1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663120d049SRichard Tran Mills 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168f74ef234SStefano Zampini } 169f74ef234SStefano Zampini 170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 171d71ae5a4SJacob Faibussowitsch { 17226bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17326bda2c4Sstefano_zampini 17426bda2c4Sstefano_zampini PetscFunctionBegin; 17546533700Sstefano_zampini if (mat->A) { 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1779566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17846533700Sstefano_zampini } 1793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18026bda2c4Sstefano_zampini } 18126bda2c4Sstefano_zampini 182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 183d71ae5a4SJacob Faibussowitsch { 18427d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18627d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18727d4218bSShri Abhyankar const PetscInt *ia, *ib; 188ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18927d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 19027d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19127d4218bSShri Abhyankar 19227d4218bSShri Abhyankar PetscFunctionBegin; 193f4259b30SLisandro Dalcin *keptrows = NULL; 194ce496241SStefano Zampini 19527d4218bSShri Abhyankar ia = a->i; 19627d4218bSShri Abhyankar ib = b->i; 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19927d4218bSShri Abhyankar for (i = 0; i < m; i++) { 20027d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20127d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20227d4218bSShri Abhyankar if (!na && !nb) { 20327d4218bSShri Abhyankar cnt++; 20427d4218bSShri Abhyankar goto ok1; 20527d4218bSShri Abhyankar } 206ce496241SStefano Zampini aa = aav + ia[i]; 20727d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20827d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20927d4218bSShri Abhyankar } 210*8e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21127d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21227d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21327d4218bSShri Abhyankar } 21427d4218bSShri Abhyankar cnt++; 21527d4218bSShri Abhyankar ok1:; 21627d4218bSShri Abhyankar } 2171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 218ce496241SStefano Zampini if (!n0rows) { 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222ce496241SStefano Zampini } 2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22427d4218bSShri Abhyankar cnt = 0; 22527d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22627d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22727d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22827d4218bSShri Abhyankar if (!na && !nb) continue; 229ce496241SStefano Zampini aa = aav + ia[i]; 23027d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23127d4218bSShri Abhyankar if (aa[j] != 0.0) { 23227d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23327d4218bSShri Abhyankar goto ok2; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar } 236*8e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23727d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23827d4218bSShri Abhyankar if (bb[j] != 0.0) { 23927d4218bSShri Abhyankar rows[cnt++] = rstart + i; 24027d4218bSShri Abhyankar goto ok2; 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar } 24327d4218bSShri Abhyankar ok2:; 24427d4218bSShri Abhyankar } 2459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24927d4218bSShri Abhyankar } 25027d4218bSShri Abhyankar 251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 252d71ae5a4SJacob Faibussowitsch { 25399e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25494342113SStefano Zampini PetscBool cong; 25599e65526SBarry Smith 25699e65526SBarry Smith PetscFunctionBegin; 2579566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25894342113SStefano Zampini if (Y->assembled && cong) { 2599566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 26099e65526SBarry Smith } else { 2619566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26299e65526SBarry Smith } 2633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26499e65526SBarry Smith } 26599e65526SBarry Smith 266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 267d71ae5a4SJacob Faibussowitsch { 268f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 269f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 270f1f41ecbSJed Brown 271f1f41ecbSJed Brown PetscFunctionBegin; 2720298fd71SBarry Smith *zrows = NULL; 2739566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 275f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2769566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278f1f41ecbSJed Brown } 279f1f41ecbSJed Brown 280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 281d71ae5a4SJacob Faibussowitsch { 2820716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 283a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2840716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2850716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2860716a85fSBarry Smith PetscReal *work; 287ce496241SStefano Zampini const PetscScalar *dummy; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 312857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3140716a85fSBarry Smith } else { 3151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3160716a85fSBarry Smith } 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 318857cbf51SRichard Tran Mills if (type == NORM_2) { 319a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 320857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 321a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3220716a85fSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3240716a85fSBarry Smith } 3250716a85fSBarry Smith 326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 327d71ae5a4SJacob Faibussowitsch { 328e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 329e52d2c62SBarry Smith IS sis, gis; 330e52d2c62SBarry Smith const PetscInt *isis, *igis; 331e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 332e52d2c62SBarry Smith 333e52d2c62SBarry Smith PetscFunctionBegin; 3349566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3359566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 340e52d2c62SBarry Smith 3419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 344e52d2c62SBarry Smith n = ngis + nsis; 3459566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3469566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 347e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3489566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 349e52d2c62SBarry Smith 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355e52d2c62SBarry Smith } 356e52d2c62SBarry Smith 357dd6ea824SBarry Smith /* 3580f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3600f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36272fa4726SStefano Zampini has an order N integer array but is fast to access. 3639e25ed09SBarry Smith */ 364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 365d71ae5a4SJacob Faibussowitsch { 36644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 367d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 368dbb450caSBarry Smith 3693a40ed3dSBarry Smith PetscFunctionBegin; 37008401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 372eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 373c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 374b1fc9764SSatish Balay #else 3759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 376905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 377b1fc9764SSatish Balay #endif 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3799e25ed09SBarry Smith } 3809e25ed09SBarry Smith 381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 382a8f51744SPierre Jolivet do { \ 383db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 384db4deed7SKarl Rupp else high1 = nrow1; \ 385fd3458f5SBarry Smith lastcol1 = col; \ 386fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 387fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 388fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 389fd3458f5SBarry Smith else low1 = t; \ 390ba4e3ef2SSatish Balay } \ 391fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 392fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 393fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3940c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3950c0d7e18SFande Kong ap1[_i] += value; \ 3960c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3970c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3989371c9d4SSatish Balay } else ap1[_i] = value; \ 39930770e4dSSatish Balay goto a_noinsert; \ 4000520107fSSatish Balay } \ 4010520107fSSatish Balay } \ 4029371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4039371c9d4SSatish Balay low1 = 0; \ 4049371c9d4SSatish Balay high1 = nrow1; \ 4059371c9d4SSatish Balay goto a_noinsert; \ 4069371c9d4SSatish Balay } \ 4079371c9d4SSatish Balay if (nonew == 1) { \ 4089371c9d4SSatish Balay low1 = 0; \ 4099371c9d4SSatish Balay high1 = nrow1; \ 4109371c9d4SSatish Balay goto a_noinsert; \ 4119371c9d4SSatish Balay } \ 41208401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 413fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4149371c9d4SSatish Balay N = nrow1++ - 1; \ 4159371c9d4SSatish Balay a->nz++; \ 4169371c9d4SSatish Balay high1++; \ 4170520107fSSatish Balay /* shift up all the later entries in this row */ \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 420fd3458f5SBarry Smith rp1[_i] = col; \ 421fd3458f5SBarry Smith ap1[_i] = value; \ 422e56f5c9eSBarry Smith A->nonzerostate++; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 467e56f5c9eSBarry Smith B->nonzerostate++; \ 46830770e4dSSatish Balay b_noinsert:; \ 469fd3458f5SBarry Smith bilen[row] = nrow2; \ 470a8f51744SPierre Jolivet } while (0) 47130770e4dSSatish Balay 472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 473d71ae5a4SJacob Faibussowitsch { 4742fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4752fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4762fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 477fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith PetscFunctionBegin; 4802fd7e33dSBarry Smith /* code only works for square matrices A */ 4812fd7e33dSBarry Smith 4822fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4842fd7e33dSBarry Smith row = row - diag; 4852fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4862fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4872fd7e33dSBarry Smith } 488fff043a9SJunchao Zhang if (l) { 4899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 492fff043a9SJunchao Zhang } 4932fd7e33dSBarry Smith 4942fd7e33dSBarry Smith /* diagonal part */ 495fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 499fff043a9SJunchao Zhang } 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* right of diagonal part */ 502fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 506fff043a9SJunchao Zhang } 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5082fd7e33dSBarry Smith } 5092fd7e33dSBarry Smith 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 511d71ae5a4SJacob Faibussowitsch { 51244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 513071fcb05SBarry Smith PetscScalar value = 0.0; 514d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 515d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 516ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5178a729477SBarry Smith 5180520107fSSatish Balay /* Some Variables required in the macro */ 5194ee7247eSSatish Balay Mat A = aij->A; 5204ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52157809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 522ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52330770e4dSSatish Balay Mat B = aij->B; 52430770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 525d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 526ce496241SStefano Zampini MatScalar *aa, *ba; 527fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5288d76821aSHong Zhang PetscInt nonew; 529a77337e4SBarry Smith MatScalar *ap1, *ap2; 5304ee7247eSSatish Balay 5313a40ed3dSBarry Smith PetscFunctionBegin; 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5348a729477SBarry Smith for (i = 0; i < m; i++) { 5355ef9f2a5SBarry Smith if (im[i] < 0) continue; 53608401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5374b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5384b0e389bSBarry Smith row = im[i] - rstart; 539fd3458f5SBarry Smith lastcol1 = -1; 540*8e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 541*8e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 542fd3458f5SBarry Smith rmax1 = aimax[row]; 543fd3458f5SBarry Smith nrow1 = ailen[row]; 544fd3458f5SBarry Smith low1 = 0; 545fd3458f5SBarry Smith high1 = nrow1; 546fd3458f5SBarry Smith lastcol2 = -1; 547*8e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 548*8e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 549fd3458f5SBarry Smith rmax2 = bimax[row]; 550d498b1e9SBarry Smith nrow2 = bilen[row]; 551fd3458f5SBarry Smith low2 = 0; 552fd3458f5SBarry Smith high2 = nrow2; 553fd3458f5SBarry Smith 5541eb62cbbSBarry Smith for (j = 0; j < n; j++) { 555071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 556c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 557fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 558fd3458f5SBarry Smith col = in[j] - cstart; 5598d76821aSHong Zhang nonew = a->nonew; 560d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 561f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 562f7d195e4SLawrence Mitchell continue; 563f7d195e4SLawrence Mitchell } else { 564f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 565227d817aSBarry Smith if (mat->was_assembled) { 56648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 568eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 569fa46199cSSatish Balay col--; 570b1fc9764SSatish Balay #else 571905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 572b1fc9764SSatish Balay #endif 573fff043a9SJunchao Zhang if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */ 5749566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5754b0e389bSBarry Smith col = in[j]; 5769bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 577f9508a3cSSatish Balay B = aij->B; 578f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5799371c9d4SSatish Balay bimax = b->imax; 5809371c9d4SSatish Balay bi = b->i; 5819371c9d4SSatish Balay bilen = b->ilen; 5829371c9d4SSatish Balay bj = b->j; 5839371c9d4SSatish Balay ba = b->a; 584d498b1e9SBarry Smith rp2 = bj + bi[row]; 585d498b1e9SBarry Smith ap2 = ba + bi[row]; 586d498b1e9SBarry Smith rmax2 = bimax[row]; 587d498b1e9SBarry Smith nrow2 = bilen[row]; 588d498b1e9SBarry Smith low2 = 0; 589d498b1e9SBarry Smith high2 = nrow2; 590d0f46423SBarry Smith bm = aij->B->rmap->n; 591f9508a3cSSatish Balay ba = b->a; 592d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 5930587a0fcSBarry Smith if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) { 5949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5960587a0fcSBarry Smith } 597c48de900SBarry Smith } else col = in[j]; 5988d76821aSHong Zhang nonew = b->nonew; 599d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6001eb62cbbSBarry Smith } 6011eb62cbbSBarry Smith } 6025ef9f2a5SBarry Smith } else { 60328b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60490f02eecSBarry Smith if (!aij->donotstash) { 6055080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 606d36fbae8SSatish Balay if (roworiented) { 607*8e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 608d36fbae8SSatish Balay } else { 609*8e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6104b0e389bSBarry Smith } 6111eb62cbbSBarry Smith } 6128a729477SBarry Smith } 61390f02eecSBarry Smith } 6145519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6178a729477SBarry Smith } 6188a729477SBarry Smith 6192b08fdbeSandi selinger /* 620904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6212b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 622904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6232b08fdbeSandi selinger */ 624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 625d71ae5a4SJacob Faibussowitsch { 626904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 627904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6284cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 629904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 630904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 631904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 632904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 633904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6346dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 635904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 636904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 637904d1e70Sandi selinger 638904d1e70Sandi selinger PetscFunctionBegin; 639904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 640904d1e70Sandi selinger for (j = 0; j < am; j++) { 641904d1e70Sandi selinger dnz = onz = 0; 642904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6436dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 644904d1e70Sandi selinger /* If column is in the diagonal */ 645904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 646904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 647904d1e70Sandi selinger dnz++; 648904d1e70Sandi selinger } else { /* off-diagonal entries */ 649904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 650904d1e70Sandi selinger onz++; 651904d1e70Sandi selinger } 652904d1e70Sandi selinger } 653904d1e70Sandi selinger ailen[j] = dnz; 654904d1e70Sandi selinger bilen[j] = onz; 655904d1e70Sandi selinger } 6563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 657904d1e70Sandi selinger } 658904d1e70Sandi selinger 659904d1e70Sandi selinger /* 660904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 661904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6621de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6631de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6641de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 665904d1e70Sandi selinger */ 666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 667d71ae5a4SJacob Faibussowitsch { 6683a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6693a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6704cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 671e9ede7d0Sandi selinger Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data; 6723a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6733a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6743a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6753a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6763a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6776dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6781de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 679904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 680904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6813a063d27Sandi selinger 6823a063d27Sandi selinger PetscFunctionBegin; 6833a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6843a063d27Sandi selinger for (j = 0; j < am; j++) { 685904d1e70Sandi selinger dnz_row = onz_row = 0; 686904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 687904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 688e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 689e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 690ae8e66a0Sandi selinger /* If column is in the diagonal */ 6913a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 692904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 693904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 694904d1e70Sandi selinger dnz_row++; 695ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 696904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 697904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 698904d1e70Sandi selinger onz_row++; 6993a063d27Sandi selinger } 7003a063d27Sandi selinger } 701904d1e70Sandi selinger ailen[j] = dnz_row; 702904d1e70Sandi selinger bilen[j] = onz_row; 7033a063d27Sandi selinger } 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7053a063d27Sandi selinger } 7063a063d27Sandi selinger 707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 708d71ae5a4SJacob Faibussowitsch { 709b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 710d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 711d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 712b49de8d1SLois Curfman McInnes 7133a40ed3dSBarry Smith PetscFunctionBegin; 714b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71785835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 718b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 719b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 72054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 722b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 723b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7249566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 725fa852ad4SSatish Balay } else { 72648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 728eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 729fa46199cSSatish Balay col--; 730b1fc9764SSatish Balay #else 731905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 732b1fc9764SSatish Balay #endif 733e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73448a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 737b49de8d1SLois Curfman McInnes } 7383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 739b49de8d1SLois Curfman McInnes } 740bc5ccf88SSatish Balay 741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 742d71ae5a4SJacob Faibussowitsch { 743bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 744b1d57f15SBarry Smith PetscInt nstash, reallocs; 745bc5ccf88SSatish Balay 746bc5ccf88SSatish Balay PetscFunctionBegin; 7473ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 748bc5ccf88SSatish Balay 7499566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7509566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7519566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 753bc5ccf88SSatish Balay } 754bc5ccf88SSatish Balay 755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 756d71ae5a4SJacob Faibussowitsch { 757bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 758b1d57f15SBarry Smith PetscMPIInt n; 759b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 760e44c0bd4SBarry Smith PetscInt *row, *col; 761ace3abfcSBarry Smith PetscBool other_disassembled; 76287828ca2SBarry Smith PetscScalar *val; 763bc5ccf88SSatish Balay 76491c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7656e111a19SKarl Rupp 766bc5ccf88SSatish Balay PetscFunctionBegin; 7674cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 768a2d1c673SSatish Balay while (1) { 7699566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 770a2d1c673SSatish Balay if (!flg) break; 771a2d1c673SSatish Balay 772bc5ccf88SSatish Balay for (i = 0; i < n;) { 773bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7742205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7752205254eSKarl Rupp if (row[j] != rstart) break; 7762205254eSKarl Rupp } 777bc5ccf88SSatish Balay if (j < n) ncols = j - i; 778bc5ccf88SSatish Balay else ncols = n - i; 779bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 781bc5ccf88SSatish Balay i = j; 782bc5ccf88SSatish Balay } 783bc5ccf88SSatish Balay } 7849566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 785bc5ccf88SSatish Balay } 7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 787c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7889ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7899ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7919566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7929ecce9b1SRichard Tran Mills } 793e2cf4d64SStefano Zampini #endif 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 796bc5ccf88SSatish Balay 797bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 798071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 799bc5ccf88SSatish Balay /* 800bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 801bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 802bc5ccf88SSatish Balay */ 803bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8045f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80535cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8069566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 807ad59fb31SSatish Balay } 808ad59fb31SSatish Balay } 80948a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8109566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 812c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 813e2cf4d64SStefano Zampini #endif 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 816bc5ccf88SSatish Balay 8179566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8182205254eSKarl Rupp 819f4259b30SLisandro Dalcin aij->rowvalues = NULL; 820a30b2313SHong Zhang 8219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 822e56f5c9eSBarry Smith 8234f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8244f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 825e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 827e56f5c9eSBarry Smith } 8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 829c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 830e2cf4d64SStefano Zampini #endif 8313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 832bc5ccf88SSatish Balay } 833bc5ccf88SSatish Balay 834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 835d71ae5a4SJacob Faibussowitsch { 83644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8373a40ed3dSBarry Smith 8383a40ed3dSBarry Smith PetscFunctionBegin; 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8421eb62cbbSBarry Smith } 8431eb62cbbSBarry Smith 844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 845d71ae5a4SJacob Faibussowitsch { 8461b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 847a92ad425SStefano Zampini PetscObjectState sA, sB; 8481b1dd7adSMatthew G. Knepley PetscInt *lrows; 8496e520ac8SStefano Zampini PetscInt r, len; 850a92ad425SStefano Zampini PetscBool cong, lch, gch; 8511eb62cbbSBarry Smith 8523a40ed3dSBarry Smith PetscFunctionBegin; 8536e520ac8SStefano Zampini /* get locally owned rows */ 8549566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8559566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 85697b48c8fSBarry Smith /* fix right hand side if needed */ 85797b48c8fSBarry Smith if (x && b) { 8581b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8591b1dd7adSMatthew G. Knepley PetscScalar *bb; 8601b1dd7adSMatthew G. Knepley 86128b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8629566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8639566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8641b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86797b48c8fSBarry Smith } 868a92ad425SStefano Zampini 869a92ad425SStefano Zampini sA = mat->A->nonzerostate; 870a92ad425SStefano Zampini sB = mat->B->nonzerostate; 871a92ad425SStefano Zampini 872a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8739566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8749566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 875a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 876a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 