBarry Smith .ve
2353273d9f13SBarry Smith 
2354273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2355273d9f13SBarry Smith 
2356273d9f13SBarry Smith .vb
2357273d9f13SBarry Smith       A B C
2358273d9f13SBarry Smith       D E F
2359273d9f13SBarry Smith       G H I
2360273d9f13SBarry Smith .ve
2361273d9f13SBarry Smith 
2362273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2363273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2364273d9f13SBarry Smith 
2365273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2366273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2367273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2368273d9f13SBarry Smith 
2369273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2370273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2371273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2372273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2373273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2374273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2375273d9f13SBarry Smith 
2376273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2377273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2378273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2379273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2380273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2381273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2382273d9f13SBarry Smith .vb
2383273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2384273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2385273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2386273d9f13SBarry Smith .ve
2387273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2388273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2389273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2390273d9f13SBarry Smith    34 values.
2391273d9f13SBarry Smith 
2392273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2393273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2394273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2395273d9f13SBarry Smith .vb
2396273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2397273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2398273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2399273d9f13SBarry Smith .ve
2400273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2401273d9f13SBarry Smith    hence pre-allocation is perfect.
2402273d9f13SBarry Smith 
2403273d9f13SBarry Smith    Level: intermediate
2404273d9f13SBarry Smith 
2405273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2406273d9f13SBarry Smith 
2407ccd8e176SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIAIJ(), MatMPIAIJSetPreallocationCSR(),
2408ccd8e176SBarry Smith           MPIAIJ
2409273d9f13SBarry Smith @*/
2410b1d57f15SBarry Smith PetscErrorCode MatMPIAIJSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2411273d9f13SBarry Smith {
2412b1d57f15SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2413273d9f13SBarry Smith 
2414273d9f13SBarry Smith   PetscFunctionBegin;
2415a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2416a23d5eceSKris Buschelman   if (f) {
2417a23d5eceSKris Buschelman     ierr = (*f)(B,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2418273d9f13SBarry Smith   }
2419273d9f13SBarry Smith   PetscFunctionReturn(0);
2420273d9f13SBarry Smith }
2421273d9f13SBarry Smith 
24224a2ae208SSatish Balay #undef __FUNCT__
24234a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIAIJ"
2424273d9f13SBarry Smith /*@C
2425273d9f13SBarry Smith    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
2426273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
2427273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2428273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2429273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2430273d9f13SBarry Smith 
2431273d9f13SBarry Smith    Collective on MPI_Comm
2432273d9f13SBarry Smith 
2433273d9f13SBarry Smith    Input Parameters:
2434273d9f13SBarry Smith +  comm - MPI communicator
2435273d9f13SBarry Smith .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2436273d9f13SBarry Smith            This value should be the same as the local size used in creating the
2437273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
2438273d9f13SBarry Smith .  n - This value should be the same as the local size used in creating the
2439273d9f13SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2440273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2441273d9f13SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2442273d9f13SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2443273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
2444273d9f13SBarry Smith            (same value is used for all local rows)
2445273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
2446273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
2447273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
2448273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
2449273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
2450273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2451273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2452273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2453273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2454273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2455273d9f13SBarry Smith            structure. The size of this array is equal to the number
2456273d9f13SBarry Smith            of local rows, i.e 'm'.
2457273d9f13SBarry Smith 
2458273d9f13SBarry Smith    Output Parameter:
2459273d9f13SBarry Smith .  A - the matrix
2460273d9f13SBarry Smith 
2461273d9f13SBarry Smith    Notes:
246249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
246349a6f317SBarry Smith 
2464273d9f13SBarry Smith    m,n,M,N parameters specify the size of the matrix, and its partitioning across
2465273d9f13SBarry Smith    processors, while d_nz,d_nnz,o_nz,o_nnz parameters specify the approximate
2466273d9f13SBarry Smith    storage requirements for this matrix.
2467273d9f13SBarry Smith 
2468273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one
2469273d9f13SBarry Smith    processor than it must be used on all processors that share the object for
2470273d9f13SBarry Smith    that argument.
2471273d9f13SBarry Smith 
2472273d9f13SBarry Smith    The user MUST specify either the local or global matrix dimensions
2473273d9f13SBarry Smith    (possibly both).
2474273d9f13SBarry Smith 
2475273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2476273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2477273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2478273d9f13SBarry Smith 
2479273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2480273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2481273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2482273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2483273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2484273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2485273d9f13SBarry Smith 
2486273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2487273d9f13SBarry Smith 
248897d05335SKris Buschelman    When calling this routine with a single process communicator, a matrix of
248997d05335SKris Buschelman    type SEQAIJ is returned.  If a matrix of type MPIAIJ is desired for this
249097d05335SKris Buschelman    type of communicator, use the construction mechanism:
249197d05335SKris Buschelman      MatCreate(...,&A); MatSetType(A,MPIAIJ); MatMPIAIJSetPreallocation(A,...);
249297d05335SKris Buschelman 
2493273d9f13SBarry Smith    By default, this format uses inodes (identical nodes) when possible.
2494273d9f13SBarry Smith    We search for consecutive rows with the same nonzero structure, thereby
2495273d9f13SBarry Smith    reusing matrix information to achieve increased efficiency.
2496273d9f13SBarry Smith 
2497273d9f13SBarry Smith    Options Database Keys:
2498273d9f13SBarry Smith +  -mat_aij_no_inode  - Do not use inodes
2499273d9f13SBarry Smith .  -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5)
2500273d9f13SBarry Smith -  -mat_aij_oneindex - Internally use indexing starting at 1
2501273d9f13SBarry Smith         rather than 0.  Note that when calling MatSetValues(),
2502273d9f13SBarry Smith         the user still MUST index entries starting at 0!
2503273d9f13SBarry Smith 
2504273d9f13SBarry Smith 
2505273d9f13SBarry Smith    Example usage:
2506273d9f13SBarry Smith 
2507273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2508273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2509273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2510273d9f13SBarry Smith    as follows:
2511273d9f13SBarry Smith 
2512273d9f13SBarry Smith .vb
2513273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2514273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2515273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2516273d9f13SBarry Smith     -------------------------------------
2517273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2518273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2519273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2520273d9f13SBarry Smith     -------------------------------------
2521273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2522273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2523273d9f13SBarry Smith .ve
2524273d9f13SBarry Smith 
2525273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2526273d9f13SBarry Smith 
2527273d9f13SBarry Smith .vb
2528273d9f13SBarry Smith       A B C
2529273d9f13SBarry Smith       D E F
2530273d9f13SBarry Smith       G H I
2531273d9f13SBarry Smith .ve
2532273d9f13SBarry Smith 
2533273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2534273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2535273d9f13SBarry Smith 
2536273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2537273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2538273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2539273d9f13SBarry Smith 
2540273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2541273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2542273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2543273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2544273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2545273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2546273d9f13SBarry Smith 
2547273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2548273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2549273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2550273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2551273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2552273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2553273d9f13SBarry Smith .vb
2554273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2555273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2556273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2557273d9f13SBarry Smith .ve
2558273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2559273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2560273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2561273d9f13SBarry Smith    34 values.
2562273d9f13SBarry Smith 
2563273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2564273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2565273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2566273d9f13SBarry Smith .vb
2567273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2568273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2569273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2570273d9f13SBarry Smith .ve
2571273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2572273d9f13SBarry Smith    hence pre-allocation is perfect.
2573273d9f13SBarry Smith 
2574273d9f13SBarry Smith    Level: intermediate
2575273d9f13SBarry Smith 
2576273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2577273d9f13SBarry Smith 
2578ccd8e176SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
2579ccd8e176SBarry Smith           MPIAIJ
2580273d9f13SBarry Smith @*/
2581b1d57f15SBarry Smith PetscErrorCode MatCreateMPIAIJ(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2582273d9f13SBarry Smith {
25836849ba73SBarry Smith   PetscErrorCode ierr;
2584b1d57f15SBarry Smith   PetscMPIInt    size;
2585273d9f13SBarry Smith 
2586273d9f13SBarry Smith   PetscFunctionBegin;
2587273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2588273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2589273d9f13SBarry Smith   if (size > 1) {
2590273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIAIJ);CHKERRQ(ierr);
2591273d9f13SBarry Smith     ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2592273d9f13SBarry Smith   } else {
2593273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQAIJ);CHKERRQ(ierr);
2594273d9f13SBarry Smith     ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr);
2595273d9f13SBarry Smith   }
2596273d9f13SBarry Smith   PetscFunctionReturn(0);
2597273d9f13SBarry Smith }
2598195d93cdSBarry Smith 
25994a2ae208SSatish Balay #undef __FUNCT__
26004a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJGetSeqAIJ"
2601b1d57f15SBarry Smith PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2602195d93cdSBarry Smith {
2603195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2604b1d57f15SBarry Smith 
2605195d93cdSBarry Smith   PetscFunctionBegin;
2606195d93cdSBarry Smith   *Ad     = a->A;
2607195d93cdSBarry Smith   *Ao     = a->B;
2608195d93cdSBarry Smith   *colmap = a->garray;
2609195d93cdSBarry Smith   PetscFunctionReturn(0);
2610195d93cdSBarry Smith }
2611a2243be0SBarry Smith 
2612a2243be0SBarry Smith #undef __FUNCT__
2613a2243be0SBarry Smith #define __FUNCT__ "MatSetColoring_MPIAIJ"
2614dfbe8321SBarry Smith PetscErrorCode MatSetColoring_MPIAIJ(Mat A,ISColoring coloring)
2615a2243be0SBarry Smith {
2616dfbe8321SBarry Smith   PetscErrorCode ierr;
2617b1d57f15SBarry Smith   PetscInt       i;
2618a2243be0SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
2619a2243be0SBarry Smith 
2620a2243be0SBarry Smith   PetscFunctionBegin;
2621a2243be0SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
262208b6dcc0SBarry Smith     ISColoringValue *allcolors,*colors;
2623a2243be0SBarry Smith     ISColoring      ocoloring;
2624a2243be0SBarry Smith 
2625a2243be0SBarry Smith     /* set coloring for diagonal portion */
2626a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,coloring);CHKERRQ(ierr);
2627a2243be0SBarry Smith 
2628a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
262908b6dcc0SBarry Smith     ierr = ISAllGatherColors(A->comm,coloring->n,coloring->colors,PETSC_NULL,&allcolors);CHKERRQ(ierr);
263008b6dcc0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(ISColoringValue),&colors);CHKERRQ(ierr);
2631a2243be0SBarry Smith     for (i=0; i<a->B->n; i++) {
2632a2243be0SBarry Smith       colors[i] = allcolors[a->garray[i]];
2633a2243be0SBarry Smith     }
2634a2243be0SBarry Smith     ierr = PetscFree(allcolors);CHKERRQ(ierr);
2635a2243be0SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr);
2636a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2637a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2638a2243be0SBarry Smith   } else if (coloring->ctype == IS_COLORING_GHOSTED) {
263908b6dcc0SBarry Smith     ISColoringValue *colors;
2640b1d57f15SBarry Smith     PetscInt             *larray;
2641a2243be0SBarry Smith     ISColoring      ocoloring;
2642a2243be0SBarry Smith 
2643a2243be0SBarry Smith     /* set coloring for diagonal portion */
2644b1d57f15SBarry Smith     ierr = PetscMalloc((a->A->n+1)*sizeof(PetscInt),&larray);CHKERRQ(ierr);
2645a2243be0SBarry Smith     for (i=0; i<a->A->n; i++) {
2646a2243be0SBarry Smith       larray[i] = i + a->cstart;
2647a2243be0SBarry Smith     }
2648a2243be0SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->A->n,larray,PETSC_NULL,larray);CHKERRQ(ierr);
264908b6dcc0SBarry Smith     ierr = PetscMalloc((a->A->n+1)*sizeof(ISColoringValue),&colors);CHKERRQ(ierr);
2650a2243be0SBarry Smith     for (i=0; i<a->A->n; i++) {
2651a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2652a2243be0SBarry Smith     }
2653a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
265412c595b3SBarry Smith     ierr = ISColoringCreate(PETSC_COMM_SELF,a->A->n,colors,&ocoloring);CHKERRQ(ierr);
2655a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,ocoloring);CHKERRQ(ierr);
2656a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2657a2243be0SBarry Smith 
2658a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
2659b1d57f15SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(PetscInt),&larray);CHKERRQ(ierr);
2660a2243be0SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->B->n,a->garray,PETSC_NULL,larray);CHKERRQ(ierr);
266108b6dcc0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(ISColoringValue),&colors);CHKERRQ(ierr);
2662a2243be0SBarry Smith     for (i=0; i<a->B->n; i++) {
2663a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2664a2243be0SBarry Smith     }
2665a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
2666a2243be0SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr);
2667a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2668a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2669a2243be0SBarry Smith   } else {
267077431f27SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"No support ISColoringType %d",(int)coloring->ctype);
2671a2243be0SBarry Smith   }
2672a2243be0SBarry Smith 
2673a2243be0SBarry Smith   PetscFunctionReturn(0);
2674a2243be0SBarry Smith }
2675a2243be0SBarry Smith 
2676a2243be0SBarry Smith #undef __FUNCT__
2677779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdic_MPIAIJ"
2678dfbe8321SBarry Smith PetscErrorCode MatSetValuesAdic_MPIAIJ(Mat A,void *advalues)
2679a2243be0SBarry Smith {
2680a2243be0SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
2681dfbe8321SBarry Smith   PetscErrorCode ierr;
2682a2243be0SBarry Smith 
2683a2243be0SBarry Smith   PetscFunctionBegin;
2684779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->A,advalues);CHKERRQ(ierr);
2685779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->B,advalues);CHKERRQ(ierr);
2686779c1a83SBarry Smith   PetscFunctionReturn(0);
2687779c1a83SBarry Smith }
2688779c1a83SBarry Smith 
2689779c1a83SBarry Smith #undef __FUNCT__
2690779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdifor_MPIAIJ"
2691b1d57f15SBarry Smith PetscErrorCode MatSetValuesAdifor_MPIAIJ(Mat A,PetscInt nl,void *advalues)
2692779c1a83SBarry Smith {
2693779c1a83SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
2694dfbe8321SBarry Smith   PetscErrorCode ierr;
2695779c1a83SBarry Smith 
2696779c1a83SBarry Smith   PetscFunctionBegin;
2697779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->A,nl,advalues);CHKERRQ(ierr);
2698779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->B,nl,advalues);CHKERRQ(ierr);
2699a2243be0SBarry Smith   PetscFunctionReturn(0);
2700a2243be0SBarry Smith }
2701c5d6d63eSBarry Smith 
2702c5d6d63eSBarry Smith #undef __FUNCT__
270351dd7536SBarry Smith #define __FUNCT__ "MatMerge"
2704c5d6d63eSBarry Smith /*@C
270551dd7536SBarry Smith       MatMerge - Creates a single large PETSc matrix by concatinating sequential
270651dd7536SBarry Smith                  matrices from each processor
2707c5d6d63eSBarry Smith 
2708c5d6d63eSBarry Smith     Collective on MPI_Comm
2709c5d6d63eSBarry Smith 
2710c5d6d63eSBarry Smith    Input Parameters:
271151dd7536SBarry Smith +    comm - the communicators the parallel matrix will live on
2712d6bb3c2dSHong Zhang .    inmat - the input sequential matrices
27130e36024fSHong Zhang .    n - number of local columns (or PETSC_DECIDE)
2714d6bb3c2dSHong Zhang -    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
271551dd7536SBarry Smith 
271651dd7536SBarry Smith    Output Parameter:
271751dd7536SBarry Smith .    outmat - the parallel matrix generated
2718c5d6d63eSBarry Smith 
27197e25d530SSatish Balay     Level: advanced
27207e25d530SSatish Balay 
2721f08fae4eSHong Zhang    Notes: The number of columns of the matrix in EACH processor MUST be the same.
