xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 8d7a6e4737edf2a8e4976d6ccded49fbc76a7fa4)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
28a729477SBarry Smith 
3b47fd4b1SSatish Balay #include "src/mat/impls/aij/mpi/mpiaij.h"   /*I "petscmat.h" I*/
4d9942c19SSatish Balay #include "src/inline/spops.h"
58a729477SBarry Smith 
60f5bd95cSBarry Smith /*
70f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
89e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
90f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
100f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
110f5bd95cSBarry Smith has an order N integer array but is fast to acess.
129e25ed09SBarry Smith */
134a2ae208SSatish Balay #undef __FUNCT__
144a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIAIJ_Private"
15dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIAIJ_Private(Mat mat)
169e25ed09SBarry Smith {
1744a69424SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
186849ba73SBarry Smith   PetscErrorCode ierr;
19899cda47SBarry Smith   PetscInt       n = aij->B->cmap.n,i;
20dbb450caSBarry Smith 
213a40ed3dSBarry Smith   PetscFunctionBegin;
22aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
23273d9f13SBarry Smith   ierr = PetscTableCreate(n,&aij->colmap);CHKERRQ(ierr);
24b1fc9764SSatish Balay   for (i=0; i<n; i++){
250f5bd95cSBarry Smith     ierr = PetscTableAdd(aij->colmap,aij->garray[i]+1,i+1);CHKERRQ(ierr);
26b1fc9764SSatish Balay   }
27b1fc9764SSatish Balay #else
28899cda47SBarry Smith   ierr = PetscMalloc((mat->cmap.N+1)*sizeof(PetscInt),&aij->colmap);CHKERRQ(ierr);
29899cda47SBarry Smith   ierr = PetscLogObjectMemory(mat,mat->cmap.N*sizeof(PetscInt));CHKERRQ(ierr);
30899cda47SBarry Smith   ierr = PetscMemzero(aij->colmap,mat->cmap.N*sizeof(PetscInt));CHKERRQ(ierr);
31905e6a2fSBarry Smith   for (i=0; i<n; i++) aij->colmap[aij->garray[i]] = i+1;
32b1fc9764SSatish Balay #endif
333a40ed3dSBarry Smith   PetscFunctionReturn(0);
349e25ed09SBarry Smith }
359e25ed09SBarry Smith 
36085a36d4SBarry Smith 
370520107fSSatish Balay #define CHUNKSIZE   15
3830770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \
390520107fSSatish Balay { \
407cd84e04SBarry Smith     if (col <= lastcol1) low1 = 0; else high1 = nrow1; \
41fd3458f5SBarry Smith     lastcol1 = col;\
42fd3458f5SBarry Smith     while (high1-low1 > 5) { \
43fd3458f5SBarry Smith       t = (low1+high1)/2; \
44fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
45fd3458f5SBarry Smith       else             low1  = t; \
46ba4e3ef2SSatish Balay     } \
47fd3458f5SBarry Smith       for (_i=low1; _i<high1; _i++) { \
48fd3458f5SBarry Smith         if (rp1[_i] > col) break; \
49fd3458f5SBarry Smith         if (rp1[_i] == col) { \
50fd3458f5SBarry Smith           if (addv == ADD_VALUES) ap1[_i] += value;   \
51fd3458f5SBarry Smith           else                    ap1[_i] = value; \
5230770e4dSSatish Balay           goto a_noinsert; \
530520107fSSatish Balay         } \
540520107fSSatish Balay       }  \
55abc0a331SBarry Smith       if (value == 0.0 && ignorezeroentries) goto a_noinsert; \
5689280ab3SLois Curfman McInnes       if (nonew == 1) goto a_noinsert; \
57085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
58421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,am,1,nrow1,row,col,rmax1,aa,ai,aj,rp1,ap1,aimax,nonew,MatScalar); \
59669a8dbcSSatish Balay       N = nrow1++ - 1; a->nz++; high1++; \
600520107fSSatish Balay       /* shift up all the later entries in this row */ \
610520107fSSatish Balay       for (ii=N; ii>=_i; ii--) { \
62fd3458f5SBarry Smith         rp1[ii+1] = rp1[ii]; \
63fd3458f5SBarry Smith         ap1[ii+1] = ap1[ii]; \
640520107fSSatish Balay       } \
65fd3458f5SBarry Smith       rp1[_i] = col;  \
66fd3458f5SBarry Smith       ap1[_i] = value;  \
6730770e4dSSatish Balay       a_noinsert: ; \
68fd3458f5SBarry Smith       ailen[row] = nrow1; \
690520107fSSatish Balay }
700a198c4cSBarry Smith 
71085a36d4SBarry Smith 
7230770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \
7330770e4dSSatish Balay { \
747cd84e04SBarry Smith     if (col <= lastcol2) low2 = 0; else high2 = nrow2; \
75fd3458f5SBarry Smith     lastcol2 = col;\
76fd3458f5SBarry Smith     while (high2-low2 > 5) { \
77fd3458f5SBarry Smith       t = (low2+high2)/2; \
78fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
79fd3458f5SBarry Smith       else             low2  = t; \
80ba4e3ef2SSatish Balay     } \
81fd3458f5SBarry Smith        for (_i=low2; _i<high2; _i++) { \
82fd3458f5SBarry Smith         if (rp2[_i] > col) break; \
83fd3458f5SBarry Smith         if (rp2[_i] == col) { \
84fd3458f5SBarry Smith           if (addv == ADD_VALUES) ap2[_i] += value;   \
85fd3458f5SBarry Smith           else                    ap2[_i] = value; \
8630770e4dSSatish Balay           goto b_noinsert; \
8730770e4dSSatish Balay         } \
8830770e4dSSatish Balay       }  \
89abc0a331SBarry Smith       if (value == 0.0 && ignorezeroentries) goto b_noinsert; \
9089280ab3SLois Curfman McInnes       if (nonew == 1) goto b_noinsert; \
91085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
92421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,bm,1,nrow2,row,col,rmax2,ba,bi,bj,rp2,ap2,bimax,nonew,MatScalar); \
93669a8dbcSSatish Balay       N = nrow2++ - 1; b->nz++; high2++;\
9430770e4dSSatish Balay       /* shift up all the later entries in this row */ \
9530770e4dSSatish Balay       for (ii=N; ii>=_i; ii--) { \
96fd3458f5SBarry Smith         rp2[ii+1] = rp2[ii]; \
97fd3458f5SBarry Smith         ap2[ii+1] = ap2[ii]; \
9830770e4dSSatish Balay       } \
99fd3458f5SBarry Smith       rp2[_i] = col;  \
100fd3458f5SBarry Smith       ap2[_i] = value;  \
10130770e4dSSatish Balay       b_noinsert: ; \
102fd3458f5SBarry Smith       bilen[row] = nrow2; \
10330770e4dSSatish Balay }
10430770e4dSSatish Balay 
1054a2ae208SSatish Balay #undef __FUNCT__
1062fd7e33dSBarry Smith #define __FUNCT__ "MatSetValuesRow_MPIAIJ"
1072fd7e33dSBarry Smith PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A,PetscInt row,const PetscScalar v[])
1082fd7e33dSBarry Smith {
1092fd7e33dSBarry Smith   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)A->data;
1102fd7e33dSBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)mat->A->data,*b = (Mat_SeqAIJ*)mat->B->data;
1112fd7e33dSBarry Smith   PetscErrorCode ierr;
1122fd7e33dSBarry Smith   PetscInt       l,*garray = mat->garray,diag;
1132fd7e33dSBarry Smith 
1142fd7e33dSBarry Smith   PetscFunctionBegin;
1152fd7e33dSBarry Smith   /* code only works for square matrices A */
1162fd7e33dSBarry Smith 
1172fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
1182fd7e33dSBarry Smith   ierr = MatGetOwnershipRange(A,&diag,0);CHKERRQ(ierr);
1192fd7e33dSBarry Smith   row  = row - diag;
1202fd7e33dSBarry Smith   for (l=0; l<b->i[row+1]-b->i[row]; l++) {
1212fd7e33dSBarry Smith     if (garray[b->j[b->i[row]+l]] > diag) break;
1222fd7e33dSBarry Smith   }
1232fd7e33dSBarry Smith   ierr = PetscMemcpy(b->a+b->i[row],v,l*sizeof(PetscScalar));CHKERRQ(ierr);
1242fd7e33dSBarry Smith 
1252fd7e33dSBarry Smith   /* diagonal part */
1262fd7e33dSBarry Smith   ierr = PetscMemcpy(a->a+a->i[row],v+l,(a->i[row+1]-a->i[row])*sizeof(PetscScalar));CHKERRQ(ierr);
1272fd7e33dSBarry Smith 
1282fd7e33dSBarry Smith   /* right of diagonal part */
1292fd7e33dSBarry Smith   ierr = PetscMemcpy(b->a+b->i[row]+l,v+l+a->i[row+1]-a->i[row],(b->i[row+1]-b->i[row]-l)*sizeof(PetscScalar));CHKERRQ(ierr);
1302fd7e33dSBarry Smith   PetscFunctionReturn(0);
1312fd7e33dSBarry Smith }
1322fd7e33dSBarry Smith 
1332fd7e33dSBarry Smith #undef __FUNCT__
1344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIAIJ"
135b1d57f15SBarry Smith PetscErrorCode MatSetValues_MPIAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
1368a729477SBarry Smith {
13744a69424SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
13887828ca2SBarry Smith   PetscScalar    value;
139dfbe8321SBarry Smith   PetscErrorCode ierr;
140899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend;
141899cda47SBarry Smith   PetscInt       cstart = mat->cmap.rstart,cend = mat->cmap.rend,row,col;
142273d9f13SBarry Smith   PetscTruth     roworiented = aij->roworiented;
1438a729477SBarry Smith 
1440520107fSSatish Balay   /* Some Variables required in the macro */
1454ee7247eSSatish Balay   Mat            A = aij->A;
1464ee7247eSSatish Balay   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
14757809a77SBarry Smith   PetscInt       *aimax = a->imax,*ai = a->i,*ailen = a->ilen,*aj = a->j;
14887828ca2SBarry Smith   PetscScalar    *aa = a->a;
149329f5518SBarry Smith   PetscTruth     ignorezeroentries = (((a->ignorezeroentries)&&(addv==ADD_VALUES))?PETSC_TRUE:PETSC_FALSE);
15030770e4dSSatish Balay   Mat            B = aij->B;
15130770e4dSSatish Balay   Mat_SeqAIJ     *b = (Mat_SeqAIJ*)B->data;
152899cda47SBarry Smith   PetscInt       *bimax = b->imax,*bi = b->i,*bilen = b->ilen,*bj = b->j,bm = aij->B->rmap.n,am = aij->A->rmap.n;
15387828ca2SBarry Smith   PetscScalar    *ba = b->a;
15430770e4dSSatish Balay 
155fd3458f5SBarry Smith   PetscInt       *rp1,*rp2,ii,nrow1,nrow2,_i,rmax1,rmax2,N,low1,high1,low2,high2,t,lastcol1,lastcol2;
156fd3458f5SBarry Smith   PetscInt       nonew = a->nonew;
157fd3458f5SBarry Smith   PetscScalar    *ap1,*ap2;
1584ee7247eSSatish Balay 
1593a40ed3dSBarry Smith   PetscFunctionBegin;
1608a729477SBarry Smith   for (i=0; i<m; i++) {
1615ef9f2a5SBarry Smith     if (im[i] < 0) continue;
1622515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
163899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
1640a198c4cSBarry Smith #endif
1654b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
1664b0e389bSBarry Smith       row      = im[i] - rstart;
167fd3458f5SBarry Smith       lastcol1 = -1;
168fd3458f5SBarry Smith       rp1      = aj + ai[row];
169fd3458f5SBarry Smith       ap1      = aa + ai[row];
170fd3458f5SBarry Smith       rmax1    = aimax[row];
171fd3458f5SBarry Smith       nrow1    = ailen[row];
172fd3458f5SBarry Smith       low1     = 0;
173fd3458f5SBarry Smith       high1    = nrow1;
174fd3458f5SBarry Smith       lastcol2 = -1;
175fd3458f5SBarry Smith       rp2      = bj + bi[row];
176d498b1e9SBarry Smith       ap2      = ba + bi[row];
177fd3458f5SBarry Smith       rmax2    = bimax[row];
178d498b1e9SBarry Smith       nrow2    = bilen[row];
179fd3458f5SBarry Smith       low2     = 0;
180fd3458f5SBarry Smith       high2    = nrow2;
181fd3458f5SBarry Smith 
1821eb62cbbSBarry Smith       for (j=0; j<n; j++) {
1834b0e389bSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
184abc0a331SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue;
185fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend){
186fd3458f5SBarry Smith           col = in[j] - cstart;
18730770e4dSSatish Balay           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
188273d9f13SBarry Smith         } else if (in[j] < 0) continue;
1892515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
190899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
1910a198c4cSBarry Smith #endif
1921eb62cbbSBarry Smith         else {
193227d817aSBarry Smith           if (mat->was_assembled) {
194905e6a2fSBarry Smith             if (!aij->colmap) {
195905e6a2fSBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
196905e6a2fSBarry Smith             }
197aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
1980f5bd95cSBarry Smith             ierr = PetscTableFind(aij->colmap,in[j]+1,&col);CHKERRQ(ierr);
199fa46199cSSatish Balay 	    col--;
200b1fc9764SSatish Balay #else
201905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
202b1fc9764SSatish Balay #endif
203ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2042493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
2054b0e389bSBarry Smith               col =  in[j];
2069bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
207f9508a3cSSatish Balay               B = aij->B;
208f9508a3cSSatish Balay               b = (Mat_SeqAIJ*)B->data;
209f9508a3cSSatish Balay               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
210d498b1e9SBarry Smith               rp2      = bj + bi[row];
211d498b1e9SBarry Smith               ap2      = ba + bi[row];
212d498b1e9SBarry Smith               rmax2    = bimax[row];
213d498b1e9SBarry Smith               nrow2    = bilen[row];
214d498b1e9SBarry Smith               low2     = 0;
215d498b1e9SBarry Smith               high2    = nrow2;
216899cda47SBarry Smith               bm       = aij->B->rmap.n;
217f9508a3cSSatish Balay               ba = b->a;
218d6dfbf8fSBarry Smith             }
219c48de900SBarry Smith           } else col = in[j];
22030770e4dSSatish Balay           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
2211eb62cbbSBarry Smith         }
2221eb62cbbSBarry Smith       }
2235ef9f2a5SBarry Smith     } else {
22490f02eecSBarry Smith       if (!aij->donotstash) {
225d36fbae8SSatish Balay         if (roworiented) {
2265b8514ebSBarry Smith           if (ignorezeroentries && v[i*n] == 0.0) continue;
2278798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
228d36fbae8SSatish Balay         } else {
2295b8514ebSBarry Smith           if (ignorezeroentries && v[i] == 0.0) continue;
2308798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
2314b0e389bSBarry Smith         }
2321eb62cbbSBarry Smith       }
2338a729477SBarry Smith     }
23490f02eecSBarry Smith   }
2353a40ed3dSBarry Smith   PetscFunctionReturn(0);
2368a729477SBarry Smith }
2378a729477SBarry Smith 
238085a36d4SBarry Smith 
2394a2ae208SSatish Balay #undef __FUNCT__
2404a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIAIJ"
241b1d57f15SBarry Smith PetscErrorCode MatGetValues_MPIAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
242b49de8d1SLois Curfman McInnes {
243b49de8d1SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
244dfbe8321SBarry Smith   PetscErrorCode ierr;
245899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend;
246899cda47SBarry Smith   PetscInt       cstart = mat->cmap.rstart,cend = mat->cmap.rend,row,col;
247b49de8d1SLois Curfman McInnes 
2483a40ed3dSBarry Smith   PetscFunctionBegin;
249b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
25077431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
251899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
252b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
253b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
254b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
25577431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]);
256899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
257b49de8d1SLois Curfman McInnes         if (idxn[j] >= cstart && idxn[j] < cend){
258b49de8d1SLois Curfman McInnes           col = idxn[j] - cstart;
259b49de8d1SLois Curfman McInnes           ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
260fa852ad4SSatish Balay         } else {
261905e6a2fSBarry Smith           if (!aij->colmap) {
262905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
263905e6a2fSBarry Smith           }
264aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2650f5bd95cSBarry Smith           ierr = PetscTableFind(aij->colmap,idxn[j]+1,&col);CHKERRQ(ierr);
266fa46199cSSatish Balay           col --;
267b1fc9764SSatish Balay #else
268905e6a2fSBarry Smith           col = aij->colmap[idxn[j]] - 1;
269b1fc9764SSatish Balay #endif
270e60e1c95SSatish Balay           if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
271d9d09a02SSatish Balay           else {
272b49de8d1SLois Curfman McInnes             ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
273b49de8d1SLois Curfman McInnes           }
274b49de8d1SLois Curfman McInnes         }
275b49de8d1SLois Curfman McInnes       }
276a8c6a408SBarry Smith     } else {
27729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
278b49de8d1SLois Curfman McInnes     }
279b49de8d1SLois Curfman McInnes   }
2803a40ed3dSBarry Smith   PetscFunctionReturn(0);
281b49de8d1SLois Curfman McInnes }
282bc5ccf88SSatish Balay 
2834a2ae208SSatish Balay #undef __FUNCT__
2844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIAIJ"
285dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
286bc5ccf88SSatish Balay {
287bc5ccf88SSatish Balay   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
288dfbe8321SBarry Smith   PetscErrorCode ierr;
289b1d57f15SBarry Smith   PetscInt       nstash,reallocs;
290bc5ccf88SSatish Balay   InsertMode     addv;
291bc5ccf88SSatish Balay 
292bc5ccf88SSatish Balay   PetscFunctionBegin;
293bc5ccf88SSatish Balay   if (aij->donotstash) {
294bc5ccf88SSatish Balay     PetscFunctionReturn(0);
295bc5ccf88SSatish Balay   }
296bc5ccf88SSatish Balay 
297bc5ccf88SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
298bc5ccf88SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
299bc5ccf88SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
30029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
301bc5ccf88SSatish Balay   }
302bc5ccf88SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
303bc5ccf88SSatish Balay 
304899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
3058798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
306ae15b995SBarry Smith   ierr = PetscInfo2(aij->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
307bc5ccf88SSatish Balay   PetscFunctionReturn(0);
308bc5ccf88SSatish Balay }
309bc5ccf88SSatish Balay 
3104a2ae208SSatish Balay #undef __FUNCT__
3114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIAIJ"
312dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
313bc5ccf88SSatish Balay {
314bc5ccf88SSatish Balay   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
31591c97fd4SSatish Balay   Mat_SeqAIJ     *a=(Mat_SeqAIJ *)aij->A->data;
3166849ba73SBarry Smith   PetscErrorCode ierr;
317b1d57f15SBarry Smith   PetscMPIInt    n;
318b1d57f15SBarry Smith   PetscInt       i,j,rstart,ncols,flg;
319b1d57f15SBarry Smith   PetscInt       *row,*col,other_disassembled;
32087828ca2SBarry Smith   PetscScalar    *val;
321bc5ccf88SSatish Balay   InsertMode     addv = mat->insertmode;
322bc5ccf88SSatish Balay 
32391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ *)aij->B->data' as B can be reset in disassembly */
324bc5ccf88SSatish Balay   PetscFunctionBegin;
325bc5ccf88SSatish Balay   if (!aij->donotstash) {
326a2d1c673SSatish Balay     while (1) {
3278798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
328a2d1c673SSatish Balay       if (!flg) break;
329a2d1c673SSatish Balay 
330bc5ccf88SSatish Balay       for (i=0; i<n;) {
331bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
332bc5ccf88SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
333bc5ccf88SSatish Balay         if (j < n) ncols = j-i;
334bc5ccf88SSatish Balay         else       ncols = n-i;
335bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
336bc5ccf88SSatish Balay         ierr = MatSetValues_MPIAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
337bc5ccf88SSatish Balay         i = j;
338bc5ccf88SSatish Balay       }
339bc5ccf88SSatish Balay     }
3408798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
341bc5ccf88SSatish Balay   }
3422f53aa61SHong Zhang   a->compressedrow.use     = PETSC_FALSE;
343bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->A,mode);CHKERRQ(ierr);
344bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->A,mode);CHKERRQ(ierr);
345bc5ccf88SSatish Balay 
346bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
347bc5ccf88SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
348bc5ccf88SSatish Balay   /*
349bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
350bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
351bc5ccf88SSatish Balay   */
352bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ*)aij->B->data)->nonew)  {
353bc5ccf88SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
354bc5ccf88SSatish Balay     if (mat->was_assembled && !other_disassembled) {
355bc5ccf88SSatish Balay       ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
356ad59fb31SSatish Balay     }
357ad59fb31SSatish Balay   }
358bc5ccf88SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
359bc5ccf88SSatish Balay     ierr = MatSetUpMultiply_MPIAIJ(mat);CHKERRQ(ierr);
360bc5ccf88SSatish Balay   }
361923f20ffSKris Buschelman   ierr = MatSetOption(aij->B,MAT_DO_NOT_USE_INODES);CHKERRQ(ierr);
36291c97fd4SSatish Balay   ((Mat_SeqAIJ *)aij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
363bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->B,mode);CHKERRQ(ierr);
364bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->B,mode);CHKERRQ(ierr);
365bc5ccf88SSatish Balay 
366606d414cSSatish Balay   ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);
367606d414cSSatish Balay   aij->rowvalues = 0;
368a30b2313SHong Zhang 
369a30b2313SHong Zhang   /* used by MatAXPY() */
37091c97fd4SSatish Balay   a->xtoy = 0; ((Mat_SeqAIJ *)aij->B->data)->xtoy = 0;  /* b->xtoy = 0 */
37191c97fd4SSatish Balay   a->XtoY = 0; ((Mat_SeqAIJ *)aij->B->data)->XtoY = 0;  /* b->XtoY = 0 */
372a30b2313SHong Zhang 
373bc5ccf88SSatish Balay   PetscFunctionReturn(0);
374bc5ccf88SSatish Balay }
375bc5ccf88SSatish Balay 
3764a2ae208SSatish Balay #undef __FUNCT__
3774a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIAIJ"
378dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
3791eb62cbbSBarry Smith {
38044a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ*)A->data;
381dfbe8321SBarry Smith   PetscErrorCode ierr;
3823a40ed3dSBarry Smith 
3833a40ed3dSBarry Smith   PetscFunctionBegin;
38478b31e54SBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
38578b31e54SBarry Smith   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
3863a40ed3dSBarry Smith   PetscFunctionReturn(0);
3871eb62cbbSBarry Smith }
3881eb62cbbSBarry Smith 
3894a2ae208SSatish Balay #undef __FUNCT__
3904a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIAIJ"
391f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3921eb62cbbSBarry Smith {
39344a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ*)A->data;
3946849ba73SBarry Smith   PetscErrorCode ierr;
3956543fbbaSBarry Smith   PetscMPIInt    size = l->size,imdex,n,rank = l->rank,tag = A->tag,lastidx = -1;
396899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
397b1d57f15SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
398b1d57f15SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
399b1d57f15SBarry Smith   PetscInt       *rvalues,count,base,slen,*source;
400899cda47SBarry Smith   PetscInt       *lens,*lrows,*values,rstart=A->rmap.rstart;
401d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
4021eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
4031eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
4046543fbbaSBarry Smith #if defined(PETSC_DEBUG)
4056543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
4066543fbbaSBarry Smith #endif
4071eb62cbbSBarry Smith 
4083a40ed3dSBarry Smith   PetscFunctionBegin;
4091eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
410b1d57f15SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
411b1d57f15SBarry Smith   ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
412b1d57f15SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
4136543fbbaSBarry Smith   j = 0;
4141eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4156543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
4166543fbbaSBarry Smith     lastidx = idx;
4176543fbbaSBarry Smith     for (; j<size; j++) {
4181eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
4196543fbbaSBarry Smith         nprocs[2*j]++;
4206543fbbaSBarry Smith         nprocs[2*j+1] = 1;
4216543fbbaSBarry Smith         owner[i] = j;
4226543fbbaSBarry Smith #if defined(PETSC_DEBUG)
4236543fbbaSBarry Smith         found = PETSC_TRUE;
4246543fbbaSBarry Smith #endif
4256543fbbaSBarry Smith         break;
4261eb62cbbSBarry Smith       }
4271eb62cbbSBarry Smith     }
4286543fbbaSBarry Smith #if defined(PETSC_DEBUG)
42929bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
4306543fbbaSBarry Smith     found = PETSC_FALSE;
4316543fbbaSBarry Smith #endif
4321eb62cbbSBarry Smith   }
433c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
4341eb62cbbSBarry Smith 
4351eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
436c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
4371eb62cbbSBarry Smith 
4381eb62cbbSBarry Smith   /* post receives:   */
439b1d57f15SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
440b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
4411eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
442b1d57f15SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
4431eb62cbbSBarry Smith   }
4441eb62cbbSBarry Smith 
4451eb62cbbSBarry Smith   /* do sends:
4461eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
4471eb62cbbSBarry Smith          the ith processor
4481eb62cbbSBarry Smith   */
449b1d57f15SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
450b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
451b1d57f15SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
4521eb62cbbSBarry Smith   starts[0] = 0;
453c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4541eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4551eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
4561eb62cbbSBarry Smith   }
4571eb62cbbSBarry Smith 
4581eb62cbbSBarry Smith   starts[0] = 0;
459c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4601eb62cbbSBarry Smith   count = 0;
46117699dbbSLois Curfman McInnes   for (i=0; i<size; i++) {
462c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
463b1d57f15SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4641eb62cbbSBarry Smith     }
4651eb62cbbSBarry Smith   }
466606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
4671eb62cbbSBarry Smith 
46817699dbbSLois Curfman McInnes   base = owners[rank];
4691eb62cbbSBarry Smith 
4701eb62cbbSBarry Smith   /*  wait on receives */
471b1d57f15SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
4721eb62cbbSBarry Smith   source = lens + nrecvs;
4731eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
4741eb62cbbSBarry Smith   while (count) {
475ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4761eb62cbbSBarry Smith     /* unpack receives into our local space */
477b1d57f15SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
478d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
479d6dfbf8fSBarry Smith     lens[imdex]    = n;
4801eb62cbbSBarry Smith     slen          += n;
4811eb62cbbSBarry Smith     count--;
4821eb62cbbSBarry Smith   }
483606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4841eb62cbbSBarry Smith 
4851eb62cbbSBarry Smith   /* move the data into the send scatter */
486b1d57f15SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4871eb62cbbSBarry Smith   count = 0;
4881eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
4891eb62cbbSBarry Smith     values = rvalues + i*nmax;
4901eb62cbbSBarry Smith     for (j=0; j<lens[i]; j++) {
4911eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
4921eb62cbbSBarry Smith     }
4931eb62cbbSBarry Smith   }
494606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
495606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
496606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
497606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4981eb62cbbSBarry Smith 
4991eb62cbbSBarry Smith   /* actually zap the local rows */
5006eb55b6aSBarry Smith   /*
5016eb55b6aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
502a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
5036eb55b6aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
5046eb55b6aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
5056eb55b6aSBarry Smith 
506f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
5076eb55b6aSBarry Smith   */
508e2d53e46SBarry Smith   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
509f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->B,slen,lrows,0.0);CHKERRQ(ierr);
510899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
511f4df32b1SMatthew Knepley     ierr      = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
512f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
513f4df32b1SMatthew Knepley     ierr = MatZeroRows(l->A,slen,lrows,0.0);CHKERRQ(ierr);
514fa46199cSSatish Balay     if (((Mat_SeqAIJ*)l->A->data)->nonew) {
51529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options\n\
516fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
5176525c446SSatish Balay     }
518e2d53e46SBarry Smith     for (i = 0; i < slen; i++) {
519e2d53e46SBarry Smith       row  = lrows[i] + rstart;
520f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
521e2d53e46SBarry Smith     }
522e2d53e46SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
523e2d53e46SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5246eb55b6aSBarry Smith   } else {
525f4df32b1SMatthew Knepley     ierr = MatZeroRows(l->A,slen,lrows,0.0);CHKERRQ(ierr);
5266eb55b6aSBarry Smith   }
527606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
52872dacd9aSBarry Smith 
5291eb62cbbSBarry Smith   /* wait on sends */
5301eb62cbbSBarry Smith   if (nsends) {
531b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
532ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
533606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
5341eb62cbbSBarry Smith   }
535606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
536606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
5371eb62cbbSBarry Smith 
5383a40ed3dSBarry Smith   PetscFunctionReturn(0);
5391eb62cbbSBarry Smith }
5401eb62cbbSBarry Smith 
5414a2ae208SSatish Balay #undef __FUNCT__
5424a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIAIJ"
543dfbe8321SBarry Smith PetscErrorCode MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
5441eb62cbbSBarry Smith {
545416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
546dfbe8321SBarry Smith   PetscErrorCode ierr;
547b1d57f15SBarry Smith   PetscInt       nt;
548416022c9SBarry Smith 
5493a40ed3dSBarry Smith   PetscFunctionBegin;
550a2ce50c7SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
551899cda47SBarry Smith   if (nt != A->cmap.n) {
552899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap.n,nt);
553fbd6ef76SBarry Smith   }
55443a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
555f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
55643a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
557f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
5583a40ed3dSBarry Smith   PetscFunctionReturn(0);
5591eb62cbbSBarry Smith }
5601eb62cbbSBarry Smith 
5614a2ae208SSatish Balay #undef __FUNCT__
5624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIAIJ"
563dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
564da3a660dSBarry Smith {
565416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
566dfbe8321SBarry Smith   PetscErrorCode ierr;
5673a40ed3dSBarry Smith 
5683a40ed3dSBarry Smith   PetscFunctionBegin;
56943a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
570f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
57143a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
572f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
5733a40ed3dSBarry Smith   PetscFunctionReturn(0);
574da3a660dSBarry Smith }
575da3a660dSBarry Smith 
5764a2ae208SSatish Balay #undef __FUNCT__
5774a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIAIJ"
578dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIAIJ(Mat A,Vec xx,Vec yy)
579da3a660dSBarry Smith {
580416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
581dfbe8321SBarry Smith   PetscErrorCode ierr;
582a5ff213dSBarry Smith   PetscTruth     merged;
583da3a660dSBarry Smith 
5843a40ed3dSBarry Smith   PetscFunctionBegin;
585a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
586da3a660dSBarry Smith   /* do nondiagonal part */
5877c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
588a5ff213dSBarry Smith   if (!merged) {
589da3a660dSBarry Smith     /* send it on its way */
590537820f0SBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
591da3a660dSBarry Smith     /* do local part */
5927c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
593da3a660dSBarry Smith     /* receive remote parts: note this assumes the values are not actually */
594a5ff213dSBarry Smith     /* added in yy until the next line, */
595537820f0SBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
596a5ff213dSBarry Smith   } else {
597a5ff213dSBarry Smith     /* do local part */
598a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
599a5ff213dSBarry Smith     /* send it on its way */
600a5ff213dSBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