877a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 878a92ad425SStefano Zampini PetscInt nnwA, nnwB; 879a92ad425SStefano Zampini PetscBool nnzA, nnzB; 880a92ad425SStefano Zampini 881a92ad425SStefano Zampini nnwA = aijA->nonew; 882a92ad425SStefano Zampini nnwB = aijB->nonew; 883a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 884a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 885a92ad425SStefano Zampini if (!nnzA) { 8869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 887a92ad425SStefano Zampini aijA->nonew = 0; 888a92ad425SStefano Zampini } 889a92ad425SStefano Zampini if (!nnzB) { 8909566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 891a92ad425SStefano Zampini aijB->nonew = 0; 892a92ad425SStefano Zampini } 893a92ad425SStefano Zampini /* Must zero here before the next loop */ 8949566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8959566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8961b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8971b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 898a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8999566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 900e2d53e46SBarry Smith } 901a92ad425SStefano Zampini aijA->nonew = nnwA; 902a92ad425SStefano Zampini aijB->nonew = nnwB; 9036eb55b6aSBarry Smith } else { 9049566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9066eb55b6aSBarry Smith } 9079566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9104f9cfa9eSBarry Smith 911a92ad425SStefano Zampini /* reduce nonzerostate */ 912a92ad425SStefano Zampini lch = (PetscBool)(sA != mat->A->nonzerostate || sB != mat->B->nonzerostate); 9131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lch, &gch, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)A))); 914a92ad425SStefano Zampini if (gch) A->nonzerostate++; 9153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9161eb62cbbSBarry Smith } 9171eb62cbbSBarry Smith 918ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 919d71ae5a4SJacob Faibussowitsch { 9209c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9215ba17502SJed Brown PetscMPIInt n = A->rmap->n; 922131c27b5Sprj- PetscInt i, j, r, m, len = 0; 92354bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 924131c27b5Sprj- PetscMPIInt p = 0; 92554bd4135SMatthew G. Knepley PetscSFNode *rrows; 92654bd4135SMatthew G. Knepley PetscSF sf; 9279c7c4993SBarry Smith const PetscScalar *xx; 928fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 929564f14d6SBarry Smith Vec xmask, lmask; 930564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 931564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 932564f14d6SBarry Smith PetscScalar *aa; 9339c7c4993SBarry Smith 9349c7c4993SBarry Smith PetscFunctionBegin; 93554bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93754bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93954bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 94054bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 941aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9425ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9439566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9445ba17502SJed Brown } 94554bd4135SMatthew G. Knepley rrows[r].rank = p; 94654bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9479c7c4993SBarry Smith } 9489566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 95054bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9519566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9529566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95454bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9559371c9d4SSatish Balay for (r = 0; r < n; ++r) 9569371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 957564f14d6SBarry Smith /* zero diagonal part of matrix */ 9589566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9594cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9609566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9619566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9629566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 96354bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9659566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9669566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 968a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 969a92ad425SStefano Zampini PetscBool cong; 970a92ad425SStefano Zampini 9719566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 97228b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9759566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9769566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 977377aa5a1SBarry Smith } 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9794cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 981564f14d6SBarry Smith ii = aij->i; 982*8e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 983564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 984564f14d6SBarry Smith if (aij->compressedrow.use) { 985564f14d6SBarry Smith m = aij->compressedrow.nrows; 986564f14d6SBarry Smith ii = aij->compressedrow.i; 987564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 988564f14d6SBarry Smith for (i = 0; i < m; i++) { 989564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 990564f14d6SBarry Smith aj = aij->j + ii[i]; 991fff043a9SJunchao Zhang aa = aij_a + ii[i]; 992564f14d6SBarry Smith 993564f14d6SBarry Smith for (j = 0; j < n; j++) { 99425266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 995377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 996564f14d6SBarry Smith *aa = 0.0; 997564f14d6SBarry Smith } 998564f14d6SBarry Smith aa++; 999564f14d6SBarry Smith aj++; 1000564f14d6SBarry Smith } 1001564f14d6SBarry Smith ridx++; 1002564f14d6SBarry Smith } 1003564f14d6SBarry Smith } else { /* do not use compressed row format */ 1004564f14d6SBarry Smith m = l->B->rmap->n; 1005564f14d6SBarry Smith for (i = 0; i < m; i++) { 1006564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1007564f14d6SBarry Smith aj = aij->j + ii[i]; 1008fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith } 1018564f14d6SBarry Smith } 1019a92ad425SStefano Zampini if (x && b) { 10209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1022377aa5a1SBarry Smith } 10239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10259566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10269566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10274f9cfa9eSBarry Smith 10284f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 10294f9cfa9eSBarry Smith if (!((Mat_SeqAIJ *)(l->A->data))->keepnonzeropattern) { 10304f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10311c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10324f9cfa9eSBarry Smith } 10333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10349c7c4993SBarry Smith } 10359c7c4993SBarry Smith 1036ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1037d71ae5a4SJacob Faibussowitsch { 1038416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1039b1d57f15SBarry Smith PetscInt nt; 104019b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1041416022c9SBarry Smith 10423a40ed3dSBarry Smith PetscFunctionBegin; 10439566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104408401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1046296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1048296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10501eb62cbbSBarry Smith } 10511eb62cbbSBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1053d71ae5a4SJacob Faibussowitsch { 1054bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055bd0c2dcbSBarry Smith 1056bd0c2dcbSBarry Smith PetscFunctionBegin; 10579566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1059bd0c2dcbSBarry Smith } 1060bd0c2dcbSBarry Smith 1061ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1062d71ae5a4SJacob Faibussowitsch { 1063416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106401ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10653a40ed3dSBarry Smith 10663a40ed3dSBarry Smith PetscFunctionBegin; 10679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10689566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10699566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10709566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1072da3a660dSBarry Smith } 1073da3a660dSBarry Smith 1074ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1075d71ae5a4SJacob Faibussowitsch { 1076416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1077da3a660dSBarry Smith 10783a40ed3dSBarry Smith PetscFunctionBegin; 1079da3a660dSBarry Smith /* do nondiagonal part */ 10809566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1081da3a660dSBarry Smith /* do local part */ 10829566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10839613dc34SJunchao Zhang /* add partial results together */ 10849566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087da3a660dSBarry Smith } 1088da3a660dSBarry Smith 1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1090d71ae5a4SJacob Faibussowitsch { 10914f423910Svictorle MPI_Comm comm; 1092ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1093ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1094cd0d46ebSvictorle IS Me, Notme; 1095b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109654d735aeSStefano Zampini PetscBool lf; 1097b1d57f15SBarry Smith PetscMPIInt size; 1098cd0d46ebSvictorle 1099cd0d46ebSvictorle PetscFunctionBegin; 110042e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11019566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 11021c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11033ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11063ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110742e5f5b4Svictorle 11087dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11099566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1112cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1113cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11159566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111766501d38Svictorle Aoff = Aoffs[0]; 11189566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111966501d38Svictorle Boff = Boffs[0]; 11209566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11219566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11229566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11259566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1127cd0d46ebSvictorle } 1128cd0d46ebSvictorle 1129ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f) 1130d71ae5a4SJacob Faibussowitsch { 1131a3bbdb47SHong Zhang PetscFunctionBegin; 11329566063dSJacob Faibussowitsch PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f)); 11333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1134a3bbdb47SHong Zhang } 1135a3bbdb47SHong Zhang 1136ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1137d71ae5a4SJacob Faibussowitsch { 1138416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1139da3a660dSBarry Smith 11403a40ed3dSBarry Smith PetscFunctionBegin; 1141da3a660dSBarry Smith /* do nondiagonal part */ 11429566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1143da3a660dSBarry Smith /* do local part */ 11449566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11459613dc34SJunchao Zhang /* add partial results together */ 11469566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1149da3a660dSBarry Smith } 1150da3a660dSBarry Smith 11511eb62cbbSBarry Smith /* 11521eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11531eb62cbbSBarry Smith diagonal block 11541eb62cbbSBarry Smith */ 1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1156d71ae5a4SJacob Faibussowitsch { 1157416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11583a40ed3dSBarry Smith 11593a40ed3dSBarry Smith PetscFunctionBegin; 116008401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1161aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11629566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11641eb62cbbSBarry Smith } 11651eb62cbbSBarry Smith 1166ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1167d71ae5a4SJacob Faibussowitsch { 1168052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11693a40ed3dSBarry Smith 11703a40ed3dSBarry Smith PetscFunctionBegin; 11719566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11729566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1174052efed2SBarry Smith } 1175052efed2SBarry Smith 1176ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1177d71ae5a4SJacob Faibussowitsch { 11788e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11798e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11808e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11813ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11822e5835c6SStefano Zampini const PetscScalar *aa, *ba; 118317a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 118417a3732bSBarry Smith PetscInt64 nz, hnz; 11853ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11863ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11873ea6fe3dSLisandro Dalcin PetscScalar *matvals; 118817a3732bSBarry Smith PetscMPIInt rank; 11898e2fed03SBarry Smith 11908e2fed03SBarry Smith PetscFunctionBegin; 11919566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11923ea6fe3dSLisandro Dalcin 11933ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11943ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11953ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11963ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11973ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11988e2fed03SBarry Smith nz = A->nz + B->nz; 11993ea6fe3dSLisandro Dalcin 12003ea6fe3dSLisandro Dalcin /* write matrix header */ 12010700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12029371c9d4SSatish Balay header[1] = M; 