1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788*8bb0f5c6SPierre Jolivet /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792*8bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIAIJ, 2793*8bb0f5c6SPierre Jolivet /*69*/ MatGetRowMinAbs_MPIAIJ, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 2796*8bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, 2797b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2798f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2799*8bb0f5c6SPierre Jolivet /*75*/ NULL, 2800*8bb0f5c6SPierre Jolivet NULL, 2801*8bb0f5c6SPierre Jolivet NULL, 2802*8bb0f5c6SPierre Jolivet MatLoad_MPIAIJ, 2803*8bb0f5c6SPierre Jolivet NULL, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 2807*8bb0f5c6SPierre Jolivet /*83*/ NULL, 2808f4259b30SLisandro Dalcin NULL, 280926be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2810*8bb0f5c6SPierre Jolivet MatPtAPNumeric_MPIAIJ_MPIAIJ, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813*8bb0f5c6SPierre Jolivet /*89*/ MatBindToCPU_MPIAIJ, 2814*8bb0f5c6SPierre Jolivet MatProductSetFromOptions_MPIAIJ, 2815f4259b30SLisandro Dalcin NULL, 2816f4259b30SLisandro Dalcin NULL, 28172fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2818*8bb0f5c6SPierre Jolivet /*94*/ NULL, 2819*8bb0f5c6SPierre Jolivet MatSetValuesRow_MPIAIJ, 282099cafbc1SBarry Smith MatRealPart_MPIAIJ, 282169db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2822f4259b30SLisandro Dalcin NULL, 2823*8bb0f5c6SPierre Jolivet /*99*/ NULL, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28265494a064SHong Zhang MatGetRowMin_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828*8bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPIAIJ, 2829*8bb0f5c6SPierre Jolivet MatGetSeqNonzeroStructure_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2832f4259b30SLisandro Dalcin NULL, 2833*8bb0f5c6SPierre Jolivet /*109*/ NULL, 2834*8bb0f5c6SPierre Jolivet MatMultDiagonalBlock_MPIAIJ, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin NULL, 2837f4259b30SLisandro Dalcin NULL, 2838*8bb0f5c6SPierre Jolivet /*114*/ MatGetMultiProcBlock_MPIAIJ, 2839*8bb0f5c6SPierre Jolivet MatFindNonzeroRows_MPIAIJ, 2840a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2841bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2842a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 2843*8bb0f5c6SPierre Jolivet /*119*/ MatCreateSubMatricesMPI_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2847f4259b30SLisandro Dalcin NULL, 2848*8bb0f5c6SPierre Jolivet /*124*/ NULL, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 2851*8bb0f5c6SPierre Jolivet MatSetBlockSizes_MPIAIJ, 2852f4259b30SLisandro Dalcin NULL, 2853*8bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 2854a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28554222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2856f4259b30SLisandro Dalcin NULL, 285772833a62Smarkadams4 NULL, 2858*8bb0f5c6SPierre Jolivet /*134*/ NULL, 285972833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28602d776b49SBarry Smith NULL, 2861eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28624cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 2863*8bb0f5c6SPierre Jolivet /*139*/ NULL, 286442ce410bSJunchao Zhang NULL, 286542ce410bSJunchao Zhang NULL, 2866fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 286736ce4990SBarry Smith 2868ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2869d71ae5a4SJacob Faibussowitsch { 28702e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28712e8a6d31SBarry Smith 28722e8a6d31SBarry Smith PetscFunctionBegin; 28739566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28749566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28762e8a6d31SBarry Smith } 28772e8a6d31SBarry Smith 2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2879d71ae5a4SJacob Faibussowitsch { 28802e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28812e8a6d31SBarry Smith 28822e8a6d31SBarry Smith PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28849566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28862e8a6d31SBarry Smith } 28878a729477SBarry Smith 2888d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2889d71ae5a4SJacob Faibussowitsch { 2890ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28915d2a9ed1SStefano Zampini PetscMPIInt size; 2892a23d5eceSKris Buschelman 2893a23d5eceSKris Buschelman PetscFunctionBegin; 2894ad79cf63SBarry Smith if (B->hash_active) { 2895aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2896ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2897ad79cf63SBarry Smith } 28989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2900899cda47SBarry Smith 2901cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2902eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2903cb7b82ddSBarry Smith #else 29049566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2905cb7b82ddSBarry Smith #endif 29069566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29089566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2909cb7b82ddSBarry Smith 29109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2911c508b908SBarry Smith 2912c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29149566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2918c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2919cb7b82ddSBarry Smith 2920c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2921ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2926c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2927899cda47SBarry Smith 29289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2930526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2931cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293215001458SStefano Zampini B->assembled = PETSC_FALSE; 29333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2934a23d5eceSKris Buschelman } 2935a23d5eceSKris Buschelman 2936ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2937d71ae5a4SJacob Faibussowitsch { 2938ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29394c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2940846b4da1SFande Kong 2941846b4da1SFande Kong PetscFunctionBegin; 2942846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29434c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29444c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29454c51d546SAlexander 29464c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29474c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29484c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 29494c51d546SAlexander PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29504c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29514c51d546SAlexander 29529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29544c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29554c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29569566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2957846b4da1SFande Kong 2958846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2959846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2960846b4da1SFande Kong B->assembled = PETSC_FALSE; 2961b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2962b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2964846b4da1SFande Kong } 2965846b4da1SFande Kong 2966d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2967d71ae5a4SJacob Faibussowitsch { 2968d6dfbf8fSBarry Smith Mat mat; 2969416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2970d6dfbf8fSBarry Smith 29713a40ed3dSBarry Smith PetscFunctionBegin; 2972f4259b30SLisandro Dalcin *newmat = NULL; 29739566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29769566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2977273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2978e1b6402fSHong Zhang 2979d5f3da31SBarry Smith mat->factortype = matin->factortype; 2980501880eeSStefano Zampini mat->assembled = matin->assembled; 2981e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2982d6dfbf8fSBarry Smith 298317699dbbSLois Curfman McInnes a->size = oldmat->size; 298417699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2985e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2986e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2987501880eeSStefano Zampini a->rowindices = NULL; 2988501880eeSStefano Zampini a->rowvalues = NULL; 2989bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2990d6dfbf8fSBarry Smith 29919566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29929566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2993420957c1SBarry Smith if (matin->hash_active) { 2994420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2995420957c1SBarry Smith } else { 2996420957c1SBarry Smith mat->preallocated = matin->preallocated; 29972ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2998aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2999eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3000b1fc9764SSatish Balay #else 30019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30029566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3003b1fc9764SSatish Balay #endif 3004501880eeSStefano Zampini } else a->colmap = NULL; 30053f41c07dSBarry Smith if (oldmat->garray) { 3006b1d57f15SBarry Smith PetscInt len; 3007d0f46423SBarry Smith len = oldmat->B->cmap->n; 30089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30099566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3010501880eeSStefano Zampini } else a->garray = NULL; 3011d6dfbf8fSBarry Smith 30120de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30130de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30140de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3015aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3016cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3017cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3018cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3019cff58d65SJunchao Zhang } 30209566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30219566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3022420957c1SBarry Smith } 30239566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30248a729477SBarry Smith *newmat = mat; 30253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30268a729477SBarry Smith } 3027416022c9SBarry Smith 3028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3029d71ae5a4SJacob Faibussowitsch { 303052f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303152f91c60SVaclav Hapla 303252f91c60SVaclav Hapla PetscFunctionBegin; 303352f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303452f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3035c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30369566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303952f91c60SVaclav Hapla if (isbinary) { 30409566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304152f91c60SVaclav Hapla } else if (ishdf5) { 304252f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30439566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304452f91c60SVaclav Hapla #else 304552f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304652f91c60SVaclav Hapla #endif 304752f91c60SVaclav Hapla } else { 304898921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304952f91c60SVaclav Hapla } 30503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305152f91c60SVaclav Hapla } 305252f91c60SVaclav Hapla 3053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3054d71ae5a4SJacob Faibussowitsch { 30553ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30563ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30573ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30588fb81238SShri Abhyankar 30598fb81238SShri Abhyankar PetscFunctionBegin; 30609566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30618fb81238SShri Abhyankar 30623ea6fe3dSLisandro Dalcin /* read in matrix header */ 30639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306408401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30659371c9d4SSatish Balay M = header[1]; 30669371c9d4SSatish Balay N = header[2]; 30679371c9d4SSatish Balay nz = header[3]; 306808401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306908401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307008401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307108ea439dSMark F. Adams 30723ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30739566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30743ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30753ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30763ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30798fb81238SShri Abhyankar 30803ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30819566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3082aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30838fb81238SShri Abhyankar 30843ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30889371c9d4SSatish Balay rowidxs[0] = 0; 30899371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30901690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3091462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309208401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309338b83642SBarry Smith } 309438b83642SBarry Smith 30953ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30989566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30993ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31019566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31029566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31048fb81238SShri Abhyankar } 31058fb81238SShri Abhyankar 31063782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3107ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3108d71ae5a4SJacob Faibussowitsch { 31094aa3045dSJed Brown IS iscol_local; 3110c5e4d11fSDmitry Karpeev PetscBool isstride; 31119725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31123782ecc7SHong Zhang 31133782ecc7SHong Zhang PetscFunctionBegin; 31143782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31163782ecc7SHong Zhang 3117c5e4d11fSDmitry Karpeev if (isstride) { 3118c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31199566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31229725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3123c5e4d11fSDmitry Karpeev } 31243782ecc7SHong Zhang 31259725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3126c5e4d11fSDmitry Karpeev if (gisstride) { 3127c5e4d11fSDmitry Karpeev PetscInt N; 31289566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31299566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31309566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3132c5e4d11fSDmitry Karpeev } else { 3133c5bfad50SMark F. Adams PetscInt cbs; 31349566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31359566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31369566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3137b79d0421SJed Brown } 31383782ecc7SHong Zhang 31393782ecc7SHong Zhang *isseq = iscol_local; 31403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3141c5e4d11fSDmitry Karpeev } 31428d2139bdSHong Zhang 3143ddfdf956SHong Zhang /* 31449c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31459c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3146ddfdf956SHong Zhang 3147ddfdf956SHong Zhang Input Parameters: 314827430b45SBarry Smith + mat - matrix 314927430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31509c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315127430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3152ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315327430b45SBarry Smith 315427430b45SBarry Smith Output Parameters: 315527430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315627430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315727430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315827430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3159ddfdf956SHong Zhang */ 3160835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3161d71ae5a4SJacob Faibussowitsch { 3162040216a4SHong Zhang Vec x, cmap; 3163040216a4SHong Zhang const PetscInt *is_idx; 3164040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31659c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3166040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3167040216a4SHong Zhang Mat B = a->B; 3168040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3169a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31708b3fa1f7SHong Zhang MPI_Comm comm; 31713a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31723782ecc7SHong Zhang 31733782ecc7SHong Zhang PetscFunctionBegin; 31749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31768b3fa1f7SHong Zhang 3177ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31789566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31799566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31809566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31819566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31820a351717SHong Zhang 31839c988bcaSHong Zhang /* Get start indices */ 31849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3185ddfdf956SHong Zhang isstart -= ncols; 31869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3187040216a4SHong Zhang 31889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31899566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31909566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3192ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31938b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3194ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31959c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31968b3fa1f7SHong Zhang } 31979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32008b3fa1f7SHong Zhang 32019c988bcaSHong Zhang /* Get iscol_d */ 32029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32039566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32049566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3205feb78a15SHong Zhang 32069c988bcaSHong Zhang /* Get isrow_d */ 32079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3208feb78a15SHong Zhang rstart = mat->rmap->rstart; 32099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32119c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3213feb78a15SHong Zhang 32149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32159566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32169566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3217feb78a15SHong Zhang 32189c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3221ddfdf956SHong Zhang 32229566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322307250d77SHong Zhang 32249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322664efcef9SHong Zhang 32279c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3228ddfdf956SHong Zhang /* off-process column indices */ 32299c988bcaSHong Zhang count = 0; 32309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3232feb78a15SHong Zhang 32339566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32349566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32358b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3236f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32379c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32381c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32391c645242SHong Zhang count++; 32408b3fa1f7SHong Zhang } 32418b3fa1f7SHong Zhang } 32429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324407250d77SHong Zhang 32459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3246b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3247b6d9b4e0SHong Zhang 32489566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32499c988bcaSHong Zhang *garray = cmap1; 32509c988bcaSHong Zhang 32519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3255040216a4SHong Zhang } 3256040216a4SHong Zhang 3257b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3258d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3259d71ae5a4SJacob Faibussowitsch { 3260b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32611fd43edeSHong Zhang Mat M = NULL; 32623b00a383SHong Zhang MPI_Comm comm; 3263b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32643b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3265c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32663b00a383SHong Zhang 32673b00a383SHong Zhang PetscFunctionBegin; 32689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32693b00a383SHong Zhang 32703b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3271b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327328b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32743b00a383SHong Zhang 32759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327628b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32773b00a383SHong Zhang 32789566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327928b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32803b00a383SHong Zhang 3281b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3282b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328548a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32883b00a383SHong Zhang 32893b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3290c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3291b20e2604SHong Zhang PetscInt BsubN; 32923b00a383SHong Zhang 3293b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32949566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32953b00a383SHong Zhang 3296b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32979566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32993b00a383SHong Zhang 3300c0c276a7Ssdargavi // Compact garray so its not of size Bn 3301c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3302c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3303c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3304c0c276a7Ssdargavi 33059c988bcaSHong Zhang /* Create submatrix M */ 3306c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3307c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3308c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33093b00a383SHong Zhang 3310b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3311b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33127cfce09cSHong Zhang 33139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3314b20e2604SHong Zhang n = asub->B->cmap->N; 3315b20e2604SHong Zhang if (BsubN > n) { 3316c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33177cfce09cSHong Zhang const PetscInt *idx; 33189c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33199566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33207cfce09cSHong Zhang 33219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33227cfce09cSHong Zhang j = 0; 33239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3324b20e2604SHong Zhang for (i = 0; i < n; i++) { 33257cfce09cSHong Zhang if (j >= BsubN) break; 33269c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33277cfce09cSHong Zhang 33289c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33297cfce09cSHong Zhang idx_new[i] = idx[j++]; 333098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33317cfce09cSHong Zhang } 33329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33337cfce09cSHong Zhang 33349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33359566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33367cfce09cSHong Zhang 3337b20e2604SHong Zhang } else if (BsubN < n) { 333898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3339b20e2604SHong Zhang } 33407cfce09cSHong Zhang 33419566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3342b20e2604SHong Zhang *submat = M; 33433b00a383SHong Zhang 3344e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33473b00a383SHong Zhang 33489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33503b00a383SHong Zhang 33519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33533b00a383SHong Zhang } 33543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33553b00a383SHong Zhang } 33563b00a383SHong Zhang 3357d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3358d71ae5a4SJacob Faibussowitsch { 33591358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33603782ecc7SHong Zhang PetscInt csize; 336118e627e3SHong Zhang PetscInt n, i, j, start, end; 33624a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33633782ecc7SHong Zhang MPI_Comm comm; 33643782ecc7SHong Zhang 33653782ecc7SHong Zhang PetscFunctionBegin; 3366bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3367a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33688f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3370d5761cdaSHong Zhang if (isrow_d) { 3371d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3372d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3373d5761cdaSHong Zhang } else { 33749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3375d5761cdaSHong Zhang if (iscol_local) { 3376d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3377d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3378d5761cdaSHong Zhang } 3379d5761cdaSHong Zhang } 33808f69fa7bSHong Zhang } else { 3381e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 338218e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33843782ecc7SHong Zhang if (!n) { 338518e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33863782ecc7SHong Zhang } else { 33879566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3389ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33908f69fa7bSHong Zhang } 33913782ecc7SHong Zhang 3392e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 339318e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 339518e627e3SHong Zhang if (!n) { 339618e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339718e627e3SHong Zhang } else { 33989566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 340018e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 340118e627e3SHong Zhang } 340218e627e3SHong Zhang 34039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3404462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 340518e627e3SHong Zhang sameRowDist = tsameDist[0]; 340618e627e3SHong Zhang } 340718e627e3SHong Zhang 340818e627e3SHong Zhang if (sameRowDist) { 3409b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34103b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34119566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3413b20e2604SHong Zhang } else { /* sameRowDist */ 34143b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34151358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34161358a193SHong Zhang PetscBool sorted; 34179566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34199566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 342008401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34211358a193SHong Zhang 34229566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34231358a193SHong Zhang if (sorted) { 34241358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34273782ecc7SHong Zhang } 34281358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342948c0d076SHong Zhang IS iscol_sub; 34309566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 343148c0d076SHong Zhang if (iscol_sub) { 34329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343448c0d076SHong Zhang } 34351358a193SHong Zhang } 34361358a193SHong Zhang } 34371358a193SHong Zhang } 34383782ecc7SHong Zhang 3439bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34403782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34419566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 344228b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34433782ecc7SHong Zhang } else { 344448a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34451358a193SHong Zhang } 34463782ecc7SHong Zhang 34479566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34489566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34498f69fa7bSHong Zhang 3450b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3453b79d0421SJed Brown } 34543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34554aa3045dSJed Brown } 34564aa3045dSJed Brown 3457feb78a15SHong Zhang /*@C 345811a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3459feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3460feb78a15SHong Zhang 3461d083f849SBarry Smith Collective 3462feb78a15SHong Zhang 3463feb78a15SHong Zhang Input Parameters: 3464feb78a15SHong Zhang + comm - MPI communicator 3465c0c276a7Ssdargavi . M - the global row size 3466c0c276a7Ssdargavi . N - the global column size 3467feb78a15SHong Zhang . A - "diagonal" portion of matrix 3468c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3469c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3470feb78a15SHong Zhang 3471feb78a15SHong Zhang Output Parameter: 34722ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 347327430b45SBarry Smith 3474feb78a15SHong Zhang Level: advanced 3475feb78a15SHong Zhang 3476feb78a15SHong Zhang Notes: 347711a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347811a5261eSBarry Smith 3479c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3480feb78a15SHong Zhang 34811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3482feb78a15SHong Zhang @*/ 3483c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3484d71ae5a4SJacob Faibussowitsch { 3485c0c276a7Ssdargavi PetscInt m, n; 34864ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3487f18d1d10SJunchao Zhang Mat_MPIAIJ *mpiaij; 3488f18d1d10SJunchao Zhang Mat C; 3489feb78a15SHong Zhang 3490feb78a15SHong Zhang PetscFunctionBegin; 3491f18d1d10SJunchao Zhang PetscCall(MatCreate(comm, &C)); 34929566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 349308401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 349458b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3495feb78a15SHong Zhang 3496f18d1d10SJunchao Zhang PetscCall(MatSetSizes(C, m, n, M, N)); 34974ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34984ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 3499f18d1d10SJunchao Zhang PetscCall(MatSetType(C, mpi_mat_type)); 35004ab4d6f4SRichard Tran Mills 3501f18d1d10SJunchao Zhang PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs)); 3502f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->rmap)); 3503f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->cmap)); 3504feb78a15SHong Zhang 3505f18d1d10SJunchao Zhang mpiaij = (Mat_MPIAIJ *)C->data; 3506c0c276a7Ssdargavi mpiaij->A = A; 3507c0c276a7Ssdargavi mpiaij->B = B; 3508c0c276a7Ssdargavi mpiaij->garray = garray; 3509f18d1d10SJunchao Zhang C->preallocated = PETSC_TRUE; 3510f18d1d10SJunchao Zhang C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3511c0c276a7Ssdargavi 3512f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3513f18d1d10SJunchao Zhang PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3514c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3515c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3516c0c276a7Ssdargavi */ 3517f18d1d10SJunchao Zhang PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3518f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3519f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 3520f18d1d10SJunchao Zhang *mat = C; 35213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3522feb78a15SHong Zhang } 3523feb78a15SHong Zhang 3524ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35254aa3045dSJed Brown 3526d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3527d71ae5a4SJacob Faibussowitsch { 352898b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 352985f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 353098b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35311fd43edeSHong Zhang Mat M, Msub, B = a->B; 353298b658c4SHong Zhang MatScalar *aa; 353300e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3534a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 353598b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 353698b658c4SHong Zhang IS iscol_sub, iscmap; 353798b658c4SHong Zhang const PetscInt *is_idx, *cmap; 353818e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3539a31a438cSHong Zhang MPI_Comm comm; 35407e2c5f70SBarry Smith 3541a0ff6018SBarry Smith PetscFunctionBegin; 35429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3543d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 354528b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35469566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3547d5761cdaSHong Zhang 35489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 354928b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3550d5761cdaSHong Zhang 35519566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 355228b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3553d5761cdaSHong Zhang 35549566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3555d5761cdaSHong Zhang 3556d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35573b00a383SHong Zhang PetscBool flg; 35583b00a383SHong Zhang 35599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35609566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3561bcae8d28SHong Zhang 35623b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3563366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35649566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3565366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3566462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3567366a327dSHong Zhang if (allcolumns) { 3568366a327dSHong Zhang iscol_sub = iscol_local; 35699566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35709566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3571366a327dSHong Zhang 35723b00a383SHong Zhang } else { 35731358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3574244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35788d2139bdSHong Zhang count = 0; 3579a31a438cSHong Zhang k = 0; 3580a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3581a31a438cSHong Zhang j = is_idx[i]; 3582a31a438cSHong Zhang if (j >= cstart && j < cend) { 3583a31a438cSHong Zhang /* diagonal part of mat */ 35848d2139bdSHong Zhang idx[count] = j; 3585366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 35864a3daf6eSHong Zhang } else if (Bn) { 3587a31a438cSHong Zhang /* off-diagonal part of mat */ 3588a31a438cSHong Zhang if (j == garray[k]) { 35898d2139bdSHong Zhang idx[count] = j; 3590a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3591a31a438cSHong Zhang } else if (j > garray[k]) { 3592a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3593a31a438cSHong Zhang if (j == garray[k]) { 3594a31a438cSHong Zhang idx[count] = j; 3595a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 35968d2139bdSHong Zhang } 35978d2139bdSHong Zhang } 35988d2139bdSHong Zhang } 35998d2139bdSHong Zhang } 36009566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36018d2139bdSHong Zhang 36029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36039566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36049566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3605b6d9b4e0SHong Zhang 36069566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3607a31a438cSHong Zhang } 36088b3fa1f7SHong Zhang 36093b00a383SHong Zhang /* (3) Create sequential Msub */ 36109566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3611d5761cdaSHong Zhang } 36128d2139bdSHong Zhang 36139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 361457508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 361598b658c4SHong Zhang ii = aij->i; 36169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3617a0ff6018SBarry Smith 3618a0ff6018SBarry Smith /* 3619a0ff6018SBarry Smith m - number of local rows 3620a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3621a0ff6018SBarry Smith rstart - first row in new global matrix generated 3622a0ff6018SBarry Smith */ 36239566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 362498b658c4SHong Zhang 36253b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36263b00a383SHong Zhang /* (4) Create parallel newmat */ 362798b658c4SHong Zhang PetscMPIInt rank, size; 3628bcae8d28SHong Zhang PetscInt csize; 362998b658c4SHong Zhang 36309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 363200e6dbe6SBarry Smith 3633a0ff6018SBarry Smith /* 363400e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 363500e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3636a0ff6018SBarry Smith */ 363700e6dbe6SBarry Smith 363800e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36399566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36406a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36419566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3642a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3643e2c4fddaSBarry Smith nlocal = m; 36446a6a5d1dSBarry Smith } else { 3645a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3646ab50ec6bSBarry Smith } 3647ab50ec6bSBarry Smith } else { 36486a6a5d1dSBarry Smith nlocal = csize; 36496a6a5d1dSBarry Smith } 36509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 365100e6dbe6SBarry Smith rstart = rend - nlocal; 3652aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 365300e6dbe6SBarry Smith 365400e6dbe6SBarry Smith /* next, compute all the lengths */ 365598b658c4SHong Zhang jj = aij->j; 36569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 365700e6dbe6SBarry Smith olens = dlens + m; 365800e6dbe6SBarry Smith for (i = 0; i < m; i++) { 365900e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 366000e6dbe6SBarry Smith olen = 0; 366100e6dbe6SBarry Smith dlen = 0; 366200e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 366315b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 366400e6dbe6SBarry Smith else dlen++; 366500e6dbe6SBarry Smith jj++; 366600e6dbe6SBarry Smith } 366700e6dbe6SBarry Smith olens[i] = olen; 366800e6dbe6SBarry Smith dlens[i] = dlen; 366900e6dbe6SBarry Smith } 3670b6d9b4e0SHong Zhang 36719566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36729566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 367398b658c4SHong Zhang 36749566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36779566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36789566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36799566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3680d5761cdaSHong Zhang 3681d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3682a0ff6018SBarry Smith M = *newmat; 36839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 368408401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36859566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3686c48de900SBarry Smith /* 3687c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3688c48de900SBarry Smith rather than the slower MatSetValues(). 3689c48de900SBarry Smith */ 3690c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3691c48de900SBarry Smith M->assembled = PETSC_FALSE; 3692a0ff6018SBarry Smith } 3693548ecf4dSHong Zhang 36943b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 36959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 36969566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 369798b658c4SHong Zhang 369898b658c4SHong Zhang jj = aij->j; 36999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3700a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3701a0ff6018SBarry Smith row = rstart + i; 370200e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 370315b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37049566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37059371c9d4SSatish Balay jj += nz; 37069371c9d4SSatish Balay aa += nz; 3707a0ff6018SBarry Smith } 37089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37099566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3710a0ff6018SBarry Smith 37119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3713fee21e36SBarry Smith 37149566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 371598b658c4SHong Zhang 371698b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3717fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37183b00a383SHong Zhang *newmat = M; 3719f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 372198b658c4SHong Zhang 3722f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 372498b658c4SHong Zhang 3725f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3727bcae8d28SHong Zhang 3728bcae8d28SHong Zhang if (iscol_local) { 3729f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3731bcae8d28SHong Zhang } 373298b658c4SHong Zhang } 37333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3734a0ff6018SBarry Smith } 3735273d9f13SBarry Smith 3736df40acb1SHong Zhang /* 3737df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3738df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3739df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3740df40acb1SHong Zhang 374111a5261eSBarry Smith This requires a sequential iscol with all indices. 3742df40acb1SHong Zhang */ 3743d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3744d71ae5a4SJacob Faibussowitsch { 3745df40acb1SHong Zhang PetscMPIInt rank, size; 3746df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3747df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3748df40acb1SHong Zhang Mat M, Mreuse; 374998b658c4SHong Zhang MatScalar *aa, *vwork; 3750df40acb1SHong Zhang MPI_Comm comm; 3751df40acb1SHong Zhang Mat_SeqAIJ *aij; 37520b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3753df40acb1SHong Zhang 3754df40acb1SHong Zhang PetscFunctionBegin; 37559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3758df40acb1SHong Zhang 37590b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37609566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37620b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3763462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37640b27a90eSHong Zhang 3765df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37669566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 376728b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3769df40acb1SHong Zhang } else { 37709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3771df40acb1SHong Zhang } 3772df40acb1SHong Zhang 3773df40acb1SHong Zhang /* 3774df40acb1SHong Zhang m - number of local rows 3775df40acb1SHong Zhang n - number of columns (same on all processors) 3776df40acb1SHong Zhang rstart - first row in new global matrix generated 3777df40acb1SHong Zhang */ 37789566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37799566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3780df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 378157508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3782df40acb1SHong Zhang ii = aij->i; 3783df40acb1SHong Zhang jj = aij->j; 3784df40acb1SHong Zhang 3785df40acb1SHong Zhang /* 3786df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3787df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3788df40acb1SHong Zhang */ 3789df40acb1SHong Zhang 3790df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3791df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 37929566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3793df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3794df40acb1SHong Zhang nlocal = m; 3795df40acb1SHong Zhang } else { 3796df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3797df40acb1SHong Zhang } 3798df40acb1SHong Zhang } else { 3799df40acb1SHong Zhang nlocal = csize; 3800df40acb1SHong Zhang } 38019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3802df40acb1SHong Zhang rstart = rend - nlocal; 3803aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3804df40acb1SHong Zhang 3805df40acb1SHong Zhang /* next, compute all the lengths */ 38069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3807df40acb1SHong Zhang olens = dlens + m; 3808df40acb1SHong Zhang for (i = 0; i < m; i++) { 3809df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3810df40acb1SHong Zhang olen = 0; 3811df40acb1SHong Zhang dlen = 0; 3812df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3813df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3814df40acb1SHong Zhang else dlen++; 3815df40acb1SHong Zhang jj++; 3816df40acb1SHong Zhang } 3817df40acb1SHong Zhang olens[i] = olen; 3818df40acb1SHong Zhang dlens[i] = dlen; 3819df40acb1SHong Zhang } 38209566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38229566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38239566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38259566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3826df40acb1SHong Zhang } else { 3827df40acb1SHong Zhang PetscInt ml, nl; 3828df40acb1SHong Zhang 3829df40acb1SHong Zhang M = *newmat; 38309566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 383108401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38329566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3833df40acb1SHong Zhang /* 3834df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3835df40acb1SHong Zhang rather than the slower MatSetValues(). 3836df40acb1SHong Zhang */ 3837df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3838df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3839df40acb1SHong Zhang } 38409566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 384157508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3842df40acb1SHong Zhang ii = aij->i; 3843df40acb1SHong Zhang jj = aij->j; 38442e5835c6SStefano Zampini 38452e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3847df40acb1SHong Zhang for (i = 0; i < m; i++) { 3848df40acb1SHong Zhang row = rstart + i; 3849df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38509371c9d4SSatish Balay cwork = jj; 38518e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38529371c9d4SSatish Balay vwork = aa; 38538e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38549566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3855df40acb1SHong Zhang } 38569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3857df40acb1SHong Zhang 38589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3860df40acb1SHong Zhang *newmat = M; 3861df40acb1SHong Zhang 3862df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3863df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38649566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3866df40acb1SHong Zhang } 38673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3868df40acb1SHong Zhang } 3869df40acb1SHong Zhang 3870ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3871d71ae5a4SJacob Faibussowitsch { 38726a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38739f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3874ccd8e176SBarry Smith const PetscInt *JJ; 3875eeb24464SBarry Smith PetscBool nooffprocentries; 38766a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3877ccd8e176SBarry Smith 3878ccd8e176SBarry Smith PetscFunctionBegin; 38799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3881d0f46423SBarry Smith m = B->rmap->n; 3882d0f46423SBarry Smith cstart = B->cmap->rstart; 3883d0f46423SBarry Smith cend = B->cmap->rend; 3884d0f46423SBarry Smith rstart = B->rmap->rstart; 38859f0612e4SBarry Smith irstart = Ii[0]; 3886899cda47SBarry Smith 38879566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3888ccd8e176SBarry Smith 388976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 38908f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3891ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 38929f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 389308401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 389408401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 389508401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3896ecc77c7aSBarry Smith } 389776bd3646SJed Brown } 3898ecc77c7aSBarry Smith 38998f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3900b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39019f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3902ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3903ccd8e176SBarry Smith d = 0; 39040daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39050daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3906ccd8e176SBarry Smith } 3907ccd8e176SBarry Smith d_nnz[i] = d; 3908ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3909ccd8e176SBarry Smith } 39109566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39119566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3912ccd8e176SBarry Smith 39138f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3914ccd8e176SBarry Smith ii = i + rstart; 39159f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3916ccd8e176SBarry Smith } 3917eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3918eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3921eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3922ccd8e176SBarry Smith 39236a3d2595SBarry Smith /* count number of entries below block diagonal */ 39246a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39256a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39266a3d2595SBarry Smith Aij->ld = ld; 39276a3d2595SBarry Smith for (i = 0; i < m; i++) { 39286a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39296a3d2595SBarry Smith j = 0; 3930ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39316a3d2595SBarry Smith ld[i] = j; 3932720a2405SPierre Jolivet if (J) J += nnz; 39336a3d2595SBarry Smith } 39346a3d2595SBarry Smith 39359566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3937ccd8e176SBarry Smith } 3938ccd8e176SBarry Smith 39391eea217eSSatish Balay /*@ 394011a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3941ccd8e176SBarry Smith (the default parallel PETSc format). 3942ccd8e176SBarry Smith 3943d083f849SBarry Smith Collective 3944ccd8e176SBarry Smith 3945ccd8e176SBarry Smith Input Parameters: 3946a1661176SMatthew Knepley + B - the matrix 3947d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3948d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3949ccd8e176SBarry Smith - v - optional values in the matrix 3950ccd8e176SBarry Smith 3951ccd8e176SBarry Smith Level: developer 3952ccd8e176SBarry Smith 395312251496SSatish Balay Notes: 39542ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39552ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 395611a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 395712251496SSatish Balay 39582ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 395912251496SSatish Balay 3960a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3961a4bd8bc0SBarry Smith 3962a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3963a4bd8bc0SBarry Smith 3964a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3965a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3966a4bd8bc0SBarry Smith 396712251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 396812251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3969c5e4d11fSDmitry Karpeev as shown 397027430b45SBarry Smith .vb 397127430b45SBarry Smith 1 0 0 397227430b45SBarry Smith 2 0 3 P0 397327430b45SBarry Smith ------- 397427430b45SBarry Smith 4 5 6 P1 397527430b45SBarry Smith 397627430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 397727430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 397827430b45SBarry Smith j = {0,0,2} [size = 3] 397927430b45SBarry Smith v = {1,2,3} [size = 3] 398027430b45SBarry Smith 398127430b45SBarry Smith Process1 [P1] rows_owned=[2] 398227430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 398327430b45SBarry Smith j = {0,1,2} [size = 3] 398427430b45SBarry Smith v = {4,5,6} [size = 3] 398527430b45SBarry Smith .ve 398612251496SSatish Balay 3987fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 3988a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 3989ccd8e176SBarry Smith @*/ 3990d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 3991d71ae5a4SJacob Faibussowitsch { 3992ccd8e176SBarry Smith PetscFunctionBegin; 3993cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 39943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3995ccd8e176SBarry Smith } 3996ccd8e176SBarry Smith 39975d83a8b1SBarry Smith /*@ 399811a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 3999273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4000273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 400120f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4002273d9f13SBarry Smith 4003d083f849SBarry Smith Collective 4004273d9f13SBarry Smith 4005273d9f13SBarry Smith Input Parameters: 40061c4f3114SJed Brown + B - the matrix 4007273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4008273d9f13SBarry Smith (same value is used for all local rows) 4009273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4010273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40112ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4012273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40133287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40143287b5eaSJed Brown the diagonal entry even if it is zero. 4015273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4016273d9f13SBarry Smith submatrix (same value is used for all local rows). 4017273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4018273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40192ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4020273d9f13SBarry Smith structure. The size of this array is equal to the number 4021273d9f13SBarry Smith of local rows, i.e 'm'. 4022273d9f13SBarry Smith 40232920cce0SJacob Faibussowitsch Example Usage: 402427430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 402527430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 402627430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 402727430b45SBarry Smith as follows 402827430b45SBarry Smith 402927430b45SBarry Smith .vb 403027430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 403127430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 403227430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 403327430b45SBarry Smith ------------------------------------- 403427430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 403527430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 403627430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 403727430b45SBarry Smith ------------------------------------- 403827430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 403927430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 404027430b45SBarry Smith .ve 404127430b45SBarry Smith 404227430b45SBarry Smith This can be represented as a collection of submatrices as 404327430b45SBarry Smith .vb 404427430b45SBarry Smith A B C 404527430b45SBarry Smith D E F 404627430b45SBarry Smith G H I 404727430b45SBarry Smith .ve 404827430b45SBarry Smith 404927430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 405027430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 405127430b45SBarry Smith 405227430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405327430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405427430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 405527430b45SBarry Smith 405627430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 405727430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 405827430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 405927430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 406027430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40615163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 406227430b45SBarry Smith 406320f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40645163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40655163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40665163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40675163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 406820f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 406927430b45SBarry Smith .vb 407027430b45SBarry Smith proc0 dnz = 2, o_nz = 2 407127430b45SBarry Smith proc1 dnz = 3, o_nz = 2 407227430b45SBarry Smith proc2 dnz = 1, o_nz = 4 407327430b45SBarry Smith .ve 407420f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 407527430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 407627430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 407727430b45SBarry Smith 34 values. 407827430b45SBarry Smith 407920f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 408027430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 408120f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 408227430b45SBarry Smith .vb 408327430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 408427430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 408527430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 408627430b45SBarry Smith .ve 408727430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 408827430b45SBarry Smith hence pre-allocation is perfect. 408927430b45SBarry Smith 409027430b45SBarry Smith Level: intermediate 409127430b45SBarry Smith 409227430b45SBarry Smith Notes: 409349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 409449a6f317SBarry Smith 409527430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 40960598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4097651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4098273d9f13SBarry Smith 4099273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4100273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4101273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4102273d9f13SBarry Smith 4103273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4104a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4105a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4106a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4107a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4108a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4109a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4110a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4111a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4112273d9f13SBarry Smith 41132ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4114273d9f13SBarry Smith 411527430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4116aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 411727430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4118aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4119aa95bbe8SBarry Smith 41201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4121a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4122273d9f13SBarry Smith @*/ 4123d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4124d71ae5a4SJacob Faibussowitsch { 4125273d9f13SBarry Smith PetscFunctionBegin; 41266ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41276ba663aaSJed Brown PetscValidType(B, 1); 4128cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4130273d9f13SBarry Smith } 4131273d9f13SBarry Smith 413258d36128SBarry Smith /*@ 413311a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41348f8f2f0dSBarry Smith CSR format for the local rows. 41352fb0ec9aSBarry Smith 4136d083f849SBarry Smith Collective 41372fb0ec9aSBarry Smith 41382fb0ec9aSBarry Smith Input Parameters: 41392fb0ec9aSBarry Smith + comm - MPI communicator 414011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41412fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4142d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4143d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4144d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4145d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41465693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41475693b835SJunchao Zhang . j - global column indices 4148f1f2ae84SBarry Smith - a - optional matrix values 41492fb0ec9aSBarry Smith 41502fb0ec9aSBarry Smith Output Parameter: 41512fb0ec9aSBarry Smith . mat - the matrix 415203bfb495SBarry Smith 41532fb0ec9aSBarry Smith Level: intermediate 41542fb0ec9aSBarry Smith 41552fb0ec9aSBarry Smith Notes: 41562ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4157d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4158d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41592fb0ec9aSBarry Smith 41602ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 416112251496SSatish Balay 41625693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4163a4bd8bc0SBarry Smith 41645693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4165a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4166a4bd8bc0SBarry Smith 416712251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4168d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4169c5e4d11fSDmitry Karpeev as shown 41702ef1f0ffSBarry Smith .vb 41712ef1f0ffSBarry Smith 1 0 0 41722ef1f0ffSBarry Smith 2 0 3 P0 41732ef1f0ffSBarry Smith ------- 41742ef1f0ffSBarry Smith 4 5 6 P1 41758f8f2f0dSBarry Smith 41762ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41772ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41782ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41792ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41802fb0ec9aSBarry Smith 41812ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41822ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41832ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41842ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 41852ef1f0ffSBarry Smith .ve 41862ef1f0ffSBarry Smith 4187d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 41885693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 41892fb0ec9aSBarry Smith @*/ 4190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4191d71ae5a4SJacob Faibussowitsch { 41922fb0ec9aSBarry Smith PetscFunctionBegin; 419308401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 419408401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 41959566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 41969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 