601a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
602a5ff213dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
603a5ff213dSBarry Smith   }
6043a40ed3dSBarry Smith   PetscFunctionReturn(0);
605da3a660dSBarry Smith }
606da3a660dSBarry Smith 
607cd0d46ebSvictorle EXTERN_C_BEGIN
608cd0d46ebSvictorle #undef __FUNCT__
6095fbd3699SBarry Smith #define __FUNCT__ "MatIsTranspose_MPIAIJ"
61013c77408SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatIsTranspose_MPIAIJ(Mat Amat,Mat Bmat,PetscReal tol,PetscTruth *f)
611cd0d46ebSvictorle {
6124f423910Svictorle   MPI_Comm       comm;
613cd0d46ebSvictorle   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *) Amat->data, *Bij;
61466501d38Svictorle   Mat            Adia = Aij->A, Bdia, Aoff,Boff,*Aoffs,*Boffs;
615cd0d46ebSvictorle   IS             Me,Notme;
6166849ba73SBarry Smith   PetscErrorCode ierr;
617b1d57f15SBarry Smith   PetscInt       M,N,first,last,*notme,i;
618b1d57f15SBarry Smith   PetscMPIInt    size;
619cd0d46ebSvictorle 
620cd0d46ebSvictorle   PetscFunctionBegin;
62142e5f5b4Svictorle 
62242e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
62366501d38Svictorle   Bij = (Mat_MPIAIJ *) Bmat->data; Bdia = Bij->A;
6245485867bSBarry Smith   ierr = MatIsTranspose(Adia,Bdia,tol,f);CHKERRQ(ierr);
625cd0d46ebSvictorle   if (!*f) PetscFunctionReturn(0);
6264f423910Svictorle   ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr);
627b1d57f15SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
628b1d57f15SBarry Smith   if (size == 1) PetscFunctionReturn(0);
62942e5f5b4Svictorle 
63042e5f5b4Svictorle   /* Hard test: off-diagonal block. This takes a MatGetSubMatrix. */
631cd0d46ebSvictorle   ierr = MatGetSize(Amat,&M,&N);CHKERRQ(ierr);
632cd0d46ebSvictorle   ierr = MatGetOwnershipRange(Amat,&first,&last);CHKERRQ(ierr);
633b1d57f15SBarry Smith   ierr = PetscMalloc((N-last+first)*sizeof(PetscInt),&notme);CHKERRQ(ierr);
634cd0d46ebSvictorle   for (i=0; i<first; i++) notme[i] = i;
635cd0d46ebSvictorle   for (i=last; i<M; i++) notme[i-last+first] = i;
636268466fbSBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,&Notme);CHKERRQ(ierr);
637268466fbSBarry Smith   ierr = ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me);CHKERRQ(ierr);
638268466fbSBarry Smith   ierr = MatGetSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs);CHKERRQ(ierr);
63966501d38Svictorle   Aoff = Aoffs[0];
640268466fbSBarry Smith   ierr = MatGetSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs);CHKERRQ(ierr);
64166501d38Svictorle   Boff = Boffs[0];
6425485867bSBarry Smith   ierr = MatIsTranspose(Aoff,Boff,tol,f);CHKERRQ(ierr);
64366501d38Svictorle   ierr = MatDestroyMatrices(1,&Aoffs);CHKERRQ(ierr);
64466501d38Svictorle   ierr = MatDestroyMatrices(1,&Boffs);CHKERRQ(ierr);
64542e5f5b4Svictorle   ierr = ISDestroy(Me);CHKERRQ(ierr);
64642e5f5b4Svictorle   ierr = ISDestroy(Notme);CHKERRQ(ierr);
64742e5f5b4Svictorle 
648cd0d46ebSvictorle   PetscFunctionReturn(0);
649cd0d46ebSvictorle }
650cd0d46ebSvictorle EXTERN_C_END
651cd0d46ebSvictorle 
6524a2ae208SSatish Balay #undef __FUNCT__
6534a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIAIJ"
654dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
655da3a660dSBarry Smith {
656416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
657dfbe8321SBarry Smith   PetscErrorCode ierr;
658da3a660dSBarry Smith 
6593a40ed3dSBarry Smith   PetscFunctionBegin;
660da3a660dSBarry Smith   /* do nondiagonal part */
6617c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
662da3a660dSBarry Smith   /* send it on its way */
663537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
664da3a660dSBarry Smith   /* do local part */
6657c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
666a5ff213dSBarry Smith   /* receive remote parts */
6670a198c4cSBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6683a40ed3dSBarry Smith   PetscFunctionReturn(0);
669da3a660dSBarry Smith }
670da3a660dSBarry Smith 
6711eb62cbbSBarry Smith /*
6721eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
6731eb62cbbSBarry Smith    diagonal block
6741eb62cbbSBarry Smith */
6754a2ae208SSatish Balay #undef __FUNCT__
6764a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIAIJ"
677dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A,Vec v)
6781eb62cbbSBarry Smith {
679dfbe8321SBarry Smith   PetscErrorCode ierr;
680416022c9SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
6813a40ed3dSBarry Smith 
6823a40ed3dSBarry Smith   PetscFunctionBegin;
683899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
684899cda47SBarry Smith   if (A->rmap.rstart != A->cmap.rstart || A->rmap.rend != A->cmap.rend) {
68529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"row partition must equal col partition");
6863a40ed3dSBarry Smith   }
6873a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
6883a40ed3dSBarry Smith   PetscFunctionReturn(0);
6891eb62cbbSBarry Smith }
6901eb62cbbSBarry Smith 
6914a2ae208SSatish Balay #undef __FUNCT__
6924a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIAIJ"
693f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIAIJ(Mat A,PetscScalar aa)
694052efed2SBarry Smith {
695052efed2SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
696dfbe8321SBarry Smith   PetscErrorCode ierr;
6973a40ed3dSBarry Smith 
6983a40ed3dSBarry Smith   PetscFunctionBegin;
699f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
700f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
7013a40ed3dSBarry Smith   PetscFunctionReturn(0);
702052efed2SBarry Smith }
703052efed2SBarry Smith 
7044a2ae208SSatish Balay #undef __FUNCT__
7054a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIAIJ"
706dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
7071eb62cbbSBarry Smith {
70844a69424SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
709dfbe8321SBarry Smith   PetscErrorCode ierr;
71083e2fdc7SBarry Smith 
7113a40ed3dSBarry Smith   PetscFunctionBegin;
712aa482453SBarry Smith #if defined(PETSC_USE_LOG)
713899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N);
714a5a9c739SBarry Smith #endif
7158798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
71678b31e54SBarry Smith   ierr = MatDestroy(aij->A);CHKERRQ(ierr);
71778b31e54SBarry Smith   ierr = MatDestroy(aij->B);CHKERRQ(ierr);
718aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7190f5bd95cSBarry Smith   if (aij->colmap) {ierr = PetscTableDelete(aij->colmap);CHKERRQ(ierr);}
720b1fc9764SSatish Balay #else
72105b42c5fSBarry Smith   ierr = PetscFree(aij->colmap);CHKERRQ(ierr);
722b1fc9764SSatish Balay #endif
72305b42c5fSBarry Smith   ierr = PetscFree(aij->garray);CHKERRQ(ierr);
7247c922b88SBarry Smith   if (aij->lvec)   {ierr = VecDestroy(aij->lvec);CHKERRQ(ierr);}
7257c922b88SBarry Smith   if (aij->Mvctx)  {ierr = VecScatterDestroy(aij->Mvctx);CHKERRQ(ierr);}
72605b42c5fSBarry Smith   ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);
727606d414cSSatish Balay   ierr = PetscFree(aij);CHKERRQ(ierr);
728901853e0SKris Buschelman 
729dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
730901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
731901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
732901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
733901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C","",PETSC_NULL);CHKERRQ(ierr);
734901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
735ff69c46cSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
736901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
7373a40ed3dSBarry Smith   PetscFunctionReturn(0);
7381eb62cbbSBarry Smith }
739ee50ffe9SBarry Smith 
7404a2ae208SSatish Balay #undef __FUNCT__
7418e2fed03SBarry Smith #define __FUNCT__ "MatView_MPIAIJ_Binary"
742dfbe8321SBarry Smith PetscErrorCode MatView_MPIAIJ_Binary(Mat mat,PetscViewer viewer)
7438e2fed03SBarry Smith {
7448e2fed03SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)mat->data;
7458e2fed03SBarry Smith   Mat_SeqAIJ*       A = (Mat_SeqAIJ*)aij->A->data;
7468e2fed03SBarry Smith   Mat_SeqAIJ*       B = (Mat_SeqAIJ*)aij->B->data;
7476849ba73SBarry Smith   PetscErrorCode    ierr;
74832dcc486SBarry Smith   PetscMPIInt       rank,size,tag = ((PetscObject)viewer)->tag;
7496f69ff64SBarry Smith   int               fd;
750a788621eSSatish Balay   PetscInt          nz,header[4],*row_lengths,*range=0,rlen,i;
751899cda47SBarry Smith   PetscInt          nzmax,*column_indices,j,k,col,*garray = aij->garray,cnt,cstart = mat->cmap.rstart,rnz;
7528e2fed03SBarry Smith   PetscScalar       *column_values;
7538e2fed03SBarry Smith 
7548e2fed03SBarry Smith   PetscFunctionBegin;
7558e2fed03SBarry Smith   ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
7568e2fed03SBarry Smith   ierr = MPI_Comm_size(mat->comm,&size);CHKERRQ(ierr);
7578e2fed03SBarry Smith   nz   = A->nz + B->nz;
758958c9bccSBarry Smith   if (!rank) {
7598e2fed03SBarry Smith     header[0] = MAT_FILE_COOKIE;
760899cda47SBarry Smith     header[1] = mat->rmap.N;
761899cda47SBarry Smith     header[2] = mat->cmap.N;
762b1d57f15SBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,mat->comm);CHKERRQ(ierr);
7638e2fed03SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
7646f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
7658e2fed03SBarry Smith     /* get largest number of rows any processor has */
766899cda47SBarry Smith     rlen = mat->rmap.n;
767357abbc8SBarry Smith     range = mat->rmap.range;
7688e2fed03SBarry Smith     for (i=1; i<size; i++) {
7698e2fed03SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
7708e2fed03SBarry Smith     }
7718e2fed03SBarry Smith   } else {
772b1d57f15SBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,mat->comm);CHKERRQ(ierr);
773899cda47SBarry Smith     rlen = mat->rmap.n;
7748e2fed03SBarry Smith   }
7758e2fed03SBarry Smith 
7768e2fed03SBarry Smith   /* load up the local row counts */
777b1d57f15SBarry Smith   ierr = PetscMalloc((rlen+1)*sizeof(PetscInt),&row_lengths);CHKERRQ(ierr);
778899cda47SBarry Smith   for (i=0; i<mat->rmap.n; i++) {
7798e2fed03SBarry Smith     row_lengths[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
7808e2fed03SBarry Smith   }
7818e2fed03SBarry Smith 
7828e2fed03SBarry Smith   /* store the row lengths to the file */
783958c9bccSBarry Smith   if (!rank) {
7848e2fed03SBarry Smith     MPI_Status status;
785899cda47SBarry Smith     ierr = PetscBinaryWrite(fd,row_lengths,mat->rmap.n,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
7868e2fed03SBarry Smith     for (i=1; i<size; i++) {
7878e2fed03SBarry Smith       rlen = range[i+1] - range[i];
788b1d57f15SBarry Smith       ierr = MPI_Recv(row_lengths,rlen,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
7896f69ff64SBarry Smith       ierr = PetscBinaryWrite(fd,row_lengths,rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
7908e2fed03SBarry Smith     }
7918e2fed03SBarry Smith   } else {
792899cda47SBarry Smith     ierr = MPI_Send(row_lengths,mat->rmap.n,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
7938e2fed03SBarry Smith   }
7948e2fed03SBarry Smith   ierr = PetscFree(row_lengths);CHKERRQ(ierr);
7958e2fed03SBarry Smith 
7968e2fed03SBarry Smith   /* load up the local column indices */
7978e2fed03SBarry Smith   nzmax = nz; /* )th processor needs space a largest processor needs */
798b1d57f15SBarry Smith   ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,mat->comm);CHKERRQ(ierr);
799b1d57f15SBarry Smith   ierr = PetscMalloc((nzmax+1)*sizeof(PetscInt),&column_indices);CHKERRQ(ierr);
8008e2fed03SBarry Smith   cnt  = 0;
801899cda47SBarry Smith   for (i=0; i<mat->rmap.n; i++) {
8028e2fed03SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
8038e2fed03SBarry Smith       if ( (col = garray[B->j[j]]) > cstart) break;
8048e2fed03SBarry Smith       column_indices[cnt++] = col;
8058e2fed03SBarry Smith     }
8068e2fed03SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
8078e2fed03SBarry Smith       column_indices[cnt++] = A->j[k] + cstart;
8088e2fed03SBarry Smith     }
8098e2fed03SBarry Smith     for (; j<B->i[i+1]; j++) {
8108e2fed03SBarry Smith       column_indices[cnt++] = garray[B->j[j]];
8118e2fed03SBarry Smith     }
8128e2fed03SBarry Smith   }
81377431f27SBarry Smith   if (cnt != A->nz + B->nz) SETERRQ2(PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,A->nz+B->nz);
8148e2fed03SBarry Smith 
8158e2fed03SBarry Smith   /* store the column indices to the file */
816958c9bccSBarry Smith   if (!rank) {
8178e2fed03SBarry Smith     MPI_Status status;
8186f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
8198e2fed03SBarry Smith     for (i=1; i<size; i++) {
820b1d57f15SBarry Smith       ierr = MPI_Recv(&rnz,1,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
82177431f27SBarry Smith       if (rnz > nzmax) SETERRQ2(PETSC_ERR_LIB,"Internal PETSc error: nz = %D nzmax = %D",nz,nzmax);
822b1d57f15SBarry Smith       ierr = MPI_Recv(column_indices,rnz,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
8236f69ff64SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,rnz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
8248e2fed03SBarry Smith     }
8258e2fed03SBarry Smith   } else {
826b1d57f15SBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
827b1d57f15SBarry Smith     ierr = MPI_Send(column_indices,nz,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
8288e2fed03SBarry Smith   }
8298e2fed03SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
8308e2fed03SBarry Smith 
8318e2fed03SBarry Smith   /* load up the local column values */
8328e2fed03SBarry Smith   ierr = PetscMalloc((nzmax+1)*sizeof(PetscScalar),&column_values);CHKERRQ(ierr);
8338e2fed03SBarry Smith   cnt  = 0;
834899cda47SBarry Smith   for (i=0; i<mat->rmap.n; i++) {
8358e2fed03SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
8368e2fed03SBarry Smith       if ( garray[B->j[j]] > cstart) break;
8378e2fed03SBarry Smith       column_values[cnt++] = B->a[j];
8388e2fed03SBarry Smith     }
8398e2fed03SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
8408e2fed03SBarry Smith       column_values[cnt++] = A->a[k];
8418e2fed03SBarry Smith     }
8428e2fed03SBarry Smith     for (; j<B->i[i+1]; j++) {
8438e2fed03SBarry Smith       column_values[cnt++] = B->a[j];
8448e2fed03SBarry Smith     }
8458e2fed03SBarry Smith   }
84677431f27SBarry Smith   if (cnt != A->nz + B->nz) SETERRQ2(PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,A->nz+B->nz);
8478e2fed03SBarry Smith 
8488e2fed03SBarry Smith   /* store the column values to the file */
849958c9bccSBarry Smith   if (!rank) {
8508e2fed03SBarry Smith     MPI_Status status;
8516f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
8528e2fed03SBarry Smith     for (i=1; i<size; i++) {
853b1d57f15SBarry Smith       ierr = MPI_Recv(&rnz,1,MPIU_INT,i,tag,mat->comm,&status);CHKERRQ(ierr);
85477431f27SBarry Smith       if (rnz > nzmax) SETERRQ2(PETSC_ERR_LIB,"Internal PETSc error: nz = %D nzmax = %D",nz,nzmax);
855b021249fSBarry Smith       ierr = MPI_Recv(column_values,rnz,MPIU_SCALAR,i,tag,mat->comm,&status);CHKERRQ(ierr);
8566f69ff64SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,rnz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
8578e2fed03SBarry Smith     }
8588e2fed03SBarry Smith   } else {
859b1d57f15SBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,mat->comm);CHKERRQ(ierr);
8608e2fed03SBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,mat->comm);CHKERRQ(ierr);
8618e2fed03SBarry Smith   }
8628e2fed03SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
8638e2fed03SBarry Smith   PetscFunctionReturn(0);
8648e2fed03SBarry Smith }
8658e2fed03SBarry Smith 
8668e2fed03SBarry Smith #undef __FUNCT__
8674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ_ASCIIorDraworSocket"
868dfbe8321SBarry Smith PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
869416022c9SBarry Smith {
87044a69424SLois Curfman McInnes   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)mat->data;
871dfbe8321SBarry Smith   PetscErrorCode    ierr;
87232dcc486SBarry Smith   PetscMPIInt       rank = aij->rank,size = aij->size;
873d38fa0fbSBarry Smith   PetscTruth        isdraw,iascii,isbinary;
874b0a32e0cSBarry Smith   PetscViewer       sviewer;
875f3ef73ceSBarry Smith   PetscViewerFormat format;
876416022c9SBarry Smith 
8773a40ed3dSBarry Smith   PetscFunctionBegin;
878fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
87932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
8808e2fed03SBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
88132077d6dSBarry Smith   if (iascii) {
882b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
883456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
8844e220ebcSLois Curfman McInnes       MatInfo    info;
885923f20ffSKris Buschelman       PetscTruth inodes;
886923f20ffSKris Buschelman 
8871dab6e02SBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
888888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
889923f20ffSKris Buschelman       ierr = MatInodeGetInodeSizes(aij->A,PETSC_NULL,(PetscInt **)&inodes,PETSC_NULL);CHKERRQ(ierr);
890923f20ffSKris Buschelman       if (!inodes) {
89177431f27SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D mem %D, not using I-node routines\n",
892899cda47SBarry Smith 					      rank,mat->rmap.n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
8936831982aSBarry Smith       } else {
89477431f27SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D mem %D, using I-node routines\n",
895899cda47SBarry Smith 		    rank,mat->rmap.n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
8966831982aSBarry Smith       }
897888f2ed8SSatish Balay       ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
89877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
899888f2ed8SSatish Balay       ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
90077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
901b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
902a40aa06bSLois Curfman McInnes       ierr = VecScatterView(aij->Mvctx,viewer);CHKERRQ(ierr);
9033a40ed3dSBarry Smith       PetscFunctionReturn(0);
904fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
905923f20ffSKris Buschelman       PetscInt   inodecount,inodelimit,*inodes;
906923f20ffSKris Buschelman       ierr = MatInodeGetInodeSizes(aij->A,&inodecount,&inodes,&inodelimit);CHKERRQ(ierr);
907923f20ffSKris Buschelman       if (inodes) {
908923f20ffSKris Buschelman         ierr = PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %D nodes, limit used is %D\n",inodecount,inodelimit);CHKERRQ(ierr);
909d38fa0fbSBarry Smith       } else {
910d38fa0fbSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n");CHKERRQ(ierr);
911d38fa0fbSBarry Smith       }
9123a40ed3dSBarry Smith       PetscFunctionReturn(0);
9134aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9144aedb280SBarry Smith       PetscFunctionReturn(0);
91508480c60SBarry Smith     }
9168e2fed03SBarry Smith   } else if (isbinary) {
9178e2fed03SBarry Smith     if (size == 1) {
9188e2fed03SBarry Smith       ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr);
9198e2fed03SBarry Smith       ierr = MatView(aij->A,viewer);CHKERRQ(ierr);
9208e2fed03SBarry Smith     } else {
9218e2fed03SBarry Smith       ierr = MatView_MPIAIJ_Binary(mat,viewer);CHKERRQ(ierr);
9228e2fed03SBarry Smith     }
9238e2fed03SBarry Smith     PetscFunctionReturn(0);
9240f5bd95cSBarry Smith   } else if (isdraw) {
925b0a32e0cSBarry Smith     PetscDraw  draw;
92619bcc07fSBarry Smith     PetscTruth isnull;
927b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
928b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
92919bcc07fSBarry Smith   }
93019bcc07fSBarry Smith 
93117699dbbSLois Curfman McInnes   if (size == 1) {
932e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr);
93378b31e54SBarry Smith     ierr = MatView(aij->A,viewer);CHKERRQ(ierr);
9343a40ed3dSBarry Smith   } else {
93595373324SBarry Smith     /* assemble the entire matrix onto first processor. */
93695373324SBarry Smith     Mat         A;
937ec8511deSBarry Smith     Mat_SeqAIJ  *Aloc;
938899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,m,*ai,*aj,row,*cols,i,*ct;
93987828ca2SBarry Smith     PetscScalar *a;
9402ee70a88SLois Curfman McInnes 
941f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
94217699dbbSLois Curfman McInnes     if (!rank) {
943f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
9443a40ed3dSBarry Smith     } else {
945f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
94695373324SBarry Smith     }
947f204ca49SKris Buschelman     /* This is just a temporary matrix, so explicitly using MATMPIAIJ is probably best */
948f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIAIJ);CHKERRQ(ierr);
949f204ca49SKris Buschelman     ierr = MatMPIAIJSetPreallocation(A,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
95052e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
951416022c9SBarry Smith 
95295373324SBarry Smith     /* copy over the A part */
953ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->A->data;
954899cda47SBarry Smith     m = aij->A->rmap.n; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
955899cda47SBarry Smith     row = mat->rmap.rstart;
956899cda47SBarry Smith     for (i=0; i<ai[m]; i++) {aj[i] += mat->cmap.rstart ;}
95795373324SBarry Smith     for (i=0; i<m; i++) {
958416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
95995373324SBarry Smith       row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
96095373324SBarry Smith     }
9612ee70a88SLois Curfman McInnes     aj = Aloc->j;
962899cda47SBarry Smith     for (i=0; i<ai[m]; i++) {aj[i] -= mat->cmap.rstart;}
96395373324SBarry Smith 
96495373324SBarry Smith     /* copy over the B part */
965ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->B->data;
966899cda47SBarry Smith     m    = aij->B->rmap.n;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
967899cda47SBarry Smith     row  = mat->rmap.rstart;
968b1d57f15SBarry Smith     ierr = PetscMalloc((ai[m]+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
969b0a32e0cSBarry Smith     ct   = cols;
970bfec09a0SHong Zhang     for (i=0; i<ai[m]; i++) {cols[i] = aij->garray[aj[i]];}
97195373324SBarry Smith     for (i=0; i<m; i++) {
972416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
97395373324SBarry Smith       row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
97495373324SBarry Smith     }
975606d414cSSatish Balay     ierr = PetscFree(ct);CHKERRQ(ierr);
9766d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9776d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
97855843e3eSBarry Smith     /*
97955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
980b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
98155843e3eSBarry Smith     */
982b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
983e03a110bSBarry Smith     if (!rank) {
984e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
9856831982aSBarry Smith       ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
98695373324SBarry Smith     }
987b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
98878b31e54SBarry Smith     ierr = MatDestroy(A);CHKERRQ(ierr);
98995373324SBarry Smith   }
9903a40ed3dSBarry Smith   PetscFunctionReturn(0);
9911eb62cbbSBarry Smith }
9921eb62cbbSBarry Smith 
9934a2ae208SSatish Balay #undef __FUNCT__
9944a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ"
995dfbe8321SBarry Smith PetscErrorCode MatView_MPIAIJ(Mat mat,PetscViewer viewer)
996416022c9SBarry Smith {
997dfbe8321SBarry Smith   PetscErrorCode ierr;
99832077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
999416022c9SBarry Smith 
10003a40ed3dSBarry Smith   PetscFunctionBegin;
100132077d6dSBarry Smith   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1002fb9695e5SSatish Balay   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1003fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1004b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
100532077d6dSBarry Smith   if (iascii || isdraw || isbinary || issocket) {
10067b2a1423SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10075cd90555SBarry Smith   } else {
100879a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIAIJ matrices",((PetscObject)viewer)->type_name);
1009416022c9SBarry Smith   }
10103a40ed3dSBarry Smith   PetscFunctionReturn(0);
1011416022c9SBarry Smith }
1012416022c9SBarry Smith 
10131eb62cbbSBarry Smith 
1014c14dc6b6SHong Zhang 
10154a2ae208SSatish Balay #undef __FUNCT__
10164a2ae208SSatish Balay #define __FUNCT__ "MatRelax_MPIAIJ"
1017b1d57f15SBarry Smith PetscErrorCode MatRelax_MPIAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
10188a729477SBarry Smith {
101944a69424SLois Curfman McInnes   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)matin->data;
1020dfbe8321SBarry Smith   PetscErrorCode ierr;
1021c14dc6b6SHong Zhang   Vec            bb1;
10228a729477SBarry Smith 
10233a40ed3dSBarry Smith   PetscFunctionBegin;
102477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1025c14dc6b6SHong Zhang 
1026c14dc6b6SHong Zhang   ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
10272798e883SHong Zhang 
1028c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
1029da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1030bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
10312798e883SHong Zhang       its--;
1032da3a660dSBarry Smith     }
10332798e883SHong Zhang 
10342798e883SHong Zhang     while (its--) {
10353a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10363a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10372798e883SHong Zhang 
1038c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
1039efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
1040c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
10412798e883SHong Zhang 
1042c14dc6b6SHong Zhang       /* local sweep */
1043bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);
1044c14dc6b6SHong Zhang       CHKERRQ(ierr);
10452798e883SHong Zhang     }
10463a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
1047da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1048c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
10492798e883SHong Zhang       its--;
1050da3a660dSBarry Smith     }
10512798e883SHong Zhang     while (its--) {
10523a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10533a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10542798e883SHong Zhang 
1055c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
1056efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
1057c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
1058c14dc6b6SHong Zhang 
1059c14dc6b6SHong Zhang       /* local sweep */
1060a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
1061c14dc6b6SHong Zhang       CHKERRQ(ierr);
10622798e883SHong Zhang     }
10633a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
1064da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1065c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
10662798e883SHong Zhang       its--;
1067da3a660dSBarry Smith     }
10682798e883SHong Zhang     while (its--) {
10692e8a6d31SBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10702e8a6d31SBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10712798e883SHong Zhang 
1072c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
1073efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
1074c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
10752798e883SHong Zhang 
1076c14dc6b6SHong Zhang       /* local sweep */
1077a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
1078c14dc6b6SHong Zhang       CHKERRQ(ierr);
10792798e883SHong Zhang     }
10803a40ed3dSBarry Smith   } else {
108129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Parallel SOR not supported");
1082c16cb8f2SBarry Smith   }
1083c14dc6b6SHong Zhang 
1084c14dc6b6SHong Zhang   ierr = VecDestroy(bb1);CHKERRQ(ierr);
10853a40ed3dSBarry Smith   PetscFunctionReturn(0);
10868a729477SBarry Smith }
1087a66be287SLois Curfman McInnes 
10884a2ae208SSatish Balay #undef __FUNCT__
108942e855d1Svictor #define __FUNCT__ "MatPermute_MPIAIJ"
109042e855d1Svictor PetscErrorCode MatPermute_MPIAIJ(Mat A,IS rowp,IS colp,Mat *B)
109142e855d1Svictor {
109242e855d1Svictor   MPI_Comm       comm,pcomm;
109342e855d1Svictor   PetscInt       first,local_size,nrows,*rows;
109442e855d1Svictor   int            ntids;
109542e855d1Svictor   IS             crowp,growp,irowp,lrowp,lcolp,icolp;
109642e855d1Svictor   PetscErrorCode ierr;
109742e855d1Svictor 
109842e855d1Svictor   PetscFunctionBegin;
109942e855d1Svictor   ierr = PetscObjectGetComm((PetscObject)A,&comm); CHKERRQ(ierr);
110042e855d1Svictor   /* make a collective version of 'rowp' */
110142e855d1Svictor   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm); CHKERRQ(ierr);
110242e855d1Svictor   if (pcomm==comm) {
110342e855d1Svictor     crowp = rowp;
110442e855d1Svictor   } else {
110542e855d1Svictor     ierr = ISGetSize(rowp,&nrows); CHKERRQ(ierr);
110642e855d1Svictor     ierr = ISGetIndices(rowp,&rows); CHKERRQ(ierr);
110742e855d1Svictor     ierr = ISCreateGeneral(comm,nrows,rows,&crowp); CHKERRQ(ierr);
110842e855d1Svictor     ierr = ISRestoreIndices(rowp,&rows); CHKERRQ(ierr);
110942e855d1Svictor   }
111042e855d1Svictor   /* collect the global row permutation and invert it */
111142e855d1Svictor   ierr = ISAllGather(crowp,&growp); CHKERRQ(ierr);
111242e855d1Svictor   ierr = ISSetPermutation(growp); CHKERRQ(ierr);
111342e855d1Svictor   if (pcomm!=comm) {
111442e855d1Svictor     ierr = ISDestroy(crowp); CHKERRQ(ierr);
111542e855d1Svictor   }
111642e855d1Svictor   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
111742e855d1Svictor   /* get the local target indices */
111842e855d1Svictor   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL); CHKERRQ(ierr);
111942e855d1Svictor   ierr = MatGetLocalSize(A,&local_size,PETSC_NULL); CHKERRQ(ierr);
112042e855d1Svictor   ierr = ISGetIndices(irowp,&rows); CHKERRQ(ierr);
112142e855d1Svictor   ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp); CHKERRQ(ierr);
112242e855d1Svictor   ierr = ISRestoreIndices(irowp,&rows); CHKERRQ(ierr);
112342e855d1Svictor   ierr = ISDestroy(irowp); CHKERRQ(ierr);
112442e855d1Svictor   /* the column permutation is so much easier;
112542e855d1Svictor      make a local version of 'colp' and invert it */
112642e855d1Svictor   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm); CHKERRQ(ierr);
112742e855d1Svictor   ierr = MPI_Comm_size(pcomm,&ntids); CHKERRQ(ierr);
112842e855d1Svictor   if (ntids==1) {
112942e855d1Svictor     lcolp = colp;
113042e855d1Svictor   } else {
113142e855d1Svictor     ierr = ISGetSize(colp,&nrows); CHKERRQ(ierr);
113242e855d1Svictor     ierr = ISGetIndices(colp,&rows); CHKERRQ(ierr);
113342e855d1Svictor     ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp); CHKERRQ(ierr);
113442e855d1Svictor   }
113542e855d1Svictor   ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp); CHKERRQ(ierr);
113642e855d1Svictor   ierr = ISSetPermutation(lcolp); CHKERRQ(ierr);
113742e855d1Svictor   if (ntids>1) {
113842e855d1Svictor     ierr = ISRestoreIndices(colp,&rows); CHKERRQ(ierr);
113942e855d1Svictor     ierr = ISDestroy(lcolp); CHKERRQ(ierr);
114042e855d1Svictor   }
114142e855d1Svictor   /* now we just get the submatrix */
114242e855d1Svictor   ierr = MatGetSubMatrix(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B); CHKERRQ(ierr);
114342e855d1Svictor   /* clean up */
114442e855d1Svictor   ierr = ISDestroy(lrowp); CHKERRQ(ierr);
114542e855d1Svictor   ierr = ISDestroy(icolp); CHKERRQ(ierr);
114642e855d1Svictor   PetscFunctionReturn(0);
114742e855d1Svictor }
114842e855d1Svictor 
114942e855d1Svictor #undef __FUNCT__
11504a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIAIJ"
1151dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1152a66be287SLois Curfman McInnes {
1153a66be287SLois Curfman McInnes   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)matin->data;
1154a66be287SLois Curfman McInnes   Mat            A = mat->A,B = mat->B;
1155dfbe8321SBarry Smith   PetscErrorCode ierr;
1156329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
1157a66be287SLois Curfman McInnes 
11583a40ed3dSBarry Smith   PetscFunctionBegin;
11594e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
11604e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
11614e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
11624e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
11634e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
11644e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
11654e220ebcSLois Curfman McInnes   isend[3] += info->memory;  isend[4] += info->mallocs;
1166a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