12039371c9d4SSatish Balay header[2] = N; 120417a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 120517a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 120638b83642SBarry Smith if (rank == 0) { 120738b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 120838b83642SBarry Smith else header[3] = (PetscInt)hnz; 120938b83642SBarry Smith } 12109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12118e2fed03SBarry Smith 12123ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12143ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12169566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12203ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12213ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12223ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12233ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12248e2fed03SBarry Smith } 12259371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12269371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12278e2fed03SBarry Smith } 122817a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12299566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12309566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12318e2fed03SBarry Smith 12323ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12363ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12373ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12383ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12392e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12408e2fed03SBarry Smith } 12419371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12429371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12438e2fed03SBarry Smith } 12449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 124617a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12479566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12489566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12498e2fed03SBarry Smith 12503ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12519566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12538e2fed03SBarry Smith } 12548e2fed03SBarry Smith 12559804daf3SBarry Smith #include <petscdraw.h> 1256ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1257d71ae5a4SJacob Faibussowitsch { 125844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 125932dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1260ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1261b0a32e0cSBarry Smith PetscViewer sviewer; 1262f3ef73ceSBarry Smith PetscViewerFormat format; 1263416022c9SBarry Smith 12643a40ed3dSBarry Smith PetscFunctionBegin; 12659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 126832077d6dSBarry Smith if (iascii) { 12699566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1270ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1271ef5fdb51SBarry Smith PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz; 12729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1274ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1275ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1276ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1277ef5fdb51SBarry Smith navg += nz[i]; 1278ef5fdb51SBarry Smith } 12799566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1280ef5fdb51SBarry Smith navg = navg / size; 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283ef5fdb51SBarry Smith } 12849566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1285456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12864e220ebcSLois Curfman McInnes MatInfo info; 12876335e310SSatish Balay PetscInt *inodes = NULL; 1288923f20ffSKris Buschelman 12899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12909566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12919566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1293923f20ffSKris Buschelman if (!inodes) { 12949371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12959371c9d4SSatish Balay (double)info.memory)); 12966831982aSBarry Smith } else { 12979371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12989371c9d4SSatish Balay (double)info.memory)); 12996831982aSBarry Smith } 13009566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13049566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13079566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1309fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1310923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13119566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1312923f20ffSKris Buschelman if (inodes) { 13139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1314d38fa0fbSBarry Smith } else { 13159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1316d38fa0fbSBarry Smith } 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13184aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132008480c60SBarry Smith } 13218e2fed03SBarry Smith } else if (isbinary) { 13228e2fed03SBarry Smith if (size == 1) { 13239566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13249566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13258e2fed03SBarry Smith } else { 13269566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13278e2fed03SBarry Smith } 13283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132971e56450SStefano Zampini } else if (iascii && size == 1) { 13309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13319566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13330f5bd95cSBarry Smith } else if (isdraw) { 1334b0a32e0cSBarry Smith PetscDraw draw; 1335ace3abfcSBarry Smith PetscBool isnull; 13369566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13379566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13383ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 133919bcc07fSBarry Smith } 134019bcc07fSBarry Smith 134171e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134271e56450SStefano Zampini Mat A = NULL, Av; 134371e56450SStefano Zampini IS isrow, iscol; 13442ee70a88SLois Curfman McInnes 13459566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13469566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13479566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13489566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 134971e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135071e56450SStefano Zampini /* 135171e56450SStefano Zampini Mat *AA, A = NULL, Av; 135271e56450SStefano Zampini IS isrow,iscol; 135371e56450SStefano Zampini 13549566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13559566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13569566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1357dd400576SPatrick Sanan if (rank == 0) { 13589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 135971e56450SStefano Zampini A = AA[0]; 136071e56450SStefano Zampini Av = AA[0]; 136195373324SBarry Smith } 13629566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136371e56450SStefano Zampini */ 13649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 136655843e3eSBarry Smith /* 136755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1368b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 136955843e3eSBarry Smith */ 13709566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1371dd400576SPatrick Sanan if (rank == 0) { 137248a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13739566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137495373324SBarry Smith } 13759566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 137795373324SBarry Smith } 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13791eb62cbbSBarry Smith } 13801eb62cbbSBarry Smith 1381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1382d71ae5a4SJacob Faibussowitsch { 1383ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1384416022c9SBarry Smith 13853a40ed3dSBarry Smith PetscFunctionBegin; 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13889566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139048a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1392416022c9SBarry Smith } 1393416022c9SBarry Smith 1394ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1395d71ae5a4SJacob Faibussowitsch { 139644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1397f4259b30SLisandro Dalcin Vec bb1 = NULL; 1398ace3abfcSBarry Smith PetscBool hasop; 13998a729477SBarry Smith 14003a40ed3dSBarry Smith PetscFunctionBegin; 1401a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14029566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1404a2b30743SBarry Smith } 1405a2b30743SBarry Smith 140648a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14074e980039SJed Brown 1408c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1409da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14112798e883SHong Zhang its--; 1412da3a660dSBarry Smith } 14132798e883SHong Zhang 14142798e883SHong Zhang while (its--) { 14159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14172798e883SHong Zhang 1418c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14199566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14209566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14212798e883SHong Zhang 1422c14dc6b6SHong Zhang /* local sweep */ 14239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14242798e883SHong Zhang } 14253a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1426da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14282798e883SHong Zhang its--; 1429da3a660dSBarry Smith } 14302798e883SHong Zhang while (its--) { 14319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14332798e883SHong Zhang 1434c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14359566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14369566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1437c14dc6b6SHong Zhang 1438c14dc6b6SHong Zhang /* local sweep */ 14399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14402798e883SHong Zhang } 14413a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1442da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14442798e883SHong Zhang its--; 1445da3a660dSBarry Smith } 14462798e883SHong Zhang while (its--) { 14479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14492798e883SHong Zhang 1450c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14519566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14529566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14532798e883SHong Zhang 1454c14dc6b6SHong Zhang /* local sweep */ 14559566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14562798e883SHong Zhang } 1457a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1458a7420bb7SBarry Smith Vec xx1; 1459a7420bb7SBarry Smith 14609566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1462a7420bb7SBarry Smith 14639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14649566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1465a7420bb7SBarry Smith if (!mat->diag) { 14669566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14679566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1468a7420bb7SBarry Smith } 14699566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1470bd0c2dcbSBarry Smith if (hasop) { 14719566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1472bd0c2dcbSBarry Smith } else { 14739566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1474bd0c2dcbSBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1476887ee2caSBarry Smith 14779566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1478a7420bb7SBarry Smith 1479a7420bb7SBarry Smith /* local sweep */ 14809566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14819566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1483ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1484c14dc6b6SHong Zhang 14859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1486a0808db4SHong Zhang 14877b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14898a729477SBarry Smith } 1490a66be287SLois Curfman McInnes 1491ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1492d71ae5a4SJacob Faibussowitsch { 149372e6a0cfSJed Brown Mat aA, aB, Aperm; 149472e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 149572e6a0cfSJed Brown PetscScalar *aa, *ba; 149672e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 149772e6a0cfSJed Brown PetscSF rowsf, sf; 14980298fd71SBarry Smith IS parcolp = NULL; 149972e6a0cfSJed Brown PetscBool done; 150042e855d1Svictor 150142e855d1Svictor PetscFunctionBegin; 15029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15059566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 150672e6a0cfSJed Brown 150772e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15089566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15099566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151172e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151472e6a0cfSJed Brown 151572e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 151972e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152372e6a0cfSJed Brown 15249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 152772e6a0cfSJed Brown 152872e6a0cfSJed Brown /* Find out where my gcols should go */ 15299566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15319566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15339566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15369566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 153772e6a0cfSJed Brown 15389566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15399566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15409566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154172e6a0cfSJed Brown for (i = 0; i < m; i++) { 1542131c27b5Sprj- PetscInt row = rdest[i]; 1543131c27b5Sprj- PetscMPIInt rowner; 15449566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 