2722c5d6d63eSBarry Smith 
2723c5d6d63eSBarry Smith @*/
27240e36024fSHong Zhang PetscErrorCode MatMerge(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
2725c5d6d63eSBarry Smith {
2726dfbe8321SBarry Smith   PetscErrorCode    ierr;
2727b1d57f15SBarry Smith   PetscInt          m,N,i,rstart,nnz,I,*dnz,*onz;
2728b1d57f15SBarry Smith   const PetscInt    *indx;
2729b3cc6726SBarry Smith   const PetscScalar *values;
273051dd7536SBarry Smith   PetscMap          columnmap,rowmap;
2731c5d6d63eSBarry Smith 
2732c5d6d63eSBarry Smith   PetscFunctionBegin;
27330e36024fSHong Zhang     ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
27342257cef7SHong Zhang   /*
27352257cef7SHong Zhang   PetscMPIInt       rank;
27362257cef7SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
273755d1abb9SHong Zhang   ierr = PetscPrintf(PETSC_COMM_SELF," [%d] inmat m=%d, n=%d, N=%d\n",rank,m,n,N);
273855d1abb9SHong Zhang   */
2739d6bb3c2dSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
2740d6bb3c2dSHong Zhang     /* count nonzeros in each row, for diagonal and off diagonal portion of matrix */
27410e36024fSHong Zhang     if (n == PETSC_DECIDE){
2742d6bb3c2dSHong Zhang       ierr = PetscMapCreate(comm,&columnmap);CHKERRQ(ierr);
27430e36024fSHong Zhang       ierr = PetscMapSetSize(columnmap,N);CHKERRQ(ierr);
2744d6bb3c2dSHong Zhang       ierr = PetscMapSetType(columnmap,MAP_MPI);CHKERRQ(ierr);
2745d6bb3c2dSHong Zhang       ierr = PetscMapGetLocalSize(columnmap,&n);CHKERRQ(ierr);
2746d6bb3c2dSHong Zhang       ierr = PetscMapDestroy(columnmap);CHKERRQ(ierr);
27470e36024fSHong Zhang     }
2748d6bb3c2dSHong Zhang 
2749d6bb3c2dSHong Zhang     ierr = PetscMapCreate(comm,&rowmap);CHKERRQ(ierr);
2750d6bb3c2dSHong Zhang     ierr = PetscMapSetLocalSize(rowmap,m);CHKERRQ(ierr);
2751d6bb3c2dSHong Zhang     ierr = PetscMapSetType(rowmap,MAP_MPI);CHKERRQ(ierr);
2752d6bb3c2dSHong Zhang     ierr = PetscMapGetLocalRange(rowmap,&rstart,0);CHKERRQ(ierr);
2753d6bb3c2dSHong Zhang     ierr = PetscMapDestroy(rowmap);CHKERRQ(ierr);
2754d6bb3c2dSHong Zhang 
2755d6bb3c2dSHong Zhang     ierr = MatPreallocateInitialize(comm,m,n,dnz,onz);CHKERRQ(ierr);
2756d6bb3c2dSHong Zhang     for (i=0;i<m;i++) {
2757bcc1bcd5SHong Zhang       ierr = MatGetRow(inmat,i,&nnz,&indx,PETSC_NULL);CHKERRQ(ierr);
2758d6bb3c2dSHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,indx,dnz,onz);CHKERRQ(ierr);
2759bcc1bcd5SHong Zhang       ierr = MatRestoreRow(inmat,i,&nnz,&indx,PETSC_NULL);CHKERRQ(ierr);
2760d6bb3c2dSHong Zhang     }
2761d6bb3c2dSHong Zhang     /* This routine will ONLY return MPIAIJ type matrix */
2762d6bb3c2dSHong Zhang     ierr = MatCreate(comm,m,n,PETSC_DETERMINE,PETSC_DETERMINE,outmat);CHKERRQ(ierr);
2763d6bb3c2dSHong Zhang     ierr = MatSetType(*outmat,MATMPIAIJ);CHKERRQ(ierr);
2764d6bb3c2dSHong Zhang     ierr = MatMPIAIJSetPreallocation(*outmat,0,dnz,0,onz);CHKERRQ(ierr);
2765d6bb3c2dSHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
2766d6bb3c2dSHong Zhang 
2767d6bb3c2dSHong Zhang   } else if (scall == MAT_REUSE_MATRIX){
2768d6bb3c2dSHong Zhang     ierr = MatGetOwnershipRange(*outmat,&rstart,PETSC_NULL);CHKERRQ(ierr);
2769d6bb3c2dSHong Zhang   } else {
277077431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Invalid MatReuse %d",(int)scall);
2771d6bb3c2dSHong Zhang   }
2772d6bb3c2dSHong Zhang 
2773d6bb3c2dSHong Zhang   for (i=0;i<m;i++) {
2774d6bb3c2dSHong Zhang     ierr = MatGetRow(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
2775d6bb3c2dSHong Zhang     I    = i + rstart;
2776d6bb3c2dSHong Zhang     ierr = MatSetValues(*outmat,1,&I,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
2777d6bb3c2dSHong Zhang     ierr = MatRestoreRow(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
2778d6bb3c2dSHong Zhang   }
2779d6bb3c2dSHong Zhang   ierr = MatDestroy(inmat);CHKERRQ(ierr);
2780d6bb3c2dSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2781d6bb3c2dSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
278251dd7536SBarry Smith 
2783c5d6d63eSBarry Smith   PetscFunctionReturn(0);
2784c5d6d63eSBarry Smith }
2785c5d6d63eSBarry Smith 
2786c5d6d63eSBarry Smith #undef __FUNCT__
2787c5d6d63eSBarry Smith #define __FUNCT__ "MatFileSplit"
2788dfbe8321SBarry Smith PetscErrorCode MatFileSplit(Mat A,char *outfile)
2789c5d6d63eSBarry Smith {
2790dfbe8321SBarry Smith   PetscErrorCode    ierr;
279132dcc486SBarry Smith   PetscMPIInt       rank;
2792b1d57f15SBarry Smith   PetscInt          m,N,i,rstart,nnz;
2793de4209c5SBarry Smith   size_t            len;
2794b1d57f15SBarry Smith   const PetscInt    *indx;
2795c5d6d63eSBarry Smith   PetscViewer       out;
2796c5d6d63eSBarry Smith   char              *name;
2797c5d6d63eSBarry Smith   Mat               B;
2798b3cc6726SBarry Smith   const PetscScalar *values;
2799c5d6d63eSBarry Smith 
2800c5d6d63eSBarry Smith   PetscFunctionBegin;
2801c5d6d63eSBarry Smith   ierr = MatGetLocalSize(A,&m,0);CHKERRQ(ierr);
2802c5d6d63eSBarry Smith   ierr = MatGetSize(A,0,&N);CHKERRQ(ierr);
2803f204ca49SKris Buschelman   /* Should this be the type of the diagonal block of A? */
2804f204ca49SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,m,N,m,N,&B);CHKERRQ(ierr);
2805f204ca49SKris Buschelman   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2806f204ca49SKris Buschelman   ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr);
2807c5d6d63eSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,0);CHKERRQ(ierr);
2808c5d6d63eSBarry Smith   for (i=0;i<m;i++) {
2809c5d6d63eSBarry Smith     ierr = MatGetRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
2810c5d6d63eSBarry Smith     ierr = MatSetValues(B,1,&i,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
2811c5d6d63eSBarry Smith     ierr = MatRestoreRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
2812c5d6d63eSBarry Smith   }
2813c5d6d63eSBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2814c5d6d63eSBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2815c5d6d63eSBarry Smith 
2816c5d6d63eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2817c5d6d63eSBarry Smith   ierr = PetscStrlen(outfile,&len);CHKERRQ(ierr);
2818c5d6d63eSBarry Smith   ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr);
2819c5d6d63eSBarry Smith   sprintf(name,"%s.%d",outfile,rank);
282045f7d322SBarry Smith   ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_FILE_CREATE,&out);CHKERRQ(ierr);
2821c5d6d63eSBarry Smith   ierr = PetscFree(name);
2822c5d6d63eSBarry Smith   ierr = MatView(B,out);CHKERRQ(ierr);
2823c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(out);CHKERRQ(ierr);
2824c5d6d63eSBarry Smith   ierr = MatDestroy(B);CHKERRQ(ierr);
2825c5d6d63eSBarry Smith   PetscFunctionReturn(0);
2826c5d6d63eSBarry Smith }
2827e5f2cdd8SHong Zhang 
282851a7d1a8SHong Zhang EXTERN PetscErrorCode MatDestroy_MPIAIJ(Mat);
282951a7d1a8SHong Zhang #undef __FUNCT__
283051a7d1a8SHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_SeqsToMPI"
283151a7d1a8SHong Zhang PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(Mat A)
283251a7d1a8SHong Zhang {
283351a7d1a8SHong Zhang   PetscErrorCode       ierr;
2834671beff6SHong Zhang   Mat_Merge_SeqsToMPI  *merge;
2835671beff6SHong Zhang   PetscObjectContainer container;
283651a7d1a8SHong Zhang 
283751a7d1a8SHong Zhang   PetscFunctionBegin;
2838671beff6SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"MatMergeSeqsToMPI",(PetscObject *)&container);CHKERRQ(ierr);
2839671beff6SHong Zhang   if (container) {
28407f79fd58SMatthew Knepley     ierr = PetscObjectContainerGetPointer(container,(void **)&merge);CHKERRQ(ierr);
284151a7d1a8SHong Zhang     ierr = PetscFree(merge->id_r);CHKERRQ(ierr);
28423e06a4e6SHong Zhang     ierr = PetscFree(merge->len_s);CHKERRQ(ierr);
28433e06a4e6SHong Zhang     ierr = PetscFree(merge->len_r);CHKERRQ(ierr);
284451a7d1a8SHong Zhang     ierr = PetscFree(merge->bi);CHKERRQ(ierr);
284551a7d1a8SHong Zhang     ierr = PetscFree(merge->bj);CHKERRQ(ierr);
284602c68681SHong Zhang     ierr = PetscFree(merge->buf_ri);CHKERRQ(ierr);
284702c68681SHong Zhang     ierr = PetscFree(merge->buf_rj);CHKERRQ(ierr);
284851a7d1a8SHong Zhang     ierr = PetscMapDestroy(merge->rowmap);CHKERRQ(ierr);
2849de0260b3SHong Zhang     if (merge->coi){ierr = PetscFree(merge->coi);CHKERRQ(ierr);}
2850de0260b3SHong Zhang     if (merge->coj){ierr = PetscFree(merge->coj);CHKERRQ(ierr);}
2851de0260b3SHong Zhang     if (merge->owners_co){ierr = PetscFree(merge->owners_co);CHKERRQ(ierr);}
2852671beff6SHong Zhang 
2853671beff6SHong Zhang     ierr = PetscObjectContainerDestroy(container);CHKERRQ(ierr);
2854671beff6SHong Zhang     ierr = PetscObjectCompose((PetscObject)A,"MatMergeSeqsToMPI",0);CHKERRQ(ierr);
2855671beff6SHong Zhang   }
285651a7d1a8SHong Zhang   ierr = PetscFree(merge);CHKERRQ(ierr);
285751a7d1a8SHong Zhang 
285851a7d1a8SHong Zhang   ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr);
285951a7d1a8SHong Zhang   PetscFunctionReturn(0);
286051a7d1a8SHong Zhang }
286151a7d1a8SHong Zhang 
286258cb9c82SHong Zhang #include "src/mat/utils/freespace.h"
2863be0fcf8dSHong Zhang #include "petscbt.h"
2864e5f2cdd8SHong Zhang #undef __FUNCT__
2865e5f2cdd8SHong Zhang #define __FUNCT__ "MatMerge_SeqsToMPI"
2866e5f2cdd8SHong Zhang /*@C
2867f08fae4eSHong Zhang       MatMerge_SeqsToMPI - Creates a MPIAIJ matrix by adding sequential
2868e5f2cdd8SHong Zhang                  matrices from each processor
2869e5f2cdd8SHong Zhang 
2870e5f2cdd8SHong Zhang     Collective on MPI_Comm
2871e5f2cdd8SHong Zhang 
2872e5f2cdd8SHong Zhang    Input Parameters:
2873e5f2cdd8SHong Zhang +    comm - the communicators the parallel matrix will live on
2874f08fae4eSHong Zhang .    seqmat - the input sequential matrices
28750e36024fSHong Zhang .    m - number of local rows (or PETSC_DECIDE)
28760e36024fSHong Zhang .    n - number of local columns (or PETSC_DECIDE)
2877e5f2cdd8SHong Zhang -    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
2878e5f2cdd8SHong Zhang 
2879e5f2cdd8SHong Zhang    Output Parameter:
2880f08fae4eSHong Zhang .    mpimat - the parallel matrix generated
2881e5f2cdd8SHong Zhang 
2882e5f2cdd8SHong Zhang     Level: advanced
2883e5f2cdd8SHong Zhang 
2884affca5deSHong Zhang    Notes:
2885affca5deSHong Zhang      The dimensions of the sequential matrix in each processor MUST be the same.