11674e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
11684e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
11694e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
11704e220ebcSLois Curfman McInnes     info->memory       = isend[3];
11714e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1172a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1173d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
11744e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
11754e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
11764e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
11774e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
11784e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1179a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1180d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
11814e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
11824e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
11834e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
11844e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
11854e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1186a66be287SLois Curfman McInnes   }
11874e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
11884e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
11894e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
1190899cda47SBarry Smith   info->rows_global       = (double)matin->rmap.N;
1191899cda47SBarry Smith   info->columns_global    = (double)matin->cmap.N;
1192899cda47SBarry Smith   info->rows_local        = (double)matin->rmap.n;
1193899cda47SBarry Smith   info->columns_local     = (double)matin->cmap.N;
11944e220ebcSLois Curfman McInnes 
11953a40ed3dSBarry Smith   PetscFunctionReturn(0);
1196a66be287SLois Curfman McInnes }
1197a66be287SLois Curfman McInnes 
11984a2ae208SSatish Balay #undef __FUNCT__
11994a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIAIJ"
1200dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIAIJ(Mat A,MatOption op)
1201c74985f6SBarry Smith {
1202c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
1203dfbe8321SBarry Smith   PetscErrorCode ierr;
1204c74985f6SBarry Smith 
12053a40ed3dSBarry Smith   PetscFunctionBegin;
120612c028f9SKris Buschelman   switch (op) {
120712c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
120812c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
120912c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
121012c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
121112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
121212c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
121312c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
121412c028f9SKris Buschelman   case MAT_USE_INODES:
121512c028f9SKris Buschelman   case MAT_DO_NOT_USE_INODES:
121612c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
12171dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
12181dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
121912c028f9SKris Buschelman     break;
122012c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
12217c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
12221dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
12231dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
122412c028f9SKris Buschelman     break;
122512c028f9SKris Buschelman   case MAT_ROWS_SORTED:
122612c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
122712c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1228290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
122912c028f9SKris Buschelman     break;
123012c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
12317c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
12321dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
12331dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
123412c028f9SKris Buschelman     break;
123512c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12367c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
123712c028f9SKris Buschelman     break;
123812c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
123929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
124077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
124125f421beSHong Zhang     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
124225f421beSHong Zhang     break;
124377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1244bf108f30SBarry Smith   case MAT_HERMITIAN:
1245bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1246bf108f30SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1247bf108f30SBarry Smith     break;
12489a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12499a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12509a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12519a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
125277e54ba9SKris Buschelman     break;
125312c028f9SKris Buschelman   default:
1254ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
12553a40ed3dSBarry Smith   }
12563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1257c74985f6SBarry Smith }
1258c74985f6SBarry Smith 
12594a2ae208SSatish Balay #undef __FUNCT__
12604a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIAIJ"
1261b1d57f15SBarry Smith PetscErrorCode MatGetRow_MPIAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
126239e00950SLois Curfman McInnes {
1263154123eaSLois Curfman McInnes   Mat_MPIAIJ     *mat = (Mat_MPIAIJ*)matin->data;
126487828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12656849ba73SBarry Smith   PetscErrorCode ierr;
1266899cda47SBarry Smith   PetscInt       i,*cworkA,*cworkB,**pcA,**pcB,cstart = matin->cmap.rstart;
1267899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,rstart = matin->rmap.rstart,rend = matin->rmap.rend;
1268b1d57f15SBarry Smith   PetscInt       *cmap,*idx_p;
126939e00950SLois Curfman McInnes 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
1271abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
12727a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
12737a0afa10SBarry Smith 
127470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
12757a0afa10SBarry Smith     /*
12767a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
12777a0afa10SBarry Smith     */
12787a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ*)mat->A->data,*Ba = (Mat_SeqAIJ*)mat->B->data;
1279b1d57f15SBarry Smith     PetscInt     max = 1,tmp;
1280899cda47SBarry Smith     for (i=0; i<matin->rmap.n; i++) {
12817a0afa10SBarry Smith       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
12827a0afa10SBarry Smith       if (max < tmp) { max = tmp; }
12837a0afa10SBarry Smith     }
1284b1d57f15SBarry Smith     ierr = PetscMalloc(max*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1285b1d57f15SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max);
12867a0afa10SBarry Smith   }
12877a0afa10SBarry Smith 
128829bbc08cSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Only local rows")
1289abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
129039e00950SLois Curfman McInnes 
1291154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1292154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1293154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1294f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1295f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1296154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1297154123eaSLois Curfman McInnes 
129870f0671dSBarry Smith   cmap  = mat->garray;
1299154123eaSLois Curfman McInnes   if (v  || idx) {
1300154123eaSLois Curfman McInnes     if (nztot) {
1301154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1302b1d57f15SBarry Smith       PetscInt imark = -1;
1303154123eaSLois Curfman McInnes       if (v) {
130470f0671dSBarry Smith         *v = v_p = mat->rowvalues;
130539e00950SLois Curfman McInnes         for (i=0; i<nzB; i++) {
130670f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart)   v_p[i] = vworkB[i];
1307154123eaSLois Curfman McInnes           else break;
1308154123eaSLois Curfman McInnes         }
1309154123eaSLois Curfman McInnes         imark = i;
131070f0671dSBarry Smith         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
131170f0671dSBarry Smith         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1312154123eaSLois Curfman McInnes       }
1313154123eaSLois Curfman McInnes       if (idx) {
131470f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
131570f0671dSBarry Smith         if (imark > -1) {
131670f0671dSBarry Smith           for (i=0; i<imark; i++) {
131770f0671dSBarry Smith             idx_p[i] = cmap[cworkB[i]];
131870f0671dSBarry Smith           }
131970f0671dSBarry Smith         } else {
1320154123eaSLois Curfman McInnes           for (i=0; i<nzB; i++) {
132170f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart)   idx_p[i] = cmap[cworkB[i]];
1322154123eaSLois Curfman McInnes             else break;
1323154123eaSLois Curfman McInnes           }
1324154123eaSLois Curfman McInnes           imark = i;
132570f0671dSBarry Smith         }
132670f0671dSBarry Smith         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart + cworkA[i];
132770f0671dSBarry Smith         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]];
132839e00950SLois Curfman McInnes       }
13293f97c4b0SBarry Smith     } else {
13301ca473b0SSatish Balay       if (idx) *idx = 0;
13311ca473b0SSatish Balay       if (v)   *v   = 0;
13321ca473b0SSatish Balay     }
1333154123eaSLois Curfman McInnes   }
133439e00950SLois Curfman McInnes   *nz = nztot;
1335f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1336f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13373a40ed3dSBarry Smith   PetscFunctionReturn(0);
133839e00950SLois Curfman McInnes }
133939e00950SLois Curfman McInnes 
13404a2ae208SSatish Balay #undef __FUNCT__
13414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIAIJ"
1342b1d57f15SBarry Smith PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
134339e00950SLois Curfman McInnes {
13447a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
13453a40ed3dSBarry Smith 
13463a40ed3dSBarry Smith   PetscFunctionBegin;
1347abc0a331SBarry Smith   if (!aij->getrowactive) {
1348abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
13497a0afa10SBarry Smith   }
13507a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
13513a40ed3dSBarry Smith   PetscFunctionReturn(0);
135239e00950SLois Curfman McInnes }
135339e00950SLois Curfman McInnes 
13544a2ae208SSatish Balay #undef __FUNCT__
13554a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIAIJ"
1356dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIAIJ(Mat mat,NormType type,PetscReal *norm)
1357855ac2c5SLois Curfman McInnes {
1358855ac2c5SLois Curfman McInnes   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
1359ec8511deSBarry Smith   Mat_SeqAIJ     *amat = (Mat_SeqAIJ*)aij->A->data,*bmat = (Mat_SeqAIJ*)aij->B->data;
1360dfbe8321SBarry Smith   PetscErrorCode ierr;
1361899cda47SBarry Smith   PetscInt       i,j,cstart = mat->cmap.rstart;
1362329f5518SBarry Smith   PetscReal      sum = 0.0;
136387828ca2SBarry Smith   PetscScalar    *v;
136404ca555eSLois Curfman McInnes 
13653a40ed3dSBarry Smith   PetscFunctionBegin;
136617699dbbSLois Curfman McInnes   if (aij->size == 1) {
136714183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm);CHKERRQ(ierr);
136837fa93a5SLois Curfman McInnes   } else {
136904ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
137004ca555eSLois Curfman McInnes       v = amat->a;
137104ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++) {
1372aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1373329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
137404ca555eSLois Curfman McInnes #else
137504ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
137604ca555eSLois Curfman McInnes #endif
137704ca555eSLois Curfman McInnes       }
137804ca555eSLois Curfman McInnes       v = bmat->a;
137904ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++) {
1380aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1381329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
138204ca555eSLois Curfman McInnes #else
138304ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
138404ca555eSLois Curfman McInnes #endif
138504ca555eSLois Curfman McInnes       }
1386d7d1e502SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
138704ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
13883a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1389329f5518SBarry Smith       PetscReal *tmp,*tmp2;
1390b1d57f15SBarry Smith       PetscInt    *jj,*garray = aij->garray;
1391899cda47SBarry Smith       ierr = PetscMalloc((mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
1392899cda47SBarry Smith       ierr = PetscMalloc((mat->cmap.N+1)*sizeof(PetscReal),&tmp2);CHKERRQ(ierr);
1393899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
139404ca555eSLois Curfman McInnes       *norm = 0.0;
139504ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
139604ca555eSLois Curfman McInnes       for (j=0; j<amat->nz; j++) {
1397bfec09a0SHong Zhang         tmp[cstart + *jj++ ] += PetscAbsScalar(*v);  v++;
139804ca555eSLois Curfman McInnes       }
139904ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
140004ca555eSLois Curfman McInnes       for (j=0; j<bmat->nz; j++) {
1401bfec09a0SHong Zhang         tmp[garray[*jj++]] += PetscAbsScalar(*v); v++;
140204ca555eSLois Curfman McInnes       }
1403899cda47SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
1404899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
140504ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
140604ca555eSLois Curfman McInnes       }
1407606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
1408606d414cSSatish Balay       ierr = PetscFree(tmp2);CHKERRQ(ierr);
14093a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1410329f5518SBarry Smith       PetscReal ntemp = 0.0;
1411899cda47SBarry Smith       for (j=0; j<aij->A->rmap.n; j++) {
1412bfec09a0SHong Zhang         v = amat->a + amat->i[j];
141304ca555eSLois Curfman McInnes         sum = 0.0;
141404ca555eSLois Curfman McInnes         for (i=0; i<amat->i[j+1]-amat->i[j]; i++) {
1415cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
141604ca555eSLois Curfman McInnes         }
1417bfec09a0SHong Zhang         v = bmat->a + bmat->i[j];
141804ca555eSLois Curfman McInnes         for (i=0; i<bmat->i[j+1]-bmat->i[j]; i++) {
1419cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
142004ca555eSLois Curfman McInnes         }
1421515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
142204ca555eSLois Curfman McInnes       }
1423d7d1e502SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
1424ca161407SBarry Smith     } else {
142529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
142604ca555eSLois Curfman McInnes     }
142737fa93a5SLois Curfman McInnes   }
14283a40ed3dSBarry Smith   PetscFunctionReturn(0);
1429855ac2c5SLois Curfman McInnes }
1430855ac2c5SLois Curfman McInnes 
14314a2ae208SSatish Balay #undef __FUNCT__
14324a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIAIJ"
1433dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIAIJ(Mat A,Mat *matout)
1434b7c46309SBarry Smith {
1435b7c46309SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
1436dbb450caSBarry Smith   Mat_SeqAIJ     *Aloc = (Mat_SeqAIJ*)a->A->data;
1437dfbe8321SBarry Smith   PetscErrorCode ierr;
1438899cda47SBarry Smith   PetscInt       M = A->rmap.N,N = A->cmap.N,m,*ai,*aj,row,*cols,i,*ct;
14393a40ed3dSBarry Smith   Mat            B;
144087828ca2SBarry Smith   PetscScalar    *array;
1441b7c46309SBarry Smith 
14423a40ed3dSBarry Smith   PetscFunctionBegin;
14437c922b88SBarry Smith   if (!matout && M != N) {
144429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1445d4bb536fSBarry Smith   }
1446d4bb536fSBarry Smith 
1447f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&B);CHKERRQ(ierr);
1448899cda47SBarry Smith   ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
1449f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1450f204ca49SKris Buschelman   ierr = MatMPIAIJSetPreallocation(B,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1451b7c46309SBarry Smith 
1452b7c46309SBarry Smith   /* copy over the A part */
1453ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->A->data;
1454899cda47SBarry Smith   m = a->A->rmap.n; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1455899cda47SBarry Smith   row = A->rmap.rstart;
1456899cda47SBarry Smith   for (i=0; i<ai[m]; i++) {aj[i] += A->cmap.rstart ;}
1457b7c46309SBarry Smith   for (i=0; i<m; i++) {
1458416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1459b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1460b7c46309SBarry Smith   }
1461b7c46309SBarry Smith   aj = Aloc->j;
1462899cda47SBarry Smith   for (i=0; i<ai[m]; i++) {aj[i] -= A->cmap.rstart ;}
1463b7c46309SBarry Smith 
1464b7c46309SBarry Smith   /* copy over the B part */
1465ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->B->data;
1466899cda47SBarry Smith   m = a->B->rmap.n;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1467899cda47SBarry Smith   row  = A->rmap.rstart;
1468b1d57f15SBarry Smith   ierr = PetscMalloc((1+ai[m])*sizeof(PetscInt),&cols);CHKERRQ(ierr);
1469b0a32e0cSBarry Smith   ct   = cols;
1470bfec09a0SHong Zhang   for (i=0; i<ai[m]; i++) {cols[i] = a->garray[aj[i]];}
1471b7c46309SBarry Smith   for (i=0; i<m; i++) {
1472416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1473b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1474b7c46309SBarry Smith   }
1475606d414cSSatish Balay   ierr = PetscFree(ct);CHKERRQ(ierr);
14766d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14776d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14787c922b88SBarry Smith   if (matout) {
14790de55854SLois Curfman McInnes     *matout = B;
14800de55854SLois Curfman McInnes   } else {
1481273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
14820de55854SLois Curfman McInnes   }
14833a40ed3dSBarry Smith   PetscFunctionReturn(0);
1484b7c46309SBarry Smith }
1485b7c46309SBarry Smith 
14864a2ae208SSatish Balay #undef __FUNCT__
14874a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIAIJ"
1488dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr)
1489a008b906SSatish Balay {
14904b967eb1SSatish Balay   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
14914b967eb1SSatish Balay   Mat            a = aij->A,b = aij->B;
1492dfbe8321SBarry Smith   PetscErrorCode ierr;
1493b1d57f15SBarry Smith   PetscInt       s1,s2,s3;
1494a008b906SSatish Balay 
14953a40ed3dSBarry Smith   PetscFunctionBegin;
14964b967eb1SSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
14974b967eb1SSatish Balay   if (rr) {
1498e1311b90SBarry Smith     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
149929bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
15004b967eb1SSatish Balay     /* Overlap communication with computation. */
150143a90d84SBarry Smith     ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1502a008b906SSatish Balay   }
15034b967eb1SSatish Balay   if (ll) {
1504e1311b90SBarry Smith     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
150529bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1506f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr);
15074b967eb1SSatish Balay   }
15084b967eb1SSatish Balay   /* scale  the diagonal block */
1509f830108cSBarry Smith   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
15104b967eb1SSatish Balay 
15114b967eb1SSatish Balay   if (rr) {
15124b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
151343a90d84SBarry Smith     ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1514f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,0,aij->lvec);CHKERRQ(ierr);
15154b967eb1SSatish Balay   }
15164b967eb1SSatish Balay 
15173a40ed3dSBarry Smith   PetscFunctionReturn(0);
1518a008b906SSatish Balay }
1519a008b906SSatish Balay 
15204a2ae208SSatish Balay #undef __FUNCT__
1521521d7252SBarry Smith #define __FUNCT__ "MatSetBlockSize_MPIAIJ"
1522521d7252SBarry Smith PetscErrorCode MatSetBlockSize_MPIAIJ(Mat A,PetscInt bs)
15235a838052SSatish Balay {
1524521d7252SBarry Smith   Mat_MPIAIJ     *a   = (Mat_MPIAIJ*)A->data;
1525521d7252SBarry Smith   PetscErrorCode ierr;
1526521d7252SBarry Smith 
15273a40ed3dSBarry Smith   PetscFunctionBegin;
1528521d7252SBarry Smith   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
1529521d7252SBarry Smith   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
15303a40ed3dSBarry Smith   PetscFunctionReturn(0);
15315a838052SSatish Balay }
15324a2ae208SSatish Balay #undef __FUNCT__
15334a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIAIJ"
1534dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
1535bb5a7306SBarry Smith {
1536bb5a7306SBarry Smith   Mat_MPIAIJ     *a   = (Mat_MPIAIJ*)A->data;
1537dfbe8321SBarry Smith   PetscErrorCode ierr;
15383a40ed3dSBarry Smith 
15393a40ed3dSBarry Smith   PetscFunctionBegin;
1540bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
15413a40ed3dSBarry Smith   PetscFunctionReturn(0);
1542bb5a7306SBarry Smith }
1543bb5a7306SBarry Smith 
15444a2ae208SSatish Balay #undef __FUNCT__
15454a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIAIJ"
1546dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIAIJ(Mat A,Mat B,PetscTruth *flag)
1547d4bb536fSBarry Smith {
1548d4bb536fSBarry Smith   Mat_MPIAIJ     *matB = (Mat_MPIAIJ*)B->data,*matA = (Mat_MPIAIJ*)A->data;
1549d4bb536fSBarry Smith   Mat            a,b,c,d;
1550d4bb536fSBarry Smith   PetscTruth     flg;
1551dfbe8321SBarry Smith   PetscErrorCode ierr;
1552d4bb536fSBarry Smith 
15533a40ed3dSBarry Smith   PetscFunctionBegin;
1554d4bb536fSBarry Smith   a = matA->A; b = matA->B;
1555d4bb536fSBarry Smith   c = matB->A; d = matB->B;
1556d4bb536fSBarry Smith 
1557d4bb536fSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1558abc0a331SBarry Smith   if (flg) {
1559d4bb536fSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1560d4bb536fSBarry Smith   }
1561ca161407SBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
15623a40ed3dSBarry Smith   PetscFunctionReturn(0);
1563d4bb536fSBarry Smith }
1564d4bb536fSBarry Smith 
15654a2ae208SSatish Balay #undef __FUNCT__
15664a2ae208SSatish Balay #define __FUNCT__ "MatCopy_MPIAIJ"
1567dfbe8321SBarry Smith PetscErrorCode MatCopy_MPIAIJ(Mat A,Mat B,MatStructure str)
1568cb5b572fSBarry Smith {
1569dfbe8321SBarry Smith   PetscErrorCode ierr;
1570cb5b572fSBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
1571cb5b572fSBarry Smith   Mat_MPIAIJ     *b = (Mat_MPIAIJ *)B->data;
1572cb5b572fSBarry Smith 
1573cb5b572fSBarry Smith   PetscFunctionBegin;
157433f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
157533f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1576cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
1577cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
1578cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
1579cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
1580cb5b572fSBarry Smith        then copying the submatrices */
1581cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1582cb5b572fSBarry Smith   } else {
1583cb5b572fSBarry Smith     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
1584cb5b572fSBarry Smith     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
1585cb5b572fSBarry Smith   }
1586cb5b572fSBarry Smith   PetscFunctionReturn(0);
1587cb5b572fSBarry Smith }
1588cb5b572fSBarry Smith 
15894a2ae208SSatish Balay #undef __FUNCT__
15904a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIAIJ"
1591dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIAIJ(Mat A)
1592273d9f13SBarry Smith {
1593dfbe8321SBarry Smith   PetscErrorCode ierr;
1594273d9f13SBarry Smith 
1595273d9f13SBarry Smith   PetscFunctionBegin;
1596273d9f13SBarry Smith   ierr =  MatMPIAIJSetPreallocation(A,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1597273d9f13SBarry Smith   PetscFunctionReturn(0);
1598273d9f13SBarry Smith }
1599273d9f13SBarry Smith 
1600ac90fabeSBarry Smith #include "petscblaslapack.h"
1601ac90fabeSBarry Smith #undef __FUNCT__
1602ac90fabeSBarry Smith #define __FUNCT__ "MatAXPY_MPIAIJ"
1603f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_MPIAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
1604ac90fabeSBarry Smith {
1605dfbe8321SBarry Smith   PetscErrorCode ierr;
1606b1d57f15SBarry Smith   PetscInt       i;
1607ac90fabeSBarry Smith   Mat_MPIAIJ     *xx = (Mat_MPIAIJ *)X->data,*yy = (Mat_MPIAIJ *)Y->data;
16084ce68768SBarry Smith   PetscBLASInt   bnz,one=1;
1609ac90fabeSBarry Smith   Mat_SeqAIJ     *x,*y;
1610ac90fabeSBarry Smith 
1611ac90fabeSBarry Smith   PetscFunctionBegin;
1612ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
1613f4df32b1SMatthew Knepley     PetscScalar alpha = a;
1614ac90fabeSBarry Smith     x = (Mat_SeqAIJ *)xx->A->data;
1615ac90fabeSBarry Smith     y = (Mat_SeqAIJ *)yy->A->data;
16164ce68768SBarry Smith     bnz = (PetscBLASInt)x->nz;
1617f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
1618ac90fabeSBarry Smith     x = (Mat_SeqAIJ *)xx->B->data;
1619ac90fabeSBarry Smith     y = (Mat_SeqAIJ *)yy->B->data;
16204ce68768SBarry Smith     bnz = (PetscBLASInt)x->nz;
1621f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
1622a30b2313SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) {
1623f4df32b1SMatthew Knepley     ierr = MatAXPY_SeqAIJ(yy->A,a,xx->A,str);CHKERRQ(ierr);
1624c537a176SHong Zhang 
1625c537a176SHong Zhang     x = (Mat_SeqAIJ *)xx->B->data;
1626a30b2313SHong Zhang     y = (Mat_SeqAIJ *)yy->B->data;
1627a30b2313SHong Zhang     if (y->xtoy && y->XtoY != xx->B) {
1628a30b2313SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
1629a30b2313SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
1630c537a176SHong Zhang     }
1631a30b2313SHong Zhang     if (!y->xtoy) { /* get xtoy */
1632899cda47SBarry Smith       ierr = MatAXPYGetxtoy_Private(xx->B->rmap.n,x->i,x->j,xx->garray,y->i,y->j,yy->garray,&y->xtoy);CHKERRQ(ierr);
1633a30b2313SHong Zhang       y->XtoY = xx->B;
1634c537a176SHong Zhang     }
1635f4df32b1SMatthew Knepley     for (i=0; i<x->nz; i++) y->a[y->xtoy[i]] += a*(x->a[i]);
1636ac90fabeSBarry Smith   } else {
1637f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1638ac90fabeSBarry Smith   }
1639ac90fabeSBarry Smith   PetscFunctionReturn(0);
1640ac90fabeSBarry Smith }
1641ac90fabeSBarry Smith 
1642354c94deSBarry Smith EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConjugate_SeqAIJ(Mat);
1643354c94deSBarry Smith 
1644354c94deSBarry Smith #undef __FUNCT__
1645354c94deSBarry Smith #define __FUNCT__ "MatConjugate_MPIAIJ"
1646354c94deSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConjugate_MPIAIJ(Mat mat)
1647354c94deSBarry Smith {
1648354c94deSBarry Smith #if defined(PETSC_USE_COMPLEX)
1649354c94deSBarry Smith   PetscErrorCode ierr;
1650354c94deSBarry Smith   Mat_MPIAIJ     *aij = (Mat_MPIAIJ *)mat->data;
1651354c94deSBarry Smith 
1652354c94deSBarry Smith   PetscFunctionBegin;
1653354c94deSBarry Smith   ierr = MatConjugate_SeqAIJ(aij->A);CHKERRQ(ierr);
1654354c94deSBarry Smith   ierr = MatConjugate_SeqAIJ(aij->B);CHKERRQ(ierr);
1655354c94deSBarry Smith #else
1656354c94deSBarry Smith   PetscFunctionBegin;
1657354c94deSBarry Smith #endif
1658354c94deSBarry Smith   PetscFunctionReturn(0);
1659354c94deSBarry Smith }
1660354c94deSBarry Smith 
166199cafbc1SBarry Smith #undef __FUNCT__
166299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIAIJ"
166399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIAIJ(Mat A)
166499cafbc1SBarry Smith {
166599cafbc1SBarry Smith   Mat_MPIAIJ   *a = (Mat_MPIAIJ*)A->data;
166699cafbc1SBarry Smith   PetscErrorCode ierr;
166799cafbc1SBarry Smith 
166899cafbc1SBarry Smith   PetscFunctionBegin;
166999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
167099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
167199cafbc1SBarry Smith   PetscFunctionReturn(0);
167299cafbc1SBarry Smith }
167399cafbc1SBarry Smith 
167499cafbc1SBarry Smith #undef __FUNCT__
167599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIAIJ"
167699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
167799cafbc1SBarry Smith {
167899cafbc1SBarry Smith   Mat_MPIAIJ   *a = (Mat_MPIAIJ*)A->data;
167999cafbc1SBarry Smith   PetscErrorCode ierr;
168099cafbc1SBarry Smith 
168199cafbc1SBarry Smith   PetscFunctionBegin;
168299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
168399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
168499cafbc1SBarry Smith   PetscFunctionReturn(0);
168599cafbc1SBarry Smith }
168699cafbc1SBarry Smith 
1687103bf8bdSMatthew Knepley #ifdef PETSC_HAVE_PBGL
1688103bf8bdSMatthew Knepley #include <boost/parallel/mpi/bsp_process_group.hpp>
1689103bf8bdSMatthew Knepley typedef boost::parallel::mpi::bsp_process_group            process_group_type;
1690103bf8bdSMatthew Knepley 
1691103bf8bdSMatthew Knepley #include <boost/graph/distributed/adjacency_list.hpp>
1692103bf8bdSMatthew Knepley #include <boost/parallel/mpi/bsp_process_group.hpp>
1693103bf8bdSMatthew Knepley 
1694103bf8bdSMatthew Knepley #include <boost/graph/distributed/petsc/interface.hpp>
1695103bf8bdSMatthew Knepley #include <boost/graph/distributed/ilu_0.hpp>
1696103bf8bdSMatthew Knepley 
1697103bf8bdSMatthew Knepley namespace petsc = boost::distributed::petsc;
1698103bf8bdSMatthew Knepley using namespace std;
1699103bf8bdSMatthew Knepley typedef double                                             value_type;
1700103bf8bdSMatthew Knepley typedef boost::graph::distributed::ilu_elimination_state   elimination_state;
1701103bf8bdSMatthew Knepley typedef boost::adjacency_list<boost::listS,
1702103bf8bdSMatthew Knepley                        boost::distributedS<process_group_type, boost::vecS>,
1703103bf8bdSMatthew Knepley                        boost::bidirectionalS,
1704103bf8bdSMatthew Knepley                        // Vertex properties
1705103bf8bdSMatthew Knepley                        boost::no_property,
1706103bf8bdSMatthew Knepley                        // Edge properties
1707103bf8bdSMatthew Knepley                        boost::property<boost::edge_weight_t, value_type,
1708103bf8bdSMatthew Knepley                          boost::property<boost::edge_finished_t, elimination_state> > > graph_type;
1709103bf8bdSMatthew Knepley 
1710103bf8bdSMatthew Knepley typedef boost::graph_traits<graph_type>::vertex_descriptor        vertex_type;
1711103bf8bdSMatthew Knepley typedef boost::graph_traits<graph_type>::edge_descriptor          edge_type;
1712103bf8bdSMatthew Knepley typedef boost::property_map<graph_type, boost::edge_weight_t>::type      weight_map_type;
1713103bf8bdSMatthew Knepley 
1714103bf8bdSMatthew Knepley #undef __FUNCT__
1715103bf8bdSMatthew Knepley #define __FUNCT__ "MatILUFactorSymbolic_MPIAIJ"
1716103bf8bdSMatthew Knepley /*
1717103bf8bdSMatthew Knepley   This uses the parallel ILU factorization of Peter Gottschling <pgottsch@osl.iu.edu>
1718103bf8bdSMatthew Knepley */
1719103bf8bdSMatthew Knepley PetscErrorCode MatILUFactorSymbolic_MPIAIJ(Mat A, IS isrow, IS iscol, MatFactorInfo *info, Mat *fact)
1720103bf8bdSMatthew Knepley {
1721103bf8bdSMatthew Knepley   PetscTruth           row_identity, col_identity;
1722103bf8bdSMatthew Knepley   PetscObjectContainer c;
1723103bf8bdSMatthew Knepley   PetscInt             m, n, M, N;
1724103bf8bdSMatthew Knepley   PetscErrorCode       ierr;
1725103bf8bdSMatthew Knepley 
1726103bf8bdSMatthew Knepley   PetscFunctionBegin;
1727103bf8bdSMatthew Knepley   if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for parallel ilu");
1728103bf8bdSMatthew Knepley   ierr = ISIdentity(isrow, &row_identity);CHKERRQ(ierr);
1729103bf8bdSMatthew Knepley   ierr = ISIdentity(iscol, &col_identity);CHKERRQ(ierr);
1730103bf8bdSMatthew Knepley   if (!row_identity || !col_identity) {
1731103bf8bdSMatthew Knepley     SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for parallel ILU");
1732103bf8bdSMatthew Knepley   }
1733103bf8bdSMatthew Knepley 
1734103bf8bdSMatthew Knepley   process_group_type pg;
1735103bf8bdSMatthew Knepley   graph_type*        graph_p = new graph_type(petsc::num_global_vertices(A), pg, petsc::matrix_distribution(A, pg));
1736103bf8bdSMatthew Knepley   graph_type&        graph   = *graph_p;
1737103bf8bdSMatthew Knepley   petsc::read_matrix(A, graph, get(boost::edge_weight, graph));
1738103bf8bdSMatthew Knepley 
1739103bf8bdSMatthew Knepley   //write_graphviz("petsc_matrix_as_graph.dot", graph, default_writer(), matrix_graph_writer<graph_type>(graph));
1740103bf8bdSMatthew Knepley   boost::property_map<graph_type, boost::edge_finished_t>::type finished = get(boost::edge_finished, graph);