154572e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1546131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1547131c27b5Sprj- PetscMPIInt cowner; 15489566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 154972e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155072e6a0cfSJed Brown else onnz[i]++; 155172e6a0cfSJed Brown } 155272e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1553131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1554131c27b5Sprj- PetscMPIInt cowner; 15559566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 155672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155772e6a0cfSJed Brown else onnz[i]++; 155872e6a0cfSJed Brown } 155972e6a0cfSJed Brown } 15609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 156572e6a0cfSJed Brown 15669566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 156972e6a0cfSJed Brown for (i = 0; i < m; i++) { 157072e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1571970468b0SJed Brown PetscInt j0, rowlen; 157272e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1573970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1574970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15759566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1576970468b0SJed Brown } 157772e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1578970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1579970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15809566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1581970468b0SJed Brown } 158272e6a0cfSJed Brown } 15839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15859566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15869566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15899566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15909566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15919566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15929566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159372e6a0cfSJed Brown *B = Aperm; 15943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159542e855d1Svictor } 159642e855d1Svictor 1597ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1598d71ae5a4SJacob Faibussowitsch { 1599c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1600c5e4d11fSDmitry Karpeev 1601c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16029566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1603c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1605c5e4d11fSDmitry Karpeev } 1606c5e4d11fSDmitry Karpeev 1607ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1608d71ae5a4SJacob Faibussowitsch { 1609a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1610a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16113966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1612a66be287SLois Curfman McInnes 16133a40ed3dSBarry Smith PetscFunctionBegin; 16144e220ebcSLois Curfman McInnes info->block_size = 1.0; 16159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16162205254eSKarl Rupp 16179371c9d4SSatish Balay isend[0] = info->nz_used; 16189371c9d4SSatish Balay isend[1] = info->nz_allocated; 16199371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16209371c9d4SSatish Balay isend[3] = info->memory; 16219371c9d4SSatish Balay isend[4] = info->mallocs; 16222205254eSKarl Rupp 16239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16242205254eSKarl Rupp 16259371c9d4SSatish Balay isend[0] += info->nz_used; 16269371c9d4SSatish Balay isend[1] += info->nz_allocated; 16279371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16289371c9d4SSatish Balay isend[3] += info->memory; 16299371c9d4SSatish Balay isend[4] += info->mallocs; 1630a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16314e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16324e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16334e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16344e220ebcSLois Curfman McInnes info->memory = isend[3]; 16354e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1636a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16371c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16382205254eSKarl Rupp 16394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1644a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16462205254eSKarl Rupp 16474e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16484e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16494e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16504e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16514e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1652a66be287SLois Curfman McInnes } 16534e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16544e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16554e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1657a66be287SLois Curfman McInnes } 1658a66be287SLois Curfman McInnes 1659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1660d71ae5a4SJacob Faibussowitsch { 1661c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1662c74985f6SBarry Smith 16633a40ed3dSBarry Smith PetscFunctionBegin; 166412c028f9SKris Buschelman switch (op) { 1665512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 166612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 166728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1668a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 166912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16700ad02fcaSStefano Zampini case MAT_USE_INODES: 167112c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16721a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1673fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16749566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16759566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167612c028f9SKris Buschelman break; 167712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 167843674050SBarry Smith MatCheckPreallocated(A, 1); 16794e0d8c25SBarry Smith a->roworiented = flg; 16802205254eSKarl Rupp 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16829566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168312c028f9SKris Buschelman break; 16848c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1685d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1686d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1687d71ae5a4SJacob Faibussowitsch break; 1688d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1689d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1690d71ae5a4SJacob Faibussowitsch break; 1691c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1692ffa07934SHong Zhang case MAT_SPD: 169377e54ba9SKris Buschelman case MAT_SYMMETRIC: 169477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1695bf108f30SBarry Smith case MAT_HERMITIAN: 1696bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1697b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1698b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1699b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 170077e54ba9SKris Buschelman break; 1701d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1702d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1703d71ae5a4SJacob Faibussowitsch break; 1704957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1705957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1706957cac9fSHong Zhang break; 1707d71ae5a4SJacob Faibussowitsch default: 1708d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 18321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836329f5518SBarry Smith PetscReal *tmp, *tmp2; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 184004ca555eSLois Curfman McInnes *norm = 0.0; 18419371c9d4SSatish Balay v = amata; 18429371c9d4SSatish Balay jj = amat->j; 184304ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18449371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18459371c9d4SSatish Balay v++; 184604ca555eSLois Curfman McInnes } 18479371c9d4SSatish Balay v = bmata; 18489371c9d4SSatish Balay jj = bmat->j; 184904ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18509371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18519371c9d4SSatish Balay v++; 185204ca555eSLois Curfman McInnes } 18531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1854d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 185504ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 185604ca555eSLois Curfman McInnes } 18579566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18599566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18603a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1861329f5518SBarry Smith PetscReal ntemp = 0.0; 1862d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 1863*8e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186404ca555eSLois Curfman McInnes sum = 0.0; 186504ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18669371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18679371c9d4SSatish Balay v++; 186804ca555eSLois Curfman McInnes } 1869*8e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 187004ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18719371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18729371c9d4SSatish Balay v++; 187304ca555eSLois Curfman McInnes } 1874515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187504ca555eSLois Curfman McInnes } 18761c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18779566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1878ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 188137fa93a5SLois Curfman McInnes } 18823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1883855ac2c5SLois Curfman McInnes } 1884855ac2c5SLois Curfman McInnes 1885ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1886d71ae5a4SJacob Faibussowitsch { 1887a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1888a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1889071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1890071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1891a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1892ce496241SStefano Zampini const MatScalar *pbv, *bv; 1893b7c46309SBarry Smith 18943a40ed3dSBarry Smith PetscFunctionBegin; 18957fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18969371c9d4SSatish Balay ma = A->rmap->n; 18979371c9d4SSatish Balay na = A->cmap->n; 18989371c9d4SSatish Balay mb = a->B->rmap->n; 18999371c9d4SSatish Balay nb = a->B->cmap->n; 19009371c9d4SSatish Balay ai = Aloc->i; 19019371c9d4SSatish Balay aj = Aloc->j; 19029371c9d4SSatish Balay bi = Bloc->i; 19039371c9d4SSatish Balay bj = Bloc->j; 1904fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190580bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190680bcc5a1SJed Brown PetscSFNode *oloc; 1907713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190880bcc5a1SJed Brown 19099566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 191080bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1912cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191380bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19149566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191580bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191680bcc5a1SJed Brown /* map those to global */ 19179566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19199566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 192157168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192257168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1924d4bb536fSBarry Smith 19259566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19279566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19289566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19299566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19309566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1931fc4dec0aSBarry Smith } else { 1932fc4dec0aSBarry Smith B = *matout; 19339566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1934fc4dec0aSBarry Smith } 1935b7c46309SBarry Smith 1936f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1937a8661f62Sandi selinger A_diag = a->A; 1938a8661f62Sandi selinger B_diag = &b->A; 1939a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1940a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1941a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1942a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1943f79cb1a0Sandi selinger 1944f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1945ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1946f79cb1a0Sandi selinger 19474cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1948a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19497fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19509566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1951f79cb1a0Sandi selinger 1952b7c46309SBarry Smith /* copy over the B part */ 19539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1955ce496241SStefano Zampini pbv = bv; 1956d0f46423SBarry Smith row = A->rmap->rstart; 19572205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195861a2fbbaSHong Zhang cols_tmp = cols; 1959da668accSHong Zhang for (i = 0; i < mb; i++) { 1960da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19619566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19622205254eSKarl Rupp row++; 1963720a2405SPierre Jolivet if (pbv) pbv += ncol; 1964720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1965b7c46309SBarry Smith } 19669566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1968fc73b1b3SBarry Smith 19699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1971cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19720de55854SLois Curfman McInnes *matout = B; 19730de55854SLois Curfman McInnes } else { 19749566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19750de55854SLois Curfman McInnes } 19763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1977b7c46309SBarry