41979566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 41989566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 41999566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42012fb0ec9aSBarry Smith } 42022fb0ec9aSBarry Smith 42038f8f2f0dSBarry Smith /*@ 420411a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42052ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42062ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42076a3d2595SBarry Smith 42086a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42098f8f2f0dSBarry Smith 42108f8f2f0dSBarry Smith Collective 42118f8f2f0dSBarry Smith 42128f8f2f0dSBarry Smith Input Parameters: 42138f8f2f0dSBarry Smith + mat - the matrix 421411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42158f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 421611a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42178f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 421811a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 421911a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42208f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42218f8f2f0dSBarry Smith . J - column indices 42228f8f2f0dSBarry Smith - v - matrix values 42238f8f2f0dSBarry Smith 42242ef1f0ffSBarry Smith Level: deprecated 42258f8f2f0dSBarry Smith 42261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4227a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42288f8f2f0dSBarry Smith @*/ 4229d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4230d71ae5a4SJacob Faibussowitsch { 42316a3d2595SBarry Smith PetscInt nnz, i; 42328f8f2f0dSBarry Smith PetscBool nooffprocentries; 42338f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4234fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4235fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42368f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42376a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42386a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42398f8f2f0dSBarry Smith 42408f8f2f0dSBarry Smith PetscFunctionBegin; 4241aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 424208401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 424308401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 424408401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42458f8f2f0dSBarry Smith 42469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42488f8f2f0dSBarry Smith 42498f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42504c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42514c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42524c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42534c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42544c17f1ccSBarry Smith } 42554c17f1ccSBarry Smith } 42568f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42578f8f2f0dSBarry Smith Iii = Ii[i]; 42588f8f2f0dSBarry Smith ldi = ld[i]; 42598f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42629566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42638f8f2f0dSBarry Smith ad += md; 42648f8f2f0dSBarry Smith ao += nnz - md; 42658f8f2f0dSBarry Smith } 42668f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42678f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42709566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42719566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42729566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42758f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42778f8f2f0dSBarry Smith } 42788f8f2f0dSBarry Smith 42796a3d2595SBarry Smith /*@ 428011a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42816a3d2595SBarry Smith 42826a3d2595SBarry Smith Collective 42836a3d2595SBarry Smith 42846a3d2595SBarry Smith Input Parameters: 42856a3d2595SBarry Smith + mat - the matrix 42866a3d2595SBarry Smith - v - matrix values, stored by row 42876a3d2595SBarry Smith 42886a3d2595SBarry Smith Level: intermediate 42896a3d2595SBarry Smith 4290a4bd8bc0SBarry Smith Notes: 42916a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 42926a3d2595SBarry Smith 4293a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4294a4bd8bc0SBarry Smith 42951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4296a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42976a3d2595SBarry Smith @*/ 4298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4299d71ae5a4SJacob Faibussowitsch { 43006a3d2595SBarry Smith PetscInt nnz, i, m; 43016a3d2595SBarry Smith PetscBool nooffprocentries; 43026a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43036a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43046a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43056a3d2595SBarry Smith PetscScalar *ad, *ao; 43066a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43076a3d2595SBarry Smith PetscInt ldi, Iii, md; 43086a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43096a3d2595SBarry Smith 43106a3d2595SBarry Smith PetscFunctionBegin; 43116a3d2595SBarry Smith m = mat->rmap->n; 43126a3d2595SBarry Smith 43136a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43146a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43156a3d2595SBarry Smith Iii = 0; 43166a3d2595SBarry Smith for (i = 0; i < m; i++) { 43176a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43186a3d2595SBarry Smith ldi = ld[i]; 43196a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43206a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43216a3d2595SBarry Smith ad += md; 4322810441c8SPierre Jolivet if (ao) { 4323810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4324810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43256a3d2595SBarry Smith ao += nnz - md; 4326810441c8SPierre Jolivet } 43276a3d2595SBarry Smith Iii += nnz; 43286a3d2595SBarry Smith } 43296a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43306a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43316a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43326a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43336a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43346a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43356a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43366a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43376a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43386a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43406a3d2595SBarry Smith } 43416a3d2595SBarry Smith 43425d83a8b1SBarry Smith /*@ 434311a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4344273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4345273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43462ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4347273d9f13SBarry Smith 4348d083f849SBarry Smith Collective 4349273d9f13SBarry Smith 4350273d9f13SBarry Smith Input Parameters: 4351273d9f13SBarry Smith + comm - MPI communicator 435211a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4353273d9f13SBarry Smith This value should be the same as the local size used in creating the 4354273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4355273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 435645f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4357273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 435811a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 435911a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4360273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4361273d9f13SBarry Smith (same value is used for all local rows) 4362273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4363273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43642ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4365273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4366273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4367273d9f13SBarry Smith submatrix (same value is used for all local rows). 4368273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4369273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43702ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4371273d9f13SBarry Smith structure. The size of this array is equal to the number 4372273d9f13SBarry Smith of local rows, i.e 'm'. 4373273d9f13SBarry Smith 4374273d9f13SBarry Smith Output Parameter: 4375273d9f13SBarry Smith . A - the matrix 4376273d9f13SBarry Smith 437727430b45SBarry Smith Options Database Keys: 437827430b45SBarry Smith + -mat_no_inode - Do not use inodes 437927430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 438027430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4381727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4382727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 438327430b45SBarry Smith 43842ef1f0ffSBarry Smith Level: intermediate 43852ef1f0ffSBarry Smith 438627430b45SBarry Smith Notes: 438777433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4388f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 438911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4390175b88e8SBarry Smith 439149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 439249a6f317SBarry Smith 43932ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 43942ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4395273d9f13SBarry Smith storage requirements for this matrix. 4396273d9f13SBarry Smith 439711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4398273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4399273d9f13SBarry Smith that argument. 4400273d9f13SBarry Smith 4401727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4402727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4403727bdf9bSBarry Smith 4404273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4405273d9f13SBarry Smith (possibly both). 4406273d9f13SBarry Smith 440733a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4408727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4409727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4410727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 441133a7c187SSatish Balay values corresponding to [m x N] submatrix. 4412273d9f13SBarry Smith 441333a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 441433a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4415df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 441633a7c187SSatish Balay 441733a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 441833a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 441933a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 442033a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 442133a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 442233a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44230b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44240b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 442533a7c187SSatish Balay 442633a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 442733a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 442833a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 442933a7c187SSatish Balay local matrix (a rectangular submatrix). 4430273d9f13SBarry Smith 44312ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4432273d9f13SBarry Smith 443397d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44342ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4435da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4436da57b5cdSKarl Rupp .vb 44372ef1f0ffSBarry Smith MatCreate(..., &A); 44382ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44392ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44402ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4441da57b5cdSKarl Rupp .ve 444297d05335SKris Buschelman 4443273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4444273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4445273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4446273d9f13SBarry Smith 44472920cce0SJacob Faibussowitsch Example Usage: 4448273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4449273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4450273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4451efc377ccSKarl Rupp as follows 4452273d9f13SBarry Smith 4453273d9f13SBarry Smith .vb 4454273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4455273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4456273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4457273d9f13SBarry Smith ------------------------------------- 4458273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4459273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4460273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4461273d9f13SBarry Smith ------------------------------------- 4462273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4463273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4464273d9f13SBarry Smith .ve 4465273d9f13SBarry Smith 4466da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4467273d9f13SBarry Smith 4468273d9f13SBarry Smith .vb 4469273d9f13SBarry Smith A B C 4470273d9f13SBarry Smith D E F 4471273d9f13SBarry Smith G H I 4472273d9f13SBarry Smith .ve 4473273d9f13SBarry Smith 4474273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4475273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4476273d9f13SBarry Smith 4477273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4478273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4479273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4480273d9f13SBarry Smith 4481273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4482273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4483273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4484273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 448527430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 44865163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4487273d9f13SBarry Smith 44882ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 44895163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 44905163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 44915163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 44925163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 44932ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4494273d9f13SBarry Smith .vb 449527430b45SBarry Smith proc0 dnz = 2, o_nz = 2 449627430b45SBarry Smith proc1 dnz = 3, o_nz = 2 449727430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4498273d9f13SBarry Smith .ve 44992ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4500273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4501273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4502273d9f13SBarry Smith 34 values. 4503273d9f13SBarry Smith 45042ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4505a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4506da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4507273d9f13SBarry Smith .vb 450827430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 450927430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 451027430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4511273d9f13SBarry Smith .ve 4512273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4513273d9f13SBarry Smith hence pre-allocation is perfect. 4514273d9f13SBarry Smith 45151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4516727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4517727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4518273d9f13SBarry Smith @*/ 4519d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4520d71ae5a4SJacob Faibussowitsch { 4521b1d57f15SBarry Smith PetscMPIInt size; 4522273d9f13SBarry Smith 4523273d9f13SBarry Smith PetscFunctionBegin; 45249566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4527273d9f13SBarry Smith if (size > 1) { 45289566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45299566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4530273d9f13SBarry Smith } else { 45319566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4533273d9f13SBarry Smith } 45343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4535273d9f13SBarry Smith } 4536195d93cdSBarry Smith 4537127ca0efSMatthew Knepley /*@C 45380ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4539127ca0efSMatthew Knepley 45402ef1f0ffSBarry Smith Not Collective 4541127ca0efSMatthew Knepley 4542127ca0efSMatthew Knepley Input Parameter: 454311a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4544127ca0efSMatthew Knepley 4545127ca0efSMatthew Knepley Output Parameters: 454611a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 454711a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45482ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4549127ca0efSMatthew Knepley 45500ab4885dSBarry Smith Level: intermediate 45510ab4885dSBarry Smith 455211a5261eSBarry Smith Note: 45532ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45542ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45552ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4556127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4557127ca0efSMatthew Knepley 4558ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4559127ca0efSMatthew Knepley @*/ 4560d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4561d71ae5a4SJacob Faibussowitsch { 4562195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 456304cf37c7SBarry Smith PetscBool flg; 4564b1d57f15SBarry Smith 4565195d93cdSBarry Smith PetscFunctionBegin; 45669566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 456728b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 456821e72a00SBarry Smith if (Ad) *Ad = a->A; 456921e72a00SBarry Smith if (Ao) *Ao = a->B; 457021e72a00SBarry Smith if (colmap) *colmap = a->garray; 45713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4572195d93cdSBarry Smith } 4573a2243be0SBarry Smith 4574d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4575d71ae5a4SJacob Faibussowitsch { 4576110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 45779b8102ccSHong Zhang PetscInt *indx; 4578110bb6e1SHong Zhang PetscScalar *values; 4579421ddf4dSJunchao Zhang MatType rootType; 45809b8102ccSHong Zhang 45819b8102ccSHong Zhang PetscFunctionBegin; 45829566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4583110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4584110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4585110bb6e1SHong Zhang 458648a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4587a22543b6SHong Zhang /* Check sum(n) = N */ 4588462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 458908401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4590a22543b6SHong Zhang 45919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 45929b8102ccSHong Zhang rstart -= m; 45939b8102ccSHong Zhang 4594d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 45959b8102ccSHong Zhang for (i = 0; i < m; i++) { 45969566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 45979566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 45989566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 45999b8102ccSHong Zhang } 46009b8102ccSHong Zhang 46019566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46039566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46049566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46059566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46069566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46089566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4609d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46109566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46119b8102ccSHong Zhang } 46129b8102ccSHong Zhang 4613110bb6e1SHong Zhang /* numeric phase */ 46149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46159b8102ccSHong Zhang for (i = 0; i < m; i++) { 46169566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46179b8102ccSHong Zhang Ii = i + rstart; 46189566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46199566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46209b8102ccSHong Zhang } 46219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4624c5d6d63eSBarry Smith } 4625c5d6d63eSBarry Smith 462649abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4627d71ae5a4SJacob Faibussowitsch { 462849abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 462951a7d1a8SHong Zhang 463051a7d1a8SHong Zhang PetscFunctionBegin; 46313ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46329566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46339566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46349566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46359566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46369566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46379566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46389566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46399566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46409566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46419566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46429566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46439566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46449566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46459566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464751a7d1a8SHong Zhang } 464851a7d1a8SHong Zhang 4649c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4650c6db04a5SJed Brown #include <petscbt.h> 46514ebed01fSBarry Smith 4652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4653d71ae5a4SJacob Faibussowitsch { 4654ce94432eSBarry Smith MPI_Comm comm; 465555d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4656b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 46576497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 46586497c311SBarry Smith PetscMPIInt proc, k; 4659b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 46606497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4661b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 466255d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 466355d1abb9SHong Zhang MPI_Status *status; 4664fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4665dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 466655d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4667776b82aeSLisandro Dalcin PetscContainer container; 466855d1abb9SHong Zhang 466955d1abb9SHong Zhang PetscFunctionBegin; 46709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 46719566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 46723c2c1871SHong Zhang 46739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 46749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 467555d1abb9SHong Zhang 46769566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 467728b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 46789566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 46799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4680fff043a9SJunchao Zhang aa = a_a; 4681bf0cc555SLisandro Dalcin 468255d1abb9SHong Zhang bi = merge->bi; 468355d1abb9SHong Zhang bj = merge->bj; 468455d1abb9SHong Zhang buf_ri = merge->buf_ri; 468555d1abb9SHong Zhang buf_rj = merge->buf_rj; 468655d1abb9SHong Zhang 46879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 46887a2fc3feSBarry Smith owners = merge->rowmap->range; 468955d1abb9SHong Zhang len_s = merge->len_s; 469055d1abb9SHong Zhang 469155d1abb9SHong Zhang /* send and recv matrix values */ 46929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 46939566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 469455d1abb9SHong Zhang 46959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 469655d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 469755d1abb9SHong Zhang if (!len_s[proc]) continue; 469855d1abb9SHong Zhang i = owners[proc]; 46996497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 470055d1abb9SHong Zhang k++; 470155d1abb9SHong Zhang } 470255d1abb9SHong Zhang 47039566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47049566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 470655d1abb9SHong Zhang 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 470955d1abb9SHong Zhang 471055d1abb9SHong Zhang /* insert mat values of mpimat */ 47119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47129566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 471355d1abb9SHong Zhang 471455d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 471555d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4716f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 471755d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4718a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 471955d1abb9SHong Zhang } 472055d1abb9SHong Zhang 472155d1abb9SHong Zhang /* set values of ba */ 47227a2fc3feSBarry Smith m = merge->rowmap->n; 472355d1abb9SHong Zhang for (i = 0; i < m; i++) { 472455d1abb9SHong Zhang arow = owners[rank] + i; 472555d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 472655d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 472855d1abb9SHong Zhang 472955d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 473055d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 473155d1abb9SHong Zhang aj = a->j + ai[arow]; 4732fff043a9SJunchao Zhang aa = a_a + ai[arow]; 473355d1abb9SHong Zhang nextaj = 0; 473455d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 473555d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 473655d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 473755d1abb9SHong Zhang } 473855d1abb9SHong Zhang } 473955d1abb9SHong Zhang 474055d1abb9SHong Zhang /* add received vals into ba */ 474155d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 474255d1abb9SHong Zhang /* i-th row */ 474355d1abb9SHong Zhang if (i == *nextrow[k]) { 474455d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4745f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4746f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 474755d1abb9SHong Zhang nextaj = 0; 474855d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 474955d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 475055d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 475155d1abb9SHong Zhang } 475255d1abb9SHong Zhang } 47539371c9d4SSatish Balay nextrow[k]++; 47549371c9d4SSatish Balay nextai[k]++; 475555d1abb9SHong Zhang } 475655d1abb9SHong Zhang } 47579566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 475855d1abb9SHong Zhang } 47599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 476255d1abb9SHong Zhang 47639566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47649566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47659566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47669566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 476955d1abb9SHong Zhang } 477038f152feSBarry Smith 4771d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4772d71ae5a4SJacob Faibussowitsch { 477355a3bba9SHong Zhang Mat B_mpi; 4774c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4775b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4776b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4777d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 47786497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4779c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4780b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 478155d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 478258cb9c82SHong Zhang MPI_Status *status; 47830298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4784be0fcf8dSHong Zhang PetscBT lnkbt; 478551a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4786776b82aeSLisandro Dalcin PetscContainer container; 478702c68681SHong Zhang 4788e5f2cdd8SHong Zhang PetscFunctionBegin; 47899566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 47903c2c1871SHong Zhang 479138f152feSBarry Smith /* make sure it is a PETSc comm */ 47929566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 47939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 479555d1abb9SHong Zhang 47969566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 47979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4798e5f2cdd8SHong Zhang 47996abd8857SHong Zhang /* determine row ownership */ 48009566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 480755d1abb9SHong Zhang 48087a2fc3feSBarry Smith m = merge->rowmap->n; 48097a2fc3feSBarry Smith owners = merge->rowmap->range; 48106abd8857SHong Zhang 48116abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48123e06a4e6SHong Zhang len_s = merge->len_s; 481351a7d1a8SHong Zhang 48142257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4815c2234fe3SHong Zhang merge->nsend = 0; 48166497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48172257cef7SHong Zhang len_si[proc] = 0; 48183e06a4e6SHong Zhang if (proc == rank) { 48196abd8857SHong Zhang len_s[proc] = 0; 48203e06a4e6SHong Zhang } else { 48216497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48226497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48233e06a4e6SHong Zhang } 48243e06a4e6SHong Zhang if (len_s[proc]) { 4825c2234fe3SHong Zhang merge->nsend++; 48262257cef7SHong Zhang nrows = 0; 48272257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48282257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48292257cef7SHong Zhang } 48306497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48312257cef7SHong Zhang len += len_si[proc]; 4832409913e3SHong Zhang } 483358cb9c82SHong Zhang } 4834409913e3SHong Zhang 48352257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48369566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48379566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4838671beff6SHong Zhang 48393e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48409566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48419566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 484202c68681SHong Zhang 48433e06a4e6SHong Zhang /* post the Isend of j-structure */ 48449566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48453e06a4e6SHong Zhang 48466497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4847409913e3SHong Zhang if (!len_s[proc]) continue; 484802c68681SHong Zhang i = owners[proc]; 48496497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 485051a7d1a8SHong Zhang k++; 485151a7d1a8SHong Zhang } 485251a7d1a8SHong Zhang 48533e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48549566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48559566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 485602c68681SHong Zhang 485702c68681SHong Zhang /* send and recv i-structure */ 48589566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48599566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 486002c68681SHong Zhang 48619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48623e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48636497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 486402c68681SHong Zhang if (!len_s[proc]) continue; 48653e06a4e6SHong Zhang /* form outgoing message for i-structure: 48663e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48673e06a4e6SHong