1741103bf8bdSMatthew Knepley   BGL_FORALL_EDGES(e, graph, graph_type)
1742103bf8bdSMatthew Knepley     put(finished, e, boost::graph::distributed::unseen);
1743103bf8bdSMatthew Knepley 
1744103bf8bdSMatthew Knepley   ilu_0(graph, get(boost::edge_weight, graph), get(boost::edge_finished, graph));
1745103bf8bdSMatthew Knepley 
1746103bf8bdSMatthew Knepley   /* put together the new matrix */
1747103bf8bdSMatthew Knepley   ierr = MatCreate(A->comm, fact);CHKERRQ(ierr);
1748103bf8bdSMatthew Knepley   ierr = MatGetLocalSize(A, &m, &n);CHKERRQ(ierr);
1749103bf8bdSMatthew Knepley   ierr = MatGetSize(A, &M, &N);CHKERRQ(ierr);
1750103bf8bdSMatthew Knepley   ierr = MatSetSizes(*fact, m, n, M, N);CHKERRQ(ierr);
1751103bf8bdSMatthew Knepley   ierr = MatSetType(*fact, A->type_name);CHKERRQ(ierr);
175210bd6422SMatthew Knepley   ierr = MatAssemblyBegin(*fact, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
175310bd6422SMatthew Knepley   ierr = MatAssemblyEnd(*fact, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1754103bf8bdSMatthew Knepley   (*fact)->factor = FACTOR_LU;
1755103bf8bdSMatthew Knepley 
1756103bf8bdSMatthew Knepley   ierr = PetscObjectContainerCreate(A->comm, &c);
1757103bf8bdSMatthew Knepley   ierr = PetscObjectContainerSetPointer(c, graph_p);
1758103bf8bdSMatthew Knepley   ierr = PetscObjectCompose((PetscObject) (*fact), "graph", (PetscObject) c);
1759103bf8bdSMatthew Knepley   PetscFunctionReturn(0);
1760103bf8bdSMatthew Knepley }
1761103bf8bdSMatthew Knepley 
1762103bf8bdSMatthew Knepley #undef __FUNCT__
1763103bf8bdSMatthew Knepley #define __FUNCT__ "MatLUFactorNumeric_MPIAIJ"
1764103bf8bdSMatthew Knepley PetscErrorCode MatLUFactorNumeric_MPIAIJ(Mat A, MatFactorInfo *info, Mat *B)
1765103bf8bdSMatthew Knepley {
1766103bf8bdSMatthew Knepley   PetscFunctionBegin;
1767103bf8bdSMatthew Knepley   PetscFunctionReturn(0);
1768103bf8bdSMatthew Knepley }
1769103bf8bdSMatthew Knepley 
1770103bf8bdSMatthew Knepley #undef __FUNCT__
1771103bf8bdSMatthew Knepley #define __FUNCT__ "MatSolve_MPIAIJ"
1772103bf8bdSMatthew Knepley /*
1773103bf8bdSMatthew Knepley   This uses the parallel ILU factorization of Peter Gottschling <pgottsch@osl.iu.edu>
1774103bf8bdSMatthew Knepley */
1775103bf8bdSMatthew Knepley PetscErrorCode MatSolve_MPIAIJ(Mat A, Vec b, Vec x)
1776103bf8bdSMatthew Knepley {
1777103bf8bdSMatthew Knepley   graph_type*          graph_p;
1778103bf8bdSMatthew Knepley   PetscObjectContainer c;
1779103bf8bdSMatthew Knepley   PetscErrorCode       ierr;
1780103bf8bdSMatthew Knepley 
1781103bf8bdSMatthew Knepley   PetscFunctionBegin;
1782103bf8bdSMatthew Knepley   ierr = PetscObjectQuery((PetscObject) A, "graph", (PetscObject *) &c);CHKERRQ(ierr);
1783103bf8bdSMatthew Knepley   ierr = PetscObjectContainerGetPointer(c, (void **) &graph_p);CHKERRQ(ierr);
1784103bf8bdSMatthew Knepley   ierr = VecCopy(b, x); CHKERRQ(ierr);
1785103bf8bdSMatthew Knepley   PetscFunctionReturn(0);
1786103bf8bdSMatthew Knepley }
1787103bf8bdSMatthew Knepley #endif
1788103bf8bdSMatthew Knepley 
17898a729477SBarry Smith /* -------------------------------------------------------------------*/
1790cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
1791cda55fadSBarry Smith        MatGetRow_MPIAIJ,
1792cda55fadSBarry Smith        MatRestoreRow_MPIAIJ,
1793cda55fadSBarry Smith        MatMult_MPIAIJ,
179497304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ,
17957c922b88SBarry Smith        MatMultTranspose_MPIAIJ,
17967c922b88SBarry Smith        MatMultTransposeAdd_MPIAIJ,
1797103bf8bdSMatthew Knepley #ifdef PETSC_HAVE_PBGL
1798103bf8bdSMatthew Knepley        MatSolve_MPIAIJ,
1799103bf8bdSMatthew Knepley #else
1800cda55fadSBarry Smith        0,
1801103bf8bdSMatthew Knepley #endif
1802cda55fadSBarry Smith        0,
1803cda55fadSBarry Smith        0,
180497304618SKris Buschelman /*10*/ 0,
1805cda55fadSBarry Smith        0,
1806cda55fadSBarry Smith        0,
180744a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1808b7c46309SBarry Smith        MatTranspose_MPIAIJ,
180997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ,
1810cda55fadSBarry Smith        MatEqual_MPIAIJ,
1811cda55fadSBarry Smith        MatGetDiagonal_MPIAIJ,
1812cda55fadSBarry Smith        MatDiagonalScale_MPIAIJ,
1813cda55fadSBarry Smith        MatNorm_MPIAIJ,
181497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ,
1815cda55fadSBarry Smith        MatAssemblyEnd_MPIAIJ,
18161eb62cbbSBarry Smith        0,
1817cda55fadSBarry Smith        MatSetOption_MPIAIJ,
1818cda55fadSBarry Smith        MatZeroEntries_MPIAIJ,
181997304618SKris Buschelman /*25*/ MatZeroRows_MPIAIJ,
1820cda55fadSBarry Smith        0,
1821103bf8bdSMatthew Knepley #ifdef PETSC_HAVE_PBGL
1822103bf8bdSMatthew Knepley        MatLUFactorNumeric_MPIAIJ,
1823103bf8bdSMatthew Knepley #else
1824cda55fadSBarry Smith        0,
1825103bf8bdSMatthew Knepley #endif
1826cda55fadSBarry Smith        0,
1827cda55fadSBarry Smith        0,
182897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIAIJ,
1829103bf8bdSMatthew Knepley #ifdef PETSC_HAVE_PBGL
1830103bf8bdSMatthew Knepley        MatILUFactorSymbolic_MPIAIJ,
1831103bf8bdSMatthew Knepley #else
1832cda55fadSBarry Smith        0,
1833103bf8bdSMatthew Knepley #endif
1834cda55fadSBarry Smith        0,
1835cda55fadSBarry Smith        0,
1836cda55fadSBarry Smith        0,
183797304618SKris Buschelman /*35*/ MatDuplicate_MPIAIJ,
1838cda55fadSBarry Smith        0,
1839cda55fadSBarry Smith        0,
1840cda55fadSBarry Smith        0,
1841cda55fadSBarry Smith        0,
184297304618SKris Buschelman /*40*/ MatAXPY_MPIAIJ,
1843cda55fadSBarry Smith        MatGetSubMatrices_MPIAIJ,
1844cda55fadSBarry Smith        MatIncreaseOverlap_MPIAIJ,
1845cda55fadSBarry Smith        MatGetValues_MPIAIJ,
1846cb5b572fSBarry Smith        MatCopy_MPIAIJ,
18478c07d4e3SBarry Smith /*45*/ 0,
1848cda55fadSBarry Smith        MatScale_MPIAIJ,
1849cda55fadSBarry Smith        0,
1850cda55fadSBarry Smith        0,
1851cda55fadSBarry Smith        0,
1852521d7252SBarry Smith /*50*/ MatSetBlockSize_MPIAIJ,
1853cda55fadSBarry Smith        0,
1854cda55fadSBarry Smith        0,
1855cda55fadSBarry Smith        0,
1856cda55fadSBarry Smith        0,
185797304618SKris Buschelman /*55*/ MatFDColoringCreate_MPIAIJ,
1858cda55fadSBarry Smith        0,
1859cda55fadSBarry Smith        MatSetUnfactored_MPIAIJ,
186042e855d1Svictor        MatPermute_MPIAIJ,
1861cda55fadSBarry Smith        0,
186297304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIAIJ,
1863e03a110bSBarry Smith        MatDestroy_MPIAIJ,
1864e03a110bSBarry Smith        MatView_MPIAIJ,
1865357abbc8SBarry Smith        0,
1866a2243be0SBarry Smith        0,
186797304618SKris Buschelman /*65*/ 0,
1868a2243be0SBarry Smith        0,
1869a2243be0SBarry Smith        0,
1870a2243be0SBarry Smith        0,
1871a2243be0SBarry Smith        0,
187297304618SKris Buschelman /*70*/ 0,
1873a2243be0SBarry Smith        0,
1874a2243be0SBarry Smith        MatSetColoring_MPIAIJ,
1875dcf5cc72SBarry Smith #if defined(PETSC_HAVE_ADIC)
1876779c1a83SBarry Smith        MatSetValuesAdic_MPIAIJ,
1877dcf5cc72SBarry Smith #else
1878dcf5cc72SBarry Smith        0,
1879dcf5cc72SBarry Smith #endif
188097304618SKris Buschelman        MatSetValuesAdifor_MPIAIJ,
188197304618SKris Buschelman /*75*/ 0,
188297304618SKris Buschelman        0,
188397304618SKris Buschelman        0,
188497304618SKris Buschelman        0,
188597304618SKris Buschelman        0,
188697304618SKris Buschelman /*80*/ 0,
188797304618SKris Buschelman        0,
188897304618SKris Buschelman        0,
188997304618SKris Buschelman        0,
189041acf15aSKris Buschelman /*84*/ MatLoad_MPIAIJ,
18916284ec50SHong Zhang        0,
18926284ec50SHong Zhang        0,
18936284ec50SHong Zhang        0,
18946284ec50SHong Zhang        0,
1895865e5f61SKris Buschelman        0,
1896865e5f61SKris Buschelman /*90*/ MatMatMult_MPIAIJ_MPIAIJ,
189726be0446SHong Zhang        MatMatMultSymbolic_MPIAIJ_MPIAIJ,
189826be0446SHong Zhang        MatMatMultNumeric_MPIAIJ_MPIAIJ,
18997a7894deSKris Buschelman        MatPtAP_Basic,
19007a7894deSKris Buschelman        MatPtAPSymbolic_MPIAIJ,
19017a7894deSKris Buschelman /*95*/ MatPtAPNumeric_MPIAIJ,
19027a7894deSKris Buschelman        0,
19037a7894deSKris Buschelman        0,
19047a7894deSKris Buschelman        0,
19057a7894deSKris Buschelman        0,
19067a7894deSKris Buschelman /*100*/0,
1907865e5f61SKris Buschelman        MatPtAPSymbolic_MPIAIJ_MPIAIJ,
19087a7894deSKris Buschelman        MatPtAPNumeric_MPIAIJ_MPIAIJ,
19092fd7e33dSBarry Smith        MatConjugate_MPIAIJ,
19102fd7e33dSBarry Smith        0,
191199cafbc1SBarry Smith /*105*/MatSetValuesRow_MPIAIJ,
191299cafbc1SBarry Smith        MatRealPart_MPIAIJ,
191399cafbc1SBarry Smith        MatImaginaryPart_MPIAIJ};
191436ce4990SBarry Smith 
19152e8a6d31SBarry Smith /* ----------------------------------------------------------------------------------------*/
19162e8a6d31SBarry Smith 
1917fb2e594dSBarry Smith EXTERN_C_BEGIN
19184a2ae208SSatish Balay #undef __FUNCT__
19194a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIAIJ"
1920be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIAIJ(Mat mat)
19212e8a6d31SBarry Smith {
19222e8a6d31SBarry Smith   Mat_MPIAIJ     *aij = (Mat_MPIAIJ *)mat->data;
1923dfbe8321SBarry Smith   PetscErrorCode ierr;
19242e8a6d31SBarry Smith 
19252e8a6d31SBarry Smith   PetscFunctionBegin;
19262e8a6d31SBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19272e8a6d31SBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
19282e8a6d31SBarry Smith   PetscFunctionReturn(0);
19292e8a6d31SBarry Smith }
1930fb2e594dSBarry Smith EXTERN_C_END
19312e8a6d31SBarry Smith 
1932fb2e594dSBarry Smith EXTERN_C_BEGIN
19334a2ae208SSatish Balay #undef __FUNCT__
19344a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIAIJ"
1935be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIAIJ(Mat mat)
19362e8a6d31SBarry Smith {
19372e8a6d31SBarry Smith   Mat_MPIAIJ     *aij = (Mat_MPIAIJ *)mat->data;
1938dfbe8321SBarry Smith   PetscErrorCode ierr;
19392e8a6d31SBarry Smith 
19402e8a6d31SBarry Smith   PetscFunctionBegin;
19412e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
19422e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
19432e8a6d31SBarry Smith   PetscFunctionReturn(0);
19442e8a6d31SBarry Smith }
1945fb2e594dSBarry Smith EXTERN_C_END
19468a729477SBarry Smith 
1947e090d566SSatish Balay #include "petscpc.h"
194827508adbSBarry Smith EXTERN_C_BEGIN
19494a2ae208SSatish Balay #undef __FUNCT__
1950a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIAIJSetPreallocation_MPIAIJ"
1951be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocation_MPIAIJ(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1952a23d5eceSKris Buschelman {
1953a23d5eceSKris Buschelman   Mat_MPIAIJ     *b;
1954dfbe8321SBarry Smith   PetscErrorCode ierr;
1955b1d57f15SBarry Smith   PetscInt       i;
1956a23d5eceSKris Buschelman 
1957a23d5eceSKris Buschelman   PetscFunctionBegin;
1958a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1959a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
1960a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
196177431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
196277431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1963899cda47SBarry Smith 
1964899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = 1;
1965899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1966899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1967a23d5eceSKris Buschelman   if (d_nnz) {
1968899cda47SBarry Smith     for (i=0; i<B->rmap.n; i++) {
196977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]);
1970a23d5eceSKris Buschelman     }
1971a23d5eceSKris Buschelman   }
1972a23d5eceSKris Buschelman   if (o_nnz) {
1973899cda47SBarry Smith     for (i=0; i<B->rmap.n; i++) {
197477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]);
1975a23d5eceSKris Buschelman     }
1976a23d5eceSKris Buschelman   }
1977a23d5eceSKris Buschelman   b = (Mat_MPIAIJ*)B->data;
1978899cda47SBarry Smith 
1979899cda47SBarry Smith   /* Explicitly create 2 MATSEQAIJ matrices. */
1980899cda47SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1981899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
1982899cda47SBarry Smith   ierr = MatSetType(b->A,MATSEQAIJ);CHKERRQ(ierr);
1983899cda47SBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1984899cda47SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1985899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
1986899cda47SBarry Smith   ierr = MatSetType(b->B,MATSEQAIJ);CHKERRQ(ierr);
1987899cda47SBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1988899cda47SBarry Smith 
1989c60e587dSKris Buschelman   ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr);
1990c60e587dSKris Buschelman   ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr);
1991a23d5eceSKris Buschelman 
1992a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1993a23d5eceSKris Buschelman }
1994a23d5eceSKris Buschelman EXTERN_C_END
1995a23d5eceSKris Buschelman 
19964a2ae208SSatish Balay #undef __FUNCT__
19974a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIAIJ"
1998dfbe8321SBarry Smith PetscErrorCode MatDuplicate_MPIAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1999d6dfbf8fSBarry Smith {
2000d6dfbf8fSBarry Smith   Mat            mat;
2001416022c9SBarry Smith   Mat_MPIAIJ     *a,*oldmat = (Mat_MPIAIJ*)matin->data;
2002dfbe8321SBarry Smith   PetscErrorCode ierr;
2003d6dfbf8fSBarry Smith 
20043a40ed3dSBarry Smith   PetscFunctionBegin;
2005416022c9SBarry Smith   *newmat       = 0;
2006f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2007899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2008be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20091d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2010273d9f13SBarry Smith   a    = (Mat_MPIAIJ*)mat->data;
2011e1b6402fSHong Zhang 
2012d6dfbf8fSBarry Smith   mat->factor       = matin->factor;
2013899cda47SBarry Smith   mat->rmap.bs      = matin->rmap.bs;
2014c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
2015e7641de0SSatish Balay   mat->insertmode   = NOT_SET_VALUES;
2016273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
2017d6dfbf8fSBarry Smith 
201817699dbbSLois Curfman McInnes   a->size           = oldmat->size;
201917699dbbSLois Curfman McInnes   a->rank           = oldmat->rank;
2020e7641de0SSatish Balay   a->donotstash     = oldmat->donotstash;
2021e7641de0SSatish Balay   a->roworiented    = oldmat->roworiented;
2022e7641de0SSatish Balay   a->rowindices     = 0;
2023bcd2baecSBarry Smith   a->rowvalues      = 0;
2024bcd2baecSBarry Smith   a->getrowactive   = PETSC_FALSE;
2025d6dfbf8fSBarry Smith 
2026899cda47SBarry Smith   ierr = PetscMapCopy(mat->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2027899cda47SBarry Smith   ierr = PetscMapCopy(mat->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2028899cda47SBarry Smith 
20298798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
20302ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
2031aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
20320f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2033b1fc9764SSatish Balay #else
2034899cda47SBarry Smith     ierr = PetscMalloc((mat->cmap.N)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
2035899cda47SBarry Smith     ierr = PetscLogObjectMemory(mat,(mat->cmap.N)*sizeof(PetscInt));CHKERRQ(ierr);
2036899cda47SBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(mat->cmap.N)*sizeof(PetscInt));CHKERRQ(ierr);
2037b1fc9764SSatish Balay #endif
2038416022c9SBarry Smith   } else a->colmap = 0;
20393f41c07dSBarry Smith   if (oldmat->garray) {
2040b1d57f15SBarry Smith     PetscInt len;
2041899cda47SBarry Smith     len  = oldmat->B->cmap.n;
2042b1d57f15SBarry Smith     ierr = PetscMalloc((len+1)*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
204352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2044b1d57f15SBarry Smith     if (len) { ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); }
2045416022c9SBarry Smith   } else a->garray = 0;
2046d6dfbf8fSBarry Smith 
2047416022c9SBarry Smith   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
204852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2049a56f8943SBarry Smith   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
205052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
20512e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
205252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
20532e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
205452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2055b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
20568a729477SBarry Smith   *newmat = mat;
20573a40ed3dSBarry Smith   PetscFunctionReturn(0);
20588a729477SBarry Smith }
2059416022c9SBarry Smith 
2060e090d566SSatish Balay #include "petscsys.h"
2061416022c9SBarry Smith 
20624a2ae208SSatish Balay #undef __FUNCT__
20634a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIAIJ"
2064f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2065416022c9SBarry Smith {
2066d65a2f8fSBarry Smith   Mat            A;
206787828ca2SBarry Smith   PetscScalar    *vals,*svals;
206819bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2069416022c9SBarry Smith   MPI_Status     status;
20706849ba73SBarry Smith   PetscErrorCode ierr;
2071dc231df0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,maxnz;
2072167e7480SBarry Smith   PetscInt       i,nz,j,rstart,rend,mmax;
2073b1d57f15SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
2074910ba992SMatthew Knepley   PetscInt       *ourlens = PETSC_NULL,*procsnz = PETSC_NULL,*offlens = PETSC_NULL,jj,*mycols,*smycols;
2075dc231df0SBarry Smith   PetscInt       cend,cstart,n,*rowners;
2076b1d57f15SBarry Smith   int            fd;
2077416022c9SBarry Smith 
20783a40ed3dSBarry Smith   PetscFunctionBegin;
20791dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
20801dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
208117699dbbSLois Curfman McInnes   if (!rank) {
2082b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
20830752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2084552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
20856c5fab8fSBarry Smith   }
20866c5fab8fSBarry Smith 
2087b1d57f15SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2088416022c9SBarry Smith   M = header[1]; N = header[2];
2089416022c9SBarry Smith   /* determine ownership of all rows */
209029cdbbc8SSatish Balay   m    = M/size + ((M % size) > rank);
2091dc231df0SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
2092dc231df0SBarry Smith   ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2093167e7480SBarry Smith 
2094167e7480SBarry Smith   /* First process needs enough room for process with most rows */
2095167e7480SBarry Smith   if (!rank) {
2096167e7480SBarry Smith     mmax       = rowners[1];
2097167e7480SBarry Smith     for (i=2; i<size; i++) {
2098167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2099167e7480SBarry Smith     }
2100167e7480SBarry Smith   } else mmax = m;
2101167e7480SBarry Smith 
2102416022c9SBarry Smith   rowners[0] = 0;
210317699dbbSLois Curfman McInnes   for (i=2; i<=size; i++) {
2104167e7480SBarry Smith     mmax       = PetscMax(mmax,rowners[i]);
2105416022c9SBarry Smith     rowners[i] += rowners[i-1];
2106416022c9SBarry Smith   }
210717699dbbSLois Curfman McInnes   rstart = rowners[rank];
210817699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
2109416022c9SBarry Smith 
2110416022c9SBarry Smith   /* distribute row lengths to all processors */
2111167e7480SBarry Smith   ierr    = PetscMalloc2(mmax,PetscInt,&ourlens,mmax,PetscInt,&offlens);CHKERRQ(ierr);
211217699dbbSLois Curfman McInnes   if (!rank) {
2113dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,ourlens,m,PETSC_INT);CHKERRQ(ierr);
2114dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2115b1d57f15SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2116b1d57f15SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2117dc231df0SBarry Smith     for (j=0; j<m; j++) {
2118dc231df0SBarry Smith       procsnz[0] += ourlens[j];
2119dc231df0SBarry Smith     }
2120dc231df0SBarry Smith     for (i=1; i<size; i++) {
2121dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,rowners[i+1]-rowners[i],PETSC_INT);CHKERRQ(ierr);
2122dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2123dc231df0SBarry Smith       for (j=0; j<rowners[i+1]-rowners[i]; j++) {
2124416022c9SBarry Smith         procsnz[i] += rowlengths[j];
2125416022c9SBarry Smith       }
2126dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,rowners[i+1]-rowners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2127416022c9SBarry Smith     }
2128606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2129dc231df0SBarry Smith   } else {
2130dc231df0SBarry Smith     ierr = MPI_Recv(ourlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2131dc231df0SBarry Smith   }
2132416022c9SBarry Smith 
2133dc231df0SBarry Smith   if (!rank) {
2134416022c9SBarry Smith     /* determine max buffer needed and allocate it */
2135416022c9SBarry Smith     maxnz = 0;
21368a8e0b3aSBarry Smith     for (i=0; i<size; i++) {
21370452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
2138416022c9SBarry Smith     }
2139b1d57f15SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2140416022c9SBarry Smith 
2141416022c9SBarry Smith     /* read in my part of the matrix column indices  */
2142416022c9SBarry Smith     nz   = procsnz[0];
2143b1d57f15SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
21440752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2145d65a2f8fSBarry Smith 
2146d65a2f8fSBarry Smith     /* read in every one elses and ship off */
214717699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
2148d65a2f8fSBarry Smith       nz   = procsnz[i];
21490752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2150b1d57f15SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2151d65a2f8fSBarry Smith     }
2152606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21533a40ed3dSBarry Smith   } else {
2154416022c9SBarry Smith     /* determine buffer space needed for message */
2155416022c9SBarry Smith     nz = 0;
2156416022c9SBarry Smith     for (i=0; i<m; i++) {
2157416022c9SBarry Smith       nz += ourlens[i];
2158416022c9SBarry Smith     }
2159dc231df0SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
2160416022c9SBarry Smith 
2161416022c9SBarry Smith     /* receive message of column indices*/
2162b1d57f15SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2163b1d57f15SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
216429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2165416022c9SBarry Smith   }
2166416022c9SBarry Smith 
2167b362ba68SBarry Smith   /* determine column ownership if matrix is not square */
2168b362ba68SBarry Smith   if (N != M) {
2169b362ba68SBarry Smith     n      = N/size + ((N % size) > rank);
2170b1d57f15SBarry Smith     ierr   = MPI_Scan(&n,&cend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
2171b362ba68SBarry Smith     cstart = cend - n;
2172b362ba68SBarry Smith   } else {
2173b362ba68SBarry Smith     cstart = rstart;
2174b362ba68SBarry Smith     cend   = rend;
2175fb2e594dSBarry Smith     n      = cend - cstart;
2176b362ba68SBarry Smith   }
2177b362ba68SBarry Smith 
2178416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
2179b1d57f15SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
2180416022c9SBarry Smith   jj = 0;
2181416022c9SBarry Smith   for (i=0; i<m; i++) {
2182416022c9SBarry Smith     for (j=0; j<ourlens[i]; j++) {
2183b362ba68SBarry Smith       if (mycols[jj] < cstart || mycols[jj] >= cend) offlens[i]++;
2184416022c9SBarry Smith       jj++;
2185416022c9SBarry Smith     }
2186416022c9SBarry Smith   }
2187d65a2f8fSBarry Smith 
2188d65a2f8fSBarry Smith   /* create our matrix */
2189416022c9SBarry Smith   for (i=0; i<m; i++) {
2190416022c9SBarry Smith     ourlens[i] -= offlens[i];
2191416022c9SBarry Smith   }
2192f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2193f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,n,M,N);CHKERRQ(ierr);
2194d10c748bSKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
2195d10c748bSKris Buschelman   ierr = MatMPIAIJSetPreallocation(A,0,ourlens,0,offlens);CHKERRQ(ierr);
2196d10c748bSKris Buschelman 
2197fb2e594dSBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2198d65a2f8fSBarry Smith   for (i=0; i<m; i++) {
2199d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
2200d65a2f8fSBarry Smith   }
2201416022c9SBarry Smith 
220217699dbbSLois Curfman McInnes   if (!rank) {
2203906b51c7SHong Zhang     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
2204416022c9SBarry Smith 
2205416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
2206416022c9SBarry Smith     nz   = procsnz[0];
22070752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2208d65a2f8fSBarry Smith 
2209d65a2f8fSBarry Smith     /* insert into matrix */
2210d65a2f8fSBarry Smith     jj      = rstart;
2211d65a2f8fSBarry Smith     smycols = mycols;
2212d65a2f8fSBarry Smith     svals   = vals;
2213d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
2214dc231df0SBarry Smith       ierr = MatSetValues_MPIAIJ(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
2215d65a2f8fSBarry Smith       smycols += ourlens[i];
2216d65a2f8fSBarry Smith       svals   += ourlens[i];
2217d65a2f8fSBarry Smith       jj++;
2218416022c9SBarry Smith     }
2219416022c9SBarry Smith 
2220d65a2f8fSBarry Smith     /* read in other processors and ship out */
222117699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
2222416022c9SBarry Smith       nz   = procsnz[i];
22230752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2224ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2225416022c9SBarry Smith     }
2226606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22273a40ed3dSBarry Smith   } else {
2228d65a2f8fSBarry Smith     /* receive numeric values */
222987828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
2230416022c9SBarry Smith 
2231d65a2f8fSBarry Smith     /* receive message of values*/
2232ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2233ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
223429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2235d65a2f8fSBarry Smith 
2236d65a2f8fSBarry Smith     /* insert into matrix */
2237d65a2f8fSBarry Smith     jj      = rstart;
2238d65a2f8fSBarry Smith     smycols = mycols;
2239d65a2f8fSBarry Smith     svals   = vals;
2240d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
2241dc231df0SBarry Smith       ierr     = MatSetValues_MPIAIJ(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
2242d65a2f8fSBarry Smith       smycols += ourlens[i];
2243d65a2f8fSBarry Smith       svals   += ourlens[i];
2244d65a2f8fSBarry Smith       jj++;
2245d65a2f8fSBarry Smith     }
2246d65a2f8fSBarry Smith   }
2247dc231df0SBarry Smith   ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr);
2248606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
2249606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
2250606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2251d65a2f8fSBarry Smith 
22526d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22536d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2254d10c748bSKris Buschelman   *newmat = A;
22553a40ed3dSBarry Smith   PetscFunctionReturn(0);
2256416022c9SBarry Smith }
2257a0ff6018SBarry Smith 
22584a2ae208SSatish Balay #undef __FUNCT__
22594a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIAIJ"
2260a0ff6018SBarry Smith /*
226129da9460SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqAIJ
226229da9460SBarry Smith   in local and then by concatenating the local matrices the end result.
226329da9460SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIAIJ()
2264a0ff6018SBarry Smith */
2265b1d57f15SBarry Smith PetscErrorCode MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
2266a0ff6018SBarry Smith {
2267dfbe8321SBarry Smith   PetscErrorCode ierr;
226832dcc486SBarry Smith   PetscMPIInt    rank,size;
2269b1d57f15SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j;
2270b1d57f15SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
2271fee21e36SBarry Smith   Mat            *local,M,Mreuse;
227287828ca2SBarry Smith   PetscScalar    *vwork,*aa;
227300e6dbe6SBarry Smith   MPI_Comm       comm = mat->comm;
227400e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
22757e2c5f70SBarry Smith 
2276a0ff6018SBarry Smith 
2277a0ff6018SBarry Smith   PetscFunctionBegin;
22781dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
22791dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
228000e6dbe6SBarry Smith 
2281fee21e36SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
2282fee21e36SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
2283e005ede5SBarry Smith     if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2284fee21e36SBarry Smith     local = &Mreuse;
2285fee21e36SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
2286fee21e36SBarry Smith   } else {
2287a0ff6018SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
2288fee21e36SBarry Smith     Mreuse = *local;
2289606d414cSSatish Balay     ierr   = PetscFree(local);CHKERRQ(ierr);
2290fee21e36SBarry Smith   }
2291a0ff6018SBarry Smith 
2292a0ff6018SBarry Smith   /*
2293a0ff6018SBarry Smith       m - number of local rows
2294a0ff6018SBarry Smith       n - number of columns (same on all processors)
2295a0ff6018SBarry Smith       rstart - first row in new global matrix generated
2296a0ff6018SBarry Smith   */
2297fee21e36SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
2298a0ff6018SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
2299fee21e36SBarry Smith     aij = (Mat_SeqAIJ*)(Mreuse)->data;
230000e6dbe6SBarry Smith     ii  = aij->i;
230100e6dbe6SBarry Smith     jj  = aij->j;
230200e6dbe6SBarry Smith 
2303a0ff6018SBarry Smith     /*
230400e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
230500e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
2306a0ff6018SBarry Smith     */
230700e6dbe6SBarry Smith 
230800e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
23096a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
2310ab50ec6bSBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
2311ab50ec6bSBarry Smith       if (mglobal == n) { /* square matrix */
2312e2c4fddaSBarry Smith 	nlocal = m;
23136a6a5d1dSBarry Smith       } else {
2314ab50ec6bSBarry Smith         nlocal = n/size + ((n % size) > rank);
2315ab50ec6bSBarry Smith       }
2316ab50ec6bSBarry Smith     } else {
23176a6a5d1dSBarry Smith       nlocal = csize;
23186a6a5d1dSBarry Smith     }
2319b1d57f15SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
232000e6dbe6SBarry Smith     rstart = rend - nlocal;
23216a6a5d1dSBarry Smith     if (rank == size - 1 && rend != n) {
232277431f27SBarry Smith       SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
23236a6a5d1dSBarry Smith     }
232400e6dbe6SBarry Smith 
232500e6dbe6SBarry Smith     /* next, compute all the lengths */
2326b1d57f15SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
232700e6dbe6SBarry Smith     olens = dlens + m;
232800e6dbe6SBarry Smith     for (i=0; i<m; i++) {
232900e6dbe6SBarry Smith       jend = ii[i+1] - ii[i];
233000e6dbe6SBarry Smith       olen = 0;
233100e6dbe6SBarry Smith       dlen = 0;
233200e6dbe6SBarry Smith       for (j=0; j<jend; j++) {
233300e6dbe6SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
233400e6dbe6SBarry Smith         else dlen++;
233500e6dbe6SBarry Smith         jj++;
233600e6dbe6SBarry Smith       }
233700e6dbe6SBarry Smith       olens[i] = olen;
233800e6dbe6SBarry Smith       dlens[i] = dlen;
233900e6dbe6SBarry Smith     }
2340f69a0ea3SMatthew Knepley     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
2341f69a0ea3SMatthew Knepley     ierr = MatSetSizes(M,m,nlocal,PETSC_DECIDE,n);CHKERRQ(ierr);
2342e2d9671bSKris Buschelman     ierr = MatSetType(M,mat->type_name);CHKERRQ(ierr);
2343e2d9671bSKris Buschelman     ierr = MatMPIAIJSetPreallocation(M,0,dlens,0,olens);CHKERRQ(ierr);
2344606d414cSSatish Balay     ierr = PetscFree(dlens);CHKERRQ(ierr);
2345a0ff6018SBarry Smith   } else {
2346b1d57f15SBarry Smith     PetscInt ml,nl;
2347a0ff6018SBarry Smith 
2348a0ff6018SBarry Smith     M = *newmat;
2349a0ff6018SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
235029bbc08cSBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
2351a0ff6018SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
2352c48de900SBarry Smith     /*
2353c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
2354c48de900SBarry Smith        rather than the slower MatSetValues().