Smith } 1978b7c46309SBarry Smith 1979ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1980d71ae5a4SJacob Faibussowitsch { 19814b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19824b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1983b1d57f15SBarry Smith PetscInt s1, s2, s3; 1984a008b906SSatish Balay 19853a40ed3dSBarry Smith PetscFunctionBegin; 19869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19874b967eb1SSatish Balay if (rr) { 19889566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198908401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19904b967eb1SSatish Balay /* Overlap communication with computation. */ 19919566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1992a008b906SSatish Balay } 19934b967eb1SSatish Balay if (ll) { 19949566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199508401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19974b967eb1SSatish Balay } 19984b967eb1SSatish Balay /* scale the diagonal block */ 1999dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 20004b967eb1SSatish Balay 20014b967eb1SSatish Balay if (rr) { 20024b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2004dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20054b967eb1SSatish Balay } 20063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2007a008b906SSatish Balay } 2008a008b906SSatish Balay 2009ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2010d71ae5a4SJacob Faibussowitsch { 2011bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20123a40ed3dSBarry Smith 20133a40ed3dSBarry Smith PetscFunctionBegin; 20149566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2016bb5a7306SBarry Smith } 2017bb5a7306SBarry Smith 2018ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2019d71ae5a4SJacob Faibussowitsch { 2020d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2021d4bb536fSBarry Smith Mat a, b, c, d; 2022ace3abfcSBarry Smith PetscBool flg; 2023d4bb536fSBarry Smith 20243a40ed3dSBarry Smith PetscFunctionBegin; 20259371c9d4SSatish Balay a = matA->A; 20269371c9d4SSatish Balay b = matA->B; 20279371c9d4SSatish Balay c = matB->A; 20289371c9d4SSatish Balay d = matB->B; 2029d4bb536fSBarry Smith 20309566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 203148a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2034d4bb536fSBarry Smith } 2035d4bb536fSBarry Smith 2036ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2037d71ae5a4SJacob Faibussowitsch { 2038cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2039cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2040cb5b572fSBarry Smith 2041cb5b572fSBarry Smith PetscFunctionBegin; 204233f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204333f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2044cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2045cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2046cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2047cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2048cb5b572fSBarry Smith then copying the submatrices */ 20499566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2050cb5b572fSBarry Smith } else { 20519566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20529566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2053cb5b572fSBarry Smith } 20549566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2056cb5b572fSBarry Smith } 2057cb5b572fSBarry Smith 2058001ddc4fSHong Zhang /* 2059001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2060001ddc4fSHong Zhang have different nonzero structure. 2061001ddc4fSHong Zhang */ 2062d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2063d71ae5a4SJacob Faibussowitsch { 2064001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206595b7e79eSJed Brown 206695b7e79eSJed Brown PetscFunctionBegin; 206795b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206895b7e79eSJed Brown for (i = 0; i < m; i++) { 2069*8e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2070001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2071001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207295b7e79eSJed Brown nnz[i] = 0; 207395b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2074001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2075001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207695b7e79eSJed Brown nnz[i]++; 207795b7e79eSJed Brown } 207895b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207995b7e79eSJed Brown } 20803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208195b7e79eSJed Brown } 208295b7e79eSJed Brown 2083001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2085d71ae5a4SJacob Faibussowitsch { 2086001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2087001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2088001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2089001ddc4fSHong Zhang 2090001ddc4fSHong Zhang PetscFunctionBegin; 20919566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2093001ddc4fSHong Zhang } 2094001ddc4fSHong Zhang 2095ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2096d71ae5a4SJacob Faibussowitsch { 2097ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2098ac90fabeSBarry Smith 2099ac90fabeSBarry Smith PetscFunctionBegin; 2100ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2103ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21049566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2105ac90fabeSBarry Smith } else { 21069f5f6813SShri Abhyankar Mat B; 21079f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2108d9d719b4SStefano Zampini 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21119566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21139566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21149566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21179566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21189566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21199566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21209566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21219566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2122ac90fabeSBarry Smith } 21233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2124ac90fabeSBarry Smith } 2125ac90fabeSBarry Smith 21262726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2127354c94deSBarry Smith 2128ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2129d71ae5a4SJacob Faibussowitsch { 21305f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21315f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2132354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2133354c94deSBarry Smith 21349566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21359566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21365f80ce2aSJacob Faibussowitsch } 21373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2138354c94deSBarry Smith } 2139354c94deSBarry Smith 2140ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2141d71ae5a4SJacob Faibussowitsch { 214299cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214399cafbc1SBarry Smith 214499cafbc1SBarry Smith PetscFunctionBegin; 21459566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21469566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214899cafbc1SBarry Smith } 214999cafbc1SBarry Smith 2150ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2151d71ae5a4SJacob Faibussowitsch { 215299cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215399cafbc1SBarry Smith 215499cafbc1SBarry Smith PetscFunctionBegin; 21559566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21569566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215899cafbc1SBarry Smith } 215999cafbc1SBarry Smith 2160ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2161d71ae5a4SJacob Faibussowitsch { 2162c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2163475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2164475b8b61SHong Zhang PetscScalar *va, *vv; 2165475b8b61SHong Zhang Vec vB, vA; 2166475b8b61SHong Zhang const PetscScalar *vb; 2167c91732d9SHong Zhang 2168c91732d9SHong Zhang PetscFunctionBegin; 21699566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 21709566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2171475b8b61SHong Zhang 21729566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2173c91732d9SHong Zhang if (idx) { 2174475b8b61SHong Zhang for (i = 0; i < m; i++) { 2175d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2176c91732d9SHong Zhang } 2177c91732d9SHong Zhang } 2178c91732d9SHong Zhang 21799566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 21809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21819566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2182c91732d9SHong Zhang 21839566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21849566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2185475b8b61SHong Zhang for (i = 0; i < m; i++) { 2186c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2187475b8b61SHong Zhang vv[i] = vb[i]; 2188c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2189475b8b61SHong Zhang } else { 2190475b8b61SHong Zhang vv[i] = va[i]; 21919371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2192c91732d9SHong Zhang } 2193c91732d9SHong Zhang } 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21969566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21979566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 22003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2201c91732d9SHong Zhang } 2202c91732d9SHong Zhang 2203ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2204d71ae5a4SJacob Faibussowitsch { 2205f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2206f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2207f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2208f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2209f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2210f07e67edSHong Zhang Vec diagV, offdiagV; 2211ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2212ce496241SStefano Zampini const PetscScalar *ba, *bav; 2213f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2214f07e67edSHong Zhang Mat B = mat->B; 2215f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2216c87e5d42SMatthew Knepley 2217c87e5d42SMatthew Knepley PetscFunctionBegin; 2218f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2219f07e67edSHong Zhang if (A->cmap->N == n) { 22209566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22219566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22229566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2226f07e67edSHong Zhang } else if (n == 0) { 2227f07e67edSHong Zhang if (m) { 22289566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22299371c9d4SSatish Balay for (r = 0; r < m; r++) { 22309371c9d4SSatish Balay a[r] = 0.0; 22319371c9d4SSatish Balay if (idx) idx[r] = -1; 22329371c9d4SSatish Balay } 22339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2234f07e67edSHong Zhang } 22353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2236f07e67edSHong Zhang } 2237f07e67edSHong Zhang 22389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22399566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22409566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22419566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2242f07e67edSHong Zhang 2243f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2245ce496241SStefano Zampini ba = bav; 2246f07e67edSHong Zhang bi = b->i; 2247f07e67edSHong Zhang bj = b->j; 22489566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2249f07e67edSHong Zhang for (r = 0; r < m; r++) { 2250f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2251f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22529371c9d4SSatish Balay offdiagA[r] = *ba; 22539371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2254f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2255f07e67edSHong Zhang offdiagA[r] = 0.0; 2256f07e67edSHong Zhang 2257f07e67edSHong Zhang /* Find first hole in the cmap */ 2258f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2259f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2260f07e67edSHong Zhang if (col > j && j < cstart) { 2261f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2262f07e67edSHong Zhang break; 2263f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2264f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2265f07e67edSHong Zhang break; 2266f07e67edSHong Zhang } 2267f07e67edSHong Zhang } 22684e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2269f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2270f07e67edSHong Zhang if (ncols == 0) { 2271f07e67edSHong Zhang if (cstart) { 2272f07e67edSHong Zhang offdiagIdx[r] = 0; 2273f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2274f07e67edSHong Zhang } else { /* ncols > 0 */ 2275f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2276f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2277f07e67edSHong Zhang } 2278f07e67edSHong Zhang } 2279f07e67edSHong Zhang } 2280f07e67edSHong Zhang 2281f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22829371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22839371c9d4SSatish Balay offdiagA[r] = *ba; 22849371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22859371c9d4SSatish Balay } 22869371c9d4SSatish Balay ba++; 22879371c9d4SSatish Balay bj++; 2288f07e67edSHong Zhang } 2289f07e67edSHong Zhang } 2290f07e67edSHong Zhang 22919566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22929566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2293f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2294f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2295f07e67edSHong Zhang a[r] = diagA[r]; 2296f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2297f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2298f07e67edSHong