Zhang [1:nrows]: row index (global) 48683e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48693e06a4e6SHong Zhang */ 48702257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 48713e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 48723e06a4e6SHong Zhang buf_si[0] = nrows; 48733e06a4e6SHong Zhang buf_si_i[0] = 0; 48743e06a4e6SHong Zhang nrows = 0; 48753e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48763e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 48773e06a4e6SHong Zhang if (anzi) { 48783e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 48793e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 48803e06a4e6SHong Zhang nrows++; 48813e06a4e6SHong Zhang } 48823e06a4e6SHong Zhang } 48836497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 488402c68681SHong Zhang k++; 48852257cef7SHong Zhang buf_si += len_si[proc]; 488602c68681SHong Zhang } 48872257cef7SHong Zhang 48889566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 48899566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 489002c68681SHong Zhang 48919566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 489248a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 48933e06a4e6SHong Zhang 48949566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 48959566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 48969566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 48979566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 48989566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 48999566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49009566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 490158cb9c82SHong Zhang 4902bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 490358cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 490558cb9c82SHong Zhang bi[0] = 0; 490658cb9c82SHong Zhang 4907be0fcf8dSHong Zhang /* create and initialize a linked list */ 4908be0fcf8dSHong Zhang nlnk = N + 1; 49099566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 491058cb9c82SHong Zhang 4911bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4912bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49139566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49142205254eSKarl Rupp 491558cb9c82SHong Zhang current_space = free_space; 491658cb9c82SHong Zhang 4917bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49189566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49191d79065fSBarry Smith 49203e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49212257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49223e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49233e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4924a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49253e06a4e6SHong Zhang } 49262257cef7SHong Zhang 4927d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4928bcc1bcd5SHong Zhang len = 0; 492958cb9c82SHong Zhang for (i = 0; i < m; i++) { 493058cb9c82SHong Zhang bnzi = 0; 493158cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 493258cb9c82SHong Zhang arow = owners[rank] + i; 493358cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 493458cb9c82SHong Zhang aj = a->j + ai[arow]; 49359566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 493658cb9c82SHong Zhang bnzi += nlnk; 493758cb9c82SHong Zhang /* add received col data into lnk */ 493851a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 493955d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49403e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49413e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49429566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49433e06a4e6SHong Zhang bnzi += nlnk; 49449371c9d4SSatish Balay nextrow[k]++; 49459371c9d4SSatish Balay nextai[k]++; 49463e06a4e6SHong Zhang } 494758cb9c82SHong Zhang } 4948bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 494958cb9c82SHong Zhang 495058cb9c82SHong Zhang /* if free space is not available, make more free space */ 495148a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 495258cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49539566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49549566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4955bcc1bcd5SHong Zhang 495658cb9c82SHong Zhang current_space->array += bnzi; 495758cb9c82SHong Zhang current_space->local_used += bnzi; 495858cb9c82SHong Zhang current_space->local_remaining -= bnzi; 495958cb9c82SHong Zhang 496058cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 496158cb9c82SHong Zhang } 4962bcc1bcd5SHong Zhang 49639566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4964bcc1bcd5SHong Zhang 49659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 49669566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49679566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4968409913e3SHong Zhang 4969bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 49709566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 49719566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 497254b84b50SHong Zhang if (n == PETSC_DECIDE) { 49739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 497454b84b50SHong Zhang } else { 49759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 497654b84b50SHong Zhang } 49779566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 49789566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 49799566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 4980d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 49819566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 498258cb9c82SHong Zhang 498390431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 49846abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 4985affca5deSHong Zhang merge->bi = bi; 4986affca5deSHong Zhang merge->bj = bj; 498702c68681SHong Zhang merge->buf_ri = buf_ri; 498802c68681SHong Zhang merge->buf_rj = buf_rj; 49890298fd71SBarry Smith merge->coi = NULL; 49900298fd71SBarry Smith merge->coj = NULL; 49910298fd71SBarry Smith merge->owners_co = NULL; 4992affca5deSHong Zhang 49939566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 4994bf0cc555SLisandro Dalcin 4995affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 49969566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 49979566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 499849abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 49999566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50009566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5001affca5deSHong Zhang *mpimat = B_mpi; 500238f152feSBarry Smith 50039566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5005e5f2cdd8SHong Zhang } 500625616d81SHong Zhang 5007cc4c1da9SBarry Smith /*@ 500811a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5009d4036a1aSHong Zhang matrices from each processor 5010d4036a1aSHong Zhang 5011d083f849SBarry Smith Collective 5012d4036a1aSHong Zhang 5013d4036a1aSHong Zhang Input Parameters: 5014d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5015d4036a1aSHong Zhang . seqmat - the input sequential matrices 501611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 501711a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 501811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5019d4036a1aSHong Zhang 5020d4036a1aSHong Zhang Output Parameter: 5021d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5022d4036a1aSHong Zhang 5023d4036a1aSHong Zhang Level: advanced 5024d4036a1aSHong Zhang 502511a5261eSBarry Smith Note: 5026d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5027d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5028b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50292ef1f0ffSBarry Smith 50301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5031d4036a1aSHong Zhang @*/ 5032d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5033d71ae5a4SJacob Faibussowitsch { 50347e63b356SHong Zhang PetscMPIInt size; 503555d1abb9SHong Zhang 503655d1abb9SHong Zhang PetscFunctionBegin; 50379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50387e63b356SHong Zhang if (size == 1) { 50399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50407e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50419566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50427e63b356SHong Zhang } else { 50439566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50447e63b356SHong Zhang } 50459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50477e63b356SHong Zhang } 50489566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 504948a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50509566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50519566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 505355d1abb9SHong Zhang } 50544ebed01fSBarry Smith 5055bc08b0f1SBarry Smith /*@ 50562920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50578a9c020eSBarry Smith 50588a9c020eSBarry Smith Not Collective 50598a9c020eSBarry Smith 50602fe279fdSBarry Smith Input Parameter: 506120f4b53cSBarry Smith . A - the matrix 50628a9c020eSBarry Smith 50638a9c020eSBarry Smith Output Parameter: 50648a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50658a9c020eSBarry Smith 50668a9c020eSBarry Smith Level: developer 50678a9c020eSBarry Smith 50688a9c020eSBarry Smith Notes: 50692920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 50702920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 50712920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 50722920cce0SJacob Faibussowitsch 507311a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 50748a9c020eSBarry Smith 50752920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 50762920cce0SJacob Faibussowitsch 507711a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 50788a9c020eSBarry Smith 50791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 50808a9c020eSBarry Smith @*/ 5081d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5082d71ae5a4SJacob Faibussowitsch { 50838a9c020eSBarry Smith PetscBool mpi; 50848a9c020eSBarry Smith 50858a9c020eSBarry Smith PetscFunctionBegin; 50868a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 50878a9c020eSBarry Smith if (mpi) { 50888a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 50898a9c020eSBarry Smith } else { 50908a9c020eSBarry Smith *A_loc = A; 50918a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 50928a9c020eSBarry Smith } 50933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50948a9c020eSBarry Smith } 50958a9c020eSBarry Smith 50968a9c020eSBarry Smith /*@ 50972920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 509825616d81SHong Zhang 509932fba14fSHong Zhang Not Collective 510025616d81SHong Zhang 510125616d81SHong Zhang Input Parameters: 510225616d81SHong Zhang + A - the matrix 510311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 510425616d81SHong Zhang 510525616d81SHong Zhang Output Parameter: 510625616d81SHong Zhang . A_loc - the local sequential matrix generated 510725616d81SHong Zhang 510825616d81SHong Zhang Level: developer 510925616d81SHong Zhang 511077c65a98SStefano Zampini Notes: 51112920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51122920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51132920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51142920cce0SJacob Faibussowitsch 511511a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51168a9c020eSBarry Smith 51172920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51182920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51192920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51202920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 512177c65a98SStefano Zampini 51221cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 512325616d81SHong Zhang @*/ 5124d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5125d71ae5a4SJacob Faibussowitsch { 512601b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5127b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5128b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5129ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5130ce496241SStefano Zampini PetscScalar *ca, *cam; 513177c65a98SStefano Zampini PetscMPIInt size; 5132d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51335a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51348661ff28SBarry Smith PetscBool match; 513525616d81SHong Zhang 513625616d81SHong Zhang PetscFunctionBegin; 51379566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 513828b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 514077c65a98SStefano Zampini if (size == 1) { 514177c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51429566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 514377c65a98SStefano Zampini *A_loc = mpimat->A; 514477c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51459566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 514677c65a98SStefano Zampini } 51473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 514877c65a98SStefano Zampini } 514970a9ba44SHong Zhang 51509566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5151f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5152f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 51539371c9d4SSatish Balay ai = a->i; 51549371c9d4SSatish Balay aj = a->j; 51559371c9d4SSatish Balay bi = b->i; 51569371c9d4SSatish Balay bj = b->j; 51579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5159ce496241SStefano Zampini aa = aav; 5160ce496241SStefano Zampini ba = bav; 516101b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5163dea91ad1SHong Zhang ci[0] = 0; 5164ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5167dea91ad1SHong Zhang k = 0; 516801b7ae99SHong Zhang for (i = 0; i < am; i++) { 51695a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 51705a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 517101b7ae99SHong Zhang /* off-diagonal portion of A */ 51725a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 51735a7d977cSHong Zhang col = cmap[*bj]; 51745a7d977cSHong Zhang if (col >= cstart) break; 51759371c9d4SSatish Balay cj[k] = col; 51769371c9d4SSatish Balay bj++; 51775a7d977cSHong Zhang ca[k++] = *ba++; 51785a7d977cSHong Zhang } 51795a7d977cSHong Zhang /* diagonal portion of A */ 51805a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 51815a7d977cSHong Zhang cj[k] = cstart + *aj++; 51825a7d977cSHong Zhang ca[k++] = *aa++; 51835a7d977cSHong Zhang } 51845a7d977cSHong Zhang /* off-diagonal portion of A */ 51855a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 51865a7d977cSHong Zhang cj[k] = cmap[*bj++]; 51875a7d977cSHong Zhang ca[k++] = *ba++; 51885a7d977cSHong Zhang } 518925616d81SHong Zhang } 5190dea91ad1SHong Zhang /* put together the new matrix */ 51919566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5192dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5193dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5194dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5195e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5196e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5197dea91ad1SHong Zhang mat->nonew = 0; 51985a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 51995a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5200fff043a9SJunchao Zhang ci = mat->i; 5201fff043a9SJunchao Zhang cj = mat->j; 52029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52035a7d977cSHong Zhang for (i = 0; i < am; i++) { 52045a7d977cSHong Zhang /* off-diagonal portion of A */ 52055a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52065a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52075a7d977cSHong Zhang col = cmap[*bj]; 52085a7d977cSHong Zhang if (col >= cstart) break; 52099371c9d4SSatish Balay *cam++ = *ba++; 52109371c9d4SSatish Balay bj++; 52115a7d977cSHong Zhang } 52125a7d977cSHong Zhang /* diagonal portion of A */ 5213ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5214a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52155a7d977cSHong Zhang /* off-diagonal portion of A */ 5216f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52179371c9d4SSatish Balay *cam++ = *ba++; 52189371c9d4SSatish Balay bj++; 5219f33d1a9aSHong Zhang } 52205a7d977cSHong Zhang } 52219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 522298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522725616d81SHong Zhang } 522825616d81SHong Zhang 5229ed502f03SStefano Zampini /*@ 523011a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52314cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5232ed502f03SStefano Zampini 5233ed502f03SStefano Zampini Not Collective 5234ed502f03SStefano Zampini 5235ed502f03SStefano Zampini Input Parameters: 5236ed502f03SStefano Zampini + A - the matrix 523711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5238ed502f03SStefano Zampini 5239d8d19677SJose E. Roman Output Parameters: 52402ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5241ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5242ed502f03SStefano Zampini 5243ed502f03SStefano Zampini Level: developer 5244ed502f03SStefano Zampini 524511a5261eSBarry Smith Note: 52462ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52474cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5248ed502f03SStefano Zampini 52491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5250ed502f03SStefano Zampini @*/ 5251d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5252d71ae5a4SJacob Faibussowitsch { 5253ed502f03SStefano Zampini Mat Ao, Ad; 5254ed502f03SStefano Zampini const PetscInt *cmap; 5255ed502f03SStefano Zampini PetscMPIInt size; 5256ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5257ed502f03SStefano Zampini 5258ed502f03SStefano Zampini PetscFunctionBegin; 52599566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5261ed502f03SStefano Zampini if (size == 1) { 5262ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5264ed502f03SStefano Zampini *A_loc = Ad; 5265ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52669566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5267ed502f03SStefano Zampini } 52689566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5270ed502f03SStefano Zampini } 52719566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 52729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5273ed502f03SStefano Zampini if (f) { 52749566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5275ed502f03SStefano Zampini } else { 5276ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5277ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5278ed502f03SStefano Zampini Mat_SeqAIJ *c; 5279ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5280ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5281ed502f03SStefano Zampini PetscInt *ci, *cj; 5282ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5283ed502f03SStefano Zampini PetscScalar *ca; 5284ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5285ed502f03SStefano Zampini 52869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 52879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 52889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 52899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5290ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5291ed502f03SStefano Zampini PetscInt k; 52929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 52939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 52949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5295ed502f03SStefano Zampini ci[0] = 0; 5296ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5297ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5298ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5299ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5300ed502f03SStefano Zampini /* diagonal portion of A */ 5301ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5302ed502f03SStefano Zampini cj[k] = *aj++; 5303ed502f03SStefano Zampini ca[k] = *aa++; 5304ed502f03SStefano Zampini } 5305ed502f03SStefano Zampini /* off-diagonal portion of A */ 5306ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5307ed502f03SStefano Zampini cj[k] = dn + *bj++; 5308ed502f03SStefano Zampini ca[k] = *ba++; 5309ed502f03SStefano Zampini } 5310ed502f03SStefano Zampini } 5311ed502f03SStefano Zampini /* put together the new matrix */ 53129566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5313ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5314ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5315ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5316ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5317ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5318ed502f03SStefano Zampini c->nonew = 0; 53199566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5320ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5322ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5323ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5324ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5325ed502f03SStefano Zampini /* diagonal portion of A */ 5326ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5327ed502f03SStefano Zampini /* off-diagonal portion of A */ 5328ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5329ed502f03SStefano Zampini } 53309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 533198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5334ed502f03SStefano Zampini if (glob) { 5335ed502f03SStefano Zampini PetscInt cst, *gidx; 5336ed502f03SStefano Zampini 53379566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5339ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5340ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53419566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5342ed502f03SStefano Zampini } 5343ed502f03SStefano Zampini } 53449566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5346ed502f03SStefano Zampini } 5347ed502f03SStefano Zampini 534832fba14fSHong Zhang /*@C 534911a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 535032fba14fSHong Zhang 535132fba14fSHong Zhang Not Collective 535232fba14fSHong Zhang 535332fba14fSHong Zhang Input Parameters: 535432fba14fSHong Zhang + A - the matrix 535511a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 535620f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 535720f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 535832fba14fSHong Zhang 535932fba14fSHong Zhang Output Parameter: 536032fba14fSHong Zhang . A_loc - the local sequential matrix generated 536132fba14fSHong Zhang 536232fba14fSHong Zhang Level: developer 536332fba14fSHong Zhang 53641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 536532fba14fSHong Zhang @*/ 5366d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5367d71ae5a4SJacob Faibussowitsch { 536832fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 536932fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 537032fba14fSHong Zhang IS isrowa, iscola; 537132fba14fSHong Zhang Mat *aloc; 53724a2b5492SBarry Smith PetscBool match; 537332fba14fSHong Zhang 537432fba14fSHong Zhang PetscFunctionBegin; 53759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 537628b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 53779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 537832fba14fSHong Zhang if (!row) { 53799371c9d4SSatish Balay start = A->rmap->rstart; 53809371c9d4SSatish Balay end = A->rmap->rend; 53819566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 538232fba14fSHong Zhang } else { 538332fba14fSHong Zhang isrowa = *row; 538432fba14fSHong Zhang } 538532fba14fSHong Zhang if (!col) { 5386d0f46423SBarry Smith start = A->cmap->rstart; 538732fba14fSHong Zhang cmap = a->garray; 5388d0f46423SBarry Smith nzA = a->A->cmap->n; 5389d0f46423SBarry Smith nzB = a->B->cmap->n; 53909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 539132fba14fSHong Zhang ncols = 0; 539232fba14fSHong Zhang for (i = 0; i < nzB; i++) { 539332fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 539432fba14fSHong Zhang else break; 539532fba14fSHong Zhang } 539632fba14fSHong Zhang imark = i; 539732fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 539832fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 53999566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 540032fba14fSHong Zhang } else { 540132fba14fSHong Zhang iscola = *col; 540232fba14fSHong Zhang } 540332fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 540532fba14fSHong Zhang aloc[0] = *A_loc; 540632fba14fSHong Zhang } 54079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5408109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5410109e0772SStefano Zampini } 541132fba14fSHong Zhang *A_loc = aloc[0]; 54129566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 541348a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 541448a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 541732fba14fSHong Zhang } 541832fba14fSHong Zhang 54195c65b9ecSFande Kong /* 54205c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54215c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54225c65b9ecSFande Kong * on a global size. 54235c65b9ecSFande Kong * */ 5424ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5425d71ae5a4SJacob Faibussowitsch { 54265c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5427f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5428131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5429131c27b5Sprj- PetscMPIInt owner; 54305c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54315c65b9ecSFande Kong const PetscInt *lrowindices; 54325c65b9ecSFande Kong PetscSF sf, osf; 54335c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54345c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54355c65b9ecSFande Kong MPI_Comm comm; 54365c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5437fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54385c65b9ecSFande Kong 54395c65b9ecSFande Kong PetscFunctionBegin; 54409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54415c65b9ecSFande Kong /* plocalsize is the number of roots 54425c65b9ecSFande Kong * nrows is the number of leaves 54435c65b9ecSFande Kong * */ 54449566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54485c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54495c65b9ecSFande Kong /* Find a remote index and an owner for a row 54505c65b9ecSFande Kong * The row could be local or remote 54515c65b9ecSFande Kong * */ 545234bcad68SFande Kong owner = 0; 545334bcad68SFande Kong lidx = 0; 54549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54555c65b9ecSFande Kong iremote[i].index = lidx; 54565c65b9ecSFande Kong iremote[i].rank = owner; 54575c65b9ecSFande Kong } 54585c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54599566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5460f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54615c65b9ecSFande Kong * offsets 54625c65b9ecSFande Kong * */ 54639566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54649566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54659566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5466bc8e477aSFande Kong 54679566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54689566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54699566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 54705c65b9ecSFande Kong roffsets[0] = 0; 54715c65b9ecSFande Kong roffsets[1] = 0; 54725c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 54734cf0e950SBarry Smith /* diagonal */ 54745c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 54754cf0e950SBarry Smith /* off-diagonal */ 54765c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 54775c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 54785c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 54795c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 54805c65b9ecSFande Kong } 54819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 54829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 54835c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 54849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 54899566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 54909566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 54915c65b9ecSFande Kong dntotalcols = 0; 54925c65b9ecSFande Kong ontotalcols = 0; 5493bc8e477aSFande Kong ncol = 0; 54945c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54955c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5496bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 54974cf0e950SBarry Smith /* diagonal */ 54985c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 54994cf0e950SBarry Smith /* off-diagonal */ 55005c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55015c65b9ecSFande Kong } 55025c65b9ecSFande Kong /* We do not need to figure the right number of columns 55035c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55045c65b9ecSFande Kong * */ 55059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55069566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55079566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55085c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55094cf0e950SBarry Smith /* diagonal */ 55109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55114cf0e950SBarry Smith /* off-diagonal */ 55129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55134cf0e950SBarry Smith /* diagonal */ 55149566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55154cf0e950SBarry Smith /* off-diagonal */ 55169566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55175c65b9ecSFande Kong dntotalcols = 0; 55185c65b9ecSFande Kong ontotalcols = 0; 55195c65b9ecSFande Kong ntotalcols = 0; 55205c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 552134bcad68SFande Kong owner = 0; 55229566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55235c65b9ecSFande Kong /* Set iremote for diag matrix */ 55245c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55255c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55265c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55275c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55285c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55295c65b9ecSFande Kong } 55304cf0e950SBarry Smith /* off-diagonal */ 55315c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55325c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55335c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55345c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55355c65b9ecSFande Kong } 55365c65b9ecSFande Kong } 55379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55389566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55399566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55409566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55415c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55425c65b9ecSFande Kong * Diag matrix 55435c65b9ecSFande Kong * */ 55449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55459566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55469566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55475c65b9ecSFande