2355c48de900SBarry Smith     */
2356c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
2357c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
2358a0ff6018SBarry Smith   }
2359a0ff6018SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
2360fee21e36SBarry Smith   aij = (Mat_SeqAIJ*)(Mreuse)->data;
236100e6dbe6SBarry Smith   ii  = aij->i;
236200e6dbe6SBarry Smith   jj  = aij->j;
236300e6dbe6SBarry Smith   aa  = aij->a;
2364a0ff6018SBarry Smith   for (i=0; i<m; i++) {
2365a0ff6018SBarry Smith     row   = rstart + i;
236600e6dbe6SBarry Smith     nz    = ii[i+1] - ii[i];
236700e6dbe6SBarry Smith     cwork = jj;     jj += nz;
236800e6dbe6SBarry Smith     vwork = aa;     aa += nz;
23698c638d02SBarry Smith     ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
2370a0ff6018SBarry Smith   }
2371a0ff6018SBarry Smith 
2372a0ff6018SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2373a0ff6018SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2374a0ff6018SBarry Smith   *newmat = M;
2375fee21e36SBarry Smith 
2376fee21e36SBarry Smith   /* save submatrix used in processor for next request */
2377fee21e36SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
2378fee21e36SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
2379fee21e36SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
2380fee21e36SBarry Smith   }
2381fee21e36SBarry Smith 
2382a0ff6018SBarry Smith   PetscFunctionReturn(0);
2383a0ff6018SBarry Smith }
2384273d9f13SBarry Smith 
2385e2e86b8fSSatish Balay EXTERN_C_BEGIN
23864a2ae208SSatish Balay #undef __FUNCT__
2387ccd8e176SBarry Smith #define __FUNCT__ "MatMPIAIJSetPreallocationCSR_MPIAIJ"
2388b7940d39SSatish Balay PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[])
2389ccd8e176SBarry Smith {
2390899cda47SBarry Smith   PetscInt       m,cstart, cend,j,nnz,i,d;
2391899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart,ii;
2392ccd8e176SBarry Smith   const PetscInt *JJ;
2393ccd8e176SBarry Smith   PetscScalar    *values;
2394ccd8e176SBarry Smith   PetscErrorCode ierr;
2395ccd8e176SBarry Smith 
2396ccd8e176SBarry Smith   PetscFunctionBegin;
2397b7940d39SSatish Balay   if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Ii[0] must be 0 it is %D",Ii[0]);
2398899cda47SBarry Smith 
2399899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = 1;
2400899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
2401899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
2402899cda47SBarry Smith   m      = B->rmap.n;
2403899cda47SBarry Smith   cstart = B->cmap.rstart;
2404899cda47SBarry Smith   cend   = B->cmap.rend;
2405899cda47SBarry Smith   rstart = B->rmap.rstart;
2406899cda47SBarry Smith 
2407ccd8e176SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2408ccd8e176SBarry Smith   o_nnz = d_nnz + m;
2409ccd8e176SBarry Smith 
2410ccd8e176SBarry Smith   for (i=0; i<m; i++) {
2411b7940d39SSatish Balay     nnz     = Ii[i+1]- Ii[i];
2412b7940d39SSatish Balay     JJ      = J + Ii[i];
2413ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2414a1661176SMatthew Knepley     if (nnz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative %D number of columns",i,nnz);
2415ccd8e176SBarry Smith     for (j=0; j<nnz; j++) {
2416ccd8e176SBarry Smith       if (*JJ >= cstart) break;
2417ccd8e176SBarry Smith       JJ++;
2418ccd8e176SBarry Smith     }
2419ccd8e176SBarry Smith     d = 0;
2420ccd8e176SBarry Smith     for (; j<nnz; j++) {
2421ccd8e176SBarry Smith       if (*JJ++ >= cend) break;
2422ccd8e176SBarry Smith       d++;
2423ccd8e176SBarry Smith     }
2424ccd8e176SBarry Smith     d_nnz[i] = d;
2425ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
2426ccd8e176SBarry Smith   }
2427ccd8e176SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2428ccd8e176SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2429ccd8e176SBarry Smith 
2430ccd8e176SBarry Smith   if (v) values = (PetscScalar*)v;
2431ccd8e176SBarry Smith   else {
2432ccd8e176SBarry Smith     ierr = PetscMalloc((nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2433ccd8e176SBarry Smith     ierr = PetscMemzero(values,nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2434ccd8e176SBarry Smith   }
2435ccd8e176SBarry Smith 
2436ccd8e176SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2437ccd8e176SBarry Smith   for (i=0; i<m; i++) {
2438ccd8e176SBarry Smith     ii   = i + rstart;
2439b7940d39SSatish Balay     nnz  = Ii[i+1]- Ii[i];
2440b7940d39SSatish Balay     ierr = MatSetValues_MPIAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2441ccd8e176SBarry Smith   }
2442ccd8e176SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2443ccd8e176SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2444ccd8e176SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2445ccd8e176SBarry Smith 
2446ccd8e176SBarry Smith   if (!v) {
2447ccd8e176SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2448ccd8e176SBarry Smith   }
2449ccd8e176SBarry Smith   PetscFunctionReturn(0);
2450ccd8e176SBarry Smith }
2451e2e86b8fSSatish Balay EXTERN_C_END
2452ccd8e176SBarry Smith 
2453ccd8e176SBarry Smith #undef __FUNCT__
2454ccd8e176SBarry Smith #define __FUNCT__ "MatMPIAIJSetPreallocationCSR"
24551eea217eSSatish Balay /*@
2456ccd8e176SBarry Smith    MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2457ccd8e176SBarry Smith    (the default parallel PETSc format).
2458ccd8e176SBarry Smith 
2459ccd8e176SBarry Smith    Collective on MPI_Comm
2460ccd8e176SBarry Smith 
2461ccd8e176SBarry Smith    Input Parameters:
2462a1661176SMatthew Knepley +  B - the matrix
2463ccd8e176SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2464ccd8e176SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2465ccd8e176SBarry Smith -  v - optional values in the matrix
2466ccd8e176SBarry Smith 
2467ccd8e176SBarry Smith    Level: developer
2468ccd8e176SBarry Smith 
24692fb0ec9aSBarry Smith    Notes: this actually copies the values from i[], j[], and a[] to put them into PETSc's internal
24702fb0ec9aSBarry Smith      storage format. Thus changing the values in a[] after this call will not effect the matrix values.
24712fb0ec9aSBarry Smith 
2472ccd8e176SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2473ccd8e176SBarry Smith 
24742fb0ec9aSBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ,
2475*8d7a6e47SBarry Smith           MatCreateSeqAIJWithArrays(), MatCreateMPIAIJWithSplitArrays()
2476ccd8e176SBarry Smith @*/
2477be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocationCSR(Mat B,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2478ccd8e176SBarry Smith {
2479ccd8e176SBarry Smith   PetscErrorCode ierr,(*f)(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]);
2480ccd8e176SBarry Smith 
2481ccd8e176SBarry Smith   PetscFunctionBegin;
2482ccd8e176SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2483ccd8e176SBarry Smith   if (f) {
2484ccd8e176SBarry Smith     ierr = (*f)(B,i,j,v);CHKERRQ(ierr);
2485ccd8e176SBarry Smith   }
2486ccd8e176SBarry Smith   PetscFunctionReturn(0);
2487ccd8e176SBarry Smith }
2488ccd8e176SBarry Smith 
2489ccd8e176SBarry Smith #undef __FUNCT__
24904a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJSetPreallocation"
2491273d9f13SBarry Smith /*@C
2492ccd8e176SBarry Smith    MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in AIJ format
2493273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
2494273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2495273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2496273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2497273d9f13SBarry Smith 
2498273d9f13SBarry Smith    Collective on MPI_Comm
2499273d9f13SBarry Smith 
2500273d9f13SBarry Smith    Input Parameters:
2501273d9f13SBarry Smith +  A - the matrix
2502273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
2503273d9f13SBarry Smith            (same value is used for all local rows)
2504273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
2505273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
2506273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
2507273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
2508273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
2509273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2510273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2511273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2512273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2513273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2514273d9f13SBarry Smith            structure. The size of this array is equal to the number
2515273d9f13SBarry Smith            of local rows, i.e 'm'.
2516273d9f13SBarry Smith 
251749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
251849a6f317SBarry Smith 
2519273d9f13SBarry Smith    The AIJ format (also called the Yale sparse matrix format or
2520ccd8e176SBarry Smith    compressed row storage (CSR)), is fully compatible with standard Fortran 77
2521ccd8e176SBarry Smith    storage.  The stored row and column indices begin with zero.  See the users manual for details.
2522273d9f13SBarry Smith 
2523273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2524273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2525273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2526273d9f13SBarry Smith 
2527273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2528273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2529273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2530273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2531273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2532273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2533273d9f13SBarry Smith 
2534273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2535273d9f13SBarry Smith 
2536273d9f13SBarry Smith    Example usage:
2537273d9f13SBarry Smith 
2538273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2539273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2540273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2541273d9f13SBarry Smith    as follows:
2542273d9f13SBarry Smith 
2543273d9f13SBarry Smith .vb
2544273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2545273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2546273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2547273d9f13SBarry Smith     -------------------------------------
2548273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2549273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2550273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2551273d9f13SBarry Smith     -------------------------------------
2552273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2553273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2554273d9f13SBarry Smith .ve
2555273d9f13SBarry Smith 
2556273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2557273d9f13SBarry Smith 
2558273d9f13SBarry Smith .vb
2559273d9f13SBarry Smith       A B C
2560273d9f13SBarry Smith       D E F
2561273d9f13SBarry Smith       G H I
2562273d9f13SBarry Smith .ve
2563273d9f13SBarry Smith 
2564273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2565273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2566273d9f13SBarry Smith 
2567273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2568273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2569273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2570273d9f13SBarry Smith 
2571273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2572273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2573273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2574273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2575273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2576273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2577273d9f13SBarry Smith 
2578273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2579273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2580273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2581273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2582273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2583273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2584273d9f13SBarry Smith .vb
2585273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2586273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2587273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2588273d9f13SBarry Smith .ve
2589273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2590273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2591273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2592273d9f13SBarry Smith    34 values.
2593273d9f13SBarry Smith 
2594273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2595273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2596273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2597273d9f13SBarry Smith .vb
2598273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2599273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2600273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2601273d9f13SBarry Smith .ve
2602273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2603273d9f13SBarry Smith    hence pre-allocation is perfect.
2604273d9f13SBarry Smith 
2605273d9f13SBarry Smith    Level: intermediate
2606273d9f13SBarry Smith 
2607273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2608273d9f13SBarry Smith 
2609ccd8e176SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIAIJ(), MatMPIAIJSetPreallocationCSR(),
2610ccd8e176SBarry Smith           MPIAIJ
2611273d9f13SBarry Smith @*/
2612be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2613273d9f13SBarry Smith {
2614b1d57f15SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2615273d9f13SBarry Smith 
2616273d9f13SBarry Smith   PetscFunctionBegin;
2617a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2618a23d5eceSKris Buschelman   if (f) {
2619a23d5eceSKris Buschelman     ierr = (*f)(B,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2620273d9f13SBarry Smith   }
2621273d9f13SBarry Smith   PetscFunctionReturn(0);
2622273d9f13SBarry Smith }
2623273d9f13SBarry Smith 
26244a2ae208SSatish Balay #undef __FUNCT__
26252fb0ec9aSBarry Smith #define __FUNCT__ "MatCreateMPIAIJWithArrays"
26262fb0ec9aSBarry Smith /*@C
26272fb0ec9aSBarry Smith      MatCreateMPIAIJWithArrays - creates a MPI AIJ matrix using arrays that contain in standard
26282fb0ec9aSBarry Smith          CSR format the local rows.
26292fb0ec9aSBarry Smith 
26302fb0ec9aSBarry Smith    Collective on MPI_Comm
26312fb0ec9aSBarry Smith 
26322fb0ec9aSBarry Smith    Input Parameters:
26332fb0ec9aSBarry Smith +  comm - MPI communicator
26342fb0ec9aSBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
26352fb0ec9aSBarry Smith .  n - This value should be the same as the local size used in creating the
26362fb0ec9aSBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
26372fb0ec9aSBarry Smith        calculated if N is given) For square matrices n is almost always m.
26382fb0ec9aSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
26392fb0ec9aSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
26402fb0ec9aSBarry Smith .   i - row indices
26412fb0ec9aSBarry Smith .   j - column indices
26422fb0ec9aSBarry Smith -   a - matrix values
26432fb0ec9aSBarry Smith 
26442fb0ec9aSBarry Smith    Output Parameter:
26452fb0ec9aSBarry Smith .   mat - the matrix
264603bfb495SBarry Smith 
26472fb0ec9aSBarry Smith    Level: intermediate
26482fb0ec9aSBarry Smith 
26492fb0ec9aSBarry Smith    Notes:
26502fb0ec9aSBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
26512fb0ec9aSBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2652*8d7a6e47SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
26532fb0ec9aSBarry Smith 
26542fb0ec9aSBarry Smith        The i and j indices are 0 based
26552fb0ec9aSBarry Smith 
26562fb0ec9aSBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
26572fb0ec9aSBarry Smith 
26582fb0ec9aSBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
2659*8d7a6e47SBarry Smith           MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays()
26602fb0ec9aSBarry Smith @*/
26612fb0ec9aSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIIJWithArrays(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
26622fb0ec9aSBarry Smith {
26632fb0ec9aSBarry Smith   PetscErrorCode ierr;
26642fb0ec9aSBarry Smith 
26652fb0ec9aSBarry Smith  PetscFunctionBegin;
26662fb0ec9aSBarry Smith   if (i[0]) {
26672fb0ec9aSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
26682fb0ec9aSBarry Smith   }
26692fb0ec9aSBarry Smith   if (m < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
26702fb0ec9aSBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
26712fb0ec9aSBarry Smith   ierr = MatSetType(*mat,MATMPIAIJ);CHKERRQ(ierr);
26722fb0ec9aSBarry Smith   ierr = MatMPIAIJSetPreallocationCSR(*mat,i,j,a);CHKERRQ(ierr);
26732fb0ec9aSBarry Smith   PetscFunctionReturn(0);
26742fb0ec9aSBarry Smith }
26752fb0ec9aSBarry Smith 
26762fb0ec9aSBarry Smith #undef __FUNCT__
26774a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIAIJ"
2678273d9f13SBarry Smith /*@C
2679273d9f13SBarry Smith    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
2680273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
2681273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2682273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2683273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2684273d9f13SBarry Smith 
2685273d9f13SBarry Smith    Collective on MPI_Comm
2686273d9f13SBarry Smith 
2687273d9f13SBarry Smith    Input Parameters:
2688273d9f13SBarry Smith +  comm - MPI communicator
2689273d9f13SBarry Smith .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2690273d9f13SBarry Smith            This value should be the same as the local size used in creating the
2691273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
2692273d9f13SBarry Smith .  n - This value should be the same as the local size used in creating the
2693273d9f13SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2694273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2695273d9f13SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2696273d9f13SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2697273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
2698273d9f13SBarry Smith            (same value is used for all local rows)
2699273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
2700273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
2701273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
2702273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
2703273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
2704273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2705273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2706273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2707273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2708273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2709273d9f13SBarry Smith            structure. The size of this array is equal to the number
2710273d9f13SBarry Smith            of local rows, i.e 'm'.
2711273d9f13SBarry Smith 
2712273d9f13SBarry Smith    Output Parameter:
2713273d9f13SBarry Smith .  A - the matrix
2714273d9f13SBarry Smith 
2715273d9f13SBarry Smith    Notes:
271649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
271749a6f317SBarry Smith 
2718273d9f13SBarry Smith    m,n,M,N parameters specify the size of the matrix, and its partitioning across
2719273d9f13SBarry Smith    processors, while d_nz,d_nnz,o_nz,o_nnz parameters specify the approximate
2720273d9f13SBarry Smith    storage requirements for this matrix.
2721273d9f13SBarry Smith 
2722273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one
2723273d9f13SBarry Smith    processor than it must be used on all processors that share the object for
2724273d9f13SBarry Smith    that argument.
2725273d9f13SBarry Smith 
2726273d9f13SBarry Smith    The user MUST specify either the local or global matrix dimensions
2727273d9f13SBarry Smith    (possibly both).
2728273d9f13SBarry Smith 
2729273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2730273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2731273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2732273d9f13SBarry Smith 
2733273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2734273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2735273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2736273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2737273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2738273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2739273d9f13SBarry Smith 
2740273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2741273d9f13SBarry Smith 
274297d05335SKris Buschelman    When calling this routine with a single process communicator, a matrix of
274397d05335SKris Buschelman    type SEQAIJ is returned.  If a matrix of type MPIAIJ is desired for this
274497d05335SKris Buschelman    type of communicator, use the construction mechanism:
274597d05335SKris Buschelman      MatCreate(...,&A); MatSetType(A,MPIAIJ); MatMPIAIJSetPreallocation(A,...);
274697d05335SKris Buschelman 
2747273d9f13SBarry Smith    By default, this format uses inodes (identical nodes) when possible.
2748273d9f13SBarry Smith    We search for consecutive rows with the same nonzero structure, thereby
2749273d9f13SBarry Smith    reusing matrix information to achieve increased efficiency.
2750273d9f13SBarry Smith 
2751273d9f13SBarry Smith    Options Database Keys:
2752923f20ffSKris Buschelman +  -mat_no_inode  - Do not use inodes
2753923f20ffSKris Buschelman .  -mat_inode_limit <limit> - Sets inode limit (max limit=5)
2754273d9f13SBarry Smith -  -mat_aij_oneindex - Internally use indexing starting at 1
2755273d9f13SBarry Smith         rather than 0.  Note that when calling MatSetValues(),
2756273d9f13SBarry Smith         the user still MUST index entries starting at 0!
2757273d9f13SBarry Smith 
2758273d9f13SBarry Smith 
2759273d9f13SBarry Smith    Example usage:
2760273d9f13SBarry Smith 
2761273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2762273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2763273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2764273d9f13SBarry Smith    as follows:
2765273d9f13SBarry Smith 
2766273d9f13SBarry Smith .vb
2767273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2768273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2769273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2770273d9f13SBarry Smith     -------------------------------------
2771273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2772273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2773273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2774273d9f13SBarry Smith     -------------------------------------
2775273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2776273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2777273d9f13SBarry Smith .ve
2778273d9f13SBarry Smith 
2779273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2780273d9f13SBarry Smith 
2781273d9f13SBarry Smith .vb
2782273d9f13SBarry Smith       A B C
2783273d9f13SBarry Smith       D E F
2784273d9f13SBarry Smith       G H I
2785273d9f13SBarry Smith .ve
2786273d9f13SBarry Smith 
2787273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2788273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2789273d9f13SBarry Smith 
2790273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2791273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2792273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2793273d9f13SBarry Smith 
2794273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2795273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2796273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2797273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2798273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2799273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2800273d9f13SBarry Smith 
2801273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2802273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2803273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2804273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2805273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2806273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2807273d9f13SBarry Smith .vb
2808273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2809273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2810273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2811273d9f13SBarry Smith .ve
2812273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2813273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2814273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2815273d9f13SBarry Smith    34 values.
2816273d9f13SBarry Smith 
2817273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2818273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2819273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2820273d9f13SBarry Smith .vb
2821273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2822273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2823273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2824273d9f13SBarry Smith .ve
2825273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2826273d9f13SBarry Smith    hence pre-allocation is perfect.
2827273d9f13SBarry Smith 
2828273d9f13SBarry Smith    Level: intermediate
2829273d9f13SBarry Smith 
2830273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2831273d9f13SBarry Smith 
2832ccd8e176SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
28332fb0ec9aSBarry Smith           MPIAIJ, MatCreateMPIAIJWithArrays()
2834273d9f13SBarry Smith @*/
2835be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJ(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2836273d9f13SBarry Smith {
28376849ba73SBarry Smith   PetscErrorCode ierr;
2838b1d57f15SBarry Smith   PetscMPIInt    size;
2839273d9f13SBarry Smith 
2840273d9f13SBarry Smith   PetscFunctionBegin;
2841f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2842f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2843273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2844273d9f13SBarry Smith   if (size > 1) {
2845273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIAIJ);CHKERRQ(ierr);
2846273d9f13SBarry Smith     ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2847273d9f13SBarry Smith   } else {
2848273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQAIJ);CHKERRQ(ierr);
2849273d9f13SBarry Smith     ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr);
2850273d9f13SBarry Smith   }
2851273d9f13SBarry Smith   PetscFunctionReturn(0);
2852273d9f13SBarry Smith }
2853195d93cdSBarry Smith 
28544a2ae208SSatish Balay #undef __FUNCT__
28554a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJGetSeqAIJ"
2856be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJGetSeqAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2857195d93cdSBarry Smith {
2858195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2859b1d57f15SBarry Smith 
2860195d93cdSBarry Smith   PetscFunctionBegin;
2861195d93cdSBarry Smith   *Ad     = a->A;
2862195d93cdSBarry Smith   *Ao     = a->B;
2863195d93cdSBarry Smith   *colmap = a->garray;
2864195d93cdSBarry Smith   PetscFunctionReturn(0);
2865195d93cdSBarry Smith }
2866a2243be0SBarry Smith 
2867a2243be0SBarry Smith #undef __FUNCT__
2868a2243be0SBarry Smith #define __FUNCT__ "MatSetColoring_MPIAIJ"
2869dfbe8321SBarry Smith PetscErrorCode MatSetColoring_MPIAIJ(Mat A,ISColoring coloring)
2870a2243be0SBarry Smith {
2871dfbe8321SBarry Smith   PetscErrorCode ierr;
2872b1d57f15SBarry Smith   PetscInt       i;
2873a2243be0SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
2874a2243be0SBarry Smith 
2875a2243be0SBarry Smith   PetscFunctionBegin;
2876a2243be0SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
287708b6dcc0SBarry Smith     ISColoringValue *allcolors,*colors;
2878a2243be0SBarry Smith     ISColoring      ocoloring;
2879a2243be0SBarry Smith 
2880a2243be0SBarry Smith     /* set coloring for diagonal portion */
2881a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,coloring);CHKERRQ(ierr);
2882a2243be0SBarry Smith 
2883a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
288408b6dcc0SBarry Smith     ierr = ISAllGatherColors(A->comm,coloring->n,coloring->colors,PETSC_NULL,&allcolors);CHKERRQ(ierr);
2885899cda47SBarry Smith     ierr = PetscMalloc((a->B->cmap.n+1)*sizeof(ISColoringValue),&colors);CHKERRQ(ierr);
2886899cda47SBarry Smith     for (i=0; i<a->B->cmap.n; i++) {
2887a2243be0SBarry Smith       colors[i] = allcolors[a->garray[i]];
2888a2243be0SBarry Smith     }
2889a2243be0SBarry Smith     ierr = PetscFree(allcolors);CHKERRQ(ierr);
289095a80f87SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,coloring->n,a->B->cmap.n,colors,&ocoloring);CHKERRQ(ierr);
2891a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2892a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2893a2243be0SBarry Smith   } else if (coloring->ctype == IS_COLORING_GHOSTED) {
289408b6dcc0SBarry Smith     ISColoringValue *colors;
2895b1d57f15SBarry Smith     PetscInt        *larray;
2896a2243be0SBarry Smith     ISColoring      ocoloring;
2897a2243be0SBarry Smith 
2898a2243be0SBarry Smith     /* set coloring for diagonal portion */
2899899cda47SBarry Smith     ierr = PetscMalloc((a->A->cmap.n+1)*sizeof(PetscInt),&larray);CHKERRQ(ierr);
2900899cda47SBarry Smith     for (i=0; i<a->A->cmap.n; i++) {
2901899cda47SBarry Smith       larray[i] = i + A->cmap.rstart;
2902a2243be0SBarry Smith     }
2903899cda47SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->A->cmap.n,larray,PETSC_NULL,larray);CHKERRQ(ierr);
2904899cda47SBarry Smith     ierr = PetscMalloc((a->A->cmap.n+1)*sizeof(ISColoringValue),&colors);CHKERRQ(ierr);
2905899cda47SBarry Smith     for (i=0; i<a->A->cmap.n; i++) {
2906a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2907a2243be0SBarry Smith     }
2908a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
290995a80f87SBarry Smith     ierr = ISColoringCreate(PETSC_COMM_SELF,coloring->n,a->A->cmap.n,colors,&ocoloring);CHKERRQ(ierr);
2910a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,ocoloring);CHKERRQ(ierr);
2911a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2912a2243be0SBarry Smith 
2913a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
2914899cda47SBarry Smith     ierr = PetscMalloc((a->B->cmap.n+1)*sizeof(PetscInt),&larray);CHKERRQ(ierr);
2915899cda47SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->B->cmap.n,a->garray,PETSC_NULL,larray);CHKERRQ(ierr);
2916899cda47SBarry Smith     ierr = PetscMalloc((a->B->cmap.n+1)*sizeof(ISColoringValue),&colors);CHKERRQ(ierr);
2917899cda47SBarry Smith     for (i=0; i<a->B->cmap.n; i++) {
2918a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2919a2243be0SBarry Smith     }
2920a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
292195a80f87SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,coloring->n,a->B->cmap.n,colors,&ocoloring);CHKERRQ(ierr);
2922a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2923a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2924a2243be0SBarry Smith   } else {
292577431f27SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"No support ISColoringType %d",(int)coloring->ctype);
2926a2243be0SBarry Smith   }
2927a2243be0SBarry Smith 
2928a2243be0SBarry Smith   PetscFunctionReturn(0);
2929a2243be0SBarry Smith }
2930a2243be0SBarry Smith 
2931dcf5cc72SBarry Smith #if defined(PETSC_HAVE_ADIC)
2932a2243be0SBarry Smith #undef __FUNCT__
2933779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdic_MPIAIJ"
2934dfbe8321SBarry Smith PetscErrorCode MatSetValuesAdic_MPIAIJ(Mat A,void *advalues)
2935a2243be0SBarry Smith {
2936a2243be0SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
2937dfbe8321SBarry Smith   PetscErrorCode ierr;
2938a2243be0SBarry Smith 
2939a2243be0SBarry Smith   PetscFunctionBegin;
2940779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->A,advalues);CHKERRQ(ierr);
2941779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->B,advalues);CHKERRQ(ierr);
2942779c1a83SBarry Smith   PetscFunctionReturn(0);
2943779c1a83SBarry Smith }
2944dcf5cc72SBarry Smith #endif
2945779c1a83SBarry Smith 
2946779c1a83SBarry Smith #undef __FUNCT__
2947779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdifor_MPIAIJ"
2948b1d57f15SBarry Smith PetscErrorCode MatSetValuesAdifor_MPIAIJ(Mat A,PetscInt nl,void *advalues)
2949779c1a83SBarry Smith {
2950779c1a83SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
2951dfbe8321SBarry Smith   PetscErrorCode ierr;
2952779c1a83SBarry Smith 
2953779c1a83SBarry Smith   PetscFunctionBegin;
2954779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->A,nl,advalues);CHKERRQ(ierr);
2955779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->B,nl,advalues);CHKERRQ(ierr);
2956a2243be0SBarry Smith   PetscFunctionReturn(0);
2957a2243be0SBarry Smith }
2958c5d6d63eSBarry Smith 
2959c5d6d63eSBarry Smith #undef __FUNCT__
296051dd7536SBarry Smith #define __FUNCT__ "MatMerge"
2961c5d6d63eSBarry Smith /*@C
296251dd7536SBarry Smith       MatMerge - Creates a single large PETSc matrix by concatinating sequential
296351dd7536SBarry Smith                  matrices from each processor
2964c5d6d63eSBarry Smith 
2965c5d6d63eSBarry Smith     Collective on MPI_Comm
2966c5d6d63eSBarry Smith 
2967c5d6d63eSBarry Smith    Input Parameters:
296851dd7536SBarry Smith +    comm - the communicators the parallel matrix will live on
2969d6bb3c2dSHong Zhang .    inmat - the input sequential matrices
29700e36024fSHong Zhang .    n - number of local columns (or PETSC_DECIDE)
2971d6bb3c2dSHong Zhang -    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
297251dd7536SBarry Smith 
297351dd7536SBarry Smith    Output Parameter:
297451dd7536SBarry Smith .    outmat - the parallel matrix generated
2975c5d6d63eSBarry Smith 
29767e25d530SSatish Balay     Level: advanced
29777e25d530SSatish Balay 
2978f08fae4eSHong Zhang    Notes: The number of columns of the matrix in EACH processor MUST be the same.