Zhang a[r] = diagA[r]; 2299c87e5d42SMatthew Knepley if (idx) { 2300f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2301f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2302f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } else { 2305f07e67edSHong Zhang a[r] = offdiagA[r]; 2306f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2307c87e5d42SMatthew Knepley } 2308c87e5d42SMatthew Knepley } 23099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23109566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23119566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23159566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2317c87e5d42SMatthew Knepley } 2318c87e5d42SMatthew Knepley 2319ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2320d71ae5a4SJacob Faibussowitsch { 232103bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2322fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2323fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 232403bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 232503bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 232603bc72f1SMatthew Knepley Vec diagV, offdiagV; 2327ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2328ce496241SStefano Zampini const PetscScalar *ba, *bav; 2329fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2330fa213d2fSHong Zhang Mat B = mat->B; 2331fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 233203bc72f1SMatthew Knepley 233303bc72f1SMatthew Knepley PetscFunctionBegin; 2334fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2335fa213d2fSHong Zhang if (A->cmap->N == n) { 23369566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23379566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23389566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2342fa213d2fSHong Zhang } else if (n == 0) { 2343fa213d2fSHong Zhang if (m) { 23449566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23459371c9d4SSatish Balay for (r = 0; r < m; r++) { 23469371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23479371c9d4SSatish Balay if (idx) idx[r] = -1; 23489371c9d4SSatish Balay } 23499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2350fa213d2fSHong Zhang } 23513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2352fa213d2fSHong Zhang } 2353fa213d2fSHong Zhang 23549566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23569566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23579566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2358fa213d2fSHong Zhang 2359fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2361ce496241SStefano Zampini ba = bav; 2362fa213d2fSHong Zhang bi = b->i; 2363fa213d2fSHong Zhang bj = b->j; 23649566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2365fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2366fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2367fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23689371c9d4SSatish Balay offdiagA[r] = *ba; 23699371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2370fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2371fa213d2fSHong Zhang offdiagA[r] = 0.0; 2372fa213d2fSHong Zhang 2373fa213d2fSHong Zhang /* Find first hole in the cmap */ 2374fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2375fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2376fa213d2fSHong Zhang if (col > j && j < cstart) { 2377fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2378fa213d2fSHong Zhang break; 2379fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2380fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2381fa213d2fSHong Zhang break; 2382fa213d2fSHong Zhang } 2383fa213d2fSHong Zhang } 23844e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2385fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2386fa213d2fSHong Zhang if (ncols == 0) { 2387fa213d2fSHong Zhang if (cstart) { 2388fa213d2fSHong Zhang offdiagIdx[r] = 0; 2389fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2390fa213d2fSHong Zhang } else { /* ncols > 0 */ 2391fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2392fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2393fa213d2fSHong Zhang } 2394fa213d2fSHong Zhang } 2395fa213d2fSHong Zhang } 2396fa213d2fSHong Zhang 2397fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 23989371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 23999371c9d4SSatish Balay offdiagA[r] = *ba; 24009371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24019371c9d4SSatish Balay } 24029371c9d4SSatish Balay ba++; 24039371c9d4SSatish Balay bj++; 2404fa213d2fSHong Zhang } 2405fa213d2fSHong Zhang } 2406fa213d2fSHong Zhang 24079566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2409fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2410fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 241103bc72f1SMatthew Knepley a[r] = diagA[r]; 2412fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2413fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2414fa213d2fSHong Zhang a[r] = diagA[r]; 2415fa213d2fSHong Zhang if (idx) { 2416fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 241703bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2418fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2419fa213d2fSHong Zhang } 242003bc72f1SMatthew Knepley } else { 242103bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2422fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 242303bc72f1SMatthew Knepley } 242403bc72f1SMatthew Knepley } 24259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24309566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24319566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243303bc72f1SMatthew Knepley } 243403bc72f1SMatthew Knepley 2435ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2436d71ae5a4SJacob Faibussowitsch { 2437c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24381a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24391a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2440c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2441c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2442c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2443ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2444ce496241SStefano Zampini const PetscScalar *ba, *bav; 24451a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24461a254869SHong Zhang Mat B = mat->B; 24471a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2448c87e5d42SMatthew Knepley 2449c87e5d42SMatthew Knepley PetscFunctionBegin; 24501a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24511a254869SHong Zhang if (A->cmap->N == n) { 24529566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24539566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24549566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24581a254869SHong Zhang } else if (n == 0) { 24591a254869SHong Zhang if (m) { 24609566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24619371c9d4SSatish Balay for (r = 0; r < m; r++) { 24629371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24639371c9d4SSatish Balay if (idx) idx[r] = -1; 24649371c9d4SSatish Balay } 24659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24661a254869SHong Zhang } 24673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24681a254869SHong Zhang } 24691a254869SHong Zhang 24709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24729566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24739566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24741a254869SHong Zhang 24751a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2477ce496241SStefano Zampini ba = bav; 24781a254869SHong Zhang bi = b->i; 24791a254869SHong Zhang bj = b->j; 24809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24811a254869SHong Zhang for (r = 0; r < m; r++) { 24821a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24831a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24849371c9d4SSatish Balay offdiagA[r] = *ba; 24859371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24861a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24871a254869SHong Zhang offdiagA[r] = 0.0; 24881a254869SHong Zhang 24891a254869SHong Zhang /* Find first hole in the cmap */ 24901a254869SHong Zhang for (j = 0; j < ncols; j++) { 24911a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 24921a254869SHong Zhang if (col > j && j < cstart) { 24931a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 24941a254869SHong Zhang break; 24951a254869SHong Zhang } else if (col > j + n && j >= cstart) { 24961a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 24971a254869SHong Zhang break; 24981a254869SHong Zhang } 24991a254869SHong Zhang } 25004e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25011a254869SHong Zhang /* a hole is outside compressed Bcols */ 25021a254869SHong Zhang if (ncols == 0) { 25031a254869SHong Zhang if (cstart) { 25041a254869SHong Zhang offdiagIdx[r] = 0; 25051a254869SHong Zhang } else offdiagIdx[r] = cend; 25061a254869SHong Zhang } else { /* ncols > 0 */ 25071a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25081a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25091a254869SHong Zhang } 25101a254869SHong Zhang } 25111a254869SHong Zhang } 25121a254869SHong Zhang 25131a254869SHong Zhang for (j = 0; j < ncols; j++) { 25149371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25159371c9d4SSatish Balay offdiagA[r] = *ba; 25169371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25179371c9d4SSatish Balay } 25189371c9d4SSatish Balay ba++; 25199371c9d4SSatish Balay bj++; 25201a254869SHong Zhang } 25211a254869SHong Zhang } 25221a254869SHong Zhang 25239566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25251a254869SHong Zhang for (r = 0; r < m; ++r) { 25261a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2527c87e5d42SMatthew Knepley a[r] = diagA[r]; 25281a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25291a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25301a254869SHong Zhang a[r] = diagA[r]; 25311a254869SHong Zhang if (idx) { 25321a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2533c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25341a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25351a254869SHong Zhang } 2536c87e5d42SMatthew Knepley } else { 2537c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25381a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2539c87e5d42SMatthew Knepley } 2540c87e5d42SMatthew Knepley } 25419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25479566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2549c87e5d42SMatthew Knepley } 2550c87e5d42SMatthew Knepley 2551d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2552d71ae5a4SJacob Faibussowitsch { 2553f6d58c54SBarry Smith Mat *dummy; 25545494a064SHong Zhang 25555494a064SHong Zhang PetscFunctionBegin; 25569566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2557f6d58c54SBarry Smith *newmat = *dummy; 25589566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25605494a064SHong Zhang } 25615494a064SHong Zhang 2562ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2563d71ae5a4SJacob Faibussowitsch { 2564bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2565bbead8a2SBarry Smith 2566bbead8a2SBarry Smith PetscFunctionBegin; 25679566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25687b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2570bbead8a2SBarry Smith } 2571bbead8a2SBarry Smith 2572d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2573d71ae5a4SJacob Faibussowitsch { 257473a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 257573a71a0fSBarry Smith 257673a71a0fSBarry Smith PetscFunctionBegin; 257708401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25789566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2579679944adSJunchao Zhang if (x->assembled) { 25809566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2581679944adSJunchao Zhang } else { 25829566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2583679944adSJunchao Zhang } 25849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 258773a71a0fSBarry Smith } 2588bbead8a2SBarry Smith 2589ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2590d71ae5a4SJacob Faibussowitsch { 2591b1b1104fSBarry Smith PetscFunctionBegin; 2592b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2593b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 25943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2595b1b1104fSBarry Smith } 2596b1b1104fSBarry Smith 2597b1b1104fSBarry Smith /*@ 2598f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2599f2afee66SBarry Smith 26002ef1f0ffSBarry Smith Not Collective 2601f2afee66SBarry Smith 2602f2afee66SBarry Smith Input Parameter: 2603f2afee66SBarry Smith . A - the matrix 2604f2afee66SBarry Smith 2605f2afee66SBarry Smith Output Parameter: 2606f2afee66SBarry Smith . nz - the number of nonzeros 2607f2afee66SBarry Smith 2608f2afee66SBarry Smith Level: advanced 2609f2afee66SBarry Smith 2610fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2611f2afee66SBarry Smith @*/ 2612d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2613d71ae5a4SJacob Faibussowitsch { 2614f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2615f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2616dfebb78cSStefano Zampini PetscBool isaij; 2617f2afee66SBarry Smith 2618f2afee66SBarry Smith PetscFunctionBegin; 2619dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2620dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2621f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2623f2afee66SBarry Smith } 2624f2afee66SBarry Smith 2625f2afee66SBarry Smith /*@ 2626b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2627b1b1104fSBarry Smith 2628c3339decSBarry Smith Collective 2629b1b1104fSBarry Smith 2630b1b1104fSBarry