Kong 55489566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55494cf0e950SBarry Smith /* off-diagonal */ 55509566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55554cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55589566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55595c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55605c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55625c65b9ecSFande Kong /* We want P_oth store global indices */ 55639566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55645c65b9ecSFande Kong /* Use memory scalable approach */ 55659566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55669566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55695c65b9ecSFande Kong /* Convert back to local indices */ 55705c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 55719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55725c65b9ecSFande Kong nout = 0; 55739566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 557408401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 55759566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 55765c65b9ecSFande Kong /* Exchange values */ 55779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 55809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 55815c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 55825c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 55839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 55849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 55855c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 55869566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 55879566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 55889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 55903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55915c65b9ecSFande Kong } 55925c65b9ecSFande Kong 55935c65b9ecSFande Kong /* 55945c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 55955c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 55965c65b9ecSFande Kong * */ 5597d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5598d71ae5a4SJacob Faibussowitsch { 55995c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5600bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5601bc8e477aSFande Kong IS rows, map; 5602bc8e477aSFande Kong PetscHMapI hamp; 5603bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56045c65b9ecSFande Kong MPI_Comm comm; 56055c65b9ecSFande Kong PetscSF sf, osf; 5606bc8e477aSFande Kong PetscBool has; 56075c65b9ecSFande Kong 56085c65b9ecSFande Kong PetscFunctionBegin; 56099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56115c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56125c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56135c65b9ecSFande Kong * */ 56145c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56155c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5616eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56179566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5618bc8e477aSFande Kong count = 0; 5619bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5620bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5621bc8e477aSFande Kong key = a->garray[i] / dof; 56229566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5623bc8e477aSFande Kong if (!has) { 5624bc8e477aSFande Kong mapping[i] = count; 56259566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5626bc8e477aSFande Kong } else { 5627bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5628bc8e477aSFande Kong mapping[i] = count - 1; 56295c65b9ecSFande Kong } 5630bc8e477aSFande Kong } 56319566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56329566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5633eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56349566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56355c65b9ecSFande Kong off = 0; 56369566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56379566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56389566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56405c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56419566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56429566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56465c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56475c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 564835cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5649fff043a9SJunchao Zhang */ 5650fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5651fff043a9SJunchao Zhang 56529566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 565408401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56555c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56565c65b9ecSFande Kong /* Update values in place */ 56579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56656718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56685c65b9ecSFande Kong } 56695c65b9ecSFande Kong 567025616d81SHong Zhang /*@C 567120f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 567225616d81SHong Zhang 5673c3339decSBarry Smith Collective 567425616d81SHong Zhang 567525616d81SHong Zhang Input Parameters: 567611a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 567711a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 567811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 567925616d81SHong Zhang 5680f1a722f8SMatthew G. Knepley Output Parameters: 568127430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 568227430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5683f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 568425616d81SHong Zhang 568525616d81SHong Zhang Level: developer 568625616d81SHong Zhang 568720f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 568825616d81SHong Zhang @*/ 5689d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5690d71ae5a4SJacob Faibussowitsch { 5691899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5692b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 569325616d81SHong Zhang IS isrowb, iscolb; 56940298fd71SBarry Smith Mat *bseq = NULL; 569525616d81SHong Zhang 569625616d81SHong Zhang PetscFunctionBegin; 569720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 569820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 56999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 570025616d81SHong Zhang 570125616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5702d0f46423SBarry Smith start = A->cmap->rstart; 570325616d81SHong Zhang cmap = a->garray; 5704d0f46423SBarry Smith nzA = a->A->cmap->n; 5705d0f46423SBarry Smith nzB = a->B->cmap->n; 57069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 570725616d81SHong Zhang ncols = 0; 57080390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 570925616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 571025616d81SHong Zhang else break; 571125616d81SHong Zhang } 571225616d81SHong Zhang imark = i; 57130390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57140390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57159566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57169566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 571725616d81SHong Zhang } else { 571808401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57199371c9d4SSatish Balay isrowb = *rowb; 57209371c9d4SSatish Balay iscolb = *colb; 57219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 572225616d81SHong Zhang bseq[0] = *B_seq; 572325616d81SHong Zhang } 57249566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 572525616d81SHong Zhang *B_seq = bseq[0]; 57269566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 572725616d81SHong Zhang if (!rowb) { 57289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 572925616d81SHong Zhang } else { 573025616d81SHong Zhang *rowb = isrowb; 573125616d81SHong Zhang } 573225616d81SHong Zhang if (!colb) { 57339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 573425616d81SHong Zhang } else { 573525616d81SHong Zhang *colb = iscolb; 573625616d81SHong Zhang } 57379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 573925616d81SHong Zhang } 5740429d309bSHong Zhang 5741f8487c73SHong Zhang /* 574227430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 574301b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5744429d309bSHong Zhang 5745c3339decSBarry Smith Collective 5746429d309bSHong Zhang 5747429d309bSHong Zhang Input Parameters: 574827430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 574927430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5750429d309bSHong Zhang 5751429d309bSHong Zhang Output Parameter: 57520298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57530298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57540298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5755598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5756429d309bSHong Zhang 575711a5261eSBarry Smith Developer Note: 575811a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57596eb45d04SBarry Smith for this matrix. This is not desirable.. 57606eb45d04SBarry Smith 5761429d309bSHong Zhang Level: developer 5762429d309bSHong Zhang 5763f8487c73SHong Zhang */ 57646497c311SBarry Smith 5765d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5766d71ae5a4SJacob Faibussowitsch { 5767899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 57684b8d542aSHong Zhang VecScatter ctx; 5769ce94432eSBarry Smith MPI_Comm comm; 57703515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 57716497c311SBarry Smith PetscMPIInt nrecvs, nsends; 57723515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5773277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 57746497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5775277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5776ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5777ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5778429d309bSHong Zhang 5779429d309bSHong Zhang PetscFunctionBegin; 57809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5782a7c7454dSHong Zhang 578320f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 578420f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 57869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5787a6b2eed2SHong Zhang 5788ec07b8f8SHong Zhang if (size == 1) { 5789ec07b8f8SHong Zhang startsj_s = NULL; 5790ec07b8f8SHong Zhang bufa_ptr = NULL; 579152f7967eSHong Zhang *B_oth = NULL; 57923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5793ec07b8f8SHong Zhang } 5794ec07b8f8SHong Zhang 5795fa83eaafSHong Zhang ctx = a->Mvctx; 57964b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 57974b8d542aSHong Zhang 57989566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 57993515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58009566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58019566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5803ddea5d60SJunchao Zhang rwaits = reqs; 58048e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5805429d309bSHong Zhang 5806b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5807429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5808a6b2eed2SHong Zhang /* i-array */ 5809a6b2eed2SHong Zhang /* post receives */ 58109566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5811a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 581274268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5813e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58146497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5815429d309bSHong Zhang } 5816a6b2eed2SHong Zhang 5817a6b2eed2SHong Zhang /* pack the outgoing message */ 58189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58192205254eSKarl Rupp 58202205254eSKarl Rupp sstartsj[0] = 0; 58212205254eSKarl Rupp rstartsj[0] = 0; 5822a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58233515ee7fSJunchao Zhang if (nsends) { 58243515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58263515ee7fSJunchao Zhang } 5827a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58283515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5829e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 583087025532SHong Zhang for (j = 0; j < nrows; j++) { 5831d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5832e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58339566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58342205254eSKarl Rupp 5835e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58362205254eSKarl Rupp 5837e42f35eeSHong Zhang len += ncols; 58389566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5839e42f35eeSHong Zhang } 5840a6b2eed2SHong Zhang k++; 5841429d309bSHong Zhang } 58426497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58432205254eSKarl Rupp 5844dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5845429d309bSHong Zhang } 584687025532SHong Zhang /* recvs and sends of i-array are completed */ 58479566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58489566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5849e42f35eeSHong Zhang 5850a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 58519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 58529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5853a6b2eed2SHong Zhang 585487025532SHong Zhang /* create i-array of B_oth */ 58559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 58562205254eSKarl Rupp 585787025532SHong Zhang b_othi[0] = 0; 5858a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5859a6b2eed2SHong Zhang k = 0; 5860a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58613515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58623515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 586387025532SHong Zhang for (j = 0; j < nrows; j++) { 586487025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58659566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5866f91af8c7SBarry Smith k++; 5867a6b2eed2SHong Zhang } 5868dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5869a6b2eed2SHong Zhang } 58709566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5871a6b2eed2SHong Zhang 58726aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 58739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 58749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5875a6b2eed2SHong Zhang 587687025532SHong Zhang /* j-array */ 5877a6b2eed2SHong Zhang /* post receives of j-array */ 5878a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587987025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 58806497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5881a6b2eed2SHong Zhang } 5882e42f35eeSHong Zhang 5883e42f35eeSHong Zhang /* pack the outgoing message j-array */ 58843515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5885a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5886e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5887a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 588887025532SHong Zhang for (j = 0; j < nrows; j++) { 5889d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5890e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 58919566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5892ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 58939566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5894e42f35eeSHong Zhang } 589587025532SHong Zhang } 58966497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 589787025532SHong Zhang } 589887025532SHong Zhang 589987025532SHong Zhang /* recvs and sends of j-array are completed */ 59009566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 590187025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5902b7f45c76SHong Zhang sstartsj = *startsj_s; 59031d79065fSBarry Smith rstartsj = *startsj_r; 590487025532SHong Zhang bufa = *bufa_ptr; 59059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5906ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 590787025532SHong Zhang 590887025532SHong Zhang /* a-array */ 590987025532SHong Zhang /* post receives of a-array */ 591087025532SHong Zhang for (i = 0; i < nrecvs; i++) { 591187025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59126497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 591387025532SHong Zhang } 5914e42f35eeSHong Zhang 5915e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59163515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 591787025532SHong Zhang for (i = 0; i < nsends; i++) { 5918e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 591987025532SHong Zhang bufA = bufa + sstartsj[i]; 592087025532SHong Zhang for (j = 0; j < nrows; j++) { 5921d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5922e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59239566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5924ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59259566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5926e42f35eeSHong Zhang } 5927a6b2eed2SHong Zhang } 59286497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5929a6b2eed2SHong Zhang } 593087025532SHong Zhang /* recvs and sends of a-array are completed */ 59319566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59329566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5933a6b2eed2SHong Zhang 593487025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5935dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5936dd460d27SBarry Smith 5937a6b2eed2SHong Zhang /* put together the new matrix */ 59389566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5939a6b2eed2SHong Zhang 5940a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5941a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 594287025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5943e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5944e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 594587025532SHong Zhang b_oth->nonew = 0; 5946a6b2eed2SHong Zhang 59479566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5948b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59499566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59509566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5951dea91ad1SHong Zhang } else { 5952b7f45c76SHong Zhang *startsj_s = sstartsj; 59531d79065fSBarry Smith *startsj_r = rstartsj; 595487025532SHong Zhang *bufa_ptr = bufa; 595587025532SHong Zhang } 5956fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5958dea91ad1SHong Zhang } 59593515ee7fSJunchao Zhang 59609566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59619566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5964429d309bSHong Zhang } 5965ccd8e176SBarry Smith 5966cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5967cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5968ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59699779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5970a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5971191b95cbSRichard Tran Mills #endif 5972ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 5973cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 59745d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5975cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 59765d7652ecSHong Zhang #endif 5977d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5978d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 5979d24d4204SJose E. Roman #endif 598063c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 598163c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 598263c07aadSStefano Zampini #endif 59833338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 59843338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 59853338378cSStefano Zampini #endif 5986d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 5987d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 5988d5e393b6SSuyash Tandon #endif 59893d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 59903d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 59913d0639e7SStefano Zampini #endif 5992d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 59934222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 59944222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 599517667f90SBarry Smith 5996fc4dec0aSBarry Smith /* 5997fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 5998fc4dec0aSBarry Smith 5999fc4dec0aSBarry Smith n p p 60002da392ccSBarry Smith [ ] [ ] [ ] 60012da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60022da392ccSBarry Smith [ ] [ ] [ ] 6003fc4dec0aSBarry Smith 6004fc4dec0aSBarry Smith */ 6005d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6006d71ae5a4SJacob Faibussowitsch { 6007fc4dec0aSBarry Smith Mat At, Bt, Ct; 6008fc4dec0aSBarry Smith 6009fc4dec0aSBarry Smith PetscFunctionBegin; 60109566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60119566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6012fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60157fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60169566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6019fc4dec0aSBarry Smith } 6020fc4dec0aSBarry Smith 6021d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6022d71ae5a4SJacob Faibussowitsch { 60236718818eSStefano Zampini PetscBool cisdense; 6024fc4dec0aSBarry Smith 6025fc4dec0aSBarry Smith PetscFunctionBegin; 602608401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60289566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6029d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 603048a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60319566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6032f75ecaa4SHong Zhang 60334222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6035fc4dec0aSBarry Smith } 6036fc4dec0aSBarry Smith 6037d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6038d71ae5a4SJacob Faibussowitsch { 60394222ddf1SHong Zhang Mat_Product *product = C->product; 60404222ddf1SHong Zhang Mat A = product->A, B = product->B; 6041fc4dec0aSBarry Smith 6042fc4dec0aSBarry Smith PetscFunctionBegin; 604320f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 604420f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60454222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60464222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6048fc4dec0aSBarry Smith } 6049fc4dec0aSBarry Smith 6050d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6051d71ae5a4SJacob Faibussowitsch { 60524222ddf1SHong Zhang Mat_Product *product = C->product; 60534222ddf1SHong Zhang 60544222ddf1SHong Zhang PetscFunctionBegin; 605548a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60574222ddf1SHong Zhang } 6058394ed5ebSJunchao Zhang 605927430b45SBarry Smith /* 606027430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6061394ed5ebSJunchao Zhang 6062394ed5ebSJunchao Zhang Input Parameters: 6063394ed5ebSJunchao Zhang 6064651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6065651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6066394ed5ebSJunchao Zhang 6067158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6068394ed5ebSJunchao Zhang 6069394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6070394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6071394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6072394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6073394ed5ebSJunchao Zhang 6074394ed5ebSJunchao Zhang Similar for Set2. 6075394ed5ebSJunchao Zhang 6076394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6077394ed5ebSJunchao Zhang 6078158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6079394ed5ebSJunchao Zhang 6080394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6081394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6082394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6083394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6084394ed5ebSJunchao Zhang */ 6085d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6086d71ae5a4SJacob Faibussowitsch { 6087394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6088394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6089394ed5ebSJunchao Zhang 6090394ed5ebSJunchao Zhang PetscFunctionBegin; 60919566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6092394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6093394ed5ebSJunchao Zhang i[0] = 0; 6094394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6095394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6096394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6097394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6098394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6099394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6100394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6101394ed5ebSJunchao Zhang j[t] = j1[b1]; 6102394ed5ebSJunchao Zhang imap1[t1] = t; 6103394ed5ebSJunchao Zhang imap2[t2] = t; 6104394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6105394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61069371c9d4SSatish Balay t1++; 61079371c9d4SSatish Balay t2++; 61089371c9d4SSatish Balay t++; 6109394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6110394ed5ebSJunchao Zhang j[t] = j1[b1]; 6111394ed5ebSJunchao Zhang imap1[t1] = t; 6112394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61139371c9d4SSatish Balay t1++; 61149371c9d4SSatish Balay t++; 6115394ed5ebSJunchao Zhang } else { 6116394ed5ebSJunchao Zhang j[t] = j2[b2]; 6117394ed5ebSJunchao Zhang imap2[t2] = t; 6118394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61199371c9d4SSatish Balay t2++; 61209371c9d4SSatish Balay t++; 6121394ed5ebSJunchao Zhang } 6122394ed5ebSJunchao Zhang } 6123394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6124394ed5ebSJunchao Zhang while (b1 < e1) { 6125394ed5ebSJunchao Zhang j[t] = j1[b1]; 6126394ed5ebSJunchao Zhang imap1[t1] = t; 6127394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61289371c9d4SSatish Balay t1++; 61299371c9d4SSatish Balay t++; 6130394ed5ebSJunchao Zhang } 6131394ed5ebSJunchao Zhang while (b2 < e2) { 6132394ed5ebSJunchao Zhang j[t] = j2[b2]; 6133394ed5ebSJunchao Zhang imap2[t2] = t; 6134394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61359371c9d4SSatish Balay t2++; 61369371c9d4SSatish Balay t++; 6137394ed5ebSJunchao Zhang } 61386497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6139394ed5ebSJunchao Zhang } 61403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6141394ed5ebSJunchao Zhang } 6142394ed5ebSJunchao Zhang 614327430b45SBarry Smith /* 614427430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6145394ed5ebSJunchao Zhang 6146394ed5ebSJunchao Zhang Input Parameters: 6147394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6148394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6149394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6150394ed5ebSJunchao Zhang 6151394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6152394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6153394ed5ebSJunchao Zhang 6154394ed5ebSJunchao Zhang Output Parameters: 6155394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6156394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6157394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6158394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6159394ed5ebSJunchao Zhang 6160394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6161158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6162158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6163394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6164394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6165394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6166394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6167394ed5ebSJunchao Zhang 6168394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6169394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6170394ed5ebSJunchao Zhang 6171394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6172394ed5ebSJunchao Zhang 6173158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6174394ed5ebSJunchao Zhang */ 6175d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6176d71ae5a4SJacob Faibussowitsch { 6177394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6178394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6179394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6180394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6181394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6182394ed5ebSJunchao Zhang 6183394ed5ebSJunchao Zhang PetscFunctionBegin; 61849566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 61859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6186394ed5ebSJunchao Zhang m = rend - rstart; 6187394ed5ebSJunchao Zhang 6188651b1cf9SStefano Zampini /* Skip negative rows */ 6189651b1cf9SStefano Zampini for (k = 0; k < n; k++) 61909371c9d4SSatish Balay if (i[k] >= 0) break; 6191394ed5ebSJunchao Zhang 6192394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6193394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6194394ed5ebSJunchao Zhang */ 6195394ed5ebSJunchao Zhang while (k < n) { 6196394ed5ebSJunchao Zhang row = i[k]; 6197394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 61989371c9d4SSatish Balay for (s = k; s < n; s++) 61999371c9d4SSatish Balay if (i[s] != row) break; 6200651b1cf9SStefano Zampini 62011690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6202394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62031690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 620454c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6205394ed5ebSJunchao Zhang } 62069566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6207158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6208394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6209394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6210394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6211394ed5ebSJunchao Zhang 6212394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6213394ed5ebSJunchao Zhang Atot += mid - k; 6214394ed5ebSJunchao Zhang Btot += s - mid; 6215394ed5ebSJunchao Zhang 6216651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6217394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6218394ed5ebSJunchao Zhang col = j[p]; 62199371c9d4SSatish Balay do { 62201690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62219371c9d4SSatish Balay p++; 6222651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6223394ed5ebSJunchao Zhang Annz++; 6224394ed5ebSJunchao Zhang } 6225394ed5ebSJunchao Zhang 6226651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6227394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6228394ed5ebSJunchao Zhang col = j[p]; 6229d71ae5a4SJacob Faibussowitsch do { 6230d71ae5a4SJacob Faibussowitsch p++; 6231d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6232394ed5ebSJunchao Zhang Bnnz++; 6233394ed5ebSJunchao Zhang } 6234394ed5ebSJunchao Zhang k = s; 6235394ed5ebSJunchao Zhang } 6236394ed5ebSJunchao Zhang 