2979c5d6d63eSBarry Smith 
2980c5d6d63eSBarry Smith @*/
2981be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMerge(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
2982c5d6d63eSBarry Smith {
2983dfbe8321SBarry Smith   PetscErrorCode ierr;
2984b7940d39SSatish Balay   PetscInt       m,N,i,rstart,nnz,Ii,*dnz,*onz;
2985ba8c8a56SBarry Smith   PetscInt       *indx;
2986ba8c8a56SBarry Smith   PetscScalar    *values;
2987c5d6d63eSBarry Smith 
2988c5d6d63eSBarry Smith   PetscFunctionBegin;
29890e36024fSHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
2990d6bb3c2dSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
2991d6bb3c2dSHong Zhang     /* count nonzeros in each row, for diagonal and off diagonal portion of matrix */
29920e36024fSHong Zhang     if (n == PETSC_DECIDE){
2993357abbc8SBarry Smith       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
29940e36024fSHong Zhang     }
2995357abbc8SBarry Smith     ierr = MPI_Scan(&m, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
2996357abbc8SBarry Smith     rstart -= m;
2997d6bb3c2dSHong Zhang 
2998d6bb3c2dSHong Zhang     ierr = MatPreallocateInitialize(comm,m,n,dnz,onz);CHKERRQ(ierr);
2999d6bb3c2dSHong Zhang     for (i=0;i<m;i++) {
3000ba8c8a56SBarry Smith       ierr = MatGetRow_SeqAIJ(inmat,i,&nnz,&indx,PETSC_NULL);CHKERRQ(ierr);
3001d6bb3c2dSHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,indx,dnz,onz);CHKERRQ(ierr);
3002ba8c8a56SBarry Smith       ierr = MatRestoreRow_SeqAIJ(inmat,i,&nnz,&indx,PETSC_NULL);CHKERRQ(ierr);
3003d6bb3c2dSHong Zhang     }
3004d6bb3c2dSHong Zhang     /* This routine will ONLY return MPIAIJ type matrix */
3005f69a0ea3SMatthew Knepley     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
3006f69a0ea3SMatthew Knepley     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3007d6bb3c2dSHong Zhang     ierr = MatSetType(*outmat,MATMPIAIJ);CHKERRQ(ierr);
3008d6bb3c2dSHong Zhang     ierr = MatMPIAIJSetPreallocation(*outmat,0,dnz,0,onz);CHKERRQ(ierr);
3009d6bb3c2dSHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
3010d6bb3c2dSHong Zhang 
3011d6bb3c2dSHong Zhang   } else if (scall == MAT_REUSE_MATRIX){
3012d6bb3c2dSHong Zhang     ierr = MatGetOwnershipRange(*outmat,&rstart,PETSC_NULL);CHKERRQ(ierr);
3013d6bb3c2dSHong Zhang   } else {
301477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Invalid MatReuse %d",(int)scall);
3015d6bb3c2dSHong Zhang   }
3016d6bb3c2dSHong Zhang 
3017d6bb3c2dSHong Zhang   for (i=0;i<m;i++) {
3018ba8c8a56SBarry Smith     ierr = MatGetRow_SeqAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3019b7940d39SSatish Balay     Ii    = i + rstart;
3020b7940d39SSatish Balay     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
3021ba8c8a56SBarry Smith     ierr = MatRestoreRow_SeqAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3022d6bb3c2dSHong Zhang   }
3023d6bb3c2dSHong Zhang   ierr = MatDestroy(inmat);CHKERRQ(ierr);
3024d6bb3c2dSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3025d6bb3c2dSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
302651dd7536SBarry Smith 
3027c5d6d63eSBarry Smith   PetscFunctionReturn(0);
3028c5d6d63eSBarry Smith }
3029c5d6d63eSBarry Smith 
3030c5d6d63eSBarry Smith #undef __FUNCT__
3031c5d6d63eSBarry Smith #define __FUNCT__ "MatFileSplit"
3032dfbe8321SBarry Smith PetscErrorCode MatFileSplit(Mat A,char *outfile)
3033c5d6d63eSBarry Smith {
3034dfbe8321SBarry Smith   PetscErrorCode    ierr;
303532dcc486SBarry Smith   PetscMPIInt       rank;
3036b1d57f15SBarry Smith   PetscInt          m,N,i,rstart,nnz;
3037de4209c5SBarry Smith   size_t            len;
3038b1d57f15SBarry Smith   const PetscInt    *indx;
3039c5d6d63eSBarry Smith   PetscViewer       out;
3040c5d6d63eSBarry Smith   char              *name;
3041c5d6d63eSBarry Smith   Mat               B;
3042b3cc6726SBarry Smith   const PetscScalar *values;
3043c5d6d63eSBarry Smith 
3044c5d6d63eSBarry Smith   PetscFunctionBegin;
3045c5d6d63eSBarry Smith   ierr = MatGetLocalSize(A,&m,0);CHKERRQ(ierr);
3046c5d6d63eSBarry Smith   ierr = MatGetSize(A,0,&N);CHKERRQ(ierr);
3047f204ca49SKris Buschelman   /* Should this be the type of the diagonal block of A? */
3048f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
3049f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,m,N,m,N);CHKERRQ(ierr);
3050f204ca49SKris Buschelman   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
3051f204ca49SKris Buschelman   ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr);
3052c5d6d63eSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,0);CHKERRQ(ierr);
3053c5d6d63eSBarry Smith   for (i=0;i<m;i++) {
3054c5d6d63eSBarry Smith     ierr = MatGetRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
3055c5d6d63eSBarry Smith     ierr = MatSetValues(B,1,&i,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
3056c5d6d63eSBarry Smith     ierr = MatRestoreRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
3057c5d6d63eSBarry Smith   }
3058c5d6d63eSBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3059c5d6d63eSBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3060c5d6d63eSBarry Smith 
3061c5d6d63eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
3062c5d6d63eSBarry Smith   ierr = PetscStrlen(outfile,&len);CHKERRQ(ierr);
3063c5d6d63eSBarry Smith   ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr);
3064c5d6d63eSBarry Smith   sprintf(name,"%s.%d",outfile,rank);
3065852598b0SBarry Smith   ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,FILE_MODE_APPEND,&out);CHKERRQ(ierr);
3066c5d6d63eSBarry Smith   ierr = PetscFree(name);
3067c5d6d63eSBarry Smith   ierr = MatView(B,out);CHKERRQ(ierr);
3068c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(out);CHKERRQ(ierr);
3069c5d6d63eSBarry Smith   ierr = MatDestroy(B);CHKERRQ(ierr);
3070c5d6d63eSBarry Smith   PetscFunctionReturn(0);
3071c5d6d63eSBarry Smith }
3072e5f2cdd8SHong Zhang 
307351a7d1a8SHong Zhang EXTERN PetscErrorCode MatDestroy_MPIAIJ(Mat);
307451a7d1a8SHong Zhang #undef __FUNCT__
307551a7d1a8SHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_SeqsToMPI"
3076be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatDestroy_MPIAIJ_SeqsToMPI(Mat A)
307751a7d1a8SHong Zhang {
307851a7d1a8SHong Zhang   PetscErrorCode       ierr;
3079671beff6SHong Zhang   Mat_Merge_SeqsToMPI  *merge;
3080671beff6SHong Zhang   PetscObjectContainer container;
308151a7d1a8SHong Zhang 
308251a7d1a8SHong Zhang   PetscFunctionBegin;
3083671beff6SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"MatMergeSeqsToMPI",(PetscObject *)&container);CHKERRQ(ierr);
3084671beff6SHong Zhang   if (container) {
30857f79fd58SMatthew Knepley     ierr = PetscObjectContainerGetPointer(container,(void **)&merge);CHKERRQ(ierr);
308651a7d1a8SHong Zhang     ierr = PetscFree(merge->id_r);CHKERRQ(ierr);
30873e06a4e6SHong Zhang     ierr = PetscFree(merge->len_s);CHKERRQ(ierr);
30883e06a4e6SHong Zhang     ierr = PetscFree(merge->len_r);CHKERRQ(ierr);
308951a7d1a8SHong Zhang     ierr = PetscFree(merge->bi);CHKERRQ(ierr);
309051a7d1a8SHong Zhang     ierr = PetscFree(merge->bj);CHKERRQ(ierr);
309102c68681SHong Zhang     ierr = PetscFree(merge->buf_ri);CHKERRQ(ierr);
309202c68681SHong Zhang     ierr = PetscFree(merge->buf_rj);CHKERRQ(ierr);
309305b42c5fSBarry Smith     ierr = PetscFree(merge->coi);CHKERRQ(ierr);
309405b42c5fSBarry Smith     ierr = PetscFree(merge->coj);CHKERRQ(ierr);
309505b42c5fSBarry Smith     ierr = PetscFree(merge->owners_co);CHKERRQ(ierr);
30962c72b5baSSatish Balay     ierr = PetscFree(merge->rowmap.range);CHKERRQ(ierr);
3097671beff6SHong Zhang 
3098671beff6SHong Zhang     ierr = PetscObjectContainerDestroy(container);CHKERRQ(ierr);
3099671beff6SHong Zhang     ierr = PetscObjectCompose((PetscObject)A,"MatMergeSeqsToMPI",0);CHKERRQ(ierr);
3100671beff6SHong Zhang   }
310151a7d1a8SHong Zhang   ierr = PetscFree(merge);CHKERRQ(ierr);
310251a7d1a8SHong Zhang 
310351a7d1a8SHong Zhang   ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr);
310451a7d1a8SHong Zhang   PetscFunctionReturn(0);
310551a7d1a8SHong Zhang }
310651a7d1a8SHong Zhang 
310758cb9c82SHong Zhang #include "src/mat/utils/freespace.h"
3108be0fcf8dSHong Zhang #include "petscbt.h"
310938f152feSBarry Smith static PetscEvent logkey_seqstompinum = 0;
3110e5f2cdd8SHong Zhang #undef __FUNCT__
311138f152feSBarry Smith #define __FUNCT__ "MatMerge_SeqsToMPINumeric"
3112e5f2cdd8SHong Zhang /*@C
3113f08fae4eSHong Zhang       MatMerge_SeqsToMPI - Creates a MPIAIJ matrix by adding sequential
3114e5f2cdd8SHong Zhang                  matrices from each processor
3115e5f2cdd8SHong Zhang 
3116e5f2cdd8SHong Zhang     Collective on MPI_Comm
3117e5f2cdd8SHong Zhang 
3118e5f2cdd8SHong Zhang    Input Parameters:
3119e5f2cdd8SHong Zhang +    comm - the communicators the parallel matrix will live on
3120f08fae4eSHong Zhang .    seqmat - the input sequential matrices
31210e36024fSHong Zhang .    m - number of local rows (or PETSC_DECIDE)
31220e36024fSHong Zhang .    n - number of local columns (or PETSC_DECIDE)
3123e5f2cdd8SHong Zhang -    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
3124e5f2cdd8SHong Zhang 
3125e5f2cdd8SHong Zhang    Output Parameter:
3126f08fae4eSHong Zhang .    mpimat - the parallel matrix generated
3127e5f2cdd8SHong Zhang 
3128e5f2cdd8SHong Zhang     Level: advanced
3129e5f2cdd8SHong Zhang 
3130affca5deSHong Zhang    Notes:
3131affca5deSHong Zhang      The dimensions of the sequential matrix in each processor MUST be the same.
3132affca5deSHong Zhang      The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
3133affca5deSHong Zhang      destroyed when mpimat is destroyed. Call PetscObjectQuery() to access seqmat.
3134e5f2cdd8SHong Zhang @*/
3135be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPINumeric(Mat seqmat,Mat mpimat)
313655d1abb9SHong Zhang {
313755d1abb9SHong Zhang   PetscErrorCode       ierr;
313855d1abb9SHong Zhang   MPI_Comm             comm=mpimat->comm;
313955d1abb9SHong Zhang   Mat_SeqAIJ           *a=(Mat_SeqAIJ*)seqmat->data;
3140b1d57f15SBarry Smith   PetscMPIInt          size,rank,taga,*len_s;
3141899cda47SBarry Smith   PetscInt             N=mpimat->cmap.N,i,j,*owners,*ai=a->i,*aj=a->j;
3142b1d57f15SBarry Smith   PetscInt             proc,m;
3143b1d57f15SBarry Smith   PetscInt             **buf_ri,**buf_rj;
3144b1d57f15SBarry Smith   PetscInt             k,anzi,*bj_i,*bi,*bj,arow,bnzi,nextaj;
3145b1d57f15SBarry Smith   PetscInt             nrows,**buf_ri_k,**nextrow,**nextai;
314655d1abb9SHong Zhang   MPI_Request          *s_waits,*r_waits;
314755d1abb9SHong Zhang   MPI_Status           *status;
3148ce805ee4SHong Zhang   MatScalar            *aa=a->a,**abuf_r,*ba_i;
314955d1abb9SHong Zhang   Mat_Merge_SeqsToMPI  *merge;
315055d1abb9SHong Zhang   PetscObjectContainer container;
315155d1abb9SHong Zhang 
315255d1abb9SHong Zhang   PetscFunctionBegin;
31533c2c1871SHong Zhang   if (!logkey_seqstompinum) {
31543c2c1871SHong Zhang     ierr = PetscLogEventRegister(&logkey_seqstompinum,"MatMerge_SeqsToMPINumeric",MAT_COOKIE);
31553c2c1871SHong Zhang   }
31563c2c1871SHong Zhang   ierr = PetscLogEventBegin(logkey_seqstompinum,seqmat,0,0,0);CHKERRQ(ierr);
31573c2c1871SHong Zhang 
315855d1abb9SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
315955d1abb9SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
316055d1abb9SHong Zhang 
316155d1abb9SHong Zhang   ierr = PetscObjectQuery((PetscObject)mpimat,"MatMergeSeqsToMPI",(PetscObject *)&container);CHKERRQ(ierr);
316255d1abb9SHong Zhang   if (container) {
316355d1abb9SHong Zhang     ierr  = PetscObjectContainerGetPointer(container,(void **)&merge);CHKERRQ(ierr);
316455d1abb9SHong Zhang   }
316555d1abb9SHong Zhang   bi     = merge->bi;
316655d1abb9SHong Zhang   bj     = merge->bj;
316755d1abb9SHong Zhang   buf_ri = merge->buf_ri;
316855d1abb9SHong Zhang   buf_rj = merge->buf_rj;
316955d1abb9SHong Zhang 
317055d1abb9SHong Zhang   ierr   = PetscMalloc(size*sizeof(MPI_Status),&status);CHKERRQ(ierr);
3171357abbc8SBarry Smith   owners = merge->rowmap.range;
317255d1abb9SHong Zhang   len_s  = merge->len_s;
317355d1abb9SHong Zhang 
317455d1abb9SHong Zhang   /* send and recv matrix values */
317555d1abb9SHong Zhang   /*-----------------------------*/
3176357abbc8SBarry Smith   ierr = PetscObjectGetNewTag((PetscObject)mpimat,&taga);CHKERRQ(ierr);
317755d1abb9SHong Zhang   ierr = PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits);CHKERRQ(ierr);
317855d1abb9SHong Zhang 
317955d1abb9SHong Zhang   ierr = PetscMalloc((merge->nsend+1)*sizeof(MPI_Request),&s_waits);CHKERRQ(ierr);
318055d1abb9SHong Zhang   for (proc=0,k=0; proc<size; proc++){
318155d1abb9SHong Zhang     if (!len_s[proc]) continue;
318255d1abb9SHong Zhang     i = owners[proc];
318355d1abb9SHong Zhang     ierr = MPI_Isend(aa+ai[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k);CHKERRQ(ierr);
318455d1abb9SHong Zhang     k++;
318555d1abb9SHong Zhang   }
318655d1abb9SHong Zhang 
31870c468ba9SBarry Smith   if (merge->nrecv) {ierr = MPI_Waitall(merge->nrecv,r_waits,status);CHKERRQ(ierr);}
31880c468ba9SBarry Smith   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,s_waits,status);CHKERRQ(ierr);}
318955d1abb9SHong Zhang   ierr = PetscFree(status);CHKERRQ(ierr);
319055d1abb9SHong Zhang 
319155d1abb9SHong Zhang   ierr = PetscFree(s_waits);CHKERRQ(ierr);
319255d1abb9SHong Zhang   ierr = PetscFree(r_waits);CHKERRQ(ierr);
319355d1abb9SHong Zhang 
319455d1abb9SHong Zhang   /* insert mat values of mpimat */
319555d1abb9SHong Zhang   /*----------------------------*/
319655d1abb9SHong Zhang   ierr = PetscMalloc(N*sizeof(MatScalar),&ba_i);CHKERRQ(ierr);
3197b1d57f15SBarry Smith   ierr = PetscMalloc((3*merge->nrecv+1)*sizeof(PetscInt**),&buf_ri_k);CHKERRQ(ierr);
319855d1abb9SHong Zhang   nextrow = buf_ri_k + merge->nrecv;
319955d1abb9SHong Zhang   nextai  = nextrow + merge->nrecv;
320055d1abb9SHong Zhang 
320155d1abb9SHong Zhang   for (k=0; k<merge->nrecv; k++){
320255d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
320355d1abb9SHong Zhang     nrows = *(buf_ri_k[k]);
320455d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
320555d1abb9SHong Zhang     nextai[k]   = buf_ri_k[k] + (nrows + 1);/* poins to the next i-structure of k-th recved i-structure  */
320655d1abb9SHong Zhang   }
320755d1abb9SHong Zhang 
320855d1abb9SHong Zhang   /* set values of ba */
3209357abbc8SBarry Smith   m = merge->rowmap.n;
321055d1abb9SHong Zhang   for (i=0; i<m; i++) {
321155d1abb9SHong Zhang     arow = owners[rank] + i;
321255d1abb9SHong Zhang     bj_i = bj+bi[i];  /* col indices of the i-th row of mpimat */
321355d1abb9SHong Zhang     bnzi = bi[i+1] - bi[i];
321455d1abb9SHong Zhang     ierr = PetscMemzero(ba_i,bnzi*sizeof(MatScalar));CHKERRQ(ierr);
321555d1abb9SHong Zhang 
321655d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
321755d1abb9SHong Zhang     anzi = ai[arow+1] - ai[arow];
321855d1abb9SHong Zhang     aj   = a->j + ai[arow];
321955d1abb9SHong Zhang     aa   = a->a + ai[arow];
322055d1abb9SHong Zhang     nextaj = 0;
322155d1abb9SHong Zhang     for (j=0; nextaj<anzi; j++){
322255d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]){ /* bcol == acol */
322355d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
322455d1abb9SHong Zhang       }
322555d1abb9SHong Zhang     }
322655d1abb9SHong Zhang 
322755d1abb9SHong Zhang     /* add received vals into ba */
322855d1abb9SHong Zhang     for (k=0; k<merge->nrecv; k++){ /* k-th received message */
322955d1abb9SHong Zhang       /* i-th row */
323055d1abb9SHong Zhang       if (i == *nextrow[k]) {
323155d1abb9SHong Zhang         anzi = *(nextai[k]+1) - *nextai[k];
323255d1abb9SHong Zhang         aj   = buf_rj[k] + *(nextai[k]);
323355d1abb9SHong Zhang         aa   = abuf_r[k] + *(nextai[k]);
323455d1abb9SHong Zhang         nextaj = 0;
323555d1abb9SHong Zhang         for (j=0; nextaj<anzi; j++){
323655d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]){ /* bcol == acol */
323755d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
323855d1abb9SHong Zhang           }
323955d1abb9SHong Zhang         }
324055d1abb9SHong Zhang         nextrow[k]++; nextai[k]++;
324155d1abb9SHong Zhang       }
324255d1abb9SHong Zhang     }
324355d1abb9SHong Zhang     ierr = MatSetValues(mpimat,1,&arow,bnzi,bj_i,ba_i,INSERT_VALUES);CHKERRQ(ierr);
324455d1abb9SHong Zhang   }
324555d1abb9SHong Zhang   ierr = MatAssemblyBegin(mpimat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
324655d1abb9SHong Zhang   ierr = MatAssemblyEnd(mpimat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
324755d1abb9SHong Zhang 
324855d1abb9SHong Zhang   ierr = PetscFree(abuf_r);CHKERRQ(ierr);
324955d1abb9SHong Zhang   ierr = PetscFree(ba_i);CHKERRQ(ierr);
325055d1abb9SHong Zhang   ierr = PetscFree(buf_ri_k);CHKERRQ(ierr);
32513c2c1871SHong Zhang   ierr = PetscLogEventEnd(logkey_seqstompinum,seqmat,0,0,0);CHKERRQ(ierr);
325255d1abb9SHong Zhang   PetscFunctionReturn(0);
325355d1abb9SHong Zhang }
325438f152feSBarry Smith 
32553c2c1871SHong Zhang static PetscEvent logkey_seqstompisym = 0;
325638f152feSBarry Smith #undef __FUNCT__
325738f152feSBarry Smith #define __FUNCT__ "MatMerge_SeqsToMPISymbolic"
3258be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPISymbolic(MPI_Comm comm,Mat seqmat,PetscInt m,PetscInt n,Mat *mpimat)
3259e5f2cdd8SHong Zhang {
3260f08fae4eSHong Zhang   PetscErrorCode       ierr;
326155a3bba9SHong Zhang   Mat                  B_mpi;
3262c2234fe3SHong Zhang   Mat_SeqAIJ           *a=(Mat_SeqAIJ*)seqmat->data;
3263b1d57f15SBarry Smith   PetscMPIInt          size,rank,tagi,tagj,*len_s,*len_si,*len_ri;
3264b1d57f15SBarry Smith   PetscInt             **buf_rj,**buf_ri,**buf_ri_k;
3265899cda47SBarry Smith   PetscInt             M=seqmat->rmap.n,N=seqmat->cmap.n,i,*owners,*ai=a->i,*aj=a->j;
3266b1d57f15SBarry Smith   PetscInt             len,proc,*dnz,*onz;
3267b1d57f15SBarry Smith   PetscInt             k,anzi,*bi,*bj,*lnk,nlnk,arow,bnzi,nspacedouble=0;
3268b1d57f15SBarry Smith   PetscInt             nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextai;
326955d1abb9SHong Zhang   MPI_Request          *si_waits,*sj_waits,*ri_waits,*rj_waits;
327058cb9c82SHong Zhang   MPI_Status           *status;
3271a1a86e44SBarry Smith   PetscFreeSpaceList   free_space=PETSC_NULL,current_space=PETSC_NULL;
3272be0fcf8dSHong Zhang   PetscBT              lnkbt;
327351a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI  *merge;
3274671beff6SHong Zhang   PetscObjectContainer container;
327502c68681SHong Zhang 
3276e5f2cdd8SHong Zhang   PetscFunctionBegin;
32773c2c1871SHong Zhang   if (!logkey_seqstompisym) {
32783c2c1871SHong Zhang     ierr = PetscLogEventRegister(&logkey_seqstompisym,"MatMerge_SeqsToMPISymbolic",MAT_COOKIE);
32793c2c1871SHong Zhang   }
32803c2c1871SHong Zhang   ierr = PetscLogEventBegin(logkey_seqstompisym,seqmat,0,0,0);CHKERRQ(ierr);
32813c2c1871SHong Zhang 
328238f152feSBarry Smith   /* make sure it is a PETSc comm */
328338f152feSBarry Smith   ierr = PetscCommDuplicate(comm,&comm,PETSC_NULL);CHKERRQ(ierr);
3284e5f2cdd8SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3285e5f2cdd8SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
328655d1abb9SHong Zhang 
328751a7d1a8SHong Zhang   ierr = PetscNew(Mat_Merge_SeqsToMPI,&merge);CHKERRQ(ierr);
3288c2234fe3SHong Zhang   ierr = PetscMalloc(size*sizeof(MPI_Status),&status);CHKERRQ(ierr);
3289e5f2cdd8SHong Zhang 
32906abd8857SHong Zhang   /* determine row ownership */
3291f08fae4eSHong Zhang   /*---------------------------------------------------------*/
3292899cda47SBarry Smith   merge->rowmap.n = m;
3293899cda47SBarry Smith   merge->rowmap.N = M;
3294fc42d0c8SSatish Balay   merge->rowmap.bs = 1;
3295899cda47SBarry Smith   ierr = PetscMapInitialize(comm,&merge->rowmap);CHKERRQ(ierr);
3296b1d57f15SBarry Smith   ierr = PetscMalloc(size*sizeof(PetscMPIInt),&len_si);CHKERRQ(ierr);
3297b1d57f15SBarry Smith   ierr = PetscMalloc(size*sizeof(PetscMPIInt),&merge->len_s);CHKERRQ(ierr);
329855d1abb9SHong Zhang 
3299357abbc8SBarry Smith   m      = merge->rowmap.n;
3300357abbc8SBarry Smith   M      = merge->rowmap.N;
3301357abbc8SBarry Smith   owners = merge->rowmap.range;
33026abd8857SHong Zhang 
33036abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
33046abd8857SHong Zhang   /*---------------------------------------------------------*/
33053e06a4e6SHong Zhang   len_s  = merge->len_s;
330651a7d1a8SHong Zhang 
33072257cef7SHong Zhang   len = 0;  /* length of buf_si[] */
3308c2234fe3SHong Zhang   merge->nsend = 0;
3309409913e3SHong Zhang   for (proc=0; proc<size; proc++){
33102257cef7SHong Zhang     len_si[proc] = 0;
33113e06a4e6SHong Zhang     if (proc == rank){
33126abd8857SHong Zhang       len_s[proc] = 0;
33133e06a4e6SHong Zhang     } else {
331402c68681SHong Zhang       len_si[proc] = owners[proc+1] - owners[proc] + 1;
33153e06a4e6SHong Zhang       len_s[proc] = ai[owners[proc+1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
33163e06a4e6SHong Zhang     }
33173e06a4e6SHong Zhang     if (len_s[proc]) {
3318c2234fe3SHong Zhang       merge->nsend++;
33192257cef7SHong Zhang       nrows = 0;
33202257cef7SHong Zhang       for (i=owners[proc]; i<owners[proc+1]; i++){
33212257cef7SHong Zhang         if (ai[i+1] > ai[i]) nrows++;
33222257cef7SHong Zhang       }
33232257cef7SHong Zhang       len_si[proc] = 2*(nrows+1);
33242257cef7SHong Zhang       len += len_si[proc];
3325409913e3SHong Zhang     }
332658cb9c82SHong Zhang   }
3327409913e3SHong Zhang 
33282257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
33292257cef7SHong Zhang   /*-------------------------------------------------------------------------*/
333051a7d1a8SHong Zhang   ierr = PetscGatherNumberOfMessages(comm,PETSC_NULL,len_s,&merge->nrecv);CHKERRQ(ierr);
333155d1abb9SHong Zhang   ierr = PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri);CHKERRQ(ierr);
3332671beff6SHong Zhang 
33333e06a4e6SHong Zhang   /* post the Irecv of j-structure */
33343e06a4e6SHong Zhang   /*-------------------------------*/
33352c72b5baSSatish Balay   ierr = PetscCommGetNewTag(comm,&tagj);CHKERRQ(ierr);
33363e06a4e6SHong Zhang   ierr = PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rj_waits);CHKERRQ(ierr);
333702c68681SHong Zhang 
33383e06a4e6SHong Zhang   /* post the Isend of j-structure */
3339affca5deSHong Zhang   /*--------------------------------*/
33402257cef7SHong Zhang   ierr = PetscMalloc((2*merge->nsend+1)*sizeof(MPI_Request),&si_waits);CHKERRQ(ierr);
334102c68681SHong Zhang   sj_waits = si_waits + merge->nsend;
33423e06a4e6SHong Zhang 
33432257cef7SHong Zhang   for (proc=0, k=0; proc<size; proc++){
3344409913e3SHong Zhang     if (!len_s[proc]) continue;
334502c68681SHong Zhang     i = owners[proc];
3346b1d57f15SBarry Smith     ierr = MPI_Isend(aj+ai[i],len_s[proc],MPIU_INT,proc,tagj,comm,sj_waits+k);CHKERRQ(ierr);
334751a7d1a8SHong Zhang     k++;
334851a7d1a8SHong Zhang   }
334951a7d1a8SHong Zhang 
33503e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
33513e06a4e6SHong Zhang   /*------------------------------------------------*/
33520c468ba9SBarry Smith   if (merge->nrecv) {ierr = MPI_Waitall(merge->nrecv,rj_waits,status);CHKERRQ(ierr);}
33530c468ba9SBarry Smith   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,sj_waits,status);CHKERRQ(ierr);}
335402c68681SHong Zhang 
335502c68681SHong Zhang   /* send and recv i-structure */
335602c68681SHong Zhang   /*---------------------------*/
33572c72b5baSSatish Balay   ierr = PetscCommGetNewTag(comm,&tagi);CHKERRQ(ierr);
335802c68681SHong Zhang   ierr = PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&ri_waits);CHKERRQ(ierr);
335902c68681SHong Zhang 
3360b1d57f15SBarry Smith   ierr = PetscMalloc((len+1)*sizeof(PetscInt),&buf_s);CHKERRQ(ierr);
33613e06a4e6SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
33622257cef7SHong Zhang   for (proc=0,k=0; proc<size; proc++){
336302c68681SHong Zhang     if (!len_s[proc]) continue;
33643e06a4e6SHong Zhang     /* form outgoing message for i-structure:
33653e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
33663e06a4e6SHong Zhang                [1:nrows]:           row index (global)
33673e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
33683e06a4e6SHong Zhang     */
33693e06a4e6SHong Zhang     /*-------------------------------------------*/
33702257cef7SHong Zhang     nrows = len_si[proc]/2 - 1;
33713e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows+1;
33723e06a4e6SHong Zhang     buf_si[0]   = nrows;
33733e06a4e6SHong Zhang     buf_si_i[0] = 0;
33743e06a4e6SHong Zhang     nrows = 0;
33753e06a4e6SHong Zhang     for (i=owners[proc]; i<owners[proc+1]; i++){
33763e06a4e6SHong Zhang       anzi = ai[i+1] - ai[i];
33773e06a4e6SHong Zhang       if (anzi) {
33783e06a4e6SHong Zhang         buf_si_i[nrows+1] = buf_si_i[nrows] + anzi; /* i-structure */
33793e06a4e6SHong Zhang         buf_si[nrows+1] = i-owners[proc]; /* local row index */
33803e06a4e6SHong Zhang         nrows++;
33813e06a4e6SHong Zhang       }
33823e06a4e6SHong Zhang     }
3383b1d57f15SBarry Smith     ierr = MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,si_waits+k);CHKERRQ(ierr);
338402c68681SHong Zhang     k++;
33852257cef7SHong Zhang     buf_si += len_si[proc];
338602c68681SHong Zhang   }
33872257cef7SHong Zhang 
33880c468ba9SBarry Smith   if (merge->nrecv) {ierr = MPI_Waitall(merge->nrecv,ri_waits,status);CHKERRQ(ierr);}
33890c468ba9SBarry Smith   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,si_waits,status);CHKERRQ(ierr);}
339002c68681SHong Zhang 
3391ae15b995SBarry Smith   ierr = PetscInfo2(seqmat,"nsend: %D, nrecv: %D\n",merge->nsend,merge->nrecv);CHKERRQ(ierr);
33923e06a4e6SHong Zhang   for (i=0; i<merge->nrecv; i++){
3393ae15b995SBarry Smith     ierr = PetscInfo3(seqmat,"recv len_ri=%D, len_rj=%D from [%D]\n",len_ri[i],merge->len_r[i],merge->id_r[i]);CHKERRQ(ierr);
33943e06a4e6SHong Zhang   }
33953e06a4e6SHong Zhang 
33963e06a4e6SHong Zhang   ierr = PetscFree(len_si);CHKERRQ(ierr);
339702c68681SHong Zhang   ierr = PetscFree(len_ri);CHKERRQ(ierr);
339802c68681SHong Zhang   ierr = PetscFree(rj_waits);CHKERRQ(ierr);
33993e06a4e6SHong Zhang   ierr = PetscFree(si_waits);CHKERRQ(ierr);
34002257cef7SHong Zhang   ierr = PetscFree(ri_waits);CHKERRQ(ierr);
34013e06a4e6SHong Zhang   ierr = PetscFree(buf_s);CHKERRQ(ierr);
3402bcc1bcd5SHong Zhang   ierr = PetscFree(status);CHKERRQ(ierr);
340358cb9c82SHong Zhang 
3404bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
3405bcc1bcd5SHong Zhang   /*----------------------------------------------*/
340658cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
3407b1d57f15SBarry Smith   ierr = PetscMalloc((m+1)*sizeof(PetscInt),&bi);CHKERRQ(ierr);
340858cb9c82SHong Zhang   bi[0] = 0;
340958cb9c82SHong Zhang 
3410be0fcf8dSHong Zhang   /* create and initialize a linked list */
3411be0fcf8dSHong Zhang   nlnk = N+1;
3412be0fcf8dSHong Zhang   ierr = PetscLLCreate(N,N,nlnk,lnk,lnkbt);CHKERRQ(ierr);
341358cb9c82SHong Zhang 
3414bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
341558cb9c82SHong Zhang   len = 0;
3416bcc1bcd5SHong Zhang   len  = ai[owners[rank+1]] - ai[owners[rank]];
3417a1a86e44SBarry Smith   ierr = PetscFreeSpaceGet((PetscInt)(2*len+1),&free_space);CHKERRQ(ierr);
341858cb9c82SHong Zhang   current_space = free_space;
341958cb9c82SHong Zhang 
3420bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
3421b1d57f15SBarry Smith   ierr = PetscMalloc((3*merge->nrecv+1)*sizeof(PetscInt**),&buf_ri_k);CHKERRQ(ierr);