2886affca5deSHong Zhang      The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
2887affca5deSHong Zhang      destroyed when mpimat is destroyed. Call PetscObjectQuery() to access seqmat.
2888e5f2cdd8SHong Zhang @*/
28893c2c1871SHong Zhang static PetscEvent logkey_seqstompinum = 0;
289055d1abb9SHong Zhang PetscErrorCode MatMerge_SeqsToMPINumeric(Mat seqmat,Mat mpimat)
289155d1abb9SHong Zhang {
289255d1abb9SHong Zhang   PetscErrorCode       ierr;
289355d1abb9SHong Zhang   MPI_Comm             comm=mpimat->comm;
289455d1abb9SHong Zhang   Mat_SeqAIJ           *a=(Mat_SeqAIJ*)seqmat->data;
2895b1d57f15SBarry Smith   PetscMPIInt          size,rank,taga,*len_s;
2896b1d57f15SBarry Smith   PetscInt             N=mpimat->N,i,j,*owners,*ai=a->i,*aj=a->j;
2897b1d57f15SBarry Smith   PetscInt             proc,m;
2898b1d57f15SBarry Smith   PetscInt             **buf_ri,**buf_rj;
2899b1d57f15SBarry Smith   PetscInt             k,anzi,*bj_i,*bi,*bj,arow,bnzi,nextaj;
2900b1d57f15SBarry Smith   PetscInt             nrows,**buf_ri_k,**nextrow,**nextai;
290155d1abb9SHong Zhang   MPI_Request          *s_waits,*r_waits;
290255d1abb9SHong Zhang   MPI_Status           *status;
2903ce805ee4SHong Zhang   MatScalar            *aa=a->a,**abuf_r,*ba_i;
290455d1abb9SHong Zhang   Mat_Merge_SeqsToMPI  *merge;
290555d1abb9SHong Zhang   PetscObjectContainer container;
290655d1abb9SHong Zhang 
290755d1abb9SHong Zhang   PetscFunctionBegin;
29083c2c1871SHong Zhang   if (!logkey_seqstompinum) {
29093c2c1871SHong Zhang     ierr = PetscLogEventRegister(&logkey_seqstompinum,"MatMerge_SeqsToMPINumeric",MAT_COOKIE);
29103c2c1871SHong Zhang   }
29113c2c1871SHong Zhang   ierr = PetscLogEventBegin(logkey_seqstompinum,seqmat,0,0,0);CHKERRQ(ierr);
29123c2c1871SHong Zhang 
291355d1abb9SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
291455d1abb9SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
291555d1abb9SHong Zhang 
291655d1abb9SHong Zhang   ierr = PetscObjectQuery((PetscObject)mpimat,"MatMergeSeqsToMPI",(PetscObject *)&container);CHKERRQ(ierr);
291755d1abb9SHong Zhang   if (container) {
291855d1abb9SHong Zhang     ierr  = PetscObjectContainerGetPointer(container,(void **)&merge);CHKERRQ(ierr);
291955d1abb9SHong Zhang   }
292055d1abb9SHong Zhang   bi     = merge->bi;
292155d1abb9SHong Zhang   bj     = merge->bj;
292255d1abb9SHong Zhang   buf_ri = merge->buf_ri;
292355d1abb9SHong Zhang   buf_rj = merge->buf_rj;
292455d1abb9SHong Zhang 
292555d1abb9SHong Zhang   ierr   = PetscMalloc(size*sizeof(MPI_Status),&status);CHKERRQ(ierr);
292655d1abb9SHong Zhang   ierr   = PetscMapGetGlobalRange(merge->rowmap,&owners);CHKERRQ(ierr);
292755d1abb9SHong Zhang   len_s  = merge->len_s;
292855d1abb9SHong Zhang 
292955d1abb9SHong Zhang   /* send and recv matrix values */
293055d1abb9SHong Zhang   /*-----------------------------*/
293155d1abb9SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)merge->rowmap,&taga);CHKERRQ(ierr);
293255d1abb9SHong Zhang   ierr = PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits);CHKERRQ(ierr);
293355d1abb9SHong Zhang 
293455d1abb9SHong Zhang   ierr = PetscMalloc((merge->nsend+1)*sizeof(MPI_Request),&s_waits);CHKERRQ(ierr);
293555d1abb9SHong Zhang   for (proc=0,k=0; proc<size; proc++){
293655d1abb9SHong Zhang     if (!len_s[proc]) continue;
293755d1abb9SHong Zhang     i = owners[proc];
293855d1abb9SHong Zhang     ierr = MPI_Isend(aa+ai[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k);CHKERRQ(ierr);
293955d1abb9SHong Zhang     k++;
294055d1abb9SHong Zhang   }
294155d1abb9SHong Zhang 
294255d1abb9SHong Zhang   ierr = MPI_Waitall(merge->nrecv,r_waits,status);CHKERRQ(ierr);
294355d1abb9SHong Zhang   ierr = MPI_Waitall(merge->nsend,s_waits,status);CHKERRQ(ierr);
294455d1abb9SHong Zhang   ierr = PetscFree(status);CHKERRQ(ierr);
294555d1abb9SHong Zhang 
294655d1abb9SHong Zhang   ierr = PetscFree(s_waits);CHKERRQ(ierr);
294755d1abb9SHong Zhang   ierr = PetscFree(r_waits);CHKERRQ(ierr);
294855d1abb9SHong Zhang 
294955d1abb9SHong Zhang   /* insert mat values of mpimat */
295055d1abb9SHong Zhang   /*----------------------------*/
295155d1abb9SHong Zhang   ierr = PetscMalloc(N*sizeof(MatScalar),&ba_i);CHKERRQ(ierr);
2952b1d57f15SBarry Smith   ierr = PetscMalloc((3*merge->nrecv+1)*sizeof(PetscInt**),&buf_ri_k);CHKERRQ(ierr);
295355d1abb9SHong Zhang   nextrow = buf_ri_k + merge->nrecv;
295455d1abb9SHong Zhang   nextai  = nextrow + merge->nrecv;
295555d1abb9SHong Zhang 
295655d1abb9SHong Zhang   for (k=0; k<merge->nrecv; k++){
295755d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
295855d1abb9SHong Zhang     nrows = *(buf_ri_k[k]);
295955d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
296055d1abb9SHong Zhang     nextai[k]   = buf_ri_k[k] + (nrows + 1);/* poins to the next i-structure of k-th recved i-structure  */
296155d1abb9SHong Zhang   }
296255d1abb9SHong Zhang 
296355d1abb9SHong Zhang   /* set values of ba */
296455d1abb9SHong Zhang   ierr = PetscMapGetLocalSize(merge->rowmap,&m);CHKERRQ(ierr);
296555d1abb9SHong Zhang   for (i=0; i<m; i++) {
296655d1abb9SHong Zhang     arow = owners[rank] + i;
296755d1abb9SHong Zhang     bj_i = bj+bi[i];  /* col indices of the i-th row of mpimat */
296855d1abb9SHong Zhang     bnzi = bi[i+1] - bi[i];
296955d1abb9SHong Zhang     ierr = PetscMemzero(ba_i,bnzi*sizeof(MatScalar));CHKERRQ(ierr);
297055d1abb9SHong Zhang 
297155d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
297255d1abb9SHong Zhang     anzi = ai[arow+1] - ai[arow];
297355d1abb9SHong Zhang     aj   = a->j + ai[arow];
297455d1abb9SHong Zhang     aa   = a->a + ai[arow];
297555d1abb9SHong Zhang     nextaj = 0;
297655d1abb9SHong Zhang     for (j=0; nextaj<anzi; j++){
297755d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]){ /* bcol == acol */
297855d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
297955d1abb9SHong Zhang       }
298055d1abb9SHong Zhang     }
298155d1abb9SHong Zhang 
298255d1abb9SHong Zhang     /* add received vals into ba */
298355d1abb9SHong Zhang     for (k=0; k<merge->nrecv; k++){ /* k-th received message */
298455d1abb9SHong Zhang       /* i-th row */
298555d1abb9SHong Zhang       if (i == *nextrow[k]) {
298655d1abb9SHong Zhang         anzi = *(nextai[k]+1) - *nextai[k];
298755d1abb9SHong Zhang         aj   = buf_rj[k] + *(nextai[k]);
298855d1abb9SHong Zhang         aa   = abuf_r[k] + *(nextai[k]);
298955d1abb9SHong Zhang         nextaj = 0;
299055d1abb9SHong Zhang         for (j=0; nextaj<anzi; j++){
299155d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]){ /* bcol == acol */
299255d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
299355d1abb9SHong Zhang           }
299455d1abb9SHong Zhang         }
299555d1abb9SHong Zhang         nextrow[k]++; nextai[k]++;
299655d1abb9SHong Zhang       }
299755d1abb9SHong Zhang     }
299855d1abb9SHong Zhang     ierr = MatSetValues(mpimat,1,&arow,bnzi,bj_i,ba_i,INSERT_VALUES);CHKERRQ(ierr);
299955d1abb9SHong Zhang   }
300055d1abb9SHong Zhang   ierr = MatAssemblyBegin(mpimat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
300155d1abb9SHong Zhang   ierr = MatAssemblyEnd(mpimat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
300255d1abb9SHong Zhang 
300355d1abb9SHong Zhang   ierr = PetscFree(abuf_r);CHKERRQ(ierr);
300455d1abb9SHong Zhang   ierr = PetscFree(ba_i);CHKERRQ(ierr);
300555d1abb9SHong Zhang   ierr = PetscFree(buf_ri_k);CHKERRQ(ierr);
30063c2c1871SHong Zhang   ierr = PetscLogEventEnd(logkey_seqstompinum,seqmat,0,0,0);CHKERRQ(ierr);
300755d1abb9SHong Zhang   PetscFunctionReturn(0);
300855d1abb9SHong Zhang }
30093c2c1871SHong Zhang static PetscEvent logkey_seqstompisym = 0;
301055d1abb9SHong Zhang PetscErrorCode MatMerge_SeqsToMPISymbolic(MPI_Comm comm,Mat seqmat,PetscInt m,PetscInt n,Mat *mpimat)
3011e5f2cdd8SHong Zhang {
3012f08fae4eSHong Zhang   PetscErrorCode       ierr;
301355a3bba9SHong Zhang   Mat                  B_mpi;
3014c2234fe3SHong Zhang   Mat_SeqAIJ           *a=(Mat_SeqAIJ*)seqmat->data;
3015b1d57f15SBarry Smith   PetscMPIInt          size,rank,tagi,tagj,*len_s,*len_si,*len_ri;
3016b1d57f15SBarry Smith   PetscInt             **buf_rj,**buf_ri,**buf_ri_k;
3017b1d57f15SBarry Smith   PetscInt             M=seqmat->m,N=seqmat->n,i,*owners,*ai=a->i,*aj=a->j;
3018b1d57f15SBarry Smith   PetscInt             len,proc,*dnz,*onz;
3019b1d57f15SBarry Smith   PetscInt             k,anzi,*bi,*bj,*lnk,nlnk,arow,bnzi,nspacedouble=0;
3020b1d57f15SBarry Smith   PetscInt             nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextai;
302155d1abb9SHong Zhang   MPI_Request          *si_waits,*sj_waits,*ri_waits,*rj_waits;
302258cb9c82SHong Zhang   MPI_Status           *status;
302358cb9c82SHong Zhang   FreeSpaceList        free_space=PETSC_NULL,current_space=PETSC_NULL;
3024be0fcf8dSHong Zhang   PetscBT              lnkbt;
302551a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI  *merge;
3026671beff6SHong Zhang   PetscObjectContainer container;
302702c68681SHong Zhang 
3028e5f2cdd8SHong Zhang   PetscFunctionBegin;
30293c2c1871SHong Zhang   if (!logkey_seqstompisym) {
30303c2c1871SHong Zhang     ierr = PetscLogEventRegister(&logkey_seqstompisym,"MatMerge_SeqsToMPISymbolic",MAT_COOKIE);
30313c2c1871SHong Zhang   }
30323c2c1871SHong Zhang   ierr = PetscLogEventBegin(logkey_seqstompisym,seqmat,0,0,0);CHKERRQ(ierr);
30333c2c1871SHong Zhang 
3034e5f2cdd8SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3035e5f2cdd8SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
303655d1abb9SHong Zhang 
303751a7d1a8SHong Zhang   ierr = PetscNew(Mat_Merge_SeqsToMPI,&merge);CHKERRQ(ierr);
3038c2234fe3SHong Zhang   ierr = PetscMalloc(size*sizeof(MPI_Status),&status);CHKERRQ(ierr);
3039e5f2cdd8SHong Zhang 
30406abd8857SHong Zhang   /* determine row ownership */