6237394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6238158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6239158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6240158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6241158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6242394ed5ebSJunchao Zhang 62436aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6244394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6245394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6246394ed5ebSJunchao Zhang k = rowBegin[r]; 6247394ed5ebSJunchao Zhang mid = rowMid[r]; 6248394ed5ebSJunchao Zhang s = rowEnd[r]; 62498e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 62508e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6251394ed5ebSJunchao Zhang Atot += mid - k; 6252394ed5ebSJunchao Zhang Btot += s - mid; 6253394ed5ebSJunchao Zhang 6254394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6255394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6256394ed5ebSJunchao Zhang col = j[p]; 6257394ed5ebSJunchao Zhang q = p; 6258d71ae5a4SJacob Faibussowitsch do { 6259d71ae5a4SJacob Faibussowitsch p++; 6260d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6261394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6262394ed5ebSJunchao Zhang Annz++; 6263394ed5ebSJunchao Zhang } 6264394ed5ebSJunchao Zhang 6265394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6266394ed5ebSJunchao Zhang col = j[p]; 6267394ed5ebSJunchao Zhang q = p; 6268d71ae5a4SJacob Faibussowitsch do { 6269d71ae5a4SJacob Faibussowitsch p++; 6270d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6271394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6272394ed5ebSJunchao Zhang Bnnz++; 6273394ed5ebSJunchao Zhang } 6274394ed5ebSJunchao Zhang } 6275394ed5ebSJunchao Zhang /* Output */ 6276394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6277394ed5ebSJunchao Zhang *Annz_ = Annz; 6278394ed5ebSJunchao Zhang *Atot_ = Atot; 6279394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6280394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6281394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6282394ed5ebSJunchao Zhang *Btot_ = Btot; 6283394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 62843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6285394ed5ebSJunchao Zhang } 6286394ed5ebSJunchao Zhang 628727430b45SBarry Smith /* 628827430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6289158ec288SJunchao Zhang 6290158ec288SJunchao Zhang Input Parameters: 6291158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6292158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6293158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6294651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6295158ec288SJunchao Zhang 6296158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6297158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6298158ec288SJunchao Zhang 6299158ec288SJunchao Zhang Example: 6300158ec288SJunchao Zhang nnz1 = 4 6301158ec288SJunchao Zhang nnz = 6 6302158ec288SJunchao Zhang imap = [1,3,4,5] 6303158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6304158ec288SJunchao Zhang then, 6305158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6306158ec288SJunchao Zhang */ 6307d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6308d71ae5a4SJacob Faibussowitsch { 6309158ec288SJunchao Zhang PetscCount k, p; 6310158ec288SJunchao Zhang 6311158ec288SJunchao Zhang PetscFunctionBegin; 6312158ec288SJunchao Zhang jmap_new[0] = 0; 6313158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6314158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6315158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6316158ec288SJunchao Zhang } 6317158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6319158ec288SJunchao Zhang } 6320158ec288SJunchao Zhang 632149abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63222c4ab24aSJunchao Zhang { 632349abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63242c4ab24aSJunchao Zhang 63252c4ab24aSJunchao Zhang PetscFunctionBegin; 63262c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63272c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63282c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63292c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63302c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63312c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63322c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63332c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63342c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63352c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63362c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63372c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63382c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63392c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63402c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63412c4ab24aSJunchao Zhang } 63422c4ab24aSJunchao Zhang 6343d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6344d71ae5a4SJacob Faibussowitsch { 6345394ed5ebSJunchao Zhang MPI_Comm comm; 6346394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6347394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6348394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6349394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63502c4ab24aSJunchao Zhang PetscContainer container; 63512c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6352394ed5ebSJunchao Zhang 6353394ed5ebSJunchao Zhang PetscFunctionBegin; 63549566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6356cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6358cbc6b225SStefano Zampini #else 63599566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6360cbc6b225SStefano Zampini #endif 63619566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6362cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6363cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6364cbc6b225SStefano Zampini 63659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63709566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63719566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 63729566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 63739566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6374394ed5ebSJunchao Zhang 63756aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6376394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6377394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6378e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6379e8729f6fSJunchao Zhang 6380e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6381394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6382394ed5ebSJunchao Zhang 6383394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6384394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6385394ed5ebSJunchao Zhang will have positive row indices. 6386394ed5ebSJunchao Zhang */ 6387394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 63881690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 63891690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6390f7d195e4SLawrence Mitchell else { 6391f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 63921690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6393f7d195e4SLawrence Mitchell } 6394394ed5ebSJunchao Zhang } 6395394ed5ebSJunchao Zhang 6396da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 63979566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6398651b1cf9SStefano Zampini 6399651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6400651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64011690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64026497c311SBarry Smith PetscCount i1start = k; 6403651b1cf9SStefano Zampini 64041690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64051690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6406394ed5ebSJunchao Zhang 6407394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6408394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6409394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6410394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6411394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6412394ed5ebSJunchao Zhang const PetscInt *ranges; 6413394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6414394ed5ebSJunchao Zhang 64159566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6417394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6418394ed5ebSJunchao Zhang PetscMPIInt owner; 6419394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6420cbc6b225SStefano Zampini 6421394ed5ebSJunchao Zhang /* Locate a row range */ 6422394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64239566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6424394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6425394ed5ebSJunchao Zhang 6426394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64279566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6428394ed5ebSJunchao Zhang 6429394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6430394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6431394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6432394ed5ebSJunchao Zhang PetscInt *nentries2; 6433394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6434cbc6b225SStefano Zampini 64359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64379566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64389566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6439394ed5ebSJunchao Zhang sendto = sendto2; 6440394ed5ebSJunchao Zhang nentries = nentries2; 6441394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6442394ed5ebSJunchao Zhang } 6443394ed5ebSJunchao Zhang sendto[nsend] = owner; 64446497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6445394ed5ebSJunchao Zhang nsend++; 6446394ed5ebSJunchao Zhang k = p; 6447394ed5ebSJunchao Zhang } 6448394ed5ebSJunchao Zhang 6449394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6450394ed5ebSJunchao Zhang PetscSF sf1; 6451394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6452394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6453394ed5ebSJunchao Zhang PetscInt *offsets; 6454394ed5ebSJunchao Zhang PetscSFNode *iremote; 6455394ed5ebSJunchao Zhang 64569566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6459394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6460394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6461394ed5ebSJunchao Zhang iremote[k].index = 0; 6462394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 646354c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6464394ed5ebSJunchao Zhang } 64659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64669566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64679566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6469e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6470394ed5ebSJunchao Zhang 6471394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6472394ed5ebSJunchao Zhang PetscSF sf2; 6473394ed5ebSJunchao Zhang nroots = nroots2; 6474394ed5ebSJunchao Zhang nleaves = nleaves2; 64759566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 64769566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 64779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6478394ed5ebSJunchao Zhang p = 0; 6479394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 648054c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6481394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6482394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 64836497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6484394ed5ebSJunchao Zhang } 6485394ed5ebSJunchao Zhang } 64869566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6487394ed5ebSJunchao Zhang 6488394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6489394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6490394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 64919566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6492834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6493834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6494de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6495de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6496834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6497834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6498834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6499834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6500394ed5ebSJunchao Zhang 65019566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65029566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6503394ed5ebSJunchao Zhang 6504394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6505394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65069566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6507394ed5ebSJunchao Zhang 6508651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6509651b1cf9SStefano Zampini PetscCount *Cperm1; 6510834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6511de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6512651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6513834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6514651b1cf9SStefano Zampini 6515651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6516651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6517651b1cf9SStefano Zampini PetscBool hypre; 651817b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6519651b1cf9SStefano Zampini if (hypre) { 6520651b1cf9SStefano Zampini PetscInt *minj; 6521651b1cf9SStefano Zampini PetscBT hasdiag; 6522651b1cf9SStefano Zampini 6523651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6524651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65251690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6526651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6527651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6528651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6529651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6530651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6531651b1cf9SStefano Zampini } 6532651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6533651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6534651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6535651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6536651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6537651b1cf9SStefano Zampini } 6538651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6539651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6540651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6541651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6542651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6543651b1cf9SStefano Zampini } 6544651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6545651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6546651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6547651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6548651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6549651b1cf9SStefano Zampini } 6550651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6551651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6552651b1cf9SStefano Zampini } 6553651b1cf9SStefano Zampini 6554651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6555651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6556651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6557651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6558394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6559394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6560394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6561394ed5ebSJunchao Zhang 6562651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65639566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6564651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65659566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6566394ed5ebSJunchao Zhang 6567394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6568394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6569394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6570394ed5ebSJunchao Zhang 65719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6575394ed5ebSJunchao Zhang 6576394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6577158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6578158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6579158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6580158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6581394ed5ebSJunchao Zhang 65829566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 65839566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6584158ec288SJunchao Zhang 6585158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6586158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6587158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6588158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6589158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6590158ec288SJunchao Zhang 6591158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6592158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6593158ec288SJunchao Zhang 6594158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6595158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6596158ec288SJunchao Zhang 6597158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6598158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6599158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6600158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66019566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66029566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6603e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66049566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6605394ed5ebSJunchao Zhang 6606158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6607158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6608158ec288SJunchao Zhang 6609394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6610394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6611394ed5ebSJunchao Zhang PetscInt *Aj_new; 66129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66139566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66149566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6615394ed5ebSJunchao Zhang Aj = Aj_new; 6616394ed5ebSJunchao Zhang } 6617394ed5ebSJunchao Zhang 6618394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6619394ed5ebSJunchao Zhang PetscInt *Bj_new; 66209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66229566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6623394ed5ebSJunchao Zhang Bj = Bj_new; 6624394ed5ebSJunchao Zhang } 6625394ed5ebSJunchao Zhang 6626cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6627394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6628cbc6b225SStefano Zampini MatType rtype; 6629394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6630cf8ba265SJunchao Zhang PetscObjectState state; 66319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6633394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66349371c9d4SSatish Balay if (cstart) { 66359371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66369371c9d4SSatish Balay } 6637c508b908SBarry Smith 66389566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6639c508b908SBarry Smith 6640c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6641c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 66429566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66430da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6644c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6645c508b908SBarry Smith 6646c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6647c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 66489566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66490da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6650c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6651c508b908SBarry Smith 66529566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66535bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6654cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6655462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6656cbc6b225SStefano Zampini 6657394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6658394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 66599f0612e4SBarry Smith a->free_a = PETSC_TRUE; 66609f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 66619f0612e4SBarry Smith b->free_a = PETSC_TRUE; 66629f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 666317b874c6SStefano Zampini a->maxnz = a->nz; 666417b874c6SStefano Zampini b->maxnz = b->nz; 6665394ed5ebSJunchao Zhang 6666cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66679566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66689566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66709566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6671cbc6b225SStefano Zampini 66722c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66732c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66742c4ab24aSJunchao Zhang coo->n = coo_n; 66752c4ab24aSJunchao Zhang coo->sf = sf2; 66762c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66772c4ab24aSJunchao Zhang coo->recvlen = nroots; 66782c4ab24aSJunchao Zhang coo->Annz = Annz; 66792c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66802c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66812c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66822c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 66832c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 66842c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 66852c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 66862c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 66872c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 66882c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 66892c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 66902c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 66912c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 66922c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 66932c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 66942c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 66952c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 66962c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 66972c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 66982c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 66992c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67002c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 670149abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67022c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67032c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6705394ed5ebSJunchao Zhang } 6706394ed5ebSJunchao Zhang 6707d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6708d71ae5a4SJacob Faibussowitsch { 6709394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6710394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6711394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67122c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67132c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67142c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67152c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67162c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67172c4ab24aSJunchao Zhang PetscContainer container; 67182c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6719394ed5ebSJunchao Zhang 6720394ed5ebSJunchao Zhang PetscFunctionBegin; 67212c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67222c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67232c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67242c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67252c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67262c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67272c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67282c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67292c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67302c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67312c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67322c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67332c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67342c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67352c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67362c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67372c4ab24aSJunchao Zhang 67389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6740394ed5ebSJunchao Zhang 6741394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67422c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6743394ed5ebSJunchao Zhang 6744394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67452c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6746394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67472c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6748da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6749158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6750158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6751394ed5ebSJunchao Zhang } 67522c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6753158ec288SJunchao Zhang PetscScalar sum = 0.0; 6754158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6755158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6756394ed5ebSJunchao Zhang } 67572c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6758394ed5ebSJunchao Zhang 6759394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67602c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6761394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6762394ed5ebSJunchao Zhang } 67632c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6764394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6765394ed5ebSJunchao Zhang } 67669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6769394ed5ebSJunchao Zhang } 6770394ed5ebSJunchao Zhang 6771ccd8e176SBarry Smith /*MC 6772ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6773ccd8e176SBarry Smith 6774ccd8e176SBarry Smith Options Database Keys: 677511a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6776ccd8e176SBarry Smith 6777ccd8e176SBarry Smith Level: beginner 67780cd7f59aSBarry Smith 67790cd7f59aSBarry Smith Notes: 67802ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67810cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67820cd7f59aSBarry Smith in the matrix 67830cd7f59aSBarry Smith 678411a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 678511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6786ccd8e176SBarry Smith 67871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6788ccd8e176SBarry Smith M*/ 6789d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6790d71ae5a4SJacob Faibussowitsch { 6791ccd8e176SBarry Smith Mat_MPIAIJ *b; 6792ccd8e176SBarry Smith PetscMPIInt size; 6793ccd8e176SBarry Smith 6794ccd8e176SBarry Smith PetscFunctionBegin; 67959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 67962205254eSKarl Rupp 67974dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6798ccd8e176SBarry Smith B->data = (void *)b; 6799aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6800ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6801ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6802ccd8e176SBarry Smith b->size = size; 68032205254eSKarl Rupp 68049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6805ccd8e176SBarry Smith 6806ccd8e176SBarry Smith /* build cache for off array entries formed */ 68079566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68082205254eSKarl Rupp 6809ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6810f4259b30SLisandro Dalcin b->colmap = NULL; 6811f4259b30SLisandro Dalcin b->garray = NULL; 6812ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6813ccd8e176SBarry Smith 6814ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68150298fd71SBarry Smith b->lvec = NULL; 68160298fd71SBarry Smith b->Mvctx = NULL; 6817ccd8e176SBarry Smith 6818ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6819f4259b30SLisandro Dalcin b->rowindices = NULL; 6820f4259b30SLisandro Dalcin b->rowvalues = NULL; 6821ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6822ccd8e176SBarry Smith 6823f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68240298fd71SBarry Smith b->spptr = NULL; 6825f60c3dc2SHong Zhang 68269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6832674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68373d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68393d0639e7SStefano Zampini #endif 6840d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6841d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6842d5e393b6SSuyash Tandon #endif 68433d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68453d0639e7SStefano Zampini #endif 68469779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6848191b95cbSRichard Tran Mills #endif 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68535d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68555d7652ecSHong Zhang #endif 6856d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 68579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6858d24d4204SJose E. Roman #endif 68599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68613dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68643dad0653Sstefano_zampini #endif 68659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6871ccd8e176SBarry Smith } 687281824310SBarry Smith 68735d83a8b1SBarry Smith /*@ 687411a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 687503bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 687603bfb495SBarry Smith 6877d083f849SBarry Smith Collective 687803bfb495SBarry Smith 687903bfb495SBarry Smith Input Parameters: 688003bfb495SBarry Smith + comm - MPI communicator 688111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 688203bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6883d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 68842ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 68852ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 68862ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6887483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 688804ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 688903bfb495SBarry Smith . a - matrix values 6890483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 68912ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 689203bfb495SBarry Smith - oa - matrix values 689303bfb495SBarry Smith 689403bfb495SBarry Smith Output Parameter: 689503bfb495SBarry Smith . mat - the matrix 689603bfb495SBarry Smith 689703bfb495SBarry Smith Level: advanced 