34223e06a4e6SHong Zhang   nextrow = buf_ri_k + merge->nrecv;
34233e06a4e6SHong Zhang   nextai  = nextrow + merge->nrecv;
34243e06a4e6SHong Zhang   for (k=0; k<merge->nrecv; k++){
34252257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
34263e06a4e6SHong Zhang     nrows = *buf_ri_k[k];
34273e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
34282257cef7SHong Zhang     nextai[k]   = buf_ri_k[k] + (nrows + 1);/* poins to the next i-structure of k-th recved i-structure  */
34293e06a4e6SHong Zhang   }
34302257cef7SHong Zhang 
3431bcc1bcd5SHong Zhang   ierr = MatPreallocateInitialize(comm,m,n,dnz,onz);CHKERRQ(ierr);
3432bcc1bcd5SHong Zhang   len = 0;
343358cb9c82SHong Zhang   for (i=0;i<m;i++) {
343458cb9c82SHong Zhang     bnzi   = 0;
343558cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
343658cb9c82SHong Zhang     arow   = owners[rank] + i;
343758cb9c82SHong Zhang     anzi   = ai[arow+1] - ai[arow];
343858cb9c82SHong Zhang     aj     = a->j + ai[arow];
3439be0fcf8dSHong Zhang     ierr = PetscLLAdd(anzi,aj,N,nlnk,lnk,lnkbt);CHKERRQ(ierr);
344058cb9c82SHong Zhang     bnzi += nlnk;
344158cb9c82SHong Zhang     /* add received col data into lnk */
344251a7d1a8SHong Zhang     for (k=0; k<merge->nrecv; k++){ /* k-th received message */
344355d1abb9SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
34443e06a4e6SHong Zhang         anzi = *(nextai[k]+1) - *nextai[k];
34453e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
34463e06a4e6SHong Zhang         ierr = PetscLLAdd(anzi,aj,N,nlnk,lnk,lnkbt);CHKERRQ(ierr);
34473e06a4e6SHong Zhang         bnzi += nlnk;
34483e06a4e6SHong Zhang         nextrow[k]++; nextai[k]++;
34493e06a4e6SHong Zhang       }
345058cb9c82SHong Zhang     }
3451bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi;  /* =max(bnzi) */
345258cb9c82SHong Zhang 
345358cb9c82SHong Zhang     /* if free space is not available, make more free space */
345458cb9c82SHong Zhang     if (current_space->local_remaining<bnzi) {
3455a1a86e44SBarry Smith       ierr = PetscFreeSpaceGet(current_space->total_array_size,&current_space);CHKERRQ(ierr);
345658cb9c82SHong Zhang       nspacedouble++;
345758cb9c82SHong Zhang     }
345858cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
3459be0fcf8dSHong Zhang     ierr = PetscLLClean(N,N,bnzi,lnk,current_space->array,lnkbt);CHKERRQ(ierr);
3460bcc1bcd5SHong Zhang     ierr = MatPreallocateSet(i+owners[rank],bnzi,current_space->array,dnz,onz);CHKERRQ(ierr);
3461bcc1bcd5SHong Zhang 
346258cb9c82SHong Zhang     current_space->array           += bnzi;
346358cb9c82SHong Zhang     current_space->local_used      += bnzi;
346458cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
346558cb9c82SHong Zhang 
346658cb9c82SHong Zhang     bi[i+1] = bi[i] + bnzi;
346758cb9c82SHong Zhang   }
3468bcc1bcd5SHong Zhang 
3469bcc1bcd5SHong Zhang   ierr = PetscFree(buf_ri_k);CHKERRQ(ierr);
3470bcc1bcd5SHong Zhang 
3471b1d57f15SBarry Smith   ierr = PetscMalloc((bi[m]+1)*sizeof(PetscInt),&bj);CHKERRQ(ierr);
3472a1a86e44SBarry Smith   ierr = PetscFreeSpaceContiguous(&free_space,bj);CHKERRQ(ierr);
3473be0fcf8dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
3474409913e3SHong Zhang 
3475bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
3476bcc1bcd5SHong Zhang   /*---------------------------------------*/
3477f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B_mpi);CHKERRQ(ierr);
347854b84b50SHong Zhang   if (n==PETSC_DECIDE) {
3479f69a0ea3SMatthew Knepley     ierr = MatSetSizes(B_mpi,m,n,PETSC_DETERMINE,N);CHKERRQ(ierr);
348054b84b50SHong Zhang   } else {
3481f69a0ea3SMatthew Knepley     ierr = MatSetSizes(B_mpi,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
348254b84b50SHong Zhang   }
3483bcc1bcd5SHong Zhang   ierr = MatSetType(B_mpi,MATMPIAIJ);CHKERRQ(ierr);
3484bcc1bcd5SHong Zhang   ierr = MatMPIAIJSetPreallocation(B_mpi,0,dnz,0,onz);CHKERRQ(ierr);
3485bcc1bcd5SHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
348658cb9c82SHong Zhang 
34876abd8857SHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatMerge_SeqsToMPINumeric() */
34886abd8857SHong Zhang   B_mpi->assembled     = PETSC_FALSE;
3489affca5deSHong Zhang   B_mpi->ops->destroy  = MatDestroy_MPIAIJ_SeqsToMPI;
3490affca5deSHong Zhang   merge->bi            = bi;
3491affca5deSHong Zhang   merge->bj            = bj;
349202c68681SHong Zhang   merge->buf_ri        = buf_ri;
349302c68681SHong Zhang   merge->buf_rj        = buf_rj;
3494de0260b3SHong Zhang   merge->coi           = PETSC_NULL;
3495de0260b3SHong Zhang   merge->coj           = PETSC_NULL;
3496de0260b3SHong Zhang   merge->owners_co     = PETSC_NULL;
3497affca5deSHong Zhang 
3498affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
3499affca5deSHong Zhang   ierr = PetscObjectContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
3500affca5deSHong Zhang   ierr = PetscObjectContainerSetPointer(container,merge);CHKERRQ(ierr);
3501affca5deSHong Zhang   ierr = PetscObjectCompose((PetscObject)B_mpi,"MatMergeSeqsToMPI",(PetscObject)container);CHKERRQ(ierr);
3502affca5deSHong Zhang   *mpimat = B_mpi;
350338f152feSBarry Smith 
350438f152feSBarry Smith   ierr = PetscCommDestroy(&comm);CHKERRQ(ierr);
35053c2c1871SHong Zhang   ierr = PetscLogEventEnd(logkey_seqstompisym,seqmat,0,0,0);CHKERRQ(ierr);
3506e5f2cdd8SHong Zhang   PetscFunctionReturn(0);
3507e5f2cdd8SHong Zhang }
350825616d81SHong Zhang 
3509e462e02cSHong Zhang static PetscEvent logkey_seqstompi = 0;
351038f152feSBarry Smith #undef __FUNCT__
351138f152feSBarry Smith #define __FUNCT__ "MatMerge_SeqsToMPI"
3512be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPI(MPI_Comm comm,Mat seqmat,PetscInt m,PetscInt n,MatReuse scall,Mat *mpimat)
351355d1abb9SHong Zhang {
351455d1abb9SHong Zhang   PetscErrorCode   ierr;
351555d1abb9SHong Zhang 
351655d1abb9SHong Zhang   PetscFunctionBegin;
3517e462e02cSHong Zhang   if (!logkey_seqstompi) {
3518e462e02cSHong Zhang     ierr = PetscLogEventRegister(&logkey_seqstompi,"MatMerge_SeqsToMPI",MAT_COOKIE);
3519e462e02cSHong Zhang   }
3520e462e02cSHong Zhang   ierr = PetscLogEventBegin(logkey_seqstompi,seqmat,0,0,0);CHKERRQ(ierr);
352155d1abb9SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
352255d1abb9SHong Zhang     ierr = MatMerge_SeqsToMPISymbolic(comm,seqmat,m,n,mpimat);CHKERRQ(ierr);
352355d1abb9SHong Zhang   }
352455d1abb9SHong Zhang   ierr = MatMerge_SeqsToMPINumeric(seqmat,*mpimat);CHKERRQ(ierr);
3525e462e02cSHong Zhang   ierr = PetscLogEventEnd(logkey_seqstompi,seqmat,0,0,0);CHKERRQ(ierr);
352655d1abb9SHong Zhang   PetscFunctionReturn(0);
352755d1abb9SHong Zhang }
3528a61c8c0fSHong Zhang static PetscEvent logkey_getlocalmat = 0;
352925616d81SHong Zhang #undef __FUNCT__
353025616d81SHong Zhang #define __FUNCT__ "MatGetLocalMat"
353125616d81SHong Zhang /*@C
353232fba14fSHong Zhang      MatGetLocalMat - Creates a SeqAIJ matrix by taking all its local rows
353325616d81SHong Zhang 
353432fba14fSHong Zhang     Not Collective
353525616d81SHong Zhang 
353625616d81SHong Zhang    Input Parameters:
353725616d81SHong Zhang +    A - the matrix
353825616d81SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
353925616d81SHong Zhang 
354025616d81SHong Zhang    Output Parameter:
354125616d81SHong Zhang .    A_loc - the local sequential matrix generated
354225616d81SHong Zhang 
354325616d81SHong Zhang     Level: developer
354425616d81SHong Zhang 
354525616d81SHong Zhang @*/
3546be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalMat(Mat A,MatReuse scall,Mat *A_loc)
354725616d81SHong Zhang {
354825616d81SHong Zhang   PetscErrorCode  ierr;
354901b7ae99SHong Zhang   Mat_MPIAIJ      *mpimat=(Mat_MPIAIJ*)A->data;
355001b7ae99SHong Zhang   Mat_SeqAIJ      *mat,*a=(Mat_SeqAIJ*)(mpimat->A)->data,*b=(Mat_SeqAIJ*)(mpimat->B)->data;
355101b7ae99SHong Zhang   PetscInt        *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*cmap=mpimat->garray;
3552dea91ad1SHong Zhang   PetscScalar     *aa=a->a,*ba=b->a,*ca;
3553899cda47SBarry Smith   PetscInt        am=A->rmap.n,i,j,k,cstart=A->cmap.rstart;
35545a7d977cSHong Zhang   PetscInt        *ci,*cj,col,ncols_d,ncols_o,jo;
355525616d81SHong Zhang 
355625616d81SHong Zhang   PetscFunctionBegin;
3557e462e02cSHong Zhang   if (!logkey_getlocalmat) {
3558e462e02cSHong Zhang     ierr = PetscLogEventRegister(&logkey_getlocalmat,"MatGetLocalMat",MAT_COOKIE);
3559e462e02cSHong Zhang   }
3560e462e02cSHong Zhang   ierr = PetscLogEventBegin(logkey_getlocalmat,A,0,0,0);CHKERRQ(ierr);
356101b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3562dea91ad1SHong Zhang     ierr = PetscMalloc((1+am)*sizeof(PetscInt),&ci);CHKERRQ(ierr);
3563dea91ad1SHong Zhang     ci[0] = 0;
356401b7ae99SHong Zhang     for (i=0; i<am; i++){
3565dea91ad1SHong Zhang       ci[i+1] = ci[i] + (ai[i+1] - ai[i]) + (bi[i+1] - bi[i]);
356601b7ae99SHong Zhang     }
3567dea91ad1SHong Zhang     ierr = PetscMalloc((1+ci[am])*sizeof(PetscInt),&cj);CHKERRQ(ierr);
3568dea91ad1SHong Zhang     ierr = PetscMalloc((1+ci[am])*sizeof(PetscScalar),&ca);CHKERRQ(ierr);
3569dea91ad1SHong Zhang     k = 0;
357001b7ae99SHong Zhang     for (i=0; i<am; i++) {
35715a7d977cSHong Zhang       ncols_o = bi[i+1] - bi[i];
35725a7d977cSHong Zhang       ncols_d = ai[i+1] - ai[i];
357301b7ae99SHong Zhang       /* off-diagonal portion of A */
35745a7d977cSHong Zhang       for (jo=0; jo<ncols_o; jo++) {
35755a7d977cSHong Zhang         col = cmap[*bj];
35765a7d977cSHong Zhang         if (col >= cstart) break;
35775a7d977cSHong Zhang         cj[k]   = col; bj++;
35785a7d977cSHong Zhang         ca[k++] = *ba++;
35795a7d977cSHong Zhang       }
35805a7d977cSHong Zhang       /* diagonal portion of A */
35815a7d977cSHong Zhang       for (j=0; j<ncols_d; j++) {
35825a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
35835a7d977cSHong Zhang         ca[k++] = *aa++;
35845a7d977cSHong Zhang       }
35855a7d977cSHong Zhang       /* off-diagonal portion of A */
35865a7d977cSHong Zhang       for (j=jo; j<ncols_o; j++) {
35875a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
35885a7d977cSHong Zhang         ca[k++] = *ba++;
35895a7d977cSHong Zhang       }
359025616d81SHong Zhang     }
3591dea91ad1SHong Zhang     /* put together the new matrix */
3592899cda47SBarry Smith     ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,am,A->cmap.N,ci,cj,ca,A_loc);CHKERRQ(ierr);
3593dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
3594dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
3595dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ*)(*A_loc)->data;
3596e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
3597e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
3598dea91ad1SHong Zhang     mat->nonew   = 0;
35995a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX){
36005a7d977cSHong Zhang     mat=(Mat_SeqAIJ*)(*A_loc)->data;
36015a7d977cSHong Zhang     ci = mat->i; cj = mat->j; ca = mat->a;
36025a7d977cSHong Zhang     for (i=0; i<am; i++) {
36035a7d977cSHong Zhang       /* off-diagonal portion of A */
36045a7d977cSHong Zhang       ncols_o = bi[i+1] - bi[i];
36055a7d977cSHong Zhang       for (jo=0; jo<ncols_o; jo++) {
36065a7d977cSHong Zhang         col = cmap[*bj];
36075a7d977cSHong Zhang         if (col >= cstart) break;
3608f33d1a9aSHong Zhang         *ca++ = *ba++; bj++;
36095a7d977cSHong Zhang       }
36105a7d977cSHong Zhang       /* diagonal portion of A */
3611ecc9b87dSHong Zhang       ncols_d = ai[i+1] - ai[i];
3612ecc9b87dSHong Zhang       for (j=0; j<ncols_d; j++) *ca++ = *aa++;
36135a7d977cSHong Zhang       /* off-diagonal portion of A */
3614f33d1a9aSHong Zhang       for (j=jo; j<ncols_o; j++) {
3615f33d1a9aSHong Zhang         *ca++ = *ba++; bj++;
3616f33d1a9aSHong Zhang       }
36175a7d977cSHong Zhang     }
36185a7d977cSHong Zhang   } else {
36195a7d977cSHong Zhang     SETERRQ1(PETSC_ERR_ARG_WRONG,"Invalid MatReuse %d",(int)scall);
362025616d81SHong Zhang   }
362101b7ae99SHong Zhang 
3622e462e02cSHong Zhang   ierr = PetscLogEventEnd(logkey_getlocalmat,A,0,0,0);CHKERRQ(ierr);
362325616d81SHong Zhang   PetscFunctionReturn(0);
362425616d81SHong Zhang }
362525616d81SHong Zhang 
362632fba14fSHong Zhang static PetscEvent logkey_getlocalmatcondensed = 0;
362732fba14fSHong Zhang #undef __FUNCT__
362832fba14fSHong Zhang #define __FUNCT__ "MatGetLocalMatCondensed"
362932fba14fSHong Zhang /*@C
363032fba14fSHong Zhang      MatGetLocalMatCondensed - Creates a SeqAIJ matrix by taking all its local rows and NON-ZERO columns
363132fba14fSHong Zhang 
363232fba14fSHong Zhang     Not Collective
363332fba14fSHong Zhang 
363432fba14fSHong Zhang    Input Parameters:
363532fba14fSHong Zhang +    A - the matrix
363632fba14fSHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
363732fba14fSHong Zhang -    row, col - index sets of rows and columns to extract (or PETSC_NULL)
363832fba14fSHong Zhang 
363932fba14fSHong Zhang    Output Parameter:
364032fba14fSHong Zhang .    A_loc - the local sequential matrix generated
364132fba14fSHong Zhang 
364232fba14fSHong Zhang     Level: developer
364332fba14fSHong Zhang 
364432fba14fSHong Zhang @*/
3645be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc)
364632fba14fSHong Zhang {
364732fba14fSHong Zhang   Mat_MPIAIJ        *a=(Mat_MPIAIJ*)A->data;
364832fba14fSHong Zhang   PetscErrorCode    ierr;
364932fba14fSHong Zhang   PetscInt          i,start,end,ncols,nzA,nzB,*cmap,imark,*idx;
365032fba14fSHong Zhang   IS                isrowa,iscola;
365132fba14fSHong Zhang   Mat               *aloc;
365232fba14fSHong Zhang 
365332fba14fSHong Zhang   PetscFunctionBegin;
365432fba14fSHong Zhang   if (!logkey_getlocalmatcondensed) {
365532fba14fSHong Zhang     ierr = PetscLogEventRegister(&logkey_getlocalmatcondensed,"MatGetLocalMatCondensed",MAT_COOKIE);
365632fba14fSHong Zhang   }
365732fba14fSHong Zhang   ierr = PetscLogEventBegin(logkey_getlocalmatcondensed,A,0,0,0);CHKERRQ(ierr);
365832fba14fSHong Zhang   if (!row){
3659899cda47SBarry Smith     start = A->rmap.rstart; end = A->rmap.rend;
366032fba14fSHong Zhang     ierr = ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa);CHKERRQ(ierr);
366132fba14fSHong Zhang   } else {
366232fba14fSHong Zhang     isrowa = *row;
366332fba14fSHong Zhang   }
366432fba14fSHong Zhang   if (!col){
3665899cda47SBarry Smith     start = A->cmap.rstart;
366632fba14fSHong Zhang     cmap  = a->garray;
3667899cda47SBarry Smith     nzA   = a->A->cmap.n;
3668899cda47SBarry Smith     nzB   = a->B->cmap.n;
366932fba14fSHong Zhang     ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
367032fba14fSHong Zhang     ncols = 0;
367132fba14fSHong Zhang     for (i=0; i<nzB; i++) {
367232fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
367332fba14fSHong Zhang       else break;
367432fba14fSHong Zhang     }
367532fba14fSHong Zhang     imark = i;
367632fba14fSHong Zhang     for (i=0; i<nzA; i++) idx[ncols++] = start + i;
367732fba14fSHong Zhang     for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i];
367832fba14fSHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,&iscola);CHKERRQ(ierr);
367932fba14fSHong Zhang     ierr = PetscFree(idx);CHKERRQ(ierr);
368032fba14fSHong Zhang   } else {
368132fba14fSHong Zhang     iscola = *col;
368232fba14fSHong Zhang   }
368332fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX){
368432fba14fSHong Zhang     ierr = PetscMalloc(sizeof(Mat),&aloc);CHKERRQ(ierr);
368532fba14fSHong Zhang     aloc[0] = *A_loc;
368632fba14fSHong Zhang   }
368732fba14fSHong Zhang   ierr = MatGetSubMatrices(A,1,&isrowa,&iscola,scall,&aloc);CHKERRQ(ierr);
368832fba14fSHong Zhang   *A_loc = aloc[0];
368932fba14fSHong Zhang   ierr = PetscFree(aloc);CHKERRQ(ierr);
369032fba14fSHong Zhang   if (!row){
369132fba14fSHong Zhang     ierr = ISDestroy(isrowa);CHKERRQ(ierr);
369232fba14fSHong Zhang   }
369332fba14fSHong Zhang   if (!col){
369432fba14fSHong Zhang     ierr = ISDestroy(iscola);CHKERRQ(ierr);
369532fba14fSHong Zhang   }
369632fba14fSHong Zhang   ierr = PetscLogEventEnd(logkey_getlocalmatcondensed,A,0,0,0);CHKERRQ(ierr);
369732fba14fSHong Zhang   PetscFunctionReturn(0);
369832fba14fSHong Zhang }
369932fba14fSHong Zhang 
3700a61c8c0fSHong Zhang static PetscEvent logkey_GetBrowsOfAcols = 0;
370125616d81SHong Zhang #undef __FUNCT__
370225616d81SHong Zhang #define __FUNCT__ "MatGetBrowsOfAcols"
370325616d81SHong Zhang /*@C
370432fba14fSHong Zhang     MatGetBrowsOfAcols - Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
370525616d81SHong Zhang 
370625616d81SHong Zhang     Collective on Mat
370725616d81SHong Zhang 
370825616d81SHong Zhang    Input Parameters:
3709e240928fSHong Zhang +    A,B - the matrices in mpiaij format
371025616d81SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
371125616d81SHong Zhang -    rowb, colb - index sets of rows and columns of B to extract (or PETSC_NULL)
371225616d81SHong Zhang 
371325616d81SHong Zhang    Output Parameter:
371425616d81SHong Zhang +    rowb, colb - index sets of rows and columns of B to extract
3715899cda47SBarry Smith .    brstart - row index of B_seq from which next B->rmap.n rows are taken from B's local rows
371625616d81SHong Zhang -    B_seq - the sequential matrix generated
371725616d81SHong Zhang 
371825616d81SHong Zhang     Level: developer
371925616d81SHong Zhang 
372025616d81SHong Zhang @*/
3721be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetBrowsOfAcols(Mat A,Mat B,MatReuse scall,IS *rowb,IS *colb,PetscInt *brstart,Mat *B_seq)
372225616d81SHong Zhang {
3723899cda47SBarry Smith   Mat_MPIAIJ        *a=(Mat_MPIAIJ*)A->data;
372425616d81SHong Zhang   PetscErrorCode    ierr;
3725b1d57f15SBarry Smith   PetscInt          *idx,i,start,ncols,nzA,nzB,*cmap,imark;
372625616d81SHong Zhang   IS                isrowb,iscolb;
372725616d81SHong Zhang   Mat               *bseq;
372825616d81SHong Zhang 
372925616d81SHong Zhang   PetscFunctionBegin;
3730899cda47SBarry Smith   if (A->cmap.rstart != B->rmap.rstart || A->cmap.rend != B->rmap.rend){
3731899cda47SBarry Smith     SETERRQ4(PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap.rstart,A->cmap.rend,B->rmap.rstart,B->rmap.rend);
373225616d81SHong Zhang   }
3733e462e02cSHong Zhang   if (!logkey_GetBrowsOfAcols) {
3734e462e02cSHong Zhang     ierr = PetscLogEventRegister(&logkey_GetBrowsOfAcols,"MatGetBrowsOfAcols",MAT_COOKIE);
3735e462e02cSHong Zhang   }
3736e462e02cSHong Zhang   ierr = PetscLogEventBegin(logkey_GetBrowsOfAcols,A,B,0,0);CHKERRQ(ierr);
373725616d81SHong Zhang 
373825616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3739899cda47SBarry Smith     start = A->cmap.rstart;
374025616d81SHong Zhang     cmap  = a->garray;
3741899cda47SBarry Smith     nzA   = a->A->cmap.n;
3742899cda47SBarry Smith     nzB   = a->B->cmap.n;
3743b1d57f15SBarry Smith     ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
374425616d81SHong Zhang     ncols = 0;
37450390132cSHong Zhang     for (i=0; i<nzB; i++) {  /* row < local row index */
374625616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
374725616d81SHong Zhang       else break;
374825616d81SHong Zhang     }
374925616d81SHong Zhang     imark = i;
37500390132cSHong Zhang     for (i=0; i<nzA; i++) idx[ncols++] = start + i;  /* local rows */
37510390132cSHong Zhang     for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
375225616d81SHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,&isrowb);CHKERRQ(ierr);
375325616d81SHong Zhang     ierr = PetscFree(idx);CHKERRQ(ierr);
375425616d81SHong Zhang     *brstart = imark;
3755899cda47SBarry Smith     ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap.N,0,1,&iscolb);CHKERRQ(ierr);
375625616d81SHong Zhang   } else {
375725616d81SHong Zhang     if (!rowb || !colb) SETERRQ(PETSC_ERR_SUP,"IS rowb and colb must be provided for MAT_REUSE_MATRIX");
375825616d81SHong Zhang     isrowb = *rowb; iscolb = *colb;
375925616d81SHong Zhang     ierr = PetscMalloc(sizeof(Mat),&bseq);CHKERRQ(ierr);
376025616d81SHong Zhang     bseq[0] = *B_seq;
376125616d81SHong Zhang   }
376225616d81SHong Zhang   ierr = MatGetSubMatrices(B,1,&isrowb,&iscolb,scall,&bseq);CHKERRQ(ierr);
376325616d81SHong Zhang   *B_seq = bseq[0];
376425616d81SHong Zhang   ierr = PetscFree(bseq);CHKERRQ(ierr);
376525616d81SHong Zhang   if (!rowb){
376625616d81SHong Zhang     ierr = ISDestroy(isrowb);CHKERRQ(ierr);
376725616d81SHong Zhang   } else {
376825616d81SHong Zhang     *rowb = isrowb;
376925616d81SHong Zhang   }
377025616d81SHong Zhang   if (!colb){
377125616d81SHong Zhang     ierr = ISDestroy(iscolb);CHKERRQ(ierr);
377225616d81SHong Zhang   } else {
377325616d81SHong Zhang     *colb = iscolb;
377425616d81SHong Zhang   }
3775e462e02cSHong Zhang   ierr = PetscLogEventEnd(logkey_GetBrowsOfAcols,A,B,0,0);CHKERRQ(ierr);
377625616d81SHong Zhang   PetscFunctionReturn(0);
377725616d81SHong Zhang }
3778429d309bSHong Zhang 
3779a61c8c0fSHong Zhang static PetscEvent logkey_GetBrowsOfAocols = 0;
3780a61c8c0fSHong Zhang #undef __FUNCT__
3781a61c8c0fSHong Zhang #define __FUNCT__ "MatGetBrowsOfAoCols"
3782429d309bSHong Zhang /*@C
3783429d309bSHong Zhang     MatGetBrowsOfAoCols - Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns
378401b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
3785429d309bSHong Zhang 
3786429d309bSHong Zhang     Collective on Mat
3787429d309bSHong Zhang 
3788429d309bSHong Zhang    Input Parameters:
3789429d309bSHong Zhang +    A,B - the matrices in mpiaij format
379087025532SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
379187025532SHong Zhang .    startsj - starting point in B's sending and receiving j-arrays, saved for MAT_REUSE (or PETSC_NULL)
379287025532SHong Zhang -    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or PETSC_NULL)
3793429d309bSHong Zhang 
3794429d309bSHong Zhang    Output Parameter:
379587025532SHong Zhang +    B_oth - the sequential matrix generated
3796429d309bSHong Zhang 
3797429d309bSHong Zhang     Level: developer
3798429d309bSHong Zhang 
3799429d309bSHong Zhang @*/
3800be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetBrowsOfAoCols(Mat A,Mat B,MatReuse scall,PetscInt **startsj,PetscScalar **bufa_ptr,Mat *B_oth)
3801429d309bSHong Zhang {
3802a6b2eed2SHong Zhang   VecScatter_MPI_General *gen_to,*gen_from;
3803429d309bSHong Zhang   PetscErrorCode         ierr;
3804899cda47SBarry Smith   Mat_MPIAIJ             *a=(Mat_MPIAIJ*)A->data;
380587025532SHong Zhang   Mat_SeqAIJ             *b_oth;
3806a6b2eed2SHong Zhang   VecScatter             ctx=a->Mvctx;
3807a6b2eed2SHong Zhang   MPI_Comm               comm=ctx->comm;
380887025532SHong Zhang   PetscMPIInt            *rprocs,*sprocs,tag=ctx->tag,rank;
3809899cda47SBarry Smith   PetscInt               *rowlen,*bufj,*bufJ,ncols,aBn=a->B->cmap.n,row,*b_othi,*b_othj;
381087025532SHong Zhang   PetscScalar            *rvalues,*svalues,*b_otha,*bufa,*bufA;
3811d679ab29SBarry Smith   PetscInt               i,k,l,nrecvs,nsends,nrows,*srow,*rstarts,*rstartsj = 0,*sstarts,*sstartsj,len;
3812910ba992SMatthew Knepley   MPI_Request            *rwaits = PETSC_NULL,*swaits = PETSC_NULL;
381387025532SHong Zhang   MPI_Status             *sstatus,rstatus;
3814ba8c8a56SBarry Smith   PetscInt               *cols;
3815ba8c8a56SBarry Smith   PetscScalar            *vals;
381613f74950SBarry Smith   PetscMPIInt            j;
3817429d309bSHong Zhang 
3818429d309bSHong Zhang   PetscFunctionBegin;
3819899cda47SBarry Smith   if (A->cmap.rstart != B->rmap.rstart || A->cmap.rend != B->rmap.rend){
3820899cda47SBarry Smith     SETERRQ4(PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%d, %d) != (%d,%d)",A->cmap.rstart,A->cmap.rend,B->rmap.rstart,B->rmap.rend);
3821429d309bSHong Zhang   }
3822429d309bSHong Zhang   if (!logkey_GetBrowsOfAocols) {
38231677a5d7SHong Zhang     ierr = PetscLogEventRegister(&logkey_GetBrowsOfAocols,"MatGetBrAoCol",MAT_COOKIE);
3824429d309bSHong Zhang   }
3825429d309bSHong Zhang   ierr = PetscLogEventBegin(logkey_GetBrowsOfAocols,A,B,0,0);CHKERRQ(ierr);
3826a6b2eed2SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
3827a6b2eed2SHong Zhang 
3828a6b2eed2SHong Zhang   gen_to   = (VecScatter_MPI_General*)ctx->todata;
3829a6b2eed2SHong Zhang   gen_from = (VecScatter_MPI_General*)ctx->fromdata;
3830a6b2eed2SHong Zhang   rvalues  = gen_from->values; /* holds the length of sending row */
3831a6b2eed2SHong Zhang   svalues  = gen_to->values;   /* holds the length of receiving row */
3832a6b2eed2SHong Zhang   nrecvs   = gen_from->n;
3833a6b2eed2SHong Zhang   nsends   = gen_to->n;
3834d7ee0231SBarry Smith 
3835d7ee0231SBarry Smith   ierr = PetscMalloc2(nrecvs,MPI_Request,&rwaits,nsends,MPI_Request,&swaits);CHKERRQ(ierr);
3836a6b2eed2SHong Zhang   srow     = gen_to->indices;   /* local row index to be sent */
3837a6b2eed2SHong Zhang   rstarts  = gen_from->starts;
3838a6b2eed2SHong Zhang   sstarts  = gen_to->starts;
3839a6b2eed2SHong Zhang   rprocs   = gen_from->procs;
3840a6b2eed2SHong Zhang   sprocs   = gen_to->procs;
3841a6b2eed2SHong Zhang   sstatus  = gen_to->sstatus;
3842429d309bSHong Zhang 
3843dea91ad1SHong Zhang   if (!startsj || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
3844429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3845a6b2eed2SHong Zhang     /* i-array */
3846a6b2eed2SHong Zhang     /*---------*/
3847a6b2eed2SHong Zhang     /*  post receives */
3848a6b2eed2SHong Zhang     for (i=0; i<nrecvs; i++){
3849a6b2eed2SHong Zhang       rowlen = (PetscInt*)rvalues + rstarts[i];
385087025532SHong Zhang       nrows = rstarts[i+1]-rstarts[i];
385187025532SHong Zhang       ierr = MPI_Irecv(rowlen,nrows,MPIU_INT,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
3852429d309bSHong Zhang     }
3853a6b2eed2SHong Zhang 
3854a6b2eed2SHong Zhang     /* pack the outgoing message */
385587025532SHong Zhang     ierr = PetscMalloc((nsends+nrecvs+3)*sizeof(PetscInt),&sstartsj);CHKERRQ(ierr);
3856a6b2eed2SHong Zhang     rstartsj = sstartsj + nsends +1;
3857a6b2eed2SHong Zhang     sstartsj[0] = 0;  rstartsj[0] = 0;
3858a6b2eed2SHong Zhang     len = 0; /* total length of j or a array to be sent */
3859a6b2eed2SHong Zhang     k = 0;
3860a6b2eed2SHong Zhang     for (i=0; i<nsends; i++){
3861a6b2eed2SHong Zhang       rowlen = (PetscInt*)svalues + sstarts[i];
386287025532SHong Zhang       nrows = sstarts[i+1]-sstarts[i]; /* num of rows */
386387025532SHong Zhang       for (j=0; j<nrows; j++) {
3864899cda47SBarry Smith         row = srow[k] + B->rmap.range[rank]; /* global row idx */
3865ba8c8a56SBarry Smith         ierr = MatGetRow_MPIAIJ(B,row,&rowlen[j],PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); /* rowlength */
3866a6b2eed2SHong Zhang         len += rowlen[j];
3867ba8c8a56SBarry Smith         ierr = MatRestoreRow_MPIAIJ(B,row,&ncols,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr);
3868a6b2eed2SHong Zhang         k++;
3869429d309bSHong Zhang       }
387087025532SHong Zhang       ierr = MPI_Isend(rowlen,nrows,MPIU_INT,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
3871dea91ad1SHong Zhang        sstartsj[i+1] = len;  /* starting point of (i+1)-th outgoing msg in bufj and bufa */
3872429d309bSHong Zhang     }
387387025532SHong Zhang     /* recvs and sends of i-array are completed */
387487025532SHong Zhang     i = nrecvs;
387587025532SHong Zhang     while (i--) {
387687025532SHong Zhang       ierr = MPI_Waitany(nrecvs,rwaits,&j,&rstatus);CHKERRQ(ierr);
387787025532SHong Zhang     }
38780c468ba9SBarry Smith     if (nsends) {ierr = MPI_Waitall(nsends,swaits,sstatus);CHKERRQ(ierr);}
3879a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