3041f08fae4eSHong Zhang   /*---------------------------------------------------------*/
304251a7d1a8SHong Zhang   ierr = PetscMapCreate(comm,&merge->rowmap);CHKERRQ(ierr);
30430e36024fSHong Zhang   if (m == PETSC_DECIDE) {
304451a7d1a8SHong Zhang     ierr = PetscMapSetSize(merge->rowmap,M);CHKERRQ(ierr);
30450e36024fSHong Zhang   } else {
30460e36024fSHong Zhang     ierr = PetscMapSetLocalSize(merge->rowmap,m);CHKERRQ(ierr);
30470e36024fSHong Zhang   }
304851a7d1a8SHong Zhang   ierr = PetscMapSetType(merge->rowmap,MAP_MPI);CHKERRQ(ierr);
3049b1d57f15SBarry Smith   ierr = PetscMalloc(size*sizeof(PetscMPIInt),&len_si);CHKERRQ(ierr);
3050b1d57f15SBarry Smith   ierr = PetscMalloc(size*sizeof(PetscMPIInt),&merge->len_s);CHKERRQ(ierr);
305155d1abb9SHong Zhang 
305255d1abb9SHong Zhang   if (m == PETSC_DECIDE) {ierr = PetscMapGetLocalSize(merge->rowmap,&m);CHKERRQ(ierr); }
305351a7d1a8SHong Zhang   ierr = PetscMapGetGlobalRange(merge->rowmap,&owners);CHKERRQ(ierr);
30546abd8857SHong Zhang 
30556abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
30566abd8857SHong Zhang   /*---------------------------------------------------------*/
30573e06a4e6SHong Zhang   len_s  = merge->len_s;
305851a7d1a8SHong Zhang 
30592257cef7SHong Zhang   len = 0;  /* length of buf_si[] */
3060c2234fe3SHong Zhang   merge->nsend = 0;
3061409913e3SHong Zhang   for (proc=0; proc<size; proc++){
30622257cef7SHong Zhang     len_si[proc] = 0;
30633e06a4e6SHong Zhang     if (proc == rank){
30646abd8857SHong Zhang       len_s[proc] = 0;
30653e06a4e6SHong Zhang     } else {
306602c68681SHong Zhang       len_si[proc] = owners[proc+1] - owners[proc] + 1;
30673e06a4e6SHong Zhang       len_s[proc] = ai[owners[proc+1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
30683e06a4e6SHong Zhang     }
30693e06a4e6SHong Zhang     if (len_s[proc]) {
3070c2234fe3SHong Zhang       merge->nsend++;
30712257cef7SHong Zhang       nrows = 0;
30722257cef7SHong Zhang       for (i=owners[proc]; i<owners[proc+1]; i++){
30732257cef7SHong Zhang         if (ai[i+1] > ai[i]) nrows++;
30742257cef7SHong Zhang       }
30752257cef7SHong Zhang       len_si[proc] = 2*(nrows+1);
30762257cef7SHong Zhang       len += len_si[proc];
3077409913e3SHong Zhang     }
307858cb9c82SHong Zhang   }
3079409913e3SHong Zhang 
30802257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
30812257cef7SHong Zhang   /*-------------------------------------------------------------------------*/
308251a7d1a8SHong Zhang   ierr = PetscGatherNumberOfMessages(comm,PETSC_NULL,len_s,&merge->nrecv);CHKERRQ(ierr);
308355d1abb9SHong Zhang   ierr = PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri);CHKERRQ(ierr);
3084671beff6SHong Zhang 
30853e06a4e6SHong Zhang   /* post the Irecv of j-structure */
30863e06a4e6SHong Zhang   /*-------------------------------*/
308702c68681SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)merge->rowmap,&tagj);CHKERRQ(ierr);
30883e06a4e6SHong Zhang   ierr = PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rj_waits);CHKERRQ(ierr);
308902c68681SHong Zhang 
30903e06a4e6SHong Zhang   /* post the Isend of j-structure */
3091affca5deSHong Zhang   /*--------------------------------*/
30922257cef7SHong Zhang   ierr = PetscMalloc((2*merge->nsend+1)*sizeof(MPI_Request),&si_waits);CHKERRQ(ierr);
309302c68681SHong Zhang   sj_waits = si_waits + merge->nsend;
30943e06a4e6SHong Zhang 
30952257cef7SHong Zhang   for (proc=0, k=0; proc<size; proc++){
3096409913e3SHong Zhang     if (!len_s[proc]) continue;
309702c68681SHong Zhang     i = owners[proc];
3098b1d57f15SBarry Smith     ierr = MPI_Isend(aj+ai[i],len_s[proc],MPIU_INT,proc,tagj,comm,sj_waits+k);CHKERRQ(ierr);
309951a7d1a8SHong Zhang     k++;
310051a7d1a8SHong Zhang   }
310151a7d1a8SHong Zhang 
31023e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
31033e06a4e6SHong Zhang   /*------------------------------------------------*/
310402c68681SHong Zhang   ierr = MPI_Waitall(merge->nrecv,rj_waits,status);CHKERRQ(ierr);
310502c68681SHong Zhang   ierr = MPI_Waitall(merge->nsend,sj_waits,status);CHKERRQ(ierr);
310602c68681SHong Zhang 
310702c68681SHong Zhang   /* send and recv i-structure */
310802c68681SHong Zhang   /*---------------------------*/
310902c68681SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)merge->rowmap,&tagi);CHKERRQ(ierr);
311002c68681SHong Zhang   ierr = PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&ri_waits);CHKERRQ(ierr);
311102c68681SHong Zhang 
3112b1d57f15SBarry Smith   ierr = PetscMalloc((len+1)*sizeof(PetscInt),&buf_s);CHKERRQ(ierr);
31133e06a4e6SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
31142257cef7SHong Zhang   for (proc=0,k=0; proc<size; proc++){
311502c68681SHong Zhang     if (!len_s[proc]) continue;
31163e06a4e6SHong Zhang     /* form outgoing message for i-structure:
31173e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
31183e06a4e6SHong Zhang                [1:nrows]:           row index (global)
31193e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
31203e06a4e6SHong Zhang     */
31213e06a4e6SHong Zhang     /*-------------------------------------------*/
31222257cef7SHong Zhang     nrows = len_si[proc]/2 - 1;
31233e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows+1;
31243e06a4e6SHong Zhang     buf_si[0]   = nrows;
31253e06a4e6SHong Zhang     buf_si_i[0] = 0;
31263e06a4e6SHong Zhang     nrows = 0;
31273e06a4e6SHong Zhang     for (i=owners[proc]; i<owners[proc+1]; i++){
31283e06a4e6SHong Zhang       anzi = ai[i+1] - ai[i];
31293e06a4e6SHong Zhang       if (anzi) {
31303e06a4e6SHong Zhang         buf_si_i[nrows+1] = buf_si_i[nrows] + anzi; /* i-structure */
31313e06a4e6SHong Zhang         buf_si[nrows+1] = i-owners[proc]; /* local row index */
31323e06a4e6SHong Zhang         nrows++;
31333e06a4e6SHong Zhang       }
31343e06a4e6SHong Zhang     }
3135b1d57f15SBarry Smith     ierr = MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,si_waits+k);CHKERRQ(ierr);
313602c68681SHong Zhang     k++;
31372257cef7SHong Zhang     buf_si += len_si[proc];
313802c68681SHong Zhang   }
31392257cef7SHong Zhang 
314002c68681SHong Zhang   ierr = MPI_Waitall(merge->nrecv,ri_waits,status);CHKERRQ(ierr);
314102c68681SHong Zhang   ierr = MPI_Waitall(merge->nsend,si_waits,status);CHKERRQ(ierr);
314202c68681SHong Zhang 
314377431f27SBarry Smith   ierr = PetscLogInfo((PetscObject)(seqmat),"MatMerge_SeqsToMPI: nsend: %D, nrecv: %D\n",merge->nsend,merge->nrecv);CHKERRQ(ierr);
31443e06a4e6SHong Zhang   for (i=0; i<merge->nrecv; i++){
314577431f27SBarry Smith     ierr = PetscLogInfo((PetscObject)(seqmat),"MatMerge_SeqsToMPI:   recv len_ri=%D, len_rj=%D from [%D]\n",len_ri[i],merge->len_r[i],merge->id_r[i]);CHKERRQ(ierr);
31463e06a4e6SHong Zhang   }
31473e06a4e6SHong Zhang 
31483e06a4e6SHong Zhang   ierr = PetscFree(len_si);CHKERRQ(ierr);
314902c68681SHong Zhang   ierr = PetscFree(len_ri);CHKERRQ(ierr);
315002c68681SHong Zhang   ierr = PetscFree(rj_waits);CHKERRQ(ierr);
31513e06a4e6SHong Zhang   ierr = PetscFree(si_waits);CHKERRQ(ierr);
31522257cef7SHong Zhang   ierr = PetscFree(ri_waits);CHKERRQ(ierr);
31533e06a4e6SHong Zhang   ierr = PetscFree(buf_s);CHKERRQ(ierr);
3154bcc1bcd5SHong Zhang   ierr = PetscFree(status);CHKERRQ(ierr);
315558cb9c82SHong Zhang 
3156bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
3157bcc1bcd5SHong Zhang   /*----------------------------------------------*/
315858cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
3159b1d57f15SBarry Smith   ierr = PetscMalloc((m+1)*sizeof(PetscInt),&bi);CHKERRQ(ierr);
316058cb9c82SHong Zhang   bi[0] = 0;
316158cb9c82SHong Zhang 
3162be0fcf8dSHong Zhang   /* create and initialize a linked list */
3163be0fcf8dSHong Zhang   nlnk = N+1;
3164be0fcf8dSHong Zhang   ierr = PetscLLCreate(N,N,nlnk,lnk,lnkbt);CHKERRQ(ierr);
316558cb9c82SHong Zhang 
3166bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
316758cb9c82SHong Zhang   len = 0;
3168bcc1bcd5SHong Zhang   len  = ai[owners[rank+1]] - ai[owners[rank]];
3169b1d57f15SBarry Smith   ierr = GetMoreSpace((PetscInt)(2*len+1),&free_space);CHKERRQ(ierr);
317058cb9c82SHong Zhang   current_space = free_space;
317158cb9c82SHong Zhang 
3172bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
3173b1d57f15SBarry Smith   ierr = PetscMalloc((3*merge->nrecv+1)*sizeof(PetscInt**),&buf_ri_k);CHKERRQ(ierr);
31743e06a4e6SHong Zhang   nextrow = buf_ri_k + merge->nrecv;
31753e06a4e6SHong Zhang   nextai  = nextrow + merge->nrecv;
31763e06a4e6SHong Zhang   for (k=0; k<merge->nrecv; k++){
31772257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
31783e06a4e6SHong Zhang     nrows = *buf_ri_k[k];
31793e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
31802257cef7SHong Zhang     nextai[k]   = buf_ri_k[k] + (nrows + 1);/* poins to the next i-structure of k-th recved i-structure  */
31813e06a4e6SHong Zhang   }
31822257cef7SHong Zhang 
3183bcc1bcd5SHong Zhang   ierr = MatPreallocateInitialize(comm,m,n,dnz,onz);CHKERRQ(ierr);
3184bcc1bcd5SHong Zhang   len = 0;
318558cb9c82SHong Zhang   for (i=0;i<m;i++) {
318658cb9c82SHong Zhang     bnzi   = 0;
318758cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
318858cb9c82SHong Zhang     arow   = owners[rank] + i;
318958cb9c82SHong Zhang     anzi   = ai[arow+1] - ai[arow];
319058cb9c82SHong Zhang     aj     = a->j + ai[arow];
3191be0fcf8dSHong Zhang     ierr = PetscLLAdd(anzi,aj,N,nlnk,lnk,lnkbt);CHKERRQ(ierr);
319258cb9c82SHong Zhang     bnzi += nlnk;
319358cb9c82SHong Zhang     /* add received col data into lnk */
319451a7d1a8SHong Zhang     for (k=0; k<merge->nrecv; k++){ /* k-th received message */
319555d1abb9SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
31963e06a4e6SHong Zhang         anzi = *(nextai[k]+1) - *nextai[k];
31973e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