689803bfb495SBarry Smith 689903bfb495SBarry Smith Notes: 6900f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6901292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 690203bfb495SBarry Smith 69032ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 690403bfb495SBarry Smith 69052ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 690603bfb495SBarry Smith 69077b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69087b55108eSBarry Smith 6909dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6910dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6911dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6912dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 691311a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6914dca341c0SJed Brown communication if it is known that only local entries will be set. 691503bfb495SBarry Smith 69161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6917db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69182b26979fSBarry Smith @*/ 6919d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6920d71ae5a4SJacob Faibussowitsch { 692103bfb495SBarry Smith Mat_MPIAIJ *maij; 692203bfb495SBarry Smith 692303bfb495SBarry Smith PetscFunctionBegin; 692408401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6925aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6926aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69279566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69299566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 693003bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69312205254eSKarl Rupp 69328d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 693303bfb495SBarry Smith 69349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 693603bfb495SBarry Smith 69379566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69389566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 693903bfb495SBarry Smith 69409566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69439566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69449566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 694603bfb495SBarry Smith } 694703bfb495SBarry Smith 69484e84afc0SStefano Zampini typedef struct { 69494e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69504e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69514e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69524e84afc0SStefano Zampini 69534e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69544e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69554e84afc0SStefano Zampini PetscScalar *bufa; 69564e84afc0SStefano Zampini Mat P_oth; 69574e84afc0SStefano Zampini 69584e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6959ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69604e84afc0SStefano Zampini 6961ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69624e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69634e84afc0SStefano Zampini of the temporary storage */ 69644e84afc0SStefano Zampini PetscBool reusesym; 69654e84afc0SStefano Zampini 69664e84afc0SStefano Zampini /* support for COO values insertion */ 6967ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6968ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6969ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6970ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6971c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6972c215019aSStefano Zampini PetscMemType mtype; 69734e84afc0SStefano Zampini 69744e84afc0SStefano Zampini /* customization */ 69754e84afc0SStefano Zampini PetscBool abmerge; 6976abb89eb1SStefano Zampini PetscBool P_oth_bind; 69774e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69784e84afc0SStefano Zampini 6979ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 6980d71ae5a4SJacob Faibussowitsch { 69814e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 69824e84afc0SStefano Zampini PetscInt i; 69834e84afc0SStefano Zampini 69844e84afc0SStefano Zampini PetscFunctionBegin; 69859566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 69869566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 69879566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 69889566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 69899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 69909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 69919566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 699248a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 69939566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 69949566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 69959566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 69969566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 69979566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 69989566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 69993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70004e84afc0SStefano Zampini } 70014e84afc0SStefano Zampini 7002fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7003fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7004fff043a9SJunchao Zhang */ 7005d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7006d71ae5a4SJacob Faibussowitsch { 7007c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7008c215019aSStefano Zampini 7009c215019aSStefano Zampini PetscFunctionBegin; 70109566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7011c215019aSStefano Zampini if (f) { 70129566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7013c215019aSStefano Zampini } else { 7014c215019aSStefano Zampini const PetscScalar *vv; 7015c215019aSStefano Zampini 70169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7017c215019aSStefano Zampini if (n && idx) { 7018c215019aSStefano Zampini PetscScalar *w = v; 7019c215019aSStefano Zampini const PetscInt *oi = idx; 7020c215019aSStefano Zampini PetscInt j; 7021c215019aSStefano Zampini 7022c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7023c215019aSStefano Zampini } else { 70249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7025c215019aSStefano Zampini } 70269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7027c215019aSStefano Zampini } 70283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7029c215019aSStefano Zampini } 7030c215019aSStefano Zampini 7031d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7032d71ae5a4SJacob Faibussowitsch { 70334e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70344e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70354e84afc0SStefano Zampini 70364e84afc0SStefano Zampini PetscFunctionBegin; 70374e84afc0SStefano Zampini MatCheckProduct(C, 1); 703828b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70394e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70404e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 704148a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 704248a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70434e84afc0SStefano Zampini } 70444e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7045abb89eb1SStefano Zampini 7046abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 704708401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70489566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7049abb89eb1SStefano Zampini } 70504e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70516497c311SBarry Smith PetscInt noff; 70524e84afc0SStefano Zampini 70536497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 70544e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70554e84afc0SStefano Zampini if (noff) { 70566497c311SBarry Smith PetscInt nown; 7057c215019aSStefano Zampini 70586497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 70599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70614e84afc0SStefano Zampini n_o += noff; 70624e84afc0SStefano Zampini n_d += nown; 70634e84afc0SStefano Zampini } else { 7064c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7065c215019aSStefano Zampini 70669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70674e84afc0SStefano Zampini n_d += mm->nz; 70684e84afc0SStefano Zampini } 70694e84afc0SStefano Zampini } 7070c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70719566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70729566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70734e84afc0SStefano Zampini } 70749566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70764e84afc0SStefano Zampini } 70774e84afc0SStefano Zampini 70784e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70794e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7080d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7081d71ae5a4SJacob Faibussowitsch { 70824e84afc0SStefano Zampini Mat_Product *product = C->product; 7083ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 70844e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 70854e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70864e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 70874e84afc0SStefano Zampini IS glob = NULL; 70884e84afc0SStefano Zampini const char *prefix; 70894e84afc0SStefano Zampini char pprefix[256]; 70904e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 709182a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 709282a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7093ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7094ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7095ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7096ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7097ddea5d60SJunchao Zhang 70984e84afc0SStefano Zampini MatProductType ptype; 7099d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71004e84afc0SStefano Zampini PetscMPIInt size; 71014e84afc0SStefano Zampini 71024e84afc0SStefano Zampini PetscFunctionBegin; 71034e84afc0SStefano Zampini MatCheckProduct(C, 1); 710428b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71054e84afc0SStefano Zampini ptype = product->type; 7106b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7107fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7108fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7109fa046f9fSJunchao Zhang } 71104e84afc0SStefano Zampini switch (ptype) { 71114e84afc0SStefano Zampini case MATPRODUCT_AB: 71124e84afc0SStefano Zampini A = product->A; 71134e84afc0SStefano Zampini P = product->B; 71144e84afc0SStefano Zampini m = A->rmap->n; 71154e84afc0SStefano Zampini n = P->cmap->n; 71164e84afc0SStefano Zampini M = A->rmap->N; 71174e84afc0SStefano Zampini N = P->cmap->N; 7118ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71194e84afc0SStefano Zampini break; 71204e84afc0SStefano Zampini case MATPRODUCT_AtB: 71214e84afc0SStefano Zampini P = product->A; 71224e84afc0SStefano Zampini A = product->B; 71234e84afc0SStefano Zampini m = P->cmap->n; 71244e84afc0SStefano Zampini n = A->cmap->n; 71254e84afc0SStefano Zampini M = P->cmap->N; 71264e84afc0SStefano Zampini N = A->cmap->N; 71274e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71284e84afc0SStefano Zampini break; 71294e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71304e84afc0SStefano Zampini A = product->A; 71314e84afc0SStefano Zampini P = product->B; 71324e84afc0SStefano Zampini m = P->cmap->n; 71334e84afc0SStefano Zampini n = P->cmap->n; 71344e84afc0SStefano Zampini M = P->cmap->N; 71354e84afc0SStefano Zampini N = P->cmap->N; 71364e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71374e84afc0SStefano Zampini break; 7138d71ae5a4SJacob Faibussowitsch default: 7139d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71404e84afc0SStefano Zampini } 71419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71424e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71434e84afc0SStefano Zampini 71444e84afc0SStefano Zampini /* defaults */ 71454e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71464e84afc0SStefano Zampini mp[i] = NULL; 71474e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71484e84afc0SStefano Zampini rmapt[i] = -1; 71494e84afc0SStefano Zampini cmapt[i] = -1; 71504e84afc0SStefano Zampini rmapa[i] = NULL; 71514e84afc0SStefano Zampini cmapa[i] = NULL; 71524e84afc0SStefano Zampini } 71534e84afc0SStefano Zampini 71544e84afc0SStefano Zampini /* customization */ 71559566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71564e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71574e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71584e84afc0SStefano Zampini if (product->api_user) { 7159d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71609566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7162d0609cedSBarry Smith PetscOptionsEnd(); 71634e84afc0SStefano Zampini } else { 7164d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7167d0609cedSBarry Smith PetscOptionsEnd(); 7168abb89eb1SStefano Zampini } 7169abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7170abb89eb1SStefano Zampini if (product->api_user) { 7171d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71729566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7173d0609cedSBarry Smith PetscOptionsEnd(); 7174abb89eb1SStefano Zampini } else { 7175d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71769566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7177d0609cedSBarry Smith PetscOptionsEnd(); 71784e84afc0SStefano Zampini } 71794e84afc0SStefano Zampini } 71804e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71814e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 71839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 71849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 71859566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 71869566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7187ddea5d60SJunchao Zhang 7188ddea5d60SJunchao Zhang cp = 0; 71894e84afc0SStefano Zampini switch (ptype) { 71904e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 71919566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 71924e84afc0SStefano Zampini 7193ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7194ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 71954e84afc0SStefano Zampini /* P is product->B */ 71969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 71979566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 71989566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 71999566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72009566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72019566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72029566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72034e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72049566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72059566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72074e84afc0SStefano Zampini rmapt[cp] = 1; 72084e84afc0SStefano Zampini cmapt[cp] = 2; 72094e84afc0SStefano Zampini cmapa[cp] = globidx; 72104e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72114e84afc0SStefano Zampini cp++; 7212ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72139566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72149566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72159566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72169566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72179566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72189566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72194e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72209566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72219566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72224e84afc0SStefano Zampini rmapt[cp] = 1; 72234e84afc0SStefano Zampini cmapt[cp] = 1; 72244e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72254e84afc0SStefano Zampini cp++; 72269566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72279566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72289566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72299566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72309566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72319566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72324e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72339566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72349566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72354e84afc0SStefano Zampini rmapt[cp] = 1; 72364e84afc0SStefano Zampini cmapt[cp] = 2; 72374e84afc0SStefano Zampini cmapa[cp] = p->garray; 72384e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72394e84afc0SStefano Zampini cp++; 72404e84afc0SStefano Zampini } 7241ddea5d60SJunchao Zhang 7242ddea5d60SJunchao Zhang /* A_off * P_other */ 72434e84afc0SStefano Zampini if (mmdata->P_oth) { 72449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72459566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7246f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 72479566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72489566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72499566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72509566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72519566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72529566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72539566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72544e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72559566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72569566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72574e84afc0SStefano Zampini rmapt[cp] = 1; 72584e84afc0SStefano Zampini cmapt[cp] = 2; 72594e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72604e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72614e84afc0SStefano Zampini cp++; 72624e84afc0SStefano Zampini } 72634e84afc0SStefano Zampini break; 7264ddea5d60SJunchao Zhang 72654e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72664e84afc0SStefano Zampini /* A is product->B */ 72679566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7268ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72699566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72709566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72719566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72729566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72739566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72749566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72754e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72769566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72779566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72789566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72794e84afc0SStefano Zampini rmapt[cp] = 2; 72804e84afc0SStefano Zampini rmapa[cp] = globidx; 72814e84afc0SStefano Zampini cmapt[cp] = 2; 72824e84afc0SStefano Zampini cmapa[cp] = globidx; 72834e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72844e84afc0SStefano Zampini cp++; 72854e84afc0SStefano Zampini } else { 72869566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72899566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72909566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72919566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72924e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72964e84afc0SStefano Zampini rmapt[cp] = 1; 72974e84afc0SStefano Zampini cmapt[cp] = 2; 72984e84afc0SStefano Zampini cmapa[cp] = globidx; 72994e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73004e84afc0SStefano Zampini cp++; 73019566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73029566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73039566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73049566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73059566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73069566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73074e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73089566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73099566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73104e84afc0SStefano Zampini rmapt[cp] = 2; 73114e84afc0SStefano Zampini rmapa[cp] = p->garray; 73124e84afc0SStefano Zampini cmapt[cp] = 2; 73134e84afc0SStefano Zampini cmapa[cp] = globidx; 73144e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73154e84afc0SStefano Zampini cp++; 73164e84afc0SStefano Zampini } 73174e84afc0SStefano Zampini break; 73184e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73199566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73204e84afc0SStefano Zampini /* P is product->B */ 73219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73229566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73239566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73249566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73259566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73269566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73279566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73284e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73309566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73324e84afc0SStefano Zampini rmapt[cp] = 2; 73334e84afc0SStefano Zampini rmapa[cp] = globidx; 73344e84afc0SStefano Zampini cmapt[cp] = 2; 73354e84afc0SStefano Zampini cmapa[cp] = globidx; 73364e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73374e84afc0SStefano Zampini cp++; 73384e84afc0SStefano Zampini if (mmdata->P_oth) { 73399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73409566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7341f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73429566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73439566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73459566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73469566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73479566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73489566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73494e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73509566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73519566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73524e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73534e84afc0SStefano Zampini cp++; 73549566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73559566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73569566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73579566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73589566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73599566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73604e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73629566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73634e84afc0SStefano Zampini rmapt[cp] = 2; 73644e84afc0SStefano Zampini rmapa[cp] = globidx; 73654e84afc0SStefano Zampini cmapt[cp] = 2; 73664e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73674e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73684e84afc0SStefano Zampini cp++; 73694e84afc0SStefano Zampini } 73704e84afc0SStefano Zampini break; 7371d71ae5a4SJacob Faibussowitsch default: 7372d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73734e84afc0SStefano Zampini } 73744e84afc0SStefano Zampini /* sanity check */ 73759371c9d4SSatish Balay if (size > 1) 73769371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73774e84afc0SStefano Zampini 73789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7379ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7380ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7381ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7382ddea5d60SJunchao Zhang } 73834e84afc0SStefano Zampini mmdata->cp = cp; 73844e84afc0SStefano Zampini C->product->data = mmdata; 73854e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 73864e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 73874e84afc0SStefano Zampini 7388c215019aSStefano Zampini /* memory type */ 7389c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 73909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7391d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 73929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7393c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7394d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 73953214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7396c215019aSStefano Zampini 73974e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7398ddea5d60SJunchao Zhang 7399ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7400ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7401ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7402ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7403ddea5d60SJunchao Zhang */ 74044e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74054e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74064e84afc0SStefano Zampini if (mptmp[cp]) continue; 7407ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74084e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74094e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74104e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74114e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74124e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74134e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74144e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74154e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7416ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7417ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74184e84afc0SStefano Zampini } 74194e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74204e84afc0SStefano Zampini } 7421ddea5d60SJunchao Zhang 7422ddea5d60SJunchao Zhang /* 7423ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7424ddea5d60SJunchao Zhang 7425ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7426ddea5d60SJunchao Zhang 7427d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7428ddea5d60SJunchao Zhang 7429ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7430ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7431ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7432ddea5d60SJunchao Zhang 7433ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7434da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7435ddea5d60SJunchao Zhang */ 74369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7438ddea5d60SJunchao Zhang 7439ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7440ddea5d60SJunchao Zhang if (hasoffproc) { 74414e84afc0SStefano Zampini PetscSF msf; 74424e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74434e84afc0SStefano Zampini 74449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7447ddea5d60SJunchao Zhang 74484e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74494e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74504e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74514e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7452ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74534e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74544e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74554e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74564e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74574e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74584e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74594e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74604e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74614e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74624e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74634e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74644e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74654e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7466ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74674e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74684e84afc0SStefano Zampini *coi++ = gr; 74694e84afc0SStefano Zampini *idxoff++ = j; 74704e84afc0SStefano Zampini } 74714e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74724e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74734e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74744e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74754e84afc0SStefano Zampini } else { /* offdiag */ 74764e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74774e84afc0SStefano Zampini } 74784e84afc0SStefano Zampini ncoo_o += nz; 7479ddea5d60SJunchao Zhang } else { /* this is a local row */ 74804e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74814e84afc0SStefano Zampini } 74824e84afc0SStefano Zampini } 74834e84afc0SStefano Zampini } 74844e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 74854e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 74864e84afc0SStefano Zampini } 74874e84afc0SStefano Zampini 74889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 74896497c311SBarry Smith PetscInt incoo_o; 74906497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 74916497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 74929566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 74939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 74944e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 74959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 74969566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 74979566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 74989566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 74999566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75009566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7501ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75029566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75034e84afc0SStefano Zampini coo_i = coo_i2; 75044e84afc0SStefano Zampini coo_j = coo_j2; 75054e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75064e84afc0SStefano Zampini ncoo = ncoo_d; 75079566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7508c215019aSStefano Zampini 75099566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75119566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75124e84afc0SStefano Zampini } 7513c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75144e84afc0SStefano Zampini 7515ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75164e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75174e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75184e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75194e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75204e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75214e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75224e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75234e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75244e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75254e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75264e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75274e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75284e84afc0SStefano