3880a6b2eed2SHong Zhang     ierr = PetscMalloc((len+1)*sizeof(PetscInt),&bufj);CHKERRQ(ierr);
3881a6b2eed2SHong Zhang     ierr = PetscMalloc((len+1)*sizeof(PetscScalar),&bufa);CHKERRQ(ierr);
3882a6b2eed2SHong Zhang 
388387025532SHong Zhang     /* create i-array of B_oth */
388487025532SHong Zhang     ierr = PetscMalloc((aBn+2)*sizeof(PetscInt),&b_othi);CHKERRQ(ierr);
388587025532SHong Zhang     b_othi[0] = 0;
3886a6b2eed2SHong Zhang     len = 0; /* total length of j or a array to be received */
3887a6b2eed2SHong Zhang     k = 0;
3888a6b2eed2SHong Zhang     for (i=0; i<nrecvs; i++){
3889a6b2eed2SHong Zhang       rowlen = (PetscInt*)rvalues + rstarts[i];
389087025532SHong Zhang       nrows = rstarts[i+1]-rstarts[i];
389187025532SHong Zhang       for (j=0; j<nrows; j++) {
389287025532SHong Zhang         b_othi[k+1] = b_othi[k] + rowlen[j];
3893a6b2eed2SHong Zhang         len += rowlen[j]; k++;
3894a6b2eed2SHong Zhang       }
3895dea91ad1SHong Zhang       rstartsj[i+1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
3896a6b2eed2SHong Zhang     }
3897a6b2eed2SHong Zhang 
389887025532SHong Zhang     /* allocate space for j and a arrrays of B_oth */
389987025532SHong Zhang     ierr = PetscMalloc((b_othi[aBn]+1)*sizeof(PetscInt),&b_othj);CHKERRQ(ierr);
390087025532SHong Zhang     ierr = PetscMalloc((b_othi[aBn]+1)*sizeof(PetscScalar),&b_otha);CHKERRQ(ierr);
3901a6b2eed2SHong Zhang 
390287025532SHong Zhang     /* j-array */
390387025532SHong Zhang     /*---------*/
3904a6b2eed2SHong Zhang     /*  post receives of j-array */
3905a6b2eed2SHong Zhang     for (i=0; i<nrecvs; i++){
390687025532SHong Zhang       nrows = rstartsj[i+1]-rstartsj[i]; /* length of the msg received */
390787025532SHong Zhang       ierr = MPI_Irecv(b_othj+rstartsj[i],nrows,MPIU_INT,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
3908a6b2eed2SHong Zhang     }
3909a6b2eed2SHong Zhang     k = 0;
3910a6b2eed2SHong Zhang     for (i=0; i<nsends; i++){
391187025532SHong Zhang       nrows = sstarts[i+1]-sstarts[i]; /* num of rows */
3912a6b2eed2SHong Zhang       bufJ = bufj+sstartsj[i];
391387025532SHong Zhang       for (j=0; j<nrows; j++) {
3914899cda47SBarry Smith         row  = srow[k++] + B->rmap.range[rank]; /* global row idx */
3915ba8c8a56SBarry Smith         ierr = MatGetRow_MPIAIJ(B,row,&ncols,&cols,PETSC_NULL);CHKERRQ(ierr);
3916a6b2eed2SHong Zhang         for (l=0; l<ncols; l++){
3917a6b2eed2SHong Zhang           *bufJ++ = cols[l];
391887025532SHong Zhang         }
3919ba8c8a56SBarry Smith         ierr = MatRestoreRow_MPIAIJ(B,row,&ncols,&cols,PETSC_NULL);CHKERRQ(ierr);
392087025532SHong Zhang       }
392187025532SHong Zhang       ierr = MPI_Isend(bufj+sstartsj[i],sstartsj[i+1]-sstartsj[i],MPIU_INT,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
392287025532SHong Zhang     }
392387025532SHong Zhang 
392487025532SHong Zhang     /* recvs and sends of j-array are completed */
392587025532SHong Zhang     i = nrecvs;
392687025532SHong Zhang     while (i--) {
392787025532SHong Zhang       ierr = MPI_Waitany(nrecvs,rwaits,&j,&rstatus);CHKERRQ(ierr);
392887025532SHong Zhang     }
39290c468ba9SBarry Smith     if (nsends) {ierr = MPI_Waitall(nsends,swaits,sstatus);CHKERRQ(ierr);}
393087025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX){
393187025532SHong Zhang     sstartsj = *startsj;
393287025532SHong Zhang     rstartsj = sstartsj + nsends +1;
393387025532SHong Zhang     bufa     = *bufa_ptr;
393487025532SHong Zhang     b_oth    = (Mat_SeqAIJ*)(*B_oth)->data;
393587025532SHong Zhang     b_otha   = b_oth->a;
393687025532SHong Zhang   } else {
393787025532SHong Zhang     SETERRQ(PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not posses an object container");
393887025532SHong Zhang   }
393987025532SHong Zhang 
394087025532SHong Zhang   /* a-array */
394187025532SHong Zhang   /*---------*/
394287025532SHong Zhang   /*  post receives of a-array */
394387025532SHong Zhang   for (i=0; i<nrecvs; i++){
394487025532SHong Zhang     nrows = rstartsj[i+1]-rstartsj[i]; /* length of the msg received */
394587025532SHong Zhang     ierr = MPI_Irecv(b_otha+rstartsj[i],nrows,MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
394687025532SHong Zhang   }
394787025532SHong Zhang   k = 0;
394887025532SHong Zhang   for (i=0; i<nsends; i++){
394987025532SHong Zhang     nrows = sstarts[i+1]-sstarts[i];
395087025532SHong Zhang     bufA = bufa+sstartsj[i];
395187025532SHong Zhang     for (j=0; j<nrows; j++) {
3952899cda47SBarry Smith       row  = srow[k++] + B->rmap.range[rank]; /* global row idx */
3953ba8c8a56SBarry Smith       ierr = MatGetRow_MPIAIJ(B,row,&ncols,PETSC_NULL,&vals);CHKERRQ(ierr);
395487025532SHong Zhang       for (l=0; l<ncols; l++){
3955a6b2eed2SHong Zhang         *bufA++ = vals[l];
3956a6b2eed2SHong Zhang       }
3957ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIAIJ(B,row,&ncols,PETSC_NULL,&vals);CHKERRQ(ierr);
395887025532SHong Zhang 
3959a6b2eed2SHong Zhang     }
396087025532SHong Zhang     ierr = MPI_Isend(bufa+sstartsj[i],sstartsj[i+1]-sstartsj[i],MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
3961a6b2eed2SHong Zhang   }
396287025532SHong Zhang   /* recvs and sends of a-array are completed */
396387025532SHong Zhang   i = nrecvs;
396487025532SHong Zhang   while (i--) {
396587025532SHong Zhang     ierr = MPI_Waitany(nrecvs,rwaits,&j,&rstatus);CHKERRQ(ierr);
396687025532SHong Zhang   }
39670c468ba9SBarry Smith   if (nsends) {ierr = MPI_Waitall(nsends,swaits,sstatus);CHKERRQ(ierr);}
3968d7ee0231SBarry Smith   ierr = PetscFree2(rwaits,swaits);CHKERRQ(ierr);
3969a6b2eed2SHong Zhang 
397087025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3971a6b2eed2SHong Zhang     /* put together the new matrix */
3972899cda47SBarry Smith     ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,aBn,B->cmap.N,b_othi,b_othj,b_otha,B_oth);CHKERRQ(ierr);
3973a6b2eed2SHong Zhang 
3974a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
3975a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
397687025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
3977e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
3978e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
397987025532SHong Zhang     b_oth->nonew   = 0;
3980a6b2eed2SHong Zhang 
3981a6b2eed2SHong Zhang     ierr = PetscFree(bufj);CHKERRQ(ierr);
3982dea91ad1SHong Zhang     if (!startsj || !bufa_ptr){
3983dea91ad1SHong Zhang       ierr = PetscFree(sstartsj);CHKERRQ(ierr);
3984dea91ad1SHong Zhang       ierr = PetscFree(bufa_ptr);CHKERRQ(ierr);
3985dea91ad1SHong Zhang     } else {
398687025532SHong Zhang       *startsj  = sstartsj;
398787025532SHong Zhang       *bufa_ptr = bufa;
398887025532SHong Zhang     }
3989dea91ad1SHong Zhang   }
3990429d309bSHong Zhang   ierr = PetscLogEventEnd(logkey_GetBrowsOfAocols,A,B,0,0);CHKERRQ(ierr);
3991a6b2eed2SHong Zhang 
3992429d309bSHong Zhang   PetscFunctionReturn(0);
3993429d309bSHong Zhang }
3994ccd8e176SBarry Smith 
399543eb5e2fSMatthew Knepley #undef __FUNCT__
399643eb5e2fSMatthew Knepley #define __FUNCT__ "MatGetCommunicationStructs"
399743eb5e2fSMatthew Knepley /*@C
399843eb5e2fSMatthew Knepley   MatGetCommunicationStructs - Provides access to the communication structures used in matrix-vector multiplication.
399943eb5e2fSMatthew Knepley 
400043eb5e2fSMatthew Knepley   Not Collective
400143eb5e2fSMatthew Knepley 
400243eb5e2fSMatthew Knepley   Input Parameters:
400343eb5e2fSMatthew Knepley . A - The matrix in mpiaij format
400443eb5e2fSMatthew Knepley 
400543eb5e2fSMatthew Knepley   Output Parameter:
400643eb5e2fSMatthew Knepley + lvec - The local vector holding off-process values from the argument to a matrix-vector product
400743eb5e2fSMatthew Knepley . colmap - A map from global column index to local index into lvec
400843eb5e2fSMatthew Knepley - multScatter - A scatter from the argument of a matrix-vector product to lvec
400943eb5e2fSMatthew Knepley 
401043eb5e2fSMatthew Knepley   Level: developer
401143eb5e2fSMatthew Knepley 
401243eb5e2fSMatthew Knepley @*/
401343eb5e2fSMatthew Knepley #if defined (PETSC_USE_CTABLE)
401443eb5e2fSMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatGetCommunicationStructs(Mat A, Vec *lvec, PetscTable *colmap, VecScatter *multScatter)
401543eb5e2fSMatthew Knepley #else
401643eb5e2fSMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatGetCommunicationStructs(Mat A, Vec *lvec, PetscInt *colmap[], VecScatter *multScatter)
401743eb5e2fSMatthew Knepley #endif
401843eb5e2fSMatthew Knepley {
401943eb5e2fSMatthew Knepley   Mat_MPIAIJ *a;
402043eb5e2fSMatthew Knepley 
402143eb5e2fSMatthew Knepley   PetscFunctionBegin;
402243eb5e2fSMatthew Knepley   PetscValidHeaderSpecific(A, MAT_COOKIE, 1);
402343eb5e2fSMatthew Knepley   PetscValidPointer(lvec, 2)
402443eb5e2fSMatthew Knepley   PetscValidPointer(colmap, 3)
402543eb5e2fSMatthew Knepley   PetscValidPointer(multScatter, 4)
402643eb5e2fSMatthew Knepley   a = (Mat_MPIAIJ *) A->data;
402743eb5e2fSMatthew Knepley   if (lvec) *lvec = a->lvec;
402843eb5e2fSMatthew Knepley   if (colmap) *colmap = a->colmap;
402943eb5e2fSMatthew Knepley   if (multScatter) *multScatter = a->Mvctx;
403043eb5e2fSMatthew Knepley   PetscFunctionReturn(0);
403143eb5e2fSMatthew Knepley }
403243eb5e2fSMatthew Knepley 
403317667f90SBarry Smith EXTERN_C_BEGIN
403417667f90SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIAIJ_MPICRL(Mat,MatType,MatReuse,Mat*);
403517667f90SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIAIJ_MPICSRPERM(Mat,MatType,MatReuse,Mat*);
403617667f90SBarry Smith EXTERN_C_END
403717667f90SBarry Smith 
4038ccd8e176SBarry Smith /*MC
4039ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
4040ccd8e176SBarry Smith 
4041ccd8e176SBarry Smith    Options Database Keys:
4042ccd8e176SBarry Smith . -mat_type mpiaij - sets the matrix type to "mpiaij" during a call to MatSetFromOptions()
4043ccd8e176SBarry Smith 
4044ccd8e176SBarry Smith   Level: beginner
4045ccd8e176SBarry Smith 
4046ccd8e176SBarry Smith .seealso: MatCreateMPIAIJ
4047ccd8e176SBarry Smith M*/
4048ccd8e176SBarry Smith 
4049ccd8e176SBarry Smith EXTERN_C_BEGIN
4050ccd8e176SBarry Smith #undef __FUNCT__
4051ccd8e176SBarry Smith #define __FUNCT__ "MatCreate_MPIAIJ"
4052be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIAIJ(Mat B)
4053ccd8e176SBarry Smith {
4054ccd8e176SBarry Smith   Mat_MPIAIJ     *b;
4055ccd8e176SBarry Smith   PetscErrorCode ierr;
4056ccd8e176SBarry Smith   PetscMPIInt    size;
4057ccd8e176SBarry Smith 
4058ccd8e176SBarry Smith   PetscFunctionBegin;
4059ccd8e176SBarry Smith   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
4060ccd8e176SBarry Smith 
4061ccd8e176SBarry Smith   ierr            = PetscNew(Mat_MPIAIJ,&b);CHKERRQ(ierr);
4062ccd8e176SBarry Smith   B->data         = (void*)b;
4063ccd8e176SBarry Smith   ierr            = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
4064ccd8e176SBarry Smith   B->factor       = 0;
4065899cda47SBarry Smith   B->rmap.bs      = 1;
4066ccd8e176SBarry Smith   B->assembled    = PETSC_FALSE;
4067ccd8e176SBarry Smith   B->mapping      = 0;
4068ccd8e176SBarry Smith 
4069ccd8e176SBarry Smith   B->insertmode      = NOT_SET_VALUES;
4070ccd8e176SBarry Smith   b->size            = size;
4071ccd8e176SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
4072ccd8e176SBarry Smith 
4073ccd8e176SBarry Smith   /* build cache for off array entries formed */
4074ccd8e176SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
4075ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
4076ccd8e176SBarry Smith   b->colmap      = 0;
4077ccd8e176SBarry Smith   b->garray      = 0;
4078ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
4079ccd8e176SBarry Smith 
4080ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
4081ccd8e176SBarry Smith   b->lvec      = PETSC_NULL;
4082ccd8e176SBarry Smith   b->Mvctx     = PETSC_NULL;
4083ccd8e176SBarry Smith 
4084ccd8e176SBarry Smith   /* stuff for MatGetRow() */
4085ccd8e176SBarry Smith   b->rowindices   = 0;
4086ccd8e176SBarry Smith   b->rowvalues    = 0;
4087ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
4088ccd8e176SBarry Smith 
4089ccd8e176SBarry Smith 
4090ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
4091ccd8e176SBarry Smith                                      "MatStoreValues_MPIAIJ",
4092ccd8e176SBarry Smith                                      MatStoreValues_MPIAIJ);CHKERRQ(ierr);
4093ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
4094ccd8e176SBarry Smith                                      "MatRetrieveValues_MPIAIJ",
4095ccd8e176SBarry Smith                                      MatRetrieveValues_MPIAIJ);CHKERRQ(ierr);
4096ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
4097ccd8e176SBarry Smith 				     "MatGetDiagonalBlock_MPIAIJ",
4098ccd8e176SBarry Smith                                      MatGetDiagonalBlock_MPIAIJ);CHKERRQ(ierr);
4099ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatIsTranspose_C",
4100ccd8e176SBarry Smith 				     "MatIsTranspose_MPIAIJ",
4101ccd8e176SBarry Smith 				     MatIsTranspose_MPIAIJ);CHKERRQ(ierr);
4102ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIAIJSetPreallocation_C",
4103ccd8e176SBarry Smith 				     "MatMPIAIJSetPreallocation_MPIAIJ",
4104ccd8e176SBarry Smith 				     MatMPIAIJSetPreallocation_MPIAIJ);CHKERRQ(ierr);
4105ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIAIJSetPreallocationCSR_C",
4106ccd8e176SBarry Smith 				     "MatMPIAIJSetPreallocationCSR_MPIAIJ",
4107ccd8e176SBarry Smith 				     MatMPIAIJSetPreallocationCSR_MPIAIJ);CHKERRQ(ierr);
4108ccd8e176SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
4109ccd8e176SBarry Smith 				     "MatDiagonalScaleLocal_MPIAIJ",
4110ccd8e176SBarry Smith 				     MatDiagonalScaleLocal_MPIAIJ);CHKERRQ(ierr);
411117667f90SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpiaij_mpicsrperm_C",
411217667f90SBarry Smith                                      "MatConvert_MPIAIJ_MPICSRPERM",
411317667f90SBarry Smith                                       MatConvert_MPIAIJ_MPICSRPERM);CHKERRQ(ierr);
411417667f90SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpiaij_mpicrl_C",
411517667f90SBarry Smith                                      "MatConvert_MPIAIJ_MPICRL",
411617667f90SBarry Smith                                       MatConvert_MPIAIJ_MPICRL);CHKERRQ(ierr);
411717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIAIJ);CHKERRQ(ierr);
4118ccd8e176SBarry Smith   PetscFunctionReturn(0);
4119ccd8e176SBarry Smith }
4120ccd8e176SBarry Smith EXTERN_C_END
412181824310SBarry Smith 
412203bfb495SBarry Smith #undef __FUNCT__
412303bfb495SBarry Smith #define __FUNCT__ "MatCreateMPIAIJWithSplitArrays"
412403bfb495SBarry Smith /*@C
412503bfb495SBarry Smith      MatCreateMPIAIJWithSplitArrays - creates a MPI AIJ matrix using arrays that contain the "diagonal"
412603bfb495SBarry Smith          and "off-diagonal" part of the matrix in CSR format.
412703bfb495SBarry Smith 
412803bfb495SBarry Smith    Collective on MPI_Comm
412903bfb495SBarry Smith 
413003bfb495SBarry Smith    Input Parameters:
413103bfb495SBarry Smith +  comm - MPI communicator
413203bfb495SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
413303bfb495SBarry Smith .  n - This value should be the same as the local size used in creating the
413403bfb495SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
413503bfb495SBarry Smith        calculated if N is given) For square matrices n is almost always m.
413603bfb495SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
413703bfb495SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
413803bfb495SBarry Smith .   i - row indices for "diagonal" portion of matrix
413903bfb495SBarry Smith .   j - column indices
414003bfb495SBarry Smith .   a - matrix values
414103bfb495SBarry Smith .   oi - row indices for "off-diagonal" portion of matrix
414203bfb495SBarry Smith .   oj - column indices
414303bfb495SBarry Smith -   oa - matrix values
414403bfb495SBarry Smith 
414503bfb495SBarry Smith    Output Parameter:
414603bfb495SBarry Smith .   mat - the matrix
414703bfb495SBarry Smith 
414803bfb495SBarry Smith    Level: advanced
414903bfb495SBarry Smith 
415003bfb495SBarry Smith    Notes:
415103bfb495SBarry Smith        The i, j, and a arrays ARE NOT copied by this routine into the internal format used by PETSc.
415203bfb495SBarry Smith 
415303bfb495SBarry Smith        The i and j indices are 0 based
415403bfb495SBarry Smith 
415503bfb495SBarry Smith        See MatCreateMPIAIJ() for the definition of "diagonal" and "off-diagonal" portion of the matrix
415603bfb495SBarry Smith 
415703bfb495SBarry Smith 
415803bfb495SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
415903bfb495SBarry Smith 
416003bfb495SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
4161*8d7a6e47SBarry Smith           MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithArrays()
416203bfb495SBarry Smith @*/
4163*8d7a6e47SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJWithSplitArrays(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt i[],PetscInt j[],PetscScalar a[],
416403bfb495SBarry Smith 								PetscInt oi[], PetscInt oj[],PetscScalar oa[],Mat *mat)
416503bfb495SBarry Smith {
416603bfb495SBarry Smith   PetscErrorCode ierr;
416703bfb495SBarry Smith   Mat_MPIAIJ     *maij;
416803bfb495SBarry Smith 
416903bfb495SBarry Smith  PetscFunctionBegin;
417003bfb495SBarry Smith   if (m < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
417103bfb495SBarry Smith   if (i[0]) {
417203bfb495SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
417303bfb495SBarry Smith   }
417403bfb495SBarry Smith   if (oi[0]) {
417503bfb495SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"oi (row indices) must start with 0");
417603bfb495SBarry Smith   }
417703bfb495SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
417803bfb495SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
417903bfb495SBarry Smith   ierr = MatSetType(*mat,MATMPIAIJ);CHKERRQ(ierr);
418003bfb495SBarry Smith   maij = (Mat_MPIAIJ*) (*mat)->data;
4181*8d7a6e47SBarry Smith   maij->donotstash     = PETSC_TRUE;
4182*8d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
418303bfb495SBarry Smith 
418403bfb495SBarry Smith   (*mat)->rmap.bs = (*mat)->cmap.bs = 1;
418503bfb495SBarry Smith   ierr = PetscMapInitialize((*mat)->comm,&(*mat)->rmap);CHKERRQ(ierr);
418603bfb495SBarry Smith   ierr = PetscMapInitialize((*mat)->comm,&(*mat)->cmap);CHKERRQ(ierr);
418703bfb495SBarry Smith 
418803bfb495SBarry Smith   ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,m,n,i,j,a,&maij->A);CHKERRQ(ierr);
418903bfb495SBarry Smith   ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,m,(*mat)->cmap.N,oi,oj,oa,&maij->B);CHKERRQ(ierr);
419003bfb495SBarry Smith 
4191*8d7a6e47SBarry Smith   ierr = MatAssemblyBegin(maij->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4192*8d7a6e47SBarry Smith   ierr = MatAssemblyEnd(maij->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4193*8d7a6e47SBarry Smith   ierr = MatAssemblyBegin(maij->B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4194*8d7a6e47SBarry Smith   ierr = MatAssemblyEnd(maij->B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4195*8d7a6e47SBarry Smith 
419603bfb495SBarry Smith   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
419703bfb495SBarry Smith   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
419803bfb495SBarry Smith   PetscFunctionReturn(0);
419903bfb495SBarry Smith }
420003bfb495SBarry Smith 
420181824310SBarry Smith /*
420281824310SBarry Smith     Special version for direct calls from Fortran
420381824310SBarry Smith */
420481824310SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
420581824310SBarry Smith #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
420681824310SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
420781824310SBarry Smith #define matsetvaluesmpiaij_ matsetvaluesmpiaij
420881824310SBarry Smith #endif
420981824310SBarry Smith 
421081824310SBarry Smith /* Change these macros so can be used in void function */
421181824310SBarry Smith #undef CHKERRQ
421281824310SBarry Smith #define CHKERRQ(ierr) CHKERRABORT(mat->comm,ierr)
421381824310SBarry Smith #undef SETERRQ2
421481824310SBarry Smith #define SETERRQ2(ierr,b,c,d) CHKERRABORT(mat->comm,ierr)
421581824310SBarry Smith #undef SETERRQ
421681824310SBarry Smith #define SETERRQ(ierr,b) CHKERRABORT(mat->comm,ierr)
421781824310SBarry Smith 
421881824310SBarry Smith EXTERN_C_BEGIN
421981824310SBarry Smith #undef __FUNCT__
422081824310SBarry Smith #define __FUNCT__ "matsetvaluesmpiaij_"
42211f6cc5b2SSatish Balay void PETSC_STDCALL matsetvaluesmpiaij_(Mat *mmat,PetscInt *mm,const PetscInt im[],PetscInt *mn,const PetscInt in[],const PetscScalar v[],InsertMode *maddv,PetscErrorCode *_ierr)
422281824310SBarry Smith {
422381824310SBarry Smith   Mat            mat = *mmat;
422481824310SBarry Smith   PetscInt       m = *mm, n = *mn;
422581824310SBarry Smith   InsertMode     addv = *maddv;
422681824310SBarry Smith   Mat_MPIAIJ     *aij = (Mat_MPIAIJ*)mat->data;
422781824310SBarry Smith   PetscScalar    value;
422881824310SBarry Smith   PetscErrorCode ierr;
4229899cda47SBarry Smith 
423081824310SBarry Smith   MatPreallocated(mat);
423181824310SBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
423281824310SBarry Smith     mat->insertmode = addv;
423381824310SBarry Smith   }
423481824310SBarry Smith #if defined(PETSC_USE_DEBUG)
423581824310SBarry Smith   else if (mat->insertmode != addv) {
423681824310SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
423781824310SBarry Smith   }
423881824310SBarry Smith #endif
423981824310SBarry Smith   {
4240899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend;
4241899cda47SBarry Smith   PetscInt       cstart = mat->cmap.rstart,cend = mat->cmap.rend,row,col;
424281824310SBarry Smith   PetscTruth     roworiented = aij->roworiented;
424381824310SBarry Smith 
424481824310SBarry Smith   /* Some Variables required in the macro */
424581824310SBarry Smith   Mat            A = aij->A;
424681824310SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
424781824310SBarry Smith   PetscInt       *aimax = a->imax,*ai = a->i,*ailen = a->ilen,*aj = a->j;
424881824310SBarry Smith   PetscScalar    *aa = a->a;
424981824310SBarry Smith   PetscTruth     ignorezeroentries = (((a->ignorezeroentries)&&(addv==ADD_VALUES))?PETSC_TRUE:PETSC_FALSE);
425081824310SBarry Smith   Mat            B = aij->B;
425181824310SBarry Smith   Mat_SeqAIJ     *b = (Mat_SeqAIJ*)B->data;
4252899cda47SBarry Smith   PetscInt       *bimax = b->imax,*bi = b->i,*bilen = b->ilen,*bj = b->j,bm = aij->B->rmap.n,am = aij->A->rmap.n;
425381824310SBarry Smith   PetscScalar    *ba = b->a;
425481824310SBarry Smith 
425581824310SBarry Smith   PetscInt       *rp1,*rp2,ii,nrow1,nrow2,_i,rmax1,rmax2,N,low1,high1,low2,high2,t,lastcol1,lastcol2;
425681824310SBarry Smith   PetscInt       nonew = a->nonew;
425781824310SBarry Smith   PetscScalar    *ap1,*ap2;
425881824310SBarry Smith 
425981824310SBarry Smith   PetscFunctionBegin;
426081824310SBarry Smith   for (i=0; i<m; i++) {
426181824310SBarry Smith     if (im[i] < 0) continue;
426281824310SBarry Smith #if defined(PETSC_USE_DEBUG)
4263899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
426481824310SBarry Smith #endif
426581824310SBarry Smith     if (im[i] >= rstart && im[i] < rend) {
426681824310SBarry Smith       row      = im[i] - rstart;
426781824310SBarry Smith       lastcol1 = -1;
426881824310SBarry Smith       rp1      = aj + ai[row];
426981824310SBarry Smith       ap1      = aa + ai[row];
427081824310SBarry Smith       rmax1    = aimax[row];
427181824310SBarry Smith       nrow1    = ailen[row];
427281824310SBarry Smith       low1     = 0;
427381824310SBarry Smith       high1    = nrow1;
427481824310SBarry Smith       lastcol2 = -1;
427581824310SBarry Smith       rp2      = bj + bi[row];
427681824310SBarry Smith       ap2      = ba + bi[row];
427781824310SBarry Smith       rmax2    = bimax[row];
427881824310SBarry Smith       nrow2    = bilen[row];
427981824310SBarry Smith       low2     = 0;
428081824310SBarry Smith       high2    = nrow2;
428181824310SBarry Smith 
428281824310SBarry Smith       for (j=0; j<n; j++) {
428381824310SBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
428481824310SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue;
428581824310SBarry Smith         if (in[j] >= cstart && in[j] < cend){
428681824310SBarry Smith           col = in[j] - cstart;
428781824310SBarry Smith           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
428881824310SBarry Smith         } else if (in[j] < 0) continue;
428981824310SBarry Smith #if defined(PETSC_USE_DEBUG)
4290899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
429181824310SBarry Smith #endif
429281824310SBarry Smith         else {
429381824310SBarry Smith           if (mat->was_assembled) {
429481824310SBarry Smith             if (!aij->colmap) {
429581824310SBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
429681824310SBarry Smith             }
429781824310SBarry Smith #if defined (PETSC_USE_CTABLE)
429881824310SBarry Smith             ierr = PetscTableFind(aij->colmap,in[j]+1,&col);CHKERRQ(ierr);
429981824310SBarry Smith 	    col--;
430081824310SBarry Smith #else
430181824310SBarry Smith             col = aij->colmap[in[j]] - 1;
430281824310SBarry Smith #endif
430381824310SBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
430481824310SBarry Smith               ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
430581824310SBarry Smith               col =  in[j];
430681824310SBarry Smith               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
430781824310SBarry Smith               B = aij->B;
430881824310SBarry Smith               b = (Mat_SeqAIJ*)B->data;
430981824310SBarry Smith               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
431081824310SBarry Smith               rp2      = bj + bi[row];
431181824310SBarry Smith               ap2      = ba + bi[row];
431281824310SBarry Smith               rmax2    = bimax[row];
431381824310SBarry Smith               nrow2    = bilen[row];
431481824310SBarry Smith               low2     = 0;
431581824310SBarry Smith               high2    = nrow2;
4316899cda47SBarry Smith               bm       = aij->B->rmap.n;
431781824310SBarry Smith               ba = b->a;
431881824310SBarry Smith             }
431981824310SBarry Smith           } else col = in[j];
432081824310SBarry Smith           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
432181824310SBarry Smith         }
432281824310SBarry Smith       }
432381824310SBarry Smith     } else {
432481824310SBarry Smith       if (!aij->donotstash) {
432581824310SBarry Smith         if (roworiented) {
432681824310SBarry Smith           if (ignorezeroentries && v[i*n] == 0.0) continue;
432781824310SBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
432881824310SBarry Smith         } else {
432981824310SBarry Smith           if (ignorezeroentries && v[i] == 0.0) continue;
433081824310SBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
433181824310SBarry Smith         }
433281824310SBarry Smith       }
433381824310SBarry Smith     }
433481824310SBarry Smith   }}
433581824310SBarry Smith   PetscFunctionReturnVoid();
433681824310SBarry Smith }
433781824310SBarry Smith EXTERN_C_END
433803bfb495SBarry Smith 
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