31983e06a4e6SHong Zhang         ierr = PetscLLAdd(anzi,aj,N,nlnk,lnk,lnkbt);CHKERRQ(ierr);
31993e06a4e6SHong Zhang         bnzi += nlnk;
32003e06a4e6SHong Zhang         nextrow[k]++; nextai[k]++;
32013e06a4e6SHong Zhang       }
320258cb9c82SHong Zhang     }
3203bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi;  /* =max(bnzi) */
320458cb9c82SHong Zhang 
320558cb9c82SHong Zhang     /* if free space is not available, make more free space */
320658cb9c82SHong Zhang     if (current_space->local_remaining<bnzi) {
320758cb9c82SHong Zhang       ierr = GetMoreSpace(current_space->total_array_size,&current_space);CHKERRQ(ierr);
320858cb9c82SHong Zhang       nspacedouble++;
320958cb9c82SHong Zhang     }
321058cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
3211be0fcf8dSHong Zhang     ierr = PetscLLClean(N,N,bnzi,lnk,current_space->array,lnkbt);CHKERRQ(ierr);
3212bcc1bcd5SHong Zhang     ierr = MatPreallocateSet(i+owners[rank],bnzi,current_space->array,dnz,onz);CHKERRQ(ierr);
3213bcc1bcd5SHong Zhang 
321458cb9c82SHong Zhang     current_space->array           += bnzi;
321558cb9c82SHong Zhang     current_space->local_used      += bnzi;
321658cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
321758cb9c82SHong Zhang 
321858cb9c82SHong Zhang     bi[i+1] = bi[i] + bnzi;
321958cb9c82SHong Zhang   }
3220bcc1bcd5SHong Zhang 
3221bcc1bcd5SHong Zhang   ierr = PetscFree(buf_ri_k);CHKERRQ(ierr);
3222bcc1bcd5SHong Zhang 
3223b1d57f15SBarry Smith   ierr = PetscMalloc((bi[m]+1)*sizeof(PetscInt),&bj);CHKERRQ(ierr);
322458cb9c82SHong Zhang   ierr = MakeSpaceContiguous(&free_space,bj);CHKERRQ(ierr);
3225be0fcf8dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
3226409913e3SHong Zhang 
3227bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
3228bcc1bcd5SHong Zhang   /*---------------------------------------*/
322954b84b50SHong Zhang   if (n==PETSC_DECIDE) {
323054b84b50SHong Zhang     ierr = MatCreate(comm,m,n,PETSC_DETERMINE,N,&B_mpi);CHKERRQ(ierr);
323154b84b50SHong Zhang   } else {
3232bcc1bcd5SHong Zhang     ierr = MatCreate(comm,m,n,PETSC_DETERMINE,PETSC_DETERMINE,&B_mpi);CHKERRQ(ierr);
323354b84b50SHong Zhang   }
3234bcc1bcd5SHong Zhang   ierr = MatSetType(B_mpi,MATMPIAIJ);CHKERRQ(ierr);
3235bcc1bcd5SHong Zhang   ierr = MatMPIAIJSetPreallocation(B_mpi,0,dnz,0,onz);CHKERRQ(ierr);
3236bcc1bcd5SHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
323758cb9c82SHong Zhang 
32386abd8857SHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatMerge_SeqsToMPINumeric() */
32396abd8857SHong Zhang   B_mpi->assembled     = PETSC_FALSE;
3240affca5deSHong Zhang   B_mpi->ops->destroy  = MatDestroy_MPIAIJ_SeqsToMPI;
3241affca5deSHong Zhang   merge->bi            = bi;
3242affca5deSHong Zhang   merge->bj            = bj;
324302c68681SHong Zhang   merge->buf_ri        = buf_ri;
324402c68681SHong Zhang   merge->buf_rj        = buf_rj;
3245de0260b3SHong Zhang   merge->coi           = PETSC_NULL;
3246de0260b3SHong Zhang   merge->coj           = PETSC_NULL;
3247de0260b3SHong Zhang   merge->owners_co     = PETSC_NULL;
3248affca5deSHong Zhang 
3249affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
3250affca5deSHong Zhang   ierr = PetscObjectContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
3251affca5deSHong Zhang   ierr = PetscObjectContainerSetPointer(container,merge);CHKERRQ(ierr);
3252affca5deSHong Zhang   ierr = PetscObjectCompose((PetscObject)B_mpi,"MatMergeSeqsToMPI",(PetscObject)container);CHKERRQ(ierr);
3253affca5deSHong Zhang   *mpimat = B_mpi;
32543c2c1871SHong Zhang   ierr = PetscLogEventEnd(logkey_seqstompisym,seqmat,0,0,0);CHKERRQ(ierr);
3255e5f2cdd8SHong Zhang   PetscFunctionReturn(0);
3256e5f2cdd8SHong Zhang }
325725616d81SHong Zhang 
3258e462e02cSHong Zhang static PetscEvent logkey_seqstompi = 0;
325955d1abb9SHong Zhang PetscErrorCode MatMerge_SeqsToMPI(MPI_Comm comm,Mat seqmat,PetscInt m,PetscInt n,MatReuse scall,Mat *mpimat)
326055d1abb9SHong Zhang {
326155d1abb9SHong Zhang   PetscErrorCode   ierr;
326255d1abb9SHong Zhang 
326355d1abb9SHong Zhang   PetscFunctionBegin;
3264e462e02cSHong Zhang   if (!logkey_seqstompi) {
3265e462e02cSHong Zhang     ierr = PetscLogEventRegister(&logkey_seqstompi,"MatMerge_SeqsToMPI",MAT_COOKIE);
3266e462e02cSHong Zhang   }
3267e462e02cSHong Zhang   ierr = PetscLogEventBegin(logkey_seqstompi,seqmat,0,0,0);CHKERRQ(ierr);
326855d1abb9SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
326955d1abb9SHong Zhang     ierr = MatMerge_SeqsToMPISymbolic(comm,seqmat,m,n,mpimat);CHKERRQ(ierr);
327055d1abb9SHong Zhang   }
327155d1abb9SHong Zhang   ierr = MatMerge_SeqsToMPINumeric(seqmat,*mpimat);CHKERRQ(ierr);
3272e462e02cSHong Zhang   ierr = PetscLogEventEnd(logkey_seqstompi,seqmat,0,0,0);CHKERRQ(ierr);
327355d1abb9SHong Zhang   PetscFunctionReturn(0);
327455d1abb9SHong Zhang }
3275a61c8c0fSHong Zhang static PetscEvent logkey_getlocalmat = 0;
327625616d81SHong Zhang #undef __FUNCT__
327725616d81SHong Zhang #define __FUNCT__ "MatGetLocalMat"
327825616d81SHong Zhang /*@C
327932fba14fSHong Zhang      MatGetLocalMat - Creates a SeqAIJ matrix by taking all its local rows
328025616d81SHong Zhang 
328132fba14fSHong Zhang     Not Collective
328225616d81SHong Zhang 
328325616d81SHong Zhang    Input Parameters:
328425616d81SHong Zhang +    A - the matrix
328525616d81SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
328625616d81SHong Zhang 
328725616d81SHong Zhang    Output Parameter:
328825616d81SHong Zhang .    A_loc - the local sequential matrix generated
328925616d81SHong Zhang 
329025616d81SHong Zhang     Level: developer
329125616d81SHong Zhang 
329225616d81SHong Zhang @*/
329332fba14fSHong Zhang PetscErrorCode MatGetLocalMat(Mat A,MatReuse scall,Mat *A_loc)
329425616d81SHong Zhang {
329525616d81SHong Zhang   PetscErrorCode  ierr;
329601b7ae99SHong Zhang   Mat_MPIAIJ      *mpimat=(Mat_MPIAIJ*)A->data;
329701b7ae99SHong Zhang   Mat_SeqAIJ      *mat,*a=(Mat_SeqAIJ*)(mpimat->A)->data,*b=(Mat_SeqAIJ*)(mpimat->B)->data;
329801b7ae99SHong Zhang   PetscInt        *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*cmap=mpimat->garray;
3299dea91ad1SHong Zhang   PetscScalar     *aa=a->a,*ba=b->a,*ca;
3300ecc9b87dSHong Zhang   PetscInt        am=A->m,i,j,k,cstart=mpimat->cstart;
33015a7d977cSHong Zhang   PetscInt        *ci,*cj,col,ncols_d,ncols_o,jo;
330225616d81SHong Zhang 
330325616d81SHong Zhang   PetscFunctionBegin;
3304e462e02cSHong Zhang   if (!logkey_getlocalmat) {
3305e462e02cSHong Zhang     ierr = PetscLogEventRegister(&logkey_getlocalmat,"MatGetLocalMat",MAT_COOKIE);
3306e462e02cSHong Zhang   }
3307e462e02cSHong Zhang   ierr = PetscLogEventBegin(logkey_getlocalmat,A,0,0,0);CHKERRQ(ierr);
330801b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3309dea91ad1SHong Zhang     ierr = PetscMalloc((1+am)*sizeof(PetscInt),&ci);CHKERRQ(ierr);
3310dea91ad1SHong Zhang     ci[0] = 0;
331101b7ae99SHong Zhang     for (i=0; i<am; i++){
3312dea91ad1SHong Zhang       ci[i+1] = ci[i] + (ai[i+1] - ai[i]) + (bi[i+1] - bi[i]);
331301b7ae99SHong Zhang     }
3314dea91ad1SHong Zhang     ierr = PetscMalloc((1+ci[am])*sizeof(PetscInt),&cj);CHKERRQ(ierr);
3315dea91ad1SHong Zhang     ierr = PetscMalloc((1+ci[am])*sizeof(PetscScalar),&ca);CHKERRQ(ierr);
3316dea91ad1SHong Zhang     k = 0;
331701b7ae99SHong Zhang     for (i=0; i<am; i++) {
33185a7d977cSHong Zhang       ncols_o = bi[i+1] - bi[i];
33195a7d977cSHong Zhang       ncols_d = ai[i+1] - ai[i];
332001b7ae99SHong Zhang       /* off-diagonal portion of A */
33215a7d977cSHong Zhang       for (jo=0; jo<ncols_o; jo++) {
33225a7d977cSHong Zhang         col = cmap[*bj];
33235a7d977cSHong Zhang         if (col >= cstart) break;
33245a7d977cSHong Zhang         cj[k]   = col; bj++;
33255a7d977cSHong Zhang         ca[k++] = *ba++;
33265a7d977cSHong Zhang       }
33275a7d977cSHong Zhang       /* diagonal portion of A */
33285a7d977cSHong Zhang       for (j=0; j<ncols_d; j++) {
33295a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
33305a7d977cSHong Zhang         ca[k++] = *aa++;
33315a7d977cSHong Zhang       }
33325a7d977cSHong Zhang       /* off-diagonal portion of A */
33335a7d977cSHong Zhang       for (j=jo; j<ncols_o; j++) {
33345a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
33355a7d977cSHong Zhang         ca[k++] = *ba++;
33365a7d977cSHong Zhang       }
333725616d81SHong Zhang     }
3338dea91ad1SHong Zhang     /* put together the new matrix */
3339dea91ad1SHong Zhang     ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,am,A->N,ci,cj,ca,A_loc);CHKERRQ(ierr);
3340dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
3341dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
3342dea91ad1SHong Zhang     mat = (Mat_SeqAIJ*)(*A_loc)->data;
3343dea91ad1SHong Zhang     mat->freedata = PETSC_TRUE;
3344dea91ad1SHong Zhang     mat->nonew    = 0;
33455a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX){
33465a7d977cSHong Zhang     mat=(Mat_SeqAIJ*)(*A_loc)->data;
33475a7d977cSHong Zhang     ci = mat->i; cj = mat->j; ca = mat->a;
33485a7d977cSHong Zhang     for (i=0; i<am; i++) {
33495a7d977cSHong Zhang       /* off-diagonal portion of A */
33505a7d977cSHong Zhang       ncols_o = bi[i+1] - bi[i];
33515a7d977cSHong Zhang       for (jo=0; jo<ncols_o; jo++) {
33525a7d977cSHong Zhang         col = cmap[*bj];
33535a7d977cSHong Zhang         if (col >= cstart) break;
3354f33d1a9aSHong Zhang         *ca++ = *ba++; bj++;
33555a7d977cSHong Zhang       }
33565a7d977cSHong Zhang       /* diagonal portion of A */
3357ecc9b87dSHong Zhang       ncols_d = ai[i+1] - ai[i];
3358ecc9b87dSHong Zhang       for (j=0; j<ncols_d; j++) *ca++ = *aa++;
33595a7d977cSHong Zhang       /* off-diagonal portion of A */
3360f33d1a9aSHong Zhang       for (j=jo; j<ncols_o; j++) {
3361f33d1a9aSHong Zhang         *ca++ = *ba++; bj++;
3362f33d1a9aSHong Zhang       }