Zampini 75294e84afc0SStefano Zampini if (mptmp[cp]) continue; 7530ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7531ddea5d60SJunchao Zhang /* fill coo_i */ 75324e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75334e84afc0SStefano Zampini const PetscInt gr = i + rs; 75344e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75354e84afc0SStefano Zampini } 7536ddea5d60SJunchao Zhang /* fill coo_j */ 7537ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7539ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7540ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7541ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75424e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75434e84afc0SStefano Zampini } 75444e84afc0SStefano Zampini ncoo_d += mm->nz; 7545ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75464e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75474e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75484e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75494e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7550ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75514e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7552ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75534e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75544e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75554e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7556ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75574e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75584e84afc0SStefano Zampini } 75594e84afc0SStefano Zampini ncoo_d += nz; 75604e84afc0SStefano Zampini } 75614e84afc0SStefano Zampini } 75624e84afc0SStefano Zampini } 75634e84afc0SStefano Zampini } 756448a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 756648a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75679566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7568ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75699566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75704e84afc0SStefano Zampini 757139cfb508SMark Adams /* set block sizes */ 757239cfb508SMark Adams A = product->A; 757339cfb508SMark Adams P = product->B; 757439cfb508SMark Adams switch (ptype) { 757539cfb508SMark Adams case MATPRODUCT_PtAP: 757658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 757739cfb508SMark Adams break; 757839cfb508SMark Adams case MATPRODUCT_RARt: 757958b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 758039cfb508SMark Adams break; 758139cfb508SMark Adams case MATPRODUCT_ABC: 758239cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 758339cfb508SMark Adams break; 758439cfb508SMark Adams case MATPRODUCT_AB: 758539cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 758639cfb508SMark Adams break; 758739cfb508SMark Adams case MATPRODUCT_AtB: 758858b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 758939cfb508SMark Adams break; 759039cfb508SMark Adams case MATPRODUCT_ABt: 759158b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 759239cfb508SMark Adams break; 759339cfb508SMark Adams default: 759439cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 759539cfb508SMark Adams } 759639cfb508SMark Adams 75974e84afc0SStefano Zampini /* preallocate with COO data */ 75989566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 75999566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76014e84afc0SStefano Zampini } 76024e84afc0SStefano Zampini 7603d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7604d71ae5a4SJacob Faibussowitsch { 76054e84afc0SStefano Zampini Mat_Product *product = mat->product; 76064e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76074e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7608abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76094e84afc0SStefano Zampini #else 76104e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76114e84afc0SStefano Zampini #endif 76124e84afc0SStefano Zampini 76134e84afc0SStefano Zampini PetscFunctionBegin; 76144e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76154e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 761648a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 761765e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7618abb89eb1SStefano Zampini switch (product->type) { 7619abb89eb1SStefano Zampini case MATPRODUCT_AB: 7620abb89eb1SStefano Zampini if (product->api_user) { 7621d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7623d0609cedSBarry Smith PetscOptionsEnd(); 7624abb89eb1SStefano Zampini } else { 7625d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76269566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7627d0609cedSBarry Smith PetscOptionsEnd(); 7628abb89eb1SStefano Zampini } 7629abb89eb1SStefano Zampini break; 7630abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7631abb89eb1SStefano Zampini if (product->api_user) { 7632d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7634d0609cedSBarry Smith PetscOptionsEnd(); 7635abb89eb1SStefano Zampini } else { 7636d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76379566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7638d0609cedSBarry Smith PetscOptionsEnd(); 7639abb89eb1SStefano Zampini } 7640abb89eb1SStefano Zampini break; 7641abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7642abb89eb1SStefano Zampini if (product->api_user) { 7643d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76449566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7645d0609cedSBarry Smith PetscOptionsEnd(); 7646abb89eb1SStefano Zampini } else { 7647d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76489566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7649d0609cedSBarry Smith PetscOptionsEnd(); 7650abb89eb1SStefano Zampini } 7651abb89eb1SStefano Zampini break; 7652d71ae5a4SJacob Faibussowitsch default: 7653d71ae5a4SJacob Faibussowitsch break; 7654abb89eb1SStefano Zampini } 7655abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7656abb89eb1SStefano Zampini } 76574e84afc0SStefano Zampini #endif 76584e84afc0SStefano Zampini if (match) { 76594e84afc0SStefano Zampini switch (product->type) { 76604e84afc0SStefano Zampini case MATPRODUCT_AB: 76614e84afc0SStefano Zampini case MATPRODUCT_AtB: 7662d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7663d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7664d71ae5a4SJacob Faibussowitsch break; 7665d71ae5a4SJacob Faibussowitsch default: 7666d71ae5a4SJacob Faibussowitsch break; 76674e84afc0SStefano Zampini } 76684e84afc0SStefano Zampini } 76694e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76709566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 767281824310SBarry Smith } 767398921bdaSJacob Faibussowitsch 767498921bdaSJacob Faibussowitsch /* 767572833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 767672833a62Smarkadams4 767772833a62Smarkadams4 n - the number of block indices in cc[] 767872833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 767972833a62Smarkadams4 */ 7680d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7681d71ae5a4SJacob Faibussowitsch { 768272833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 768372833a62Smarkadams4 const PetscInt *idx; 768472833a62Smarkadams4 768572833a62Smarkadams4 PetscFunctionBegin; 768672833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 768772833a62Smarkadams4 if (nidx) { 768872833a62Smarkadams4 cnt = 0; 768972833a62Smarkadams4 cc[cnt] = idx[0] / bs; 769072833a62Smarkadams4 for (j = 1; j < nidx; j++) { 769172833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 769272833a62Smarkadams4 } 769372833a62Smarkadams4 } 769472833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 769572833a62Smarkadams4 *n = cnt + 1; 76963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769772833a62Smarkadams4 } 769872833a62Smarkadams4 769972833a62Smarkadams4 /* 770072833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 770172833a62Smarkadams4 770272833a62Smarkadams4 ncollapsed - the number of block indices 770372833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 770472833a62Smarkadams4 */ 7705d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7706d71ae5a4SJacob Faibussowitsch { 770772833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 770872833a62Smarkadams4 770972833a62Smarkadams4 PetscFunctionBegin; 771072833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 771172833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 771272833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 771372833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77149371c9d4SSatish Balay cprevtmp = cprev; 77159371c9d4SSatish Balay cprev = merged; 77169371c9d4SSatish Balay merged = cprevtmp; 771772833a62Smarkadams4 } 771872833a62Smarkadams4 *ncollapsed = nprev; 771972833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772172833a62Smarkadams4 } 772272833a62Smarkadams4 77232d776b49SBarry Smith /* 772472833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 772572833a62Smarkadams4 772672833a62Smarkadams4 Input Parameter: 772772833a62Smarkadams4 . Amat - matrix 772872833a62Smarkadams4 - symmetrize - make the result symmetric 772972833a62Smarkadams4 + scale - scale with diagonal 773072833a62Smarkadams4 773172833a62Smarkadams4 Output Parameter: 773272833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 773372833a62Smarkadams4 773472833a62Smarkadams4 */ 7735e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7736d71ae5a4SJacob Faibussowitsch { 773772833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 773872833a62Smarkadams4 MPI_Comm comm; 773972833a62Smarkadams4 Mat Gmat; 774072833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 774172833a62Smarkadams4 Mat a, b, c; 774272833a62Smarkadams4 MatType jtype; 774372833a62Smarkadams4 774472833a62Smarkadams4 PetscFunctionBegin; 774572833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 774672833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 774772833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 774872833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 774972833a62Smarkadams4 nloc = (Iend - Istart) / bs; 775072833a62Smarkadams4 775172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 775272833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 775372833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 775472833a62Smarkadams4 775572833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 775672833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 775772833a62Smarkadams4 implementation */ 775872833a62Smarkadams4 if (bs > 1) { 775972833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 776072833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 776172833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 776272833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 776372833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 776472833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 776572833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77662cf69117Smarkadams4 MatScalar *aa, val, *AA; 77672cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77686497c311SBarry Smith 77699371c9d4SSatish Balay if (isseqaij) { 77709371c9d4SSatish Balay a = Amat; 77719371c9d4SSatish Balay b = NULL; 77729371c9d4SSatish Balay } else { 777372833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77749371c9d4SSatish Balay a = d->A; 77759371c9d4SSatish Balay b = d->B; 777672833a62Smarkadams4 } 777772833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 777832603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 777972833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77802cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 778159ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 77826497c311SBarry Smith 778359ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 778459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 778559ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 778659ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 778772833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 778859ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 778959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 779059ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 779159ee9f9fSPierre Jolivet else { 779259ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 779359ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 779459ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 779572833a62Smarkadams4 } 779659ee9f9fSPierre Jolivet } 779759ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 779859ee9f9fSPierre Jolivet } 779959ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 780072833a62Smarkadams4 if (!ok) { 780172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 780259ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 780372833a62Smarkadams4 goto old_bs; 780472833a62Smarkadams4 } 780572833a62Smarkadams4 } 780672833a62Smarkadams4 } 780772833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 780872833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 780972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78102cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 781172833a62Smarkadams4 // diag 781272833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 781372833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78146497c311SBarry Smith 781572833a62Smarkadams4 ai = aseq->i; 781672833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 781772833a62Smarkadams4 aj = aseq->j + ai[brow]; 78186497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 781972833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 782072833a62Smarkadams4 val = 0; 7821e02fb3cdSMark Adams if (index_size == 0) { 78226497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 782372833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78246497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 782572833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 782672833a62Smarkadams4 } 782772833a62Smarkadams4 } 7828e02fb3cdSMark Adams } else { // use (index,index) value if provided 78296497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78306497c311SBarry Smith PetscInt ii = index[iii]; 7831e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78326497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78336497c311SBarry Smith PetscInt jj = index[jjj]; 7834cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7835e02fb3cdSMark Adams } 7836e02fb3cdSMark Adams } 7837e02fb3cdSMark Adams } 7838835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 783972833a62Smarkadams4 AA[k / bs] = val; 784072833a62Smarkadams4 } 784172833a62Smarkadams4 grow = Istart / bs + brow / bs; 784266521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 784372833a62Smarkadams4 } 784472833a62Smarkadams4 // off-diag 784572833a62Smarkadams4 if (ismpiaij) { 784672833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 784772833a62Smarkadams4 const PetscScalar *vals; 784872833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78496497c311SBarry Smith 785072833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 785172833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 785272833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78536497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 785459ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 785572833a62Smarkadams4 AA[k / bs] = 0; 785672833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 785772833a62Smarkadams4 } 785872833a62Smarkadams4 nc = ncols / bs; 785972833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7860e02fb3cdSMark Adams if (index_size == 0) { 78616497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 786272833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78636497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78646497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7865835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 786672833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 786772833a62Smarkadams4 } 786872833a62Smarkadams4 } 786972833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 787072833a62Smarkadams4 } 7871e02fb3cdSMark Adams } else { // use (index,index) value if provided 78726497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78736497c311SBarry Smith PetscInt ii = index[iii]; 7874e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78756497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78766497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 78776497c311SBarry Smith PetscInt jj = index[jjj]; 7878e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7879e02fb3cdSMark Adams } 7880e02fb3cdSMark Adams } 7881e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7882e02fb3cdSMark Adams } 7883e02fb3cdSMark Adams } 788472833a62Smarkadams4 grow = Istart / bs + brow / bs; 788566521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 788672833a62Smarkadams4 } 788772833a62Smarkadams4 } 788872833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 788972833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 78902cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 789172833a62Smarkadams4 } else { 789272833a62Smarkadams4 const PetscScalar *vals; 789372833a62Smarkadams4 const PetscInt *idx; 789472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 789572833a62Smarkadams4 old_bs: 789672833a62Smarkadams4 /* 789772833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 789872833a62Smarkadams4 */ 789972833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 790032603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 790172833a62Smarkadams4 if (isseqaij) { 790272833a62Smarkadams4 PetscInt max_d_nnz; 79036497c311SBarry Smith 790472833a62Smarkadams4 /* 790572833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 790672833a62Smarkadams4 */ 790772833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 790872833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 790972833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 791048a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 791172833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 791272833a62Smarkadams4 } else if (ismpiaij) { 791372833a62Smarkadams4 Mat Daij, Oaij; 791472833a62Smarkadams4 const PetscInt *garray; 791572833a62Smarkadams4 PetscInt max_d_nnz; 79166497c311SBarry Smith 791772833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 791872833a62Smarkadams4 /* 791972833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 792072833a62Smarkadams4 */ 792172833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 792272833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792372833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792448a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792572833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792672833a62Smarkadams4 /* 792772833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 792872833a62Smarkadams4 */ 792972833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 793072833a62Smarkadams4 o_nnz[jj] = 0; 793172833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 793272833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 793372833a62Smarkadams4 o_nnz[jj] += ncols; 793472833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 793572833a62Smarkadams4 } 793672833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 793772833a62Smarkadams4 } 793872833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 793972833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 794072833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 794172833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 794272833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 794372833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 794472833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79456497c311SBarry Smith 794672833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 794772833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 794872833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 794972833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79506497c311SBarry Smith 795172833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 795272833a62Smarkadams4 } 795372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 795472833a62Smarkadams4 } 795572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 795672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 795772833a62Smarkadams4 } 795872833a62Smarkadams4 } else { 79592d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79602d776b49SBarry Smith else { 79612d776b49SBarry Smith Gmat = Amat; 79622d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79632d776b49SBarry Smith } 79649371c9d4SSatish Balay if (isseqaij) { 79659371c9d4SSatish Balay a = Gmat; 79669371c9d4SSatish Balay b = NULL; 79679371c9d4SSatish Balay } else { 796872833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79699371c9d4SSatish Balay a = d->A; 79709371c9d4SSatish Balay b = d->B; 797172833a62Smarkadams4 } 79722d776b49SBarry Smith if (filter >= 0 || scale) { 79732d776b49SBarry Smith /* take absolute value of each entry */ 797472833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 797572833a62Smarkadams4 MatInfo info; 797672833a62Smarkadams4 PetscScalar *avals; 79776497c311SBarry Smith 797872833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 797972833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 798072833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 798172833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 798272833a62Smarkadams4 } 798372833a62Smarkadams4 } 79842d776b49SBarry Smith } 798572833a62Smarkadams4 if (symmetrize) { 7986b94d7dedSBarry Smith PetscBool isset, issym; 79876497c311SBarry Smith 7988b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 7989b94d7dedSBarry Smith if (!isset || !issym) { 799072833a62Smarkadams4 Mat matTrans; 79916497c311SBarry Smith 799272833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 79931fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 799472833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 799572833a62Smarkadams4 } 799672833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 79972d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 799872833a62Smarkadams4 if (scale) { 799972833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 800072833a62Smarkadams4 Vec diag; 80016497c311SBarry Smith 800272833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 800372833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 800472833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 800572833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 800672833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 800772833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 800872833a62Smarkadams4 } 800972833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80102d776b49SBarry Smith if (filter >= 0) { 80112ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80122ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80132d776b49SBarry Smith } 801472833a62Smarkadams4 *a_Gmat = Gmat; 80153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 801672833a62Smarkadams4 } 801772833a62Smarkadams4 801872833a62Smarkadams4 /* 801998921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 802098921bdaSJacob Faibussowitsch */ 802198921bdaSJacob Faibussowitsch 802298921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80239566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80249566063dSJacob Faibussowitsch #undef PetscCall 80259371c9d4SSatish Balay #define PetscCall(...) \ 80269371c9d4SSatish Balay do { \ 80275f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 802898921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 802998921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 803098921bdaSJacob Faibussowitsch return; \ 803198921bdaSJacob Faibussowitsch } \ 803298921bdaSJacob Faibussowitsch } while (0) 803398921bdaSJacob Faibussowitsch 803498921bdaSJacob Faibussowitsch #undef SETERRQ 80359371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80369371c9d4SSatish Balay do { \ 803798921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 803898921bdaSJacob Faibussowitsch return; \ 803998921bdaSJacob Faibussowitsch } while (0) 804098921bdaSJacob Faibussowitsch 804198921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 804298921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 804398921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 804498921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 804598921bdaSJacob Faibussowitsch #else 804698921bdaSJacob Faibussowitsch #endif 8047d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8048d71ae5a4SJacob Faibussowitsch { 804998921bdaSJacob Faibussowitsch Mat mat = *mmat; 805098921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 805198921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 805298921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 805398921bdaSJacob Faibussowitsch PetscScalar value; 805498921bdaSJacob Faibussowitsch 805598921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 805698921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80575f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 805898921bdaSJacob Faibussowitsch { 805998921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 806098921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 806198921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 806298921bdaSJacob Faibussowitsch 806398921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 806498921bdaSJacob Faibussowitsch Mat A = aij->A; 806598921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 806698921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 806798921bdaSJacob Faibussowitsch MatScalar *aa; 8068f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 806998921bdaSJacob Faibussowitsch Mat B = aij->B; 807098921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 807198921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 807298921bdaSJacob Faibussowitsch MatScalar *ba; 807398921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 807498921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 807598921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 807698921bdaSJacob Faibussowitsch 807798921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 807898921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 807998921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 808098921bdaSJacob Faibussowitsch 808198921bdaSJacob Faibussowitsch PetscFunctionBegin; 80829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 808498921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 808598921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 80866bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 808798921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 808898921bdaSJacob Faibussowitsch row = im[i] - rstart; 808998921bdaSJacob Faibussowitsch lastcol1 = -1; 809098921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 809198921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 809298921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 809398921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 809498921bdaSJacob Faibussowitsch low1 = 0; 809598921bdaSJacob Faibussowitsch high1 = nrow1; 809698921bdaSJacob Faibussowitsch lastcol2 = -1; 809798921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 809898921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 809998921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 810098921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 810198921bdaSJacob Faibussowitsch low2 = 0; 810298921bdaSJacob Faibussowitsch high2 = nrow2; 810398921bdaSJacob Faibussowitsch 810498921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 810598921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 810698921bdaSJacob Faibussowitsch else value = v[i + j * m]; 810798921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 810898921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 810998921bdaSJacob Faibussowitsch col = in[j] - cstart; 811098921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 811198921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 811298921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 811363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 811498921bdaSJacob Faibussowitsch } else { 811598921bdaSJacob Faibussowitsch if (mat->was_assembled) { 811648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 811798921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8118eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 811998921bdaSJacob Faibussowitsch col--; 812098921bdaSJacob Faibussowitsch #else 812198921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 812298921bdaSJacob Faibussowitsch #endif 8123f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8124eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 812598921bdaSJacob Faibussowitsch col = in[j]; 812698921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 812798921bdaSJacob Faibussowitsch B = aij->B; 812898921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81299371c9d4SSatish Balay bimax = b->imax; 81309371c9d4SSatish Balay bi = b->i; 81319371c9d4SSatish Balay bilen = b->ilen; 81329371c9d4SSatish Balay bj = b->j; 813398921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 813498921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 813598921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 813698921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 813798921bdaSJacob Faibussowitsch low2 = 0; 813898921bdaSJacob Faibussowitsch high2 = nrow2; 813998921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 814098921bdaSJacob Faibussowitsch ba = b->a; 814198921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 814298921bdaSJacob Faibussowitsch } 814398921bdaSJacob Faibussowitsch } else col = in[j]; 814498921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 814598921bdaSJacob Faibussowitsch } 814698921bdaSJacob Faibussowitsch } 814798921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 814898921bdaSJacob Faibussowitsch if (roworiented) { 81499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 815098921bdaSJacob Faibussowitsch } else { 81519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 815298921bdaSJacob Faibussowitsch } 815398921bdaSJacob Faibussowitsch } 815498921bdaSJacob Faibussowitsch } 81559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 815798921bdaSJacob Faibussowitsch } 815898921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 815998921bdaSJacob Faibussowitsch } 816072833a62Smarkadams4 816198921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 816298921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 816398921bdaSJacob Faibussowitsch * original definitions */ 81649566063dSJacob Faibussowitsch #undef PetscCall 816598921bdaSJacob Faibussowitsch #undef SETERRQ 8166