33635a7d977cSHong Zhang     }
33645a7d977cSHong Zhang   } else {
33655a7d977cSHong Zhang     SETERRQ1(PETSC_ERR_ARG_WRONG,"Invalid MatReuse %d",(int)scall);
336625616d81SHong Zhang   }
336701b7ae99SHong Zhang 
3368e462e02cSHong Zhang   ierr = PetscLogEventEnd(logkey_getlocalmat,A,0,0,0);CHKERRQ(ierr);
336925616d81SHong Zhang   PetscFunctionReturn(0);
337025616d81SHong Zhang }
337125616d81SHong Zhang 
337232fba14fSHong Zhang static PetscEvent logkey_getlocalmatcondensed = 0;
337332fba14fSHong Zhang #undef __FUNCT__
337432fba14fSHong Zhang #define __FUNCT__ "MatGetLocalMatCondensed"
337532fba14fSHong Zhang /*@C
337632fba14fSHong Zhang      MatGetLocalMatCondensed - Creates a SeqAIJ matrix by taking all its local rows and NON-ZERO columns
337732fba14fSHong Zhang 
337832fba14fSHong Zhang     Not Collective
337932fba14fSHong Zhang 
338032fba14fSHong Zhang    Input Parameters:
338132fba14fSHong Zhang +    A - the matrix
338232fba14fSHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
338332fba14fSHong Zhang -    row, col - index sets of rows and columns to extract (or PETSC_NULL)
338432fba14fSHong Zhang 
338532fba14fSHong Zhang    Output Parameter:
338632fba14fSHong Zhang .    A_loc - the local sequential matrix generated
338732fba14fSHong Zhang 
338832fba14fSHong Zhang     Level: developer
338932fba14fSHong Zhang 
339032fba14fSHong Zhang @*/
339132fba14fSHong Zhang PetscErrorCode MatGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc)
339232fba14fSHong Zhang {
339332fba14fSHong Zhang   Mat_MPIAIJ        *a=(Mat_MPIAIJ*)A->data;
339432fba14fSHong Zhang   PetscErrorCode    ierr;
339532fba14fSHong Zhang   PetscInt          i,start,end,ncols,nzA,nzB,*cmap,imark,*idx;
339632fba14fSHong Zhang   IS                isrowa,iscola;
339732fba14fSHong Zhang   Mat               *aloc;
339832fba14fSHong Zhang 
339932fba14fSHong Zhang   PetscFunctionBegin;
340032fba14fSHong Zhang   if (!logkey_getlocalmatcondensed) {
340132fba14fSHong Zhang     ierr = PetscLogEventRegister(&logkey_getlocalmatcondensed,"MatGetLocalMatCondensed",MAT_COOKIE);
340232fba14fSHong Zhang   }
340332fba14fSHong Zhang   ierr = PetscLogEventBegin(logkey_getlocalmatcondensed,A,0,0,0);CHKERRQ(ierr);
340432fba14fSHong Zhang   if (!row){
340532fba14fSHong Zhang     start = a->rstart; end = a->rend;
340632fba14fSHong Zhang     ierr = ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa);CHKERRQ(ierr);
340732fba14fSHong Zhang   } else {
340832fba14fSHong Zhang     isrowa = *row;
340932fba14fSHong Zhang   }
341032fba14fSHong Zhang   if (!col){
341132fba14fSHong Zhang     start = a->cstart;
341232fba14fSHong Zhang     cmap  = a->garray;
341332fba14fSHong Zhang     nzA   = a->A->n;
341432fba14fSHong Zhang     nzB   = a->B->n;
341532fba14fSHong Zhang     ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
341632fba14fSHong Zhang     ncols = 0;
341732fba14fSHong Zhang     for (i=0; i<nzB; i++) {
341832fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
341932fba14fSHong Zhang       else break;
342032fba14fSHong Zhang     }
342132fba14fSHong Zhang     imark = i;
342232fba14fSHong Zhang     for (i=0; i<nzA; i++) idx[ncols++] = start + i;
342332fba14fSHong Zhang     for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i];
342432fba14fSHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,&iscola);CHKERRQ(ierr);
342532fba14fSHong Zhang     ierr = PetscFree(idx);CHKERRQ(ierr);
342632fba14fSHong Zhang   } else {
342732fba14fSHong Zhang     iscola = *col;
342832fba14fSHong Zhang   }
342932fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX){
343032fba14fSHong Zhang     ierr = PetscMalloc(sizeof(Mat),&aloc);CHKERRQ(ierr);
343132fba14fSHong Zhang     aloc[0] = *A_loc;
343232fba14fSHong Zhang   }
343332fba14fSHong Zhang   ierr = MatGetSubMatrices(A,1,&isrowa,&iscola,scall,&aloc);CHKERRQ(ierr);
343432fba14fSHong Zhang   *A_loc = aloc[0];
343532fba14fSHong Zhang   ierr = PetscFree(aloc);CHKERRQ(ierr);
343632fba14fSHong Zhang   if (!row){
343732fba14fSHong Zhang     ierr = ISDestroy(isrowa);CHKERRQ(ierr);
343832fba14fSHong Zhang   }
343932fba14fSHong Zhang   if (!col){
344032fba14fSHong Zhang     ierr = ISDestroy(iscola);CHKERRQ(ierr);
344132fba14fSHong Zhang   }
344232fba14fSHong Zhang   ierr = PetscLogEventEnd(logkey_getlocalmatcondensed,A,0,0,0);CHKERRQ(ierr);
344332fba14fSHong Zhang   PetscFunctionReturn(0);
344432fba14fSHong Zhang }
344532fba14fSHong Zhang 
3446a61c8c0fSHong Zhang static PetscEvent logkey_GetBrowsOfAcols = 0;
344725616d81SHong Zhang #undef __FUNCT__
344825616d81SHong Zhang #define __FUNCT__ "MatGetBrowsOfAcols"
344925616d81SHong Zhang /*@C
345032fba14fSHong Zhang     MatGetBrowsOfAcols - Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
345125616d81SHong Zhang 
345225616d81SHong Zhang     Collective on Mat
345325616d81SHong Zhang 
345425616d81SHong Zhang    Input Parameters:
3455e240928fSHong Zhang +    A,B - the matrices in mpiaij format
345625616d81SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
345725616d81SHong Zhang -    rowb, colb - index sets of rows and columns of B to extract (or PETSC_NULL)
345825616d81SHong Zhang 
345925616d81SHong Zhang    Output Parameter:
346025616d81SHong Zhang +    rowb, colb - index sets of rows and columns of B to extract
346125616d81SHong Zhang .    brstart - row index of B_seq from which next B->m rows are taken from B's local rows
346225616d81SHong Zhang -    B_seq - the sequential matrix generated
346325616d81SHong Zhang 
346425616d81SHong Zhang     Level: developer
346525616d81SHong Zhang 
346625616d81SHong Zhang @*/
346725616d81SHong Zhang PetscErrorCode MatGetBrowsOfAcols(Mat A,Mat B,MatReuse scall,IS *rowb,IS *colb,PetscInt *brstart,Mat *B_seq)
346825616d81SHong Zhang {
346925616d81SHong Zhang   Mat_MPIAIJ        *a=(Mat_MPIAIJ*)A->data,*b=(Mat_MPIAIJ*)B->data;
347025616d81SHong Zhang   PetscErrorCode    ierr;
3471b1d57f15SBarry Smith   PetscInt          *idx,i,start,ncols,nzA,nzB,*cmap,imark;
347225616d81SHong Zhang   IS                isrowb,iscolb;
347325616d81SHong Zhang   Mat               *bseq;
347425616d81SHong Zhang 
347525616d81SHong Zhang   PetscFunctionBegin;
347625616d81SHong Zhang   if (a->cstart != b->rstart || a->cend != b->rend){
347777431f27SBarry Smith     SETERRQ4(PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",a->cstart,a->cend,b->rstart,b->rend);
347825616d81SHong Zhang   }
3479e462e02cSHong Zhang   if (!logkey_GetBrowsOfAcols) {
3480e462e02cSHong Zhang     ierr = PetscLogEventRegister(&logkey_GetBrowsOfAcols,"MatGetBrowsOfAcols",MAT_COOKIE);
3481e462e02cSHong Zhang   }
3482e462e02cSHong Zhang   ierr = PetscLogEventBegin(logkey_GetBrowsOfAcols,A,B,0,0);CHKERRQ(ierr);
348325616d81SHong Zhang 
348425616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
348525616d81SHong Zhang     start = a->cstart;
348625616d81SHong Zhang     cmap  = a->garray;
348725616d81SHong Zhang     nzA   = a->A->n;
348825616d81SHong Zhang     nzB   = a->B->n;
3489b1d57f15SBarry Smith     ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
349025616d81SHong Zhang     ncols = 0;
34910390132cSHong Zhang     for (i=0; i<nzB; i++) {  /* row < local row index */
349225616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
349325616d81SHong Zhang       else break;
349425616d81SHong Zhang     }
349525616d81SHong Zhang     imark = i;
34960390132cSHong Zhang     for (i=0; i<nzA; i++) idx[ncols++] = start + i;  /* local rows */
34970390132cSHong Zhang     for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
349825616d81SHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,&isrowb);CHKERRQ(ierr);
349925616d81SHong Zhang     ierr = PetscFree(idx);CHKERRQ(ierr);
350025616d81SHong Zhang     *brstart = imark;
350125616d81SHong Zhang     ierr = ISCreateStride(PETSC_COMM_SELF,B->N,0,1,&iscolb);CHKERRQ(ierr);
350225616d81SHong Zhang   } else {
350325616d81SHong Zhang     if (!rowb || !colb) SETERRQ(PETSC_ERR_SUP,"IS rowb and colb must be provided for MAT_REUSE_MATRIX");
350425616d81SHong Zhang     isrowb = *rowb; iscolb = *colb;
350525616d81SHong Zhang     ierr = PetscMalloc(sizeof(Mat),&bseq);CHKERRQ(ierr);
350625616d81SHong Zhang     bseq[0] = *B_seq;
350725616d81SHong Zhang   }
350825616d81SHong Zhang   ierr = MatGetSubMatrices(B,1,&isrowb,&iscolb,scall,&bseq);CHKERRQ(ierr);
350925616d81SHong Zhang   *B_seq = bseq[0];
351025616d81SHong Zhang   ierr = PetscFree(bseq);CHKERRQ(ierr);
351125616d81SHong Zhang   if (!rowb){
351225616d81SHong Zhang     ierr = ISDestroy(isrowb);CHKERRQ(ierr);
351325616d81SHong Zhang   } else {
351425616d81SHong Zhang     *rowb = isrowb;
351525616d81SHong Zhang   }
351625616d81SHong Zhang   if (!colb){
351725616d81SHong Zhang     ierr = ISDestroy(iscolb);CHKERRQ(ierr);
351825616d81SHong Zhang   } else {
351925616d81SHong Zhang     *colb = iscolb;
352025616d81SHong Zhang   }
3521e462e02cSHong Zhang   ierr = PetscLogEventEnd(logkey_GetBrowsOfAcols,A,B,0,0);CHKERRQ(ierr);
352225616d81SHong Zhang   PetscFunctionReturn(0);
352325616d81SHong Zhang }
3524429d309bSHong Zhang 
3525a61c8c0fSHong Zhang static PetscEvent logkey_GetBrowsOfAocols = 0;
3526a61c8c0fSHong Zhang #undef __FUNCT__
3527a61c8c0fSHong Zhang #define __FUNCT__ "MatGetBrowsOfAoCols"
3528429d309bSHong Zhang /*@C
3529429d309bSHong Zhang     MatGetBrowsOfAoCols - Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns
353001b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
3531429d309bSHong Zhang 
3532429d309bSHong Zhang     Collective on Mat
3533429d309bSHong Zhang 
3534429d309bSHong Zhang    Input Parameters:
3535429d309bSHong Zhang +    A,B - the matrices in mpiaij format
353687025532SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
353787025532SHong Zhang .    startsj - starting point in B's sending and receiving j-arrays, saved for MAT_REUSE (or PETSC_NULL)
353887025532SHong Zhang -    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or PETSC_NULL)
3539429d309bSHong Zhang 
3540429d309bSHong Zhang    Output Parameter:
354187025532SHong Zhang +    B_oth - the sequential matrix generated
3542429d309bSHong Zhang 
3543429d309bSHong Zhang     Level: developer
3544429d309bSHong Zhang 
3545429d309bSHong Zhang @*/
354687025532SHong Zhang PetscErrorCode MatGetBrowsOfAoCols(Mat A,Mat B,MatReuse scall,PetscInt **startsj,PetscScalar **bufa_ptr,Mat *B_oth)
3547429d309bSHong Zhang {
3548a6b2eed2SHong Zhang   VecScatter_MPI_General *gen_to,*gen_from;
3549429d309bSHong Zhang   PetscErrorCode    ierr;
355087025532SHong Zhang   Mat_MPIAIJ        *a=(Mat_MPIAIJ*)A->data,*b=(Mat_MPIAIJ*)B->data;
355187025532SHong Zhang   Mat_SeqAIJ        *b_oth;
3552a6b2eed2SHong Zhang   VecScatter        ctx=a->Mvctx;
3553a6b2eed2SHong Zhang   MPI_Comm          comm=ctx->comm;
355487025532SHong Zhang   PetscMPIInt       *rprocs,*sprocs,tag=ctx->tag,rank;
355568733de6SHong Zhang   PetscInt          *rowlen,*bufj,*bufJ,ncols,aBn=a->B->n,row,*b_othi,*b_othj;
355687025532SHong Zhang   PetscScalar       *rvalues,*svalues,*b_otha,*bufa,*bufA;
355713f74950SBarry Smith   PetscInt          i,k,l,nrecvs,nsends,nrows,*rrow,*srow,*rstarts,*rstartsj,*sstarts,*sstartsj,len;
3558a6b2eed2SHong Zhang   MPI_Request       *rwaits,*swaits;
355987025532SHong Zhang   MPI_Status        *sstatus,rstatus;
3560a6b2eed2SHong Zhang   const PetscInt    *cols;
3561a6b2eed2SHong Zhang   const PetscScalar *vals;
356213f74950SBarry Smith   PetscMPIInt       j;
3563429d309bSHong Zhang 
3564429d309bSHong Zhang   PetscFunctionBegin;
3565429d309bSHong Zhang   if (a->cstart != b->rstart || a->cend != b->rend){
3566a6b2eed2SHong Zhang     SETERRQ4(PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%d, %d) != (%d,%d)",a->cstart,a->cend,b->rstart,b->rend);
3567429d309bSHong Zhang   }
3568429d309bSHong Zhang   if (!logkey_GetBrowsOfAocols) {
35691677a5d7SHong Zhang     ierr = PetscLogEventRegister(&logkey_GetBrowsOfAocols,"MatGetBrAoCol",MAT_COOKIE);
3570429d309bSHong Zhang   }
3571429d309bSHong Zhang   ierr = PetscLogEventBegin(logkey_GetBrowsOfAocols,A,B,0,0);CHKERRQ(ierr);
3572a6b2eed2SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
3573a6b2eed2SHong Zhang 
3574a6b2eed2SHong Zhang   gen_to   = (VecScatter_MPI_General*)ctx->todata;
3575a6b2eed2SHong Zhang   gen_from = (VecScatter_MPI_General*)ctx->fromdata;
3576a6b2eed2SHong Zhang   rvalues  = gen_from->values; /* holds the length of sending row */
3577a6b2eed2SHong Zhang   svalues  = gen_to->values;   /* holds the length of receiving row */
3578a6b2eed2SHong Zhang   nrecvs   = gen_from->n;
3579a6b2eed2SHong Zhang   nsends   = gen_to->n;
3580a6b2eed2SHong Zhang   rwaits   = gen_from->requests;
3581a6b2eed2SHong Zhang   swaits   = gen_to->requests;
3582a6b2eed2SHong Zhang   rrow     = gen_from->indices; /* local row index to be received */
3583a6b2eed2SHong Zhang   srow     = gen_to->indices;   /* local row index to be sent */
3584a6b2eed2SHong Zhang   rstarts  = gen_from->starts;
3585a6b2eed2SHong Zhang   sstarts  = gen_to->starts;
3586a6b2eed2SHong Zhang   rprocs   = gen_from->procs;
3587a6b2eed2SHong Zhang   sprocs   = gen_to->procs;
3588a6b2eed2SHong Zhang   sstatus  = gen_to->sstatus;
3589429d309bSHong Zhang 
3590dea91ad1SHong Zhang   if (!startsj || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
3591429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3592a6b2eed2SHong Zhang     /* i-array */
3593a6b2eed2SHong Zhang     /*---------*/
3594a6b2eed2SHong Zhang     /*  post receives */
3595a6b2eed2SHong Zhang     for (i=0; i<nrecvs; i++){
3596a6b2eed2SHong Zhang       rowlen = (PetscInt*)rvalues + rstarts[i];
359787025532SHong Zhang       nrows = rstarts[i+1]-rstarts[i];
359887025532SHong Zhang       ierr = MPI_Irecv(rowlen,nrows,MPIU_INT,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
3599429d309bSHong Zhang     }
3600a6b2eed2SHong Zhang 
3601a6b2eed2SHong Zhang     /* pack the outgoing message */
360287025532SHong Zhang     ierr = PetscMalloc((nsends+nrecvs+3)*sizeof(PetscInt),&sstartsj);CHKERRQ(ierr);
3603a6b2eed2SHong Zhang     rstartsj = sstartsj + nsends +1;
3604a6b2eed2SHong Zhang     sstartsj[0] = 0;  rstartsj[0] = 0;
3605a6b2eed2SHong Zhang     len = 0; /* total length of j or a array to be sent */
3606a6b2eed2SHong Zhang     k = 0;
3607a6b2eed2SHong Zhang     for (i=0; i<nsends; i++){
3608a6b2eed2SHong Zhang       rowlen = (PetscInt*)svalues + sstarts[i];
360987025532SHong Zhang       nrows = sstarts[i+1]-sstarts[i]; /* num of rows */
361087025532SHong Zhang       for (j=0; j<nrows; j++) {
3611a6b2eed2SHong Zhang         row = srow[k] + b->rowners[rank]; /* global row idx */
3612a6b2eed2SHong Zhang         ierr = MatGetRow(B,row,&rowlen[j],PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); /* rowlength */
3613a6b2eed2SHong Zhang         len += rowlen[j];
3614a6b2eed2SHong Zhang         ierr = MatRestoreRow(B,row,&ncols,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr);
3615a6b2eed2SHong Zhang         k++;
3616429d309bSHong Zhang       }
361787025532SHong Zhang       ierr = MPI_Isend(rowlen,nrows,MPIU_INT,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
3618dea91ad1SHong Zhang        sstartsj[i+1] = len;  /* starting point of (i+1)-th outgoing msg in bufj and bufa */
3619429d309bSHong Zhang     }
362087025532SHong Zhang     /* recvs and sends of i-array are completed */
362187025532SHong Zhang     i = nrecvs;
362287025532SHong Zhang     while (i--) {
362387025532SHong Zhang       ierr = MPI_Waitany(nrecvs,rwaits,&j,&rstatus);CHKERRQ(ierr);
362487025532SHong Zhang     }
3625a6b2eed2SHong Zhang     if (nsends) {
3626a6b2eed2SHong Zhang       ierr = MPI_Waitall(nsends,swaits,sstatus);CHKERRQ(ierr);
3627a6b2eed2SHong Zhang     }
3628a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
3629a6b2eed2SHong Zhang     ierr = PetscMalloc((len+1)*sizeof(PetscInt),&bufj);CHKERRQ(ierr);
3630a6b2eed2SHong Zhang     ierr = PetscMalloc((len+1)*sizeof(PetscScalar),&bufa);CHKERRQ(ierr);
3631a6b2eed2SHong Zhang 
363287025532SHong Zhang     /* create i-array of B_oth */
363387025532SHong Zhang     ierr = PetscMalloc((aBn+2)*sizeof(PetscInt),&b_othi);CHKERRQ(ierr);
363487025532SHong Zhang     b_othi[0] = 0;
3635a6b2eed2SHong Zhang     len = 0; /* total length of j or a array to be received */
3636a6b2eed2SHong Zhang     k = 0;
3637a6b2eed2SHong Zhang     for (i=0; i<nrecvs; i++){
3638a6b2eed2SHong Zhang       rowlen = (PetscInt*)rvalues + rstarts[i];
363987025532SHong Zhang       nrows = rstarts[i+1]-rstarts[i];
364087025532SHong Zhang       for (j=0; j<nrows; j++) {
364187025532SHong Zhang         b_othi[k+1] = b_othi[k] + rowlen[j];
3642a6b2eed2SHong Zhang         len += rowlen[j]; k++;
3643a6b2eed2SHong Zhang       }
3644dea91ad1SHong Zhang       rstartsj[i+1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
3645a6b2eed2SHong Zhang     }
3646a6b2eed2SHong Zhang 
364787025532SHong Zhang     /* allocate space for j and a arrrays of B_oth */
364887025532SHong Zhang     ierr = PetscMalloc((b_othi[aBn]+1)*sizeof(PetscInt),&b_othj);CHKERRQ(ierr);
364987025532SHong Zhang     ierr = PetscMalloc((b_othi[aBn]+1)*sizeof(PetscScalar),&b_otha);CHKERRQ(ierr);
3650a6b2eed2SHong Zhang 
365187025532SHong Zhang     /* j-array */
365287025532SHong Zhang     /*---------*/
3653a6b2eed2SHong Zhang     /*  post receives of j-array */
3654a6b2eed2SHong Zhang     for (i=0; i<nrecvs; i++){
365587025532SHong Zhang       nrows = rstartsj[i+1]-rstartsj[i]; /* length of the msg received */
365687025532SHong Zhang       ierr = MPI_Irecv(b_othj+rstartsj[i],nrows,MPIU_INT,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
3657a6b2eed2SHong Zhang     }
3658a6b2eed2SHong Zhang     k = 0;
3659a6b2eed2SHong Zhang     for (i=0; i<nsends; i++){
366087025532SHong Zhang       nrows = sstarts[i+1]-sstarts[i]; /* num of rows */
3661a6b2eed2SHong Zhang       bufJ = bufj+sstartsj[i];
366287025532SHong Zhang       for (j=0; j<nrows; j++) {
366387025532SHong Zhang         row  = srow[k++] + b->rowners[rank]; /* global row idx */
366487025532SHong Zhang         ierr = MatGetRow(B,row,&ncols,&cols,PETSC_NULL);CHKERRQ(ierr);
3665a6b2eed2SHong Zhang         for (l=0; l<ncols; l++){
3666a6b2eed2SHong Zhang           *bufJ++ = cols[l];
366787025532SHong Zhang         }
3668dea91ad1SHong Zhang         ierr = MatRestoreRow(B,row,&ncols,&cols,PETSC_NULL);CHKERRQ(ierr);
366987025532SHong Zhang       }
367087025532SHong Zhang       ierr = MPI_Isend(bufj+sstartsj[i],sstartsj[i+1]-sstartsj[i],MPIU_INT,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
367187025532SHong Zhang     }
367287025532SHong Zhang 
367387025532SHong Zhang     /* recvs and sends of j-array are completed */
367487025532SHong Zhang     i = nrecvs;
367587025532SHong Zhang     while (i--) {
367687025532SHong Zhang       ierr = MPI_Waitany(nrecvs,rwaits,&j,&rstatus);CHKERRQ(ierr);
367787025532SHong Zhang     }
367887025532SHong Zhang     if (nsends) {
367987025532SHong Zhang       ierr = MPI_Waitall(nsends,swaits,sstatus);CHKERRQ(ierr);
368087025532SHong Zhang     }
368187025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX){
368287025532SHong Zhang     sstartsj = *startsj;
368387025532SHong Zhang     rstartsj = sstartsj + nsends +1;
368487025532SHong Zhang     bufa     = *bufa_ptr;
368587025532SHong Zhang     b_oth    = (Mat_SeqAIJ*)(*B_oth)->data;
368687025532SHong Zhang     b_otha   = b_oth->a;
368787025532SHong Zhang   } else {
368887025532SHong Zhang     SETERRQ(PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not posses an object container");
368987025532SHong Zhang   }
369087025532SHong Zhang 
369187025532SHong Zhang   /* a-array */
369287025532SHong Zhang   /*---------*/
369387025532SHong Zhang   /*  post receives of a-array */
369487025532SHong Zhang   for (i=0; i<nrecvs; i++){
369587025532SHong Zhang     nrows = rstartsj[i+1]-rstartsj[i]; /* length of the msg received */
369687025532SHong Zhang     ierr = MPI_Irecv(b_otha+rstartsj[i],nrows,MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
369787025532SHong Zhang   }
369887025532SHong Zhang   k = 0;
369987025532SHong Zhang   for (i=0; i<nsends; i++){
370087025532SHong Zhang     nrows = sstarts[i+1]-sstarts[i];
370187025532SHong Zhang     bufA = bufa+sstartsj[i];
370287025532SHong Zhang     for (j=0; j<nrows; j++) {
370387025532SHong Zhang       row  = srow[k++] + b->rowners[rank]; /* global row idx */
370487025532SHong Zhang       ierr = MatGetRow(B,row,&ncols,PETSC_NULL,&vals);CHKERRQ(ierr);
370587025532SHong Zhang       for (l=0; l<ncols; l++){
3706a6b2eed2SHong Zhang         *bufA++ = vals[l];
3707a6b2eed2SHong Zhang       }
3708dea91ad1SHong Zhang       ierr = MatRestoreRow(B,row,&ncols,PETSC_NULL,&vals);CHKERRQ(ierr);
370987025532SHong Zhang 
3710a6b2eed2SHong Zhang     }
371187025532SHong Zhang     ierr = MPI_Isend(bufa+sstartsj[i],sstartsj[i+1]-sstartsj[i],MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
3712a6b2eed2SHong Zhang   }
371387025532SHong Zhang   /* recvs and sends of a-array are completed */
371487025532SHong Zhang   i = nrecvs;
371587025532SHong Zhang   while (i--) {
371687025532SHong Zhang     ierr = MPI_Waitany(nrecvs,rwaits,&j,&rstatus);CHKERRQ(ierr);
371787025532SHong Zhang   }
3718a6b2eed2SHong Zhang    if (nsends) {
3719a6b2eed2SHong Zhang     ierr = MPI_Waitall(nsends,swaits,sstatus);CHKERRQ(ierr);
3720a6b2eed2SHong Zhang   }
3721a6b2eed2SHong Zhang 
372287025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3723a6b2eed2SHong Zhang     /* put together the new matrix */
372487025532SHong Zhang     ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,aBn,B->N,b_othi,b_othj,b_otha,B_oth);CHKERRQ(ierr);
3725a6b2eed2SHong Zhang 
3726a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
3727a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
372887025532SHong Zhang     b_oth = (Mat_SeqAIJ *)(*B_oth)->data;
372987025532SHong Zhang     b_oth->freedata = PETSC_TRUE;
373087025532SHong Zhang     b_oth->nonew    = 0;
3731a6b2eed2SHong Zhang 
3732a6b2eed2SHong Zhang     ierr = PetscFree(bufj);CHKERRQ(ierr);
3733dea91ad1SHong Zhang     if (!startsj || !bufa_ptr){
3734dea91ad1SHong Zhang       ierr = PetscFree(sstartsj);CHKERRQ(ierr);
3735dea91ad1SHong Zhang       ierr = PetscFree(bufa_ptr);CHKERRQ(ierr);
3736dea91ad1SHong Zhang     } else {
373787025532SHong Zhang       *startsj  = sstartsj;
373887025532SHong Zhang       *bufa_ptr = bufa;
373987025532SHong Zhang     }
3740dea91ad1SHong Zhang   }
3741429d309bSHong Zhang   ierr = PetscLogEventEnd(logkey_GetBrowsOfAocols,A,B,0,0);CHKERRQ(ierr);
3742a6b2eed2SHong Zhang 
3743429d309bSHong Zhang   PetscFunctionReturn(0);
3744429d309bSHong Zhang }
3745ccd8e176SBarry Smith 
3746ccd8e176SBarry Smith /*MC
3747ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
3748ccd8e176SBarry Smith 
3749ccd8e176SBarry Smith    Options Database Keys:
3750ccd8e176SBarry Smith . -mat_type mpiaij - sets the matrix type to "mpiaij" during a call to MatSetFromOptions()
3751ccd8e176SBarry Smith 
3752ccd8e176SBarry Smith   Level: beginner
3753ccd8e176SBarry Smith 
3754ccd8e176SBarry Smith .seealso: MatCreateMPIAIJ
3755ccd8e176SBarry Smith M*/
3756ccd8e176SBarry Smith 
3757ccd8e176SBarry Smith EXTERN_C_BEGIN
3758ccd8e176SBarry Smith #undef __FUNCT__
3759ccd8e176SBarry Smith #define __FUNCT__ "MatCreate_MPIAIJ"
3760ccd8e176SBarry Smith PetscErrorCode MatCreate_MPIAIJ(Mat B)
3761ccd8e176SBarry Smith {
3762ccd8e176SBarry Smith   Mat_MPIAIJ     *b;
3763ccd8e176SBarry Smith   PetscErrorCode ierr;
3764ccd8e176SBarry Smith   PetscInt       i;
3765ccd8e176SBarry Smith   PetscMPIInt    size;
3766ccd8e176SBarry Smith 
3767ccd8e176SBarry Smith   PetscFunctionBegin;
3768ccd8e176SBarry Smith   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
3769ccd8e176SBarry Smith 
3770ccd8e176SBarry Smith   ierr            = PetscNew(Mat_MPIAIJ,&b);CHKERRQ(ierr);
3771ccd8e176SBarry Smith   B->data         = (void*)b;
3772ccd8e176SBarry Smith   ierr            = PetscMemzero(b,sizeof(Mat_MPIAIJ));CHKERRQ(ierr);
3773ccd8e176SBarry Smith   ierr            = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
3774ccd8e176SBarry Smith   B->factor       = 0;
3775ccd8e176SBarry Smith   B->assembled    = PETSC_FALSE;
3776ccd8e176SBarry Smith   B->mapping      = 0;
3777ccd8e176SBarry Smith 
3778ccd8e176SBarry Smith   B->insertmode      = NOT_SET_VALUES;
3779ccd8e176SBarry Smith   b->size            = size;
3780ccd8e176SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
3781ccd8e176SBarry Smith 
3782ccd8e176SBarry Smith   ierr = PetscSplitOwnership(B->comm,&B->m,&B->M);CHKERRQ(ierr);
3783ccd8e176SBarry Smith   ierr = PetscSplitOwnership(B->comm,&B->n,&B->N);CHKERRQ(ierr);
3784ccd8e176SBarry Smith 
3785ccd8e176SBarry Smith   /* the information in the maps duplicates the information computed below, eventually
3786ccd8e176SBarry Smith      we should remove the duplicate information that is not contained in the maps */
3787ccd8e176SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
3788ccd8e176SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
3789ccd8e176SBarry Smith 
3790ccd8e176SBarry Smith   /* build local table of row and column ownerships */
3791ccd8e176SBarry Smith   ierr = PetscMalloc(2*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
3792ccd8e176SBarry Smith   PetscLogObjectMemory(B,2*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
3793ccd8e176SBarry Smith   b->cowners = b->rowners + b->size + 2;
3794ccd8e176SBarry Smith   ierr = MPI_Allgather(&B->m,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
3795ccd8e176SBarry Smith   b->rowners[0] = 0;
3796ccd8e176SBarry Smith   for (i=2; i<=b->size; i++) {
3797ccd8e176SBarry Smith     b->rowners[i] += b->rowners[i-1];
3798ccd8e176SBarry Smith   }
3799ccd8e176SBarry Smith   b->rstart = b->rowners[b->rank];
3800ccd8e176SBarry Smith   b->rend   = b->rowners[b->rank+1];
3801ccd8e176SBarry Smith   ierr = MPI_Allgather(&B->n,1,MPIU_INT,b->cowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
3802ccd8e176SBarry Smith   b->cowners[0] = 0;
3803ccd8e176SBarry Smith   for (i=2; i<=b->size; i++) {
3804ccd8e176SBarry Smith     b->cowners[i] += b->cowners[i-1];
3805ccd8e176SBarry Smith   }
3806ccd8e176SBarry Smith   b->cstart = b->cowners[b->rank];
3807ccd8e176SBarry Smith   b->cend   = b->cowners[b->rank+1];
3808ccd8e176SBarry Smith 
3809ccd8e176SBarry Smith   /* build cache for off array entries formed */
3810ccd8e176SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
3811ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
3812ccd8e176SBarry Smith   b->colmap      = 0;
3813ccd8e176SBarry Smith   b->garray      = 0;
3814ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
3815ccd8e176SBarry Smith 
3816ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
3817ccd8e176SBarry Smith   b->lvec      = PETSC_NULL;
3818ccd8e176SBarry Smith   b->Mvctx     = PETSC_NULL;
3819ccd8e176SBarry Smith 
3820ccd8e176SBarry Smith   /* stuff for MatGetRow() */
3821ccd8e176SBarry Smith   b->rowindices   = 0;
3822ccd8e176SBarry Smith   b->rowvalues    = 0;
3823ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
3824ccd8e176SBarry Smith 
3825ccd8e176SBarry Smith   /* Explicitly create 2 MATSEQAIJ matrices. */
3826ccd8e176SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->n,B->m,B->n,&b->A);CHKERRQ(ierr);
3827ccd8e176SBarry Smith   ierr = MatSetType(b->A,MATSEQAIJ);CHKERRQ(ierr);
3828ccd8e176SBarry Smith   PetscLogObjectParent(B,b->A);
3829ccd8e176SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->N,B->m,B->N,&b->B);CHKERRQ(ierr);
3830ccd8e176SBarry Smith   ierr = MatSetType(b->B,MATSEQAIJ);CHKERRQ(ierr);
3831ccd8e176SBarry Smith   PetscLogObjectParent(B,b->B);
3832ccd8e176SBarry Smith 
3833ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
3834ccd8e176SBarry Smith                                      "MatStoreValues_MPIAIJ",
3835ccd8e176SBarry Smith                                      MatStoreValues_MPIAIJ);CHKERRQ(ierr);
3836ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
3837ccd8e176SBarry Smith                                      "MatRetrieveValues_MPIAIJ",
3838ccd8e176SBarry Smith                                      MatRetrieveValues_MPIAIJ);CHKERRQ(ierr);
3839ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
3840ccd8e176SBarry Smith 				     "MatGetDiagonalBlock_MPIAIJ",
3841ccd8e176SBarry Smith                                      MatGetDiagonalBlock_MPIAIJ);CHKERRQ(ierr);
3842ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatIsTranspose_C",
3843ccd8e176SBarry Smith 				     "MatIsTranspose_MPIAIJ",
3844ccd8e176SBarry Smith 				     MatIsTranspose_MPIAIJ);CHKERRQ(ierr);
3845ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIAIJSetPreallocation_C",
3846ccd8e176SBarry Smith 				     "MatMPIAIJSetPreallocation_MPIAIJ",
3847ccd8e176SBarry Smith 				     MatMPIAIJSetPreallocation_MPIAIJ);CHKERRQ(ierr);
3848ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIAIJSetPreallocationCSR_C",
3849ccd8e176SBarry Smith 				     "MatMPIAIJSetPreallocationCSR_MPIAIJ",
3850ccd8e176SBarry Smith 				     MatMPIAIJSetPreallocationCSR_MPIAIJ);CHKERRQ(ierr);
3851ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
3852ccd8e176SBarry Smith 				     "MatDiagonalScaleLocal_MPIAIJ",
3853ccd8e176SBarry Smith 				     MatDiagonalScaleLocal_MPIAIJ);CHKERRQ(ierr);
3854ccd8e176SBarry Smith   PetscFunctionReturn(0);
3855ccd8e176SBarry Smith }
3856ccd8e176SBarry Smith EXTERN_C_END
3857