Smith Input Parameters: 2631b1b1104fSBarry Smith + A - the matrix 263211a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2633b1b1104fSBarry Smith 263496a0c994SBarry Smith Level: advanced 263596a0c994SBarry Smith 2636fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2637b1b1104fSBarry Smith @*/ 2638d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2639d71ae5a4SJacob Faibussowitsch { 2640b1b1104fSBarry Smith PetscFunctionBegin; 2641cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2643b1b1104fSBarry Smith } 2644b1b1104fSBarry Smith 2645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2646d71ae5a4SJacob Faibussowitsch { 2647b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2648b1b1104fSBarry Smith 2649b1b1104fSBarry Smith PetscFunctionBegin; 2650d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2651b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26529566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26531baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2654d0609cedSBarry Smith PetscOptionsHeadEnd(); 26553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2656b1b1104fSBarry Smith } 2657b1b1104fSBarry Smith 2658ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2659d71ae5a4SJacob Faibussowitsch { 26607d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2661c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26627d68702bSBarry Smith 26637d68702bSBarry Smith PetscFunctionBegin; 2664c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26659566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26665519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2667b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2669b83222d8SBarry Smith aij->nonew = nonew; 26707d68702bSBarry Smith } 26719566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26737d68702bSBarry Smith } 26747d68702bSBarry Smith 2675ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2676d71ae5a4SJacob Faibussowitsch { 26773b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26783b49f96aSBarry Smith 26793b49f96aSBarry Smith PetscFunctionBegin; 268008401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26819566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26823b49f96aSBarry Smith if (d) { 26833b49f96aSBarry Smith PetscInt rstart; 26849566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26853b49f96aSBarry Smith *d += rstart; 26863b49f96aSBarry Smith } 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26883b49f96aSBarry Smith } 26893b49f96aSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2691d71ae5a4SJacob Faibussowitsch { 2692a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2693a8ee9fb5SBarry Smith 2694a8ee9fb5SBarry Smith PetscFunctionBegin; 26959566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 26963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2697a8ee9fb5SBarry Smith } 26983b49f96aSBarry Smith 269958c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2700dec0b466SHong Zhang { 2701dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2702dec0b466SHong Zhang 2703dec0b466SHong Zhang PetscFunctionBegin; 270458c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 270558c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2707dec0b466SHong Zhang } 2708dec0b466SHong Zhang 2709cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2710cda55fadSBarry Smith MatGetRow_MPIAIJ, 2711cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2712cda55fadSBarry Smith MatMult_MPIAIJ, 271397304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27147c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27157c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2716f4259b30SLisandro Dalcin NULL, 2717f4259b30SLisandro Dalcin NULL, 2718f4259b30SLisandro Dalcin NULL, 2719f4259b30SLisandro Dalcin /*10*/ NULL, 2720f4259b30SLisandro Dalcin NULL, 2721f4259b30SLisandro Dalcin NULL, 272241f059aeSBarry Smith MatSOR_MPIAIJ, 2723b7c46309SBarry Smith MatTranspose_MPIAIJ, 272497304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2725cda55fadSBarry Smith MatEqual_MPIAIJ, 2726cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2727cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2728cda55fadSBarry Smith MatNorm_MPIAIJ, 272997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2730cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2731cda55fadSBarry Smith MatSetOption_MPIAIJ, 2732cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2733d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2734f4259b30SLisandro Dalcin NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 2737f4259b30SLisandro Dalcin NULL, 273826cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2739f4259b30SLisandro Dalcin NULL, 2740f4259b30SLisandro Dalcin NULL, 2741a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2742f4259b30SLisandro Dalcin NULL, 2743d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 2746f4259b30SLisandro Dalcin NULL, 2747f4259b30SLisandro Dalcin NULL, 2748d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27497dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2750cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2751cda55fadSBarry Smith MatGetValues_MPIAIJ, 2752cb5b572fSBarry Smith MatCopy_MPIAIJ, 2753d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2754cda55fadSBarry Smith MatScale_MPIAIJ, 27557d68702bSBarry Smith MatShift_MPIAIJ, 275699e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2757564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 275873a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27598a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27608a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 276393dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2764f4259b30SLisandro Dalcin NULL, 2765cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 276672e6a0cfSJed Brown MatPermute_MPIAIJ, 2767f4259b30SLisandro Dalcin NULL, 27687dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2769e03a110bSBarry Smith MatDestroy_MPIAIJ, 2770e03a110bSBarry Smith MatView_MPIAIJ, 2771f4259b30SLisandro Dalcin NULL, 2772f4259b30SLisandro Dalcin NULL, 2773f4259b30SLisandro Dalcin /*64*/ NULL, 2774f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2775f4259b30SLisandro Dalcin NULL, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 2778d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2779c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 2782f4259b30SLisandro Dalcin NULL, 2783f4259b30SLisandro Dalcin NULL, 27843acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2785b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2789f4259b30SLisandro Dalcin /*80*/ NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 27925bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 2793a3bbdb47SHong Zhang MatIsSymmetric_MPIAIJ, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin /*89*/ NULL, 2799f4259b30SLisandro Dalcin NULL, 280026be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 2807b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28084222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 28112fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2812f4259b30SLisandro Dalcin NULL, 2813d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 281499cafbc1SBarry Smith MatRealPart_MPIAIJ, 281569db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818f4259b30SLisandro Dalcin /*109*/ NULL, 2819f4259b30SLisandro Dalcin NULL, 28205494a064SHong Zhang MatGetRowMin_MPIAIJ, 2821f4259b30SLisandro Dalcin NULL, 28223b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2823d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2826f4259b30SLisandro Dalcin NULL, 2827f4259b30SLisandro Dalcin NULL, 2828b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2829f4259b30SLisandro Dalcin NULL, 2830f4259b30SLisandro Dalcin NULL, 2831f4259b30SLisandro Dalcin NULL, 2832b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2833f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2834a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2835bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2836a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28377dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2838f4259b30SLisandro Dalcin /*129*/ NULL, 2839f4259b30SLisandro Dalcin NULL, 2840f4259b30SLisandro Dalcin NULL, 2841187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2842f4259b30SLisandro Dalcin NULL, 2843f4259b30SLisandro Dalcin /*134*/ NULL, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847f4259b30SLisandro Dalcin NULL, 284846533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 28519c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2852a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28534222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2854f4259b30SLisandro Dalcin /*145*/ NULL, 2855f4259b30SLisandro Dalcin NULL, 285672833a62Smarkadams4 NULL, 285772833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28582d776b49SBarry Smith NULL, 2859dec0b466SHong Zhang /*150*/ NULL, 2860dec0b466SHong Zhang MatEliminateZeros_MPIAIJ}; 286136ce4990SBarry Smith 2862ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2863d71ae5a4SJacob Faibussowitsch { 28642e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28652e8a6d31SBarry Smith 28662e8a6d31SBarry Smith PetscFunctionBegin; 28679566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28689566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28702e8a6d31SBarry Smith } 28712e8a6d31SBarry Smith 2872ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2873d71ae5a4SJacob Faibussowitsch { 28742e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28752e8a6d31SBarry Smith 28762e8a6d31SBarry Smith PetscFunctionBegin; 28779566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28789566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28802e8a6d31SBarry Smith } 28818a729477SBarry Smith 2882d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2883d71ae5a4SJacob Faibussowitsch { 2884ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28855d2a9ed1SStefano Zampini PetscMPIInt size; 2886a23d5eceSKris Buschelman 2887a23d5eceSKris Buschelman PetscFunctionBegin; 2888ad79cf63SBarry Smith if (B->hash_active) { 2889aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2890ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2891ad79cf63SBarry Smith } 28929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2894899cda47SBarry Smith 2895cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2896eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2897cb7b82ddSBarry Smith #else 28989566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2899cb7b82ddSBarry Smith #endif 29009566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29019566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29029566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2903cb7b82ddSBarry Smith 29049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 29059566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29069566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29089566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29099566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2910cb7b82ddSBarry Smith 2911ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29129566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29149566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2916899cda47SBarry Smith 29179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2919526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2920cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 292115001458SStefano Zampini B->assembled = PETSC_FALSE; 29223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2923a23d5eceSKris Buschelman } 2924a23d5eceSKris Buschelman 2925ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2926d71ae5a4SJacob Faibussowitsch { 2927ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2928846b4da1SFande Kong 2929846b4da1SFande Kong PetscFunctionBegin; 2930846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2933846b4da1SFande Kong 2934846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2935eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2936846b4da1SFande Kong #else 29379566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2938846b4da1SFande Kong #endif 29399566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29419566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2942846b4da1SFande Kong 29439566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29449566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2945846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2946846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2947846b4da1SFande Kong B->assembled = PETSC_FALSE; 29483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2949846b4da1SFande Kong } 2950846b4da1SFande Kong 2951d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2952d71ae5a4SJacob Faibussowitsch { 2953d6dfbf8fSBarry Smith Mat mat; 2954416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2955d6dfbf8fSBarry Smith 29563a40ed3dSBarry Smith PetscFunctionBegin; 2957f4259b30SLisandro Dalcin *newmat = NULL; 29589566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29609566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29619566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2962273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2963e1b6402fSHong Zhang 2964d5f3da31SBarry Smith mat->factortype = matin->factortype; 2965501880eeSStefano Zampini mat->assembled = matin->assembled; 2966e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2967d6dfbf8fSBarry Smith 296817699dbbSLois Curfman McInnes a->size = oldmat->size; 296917699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2970e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2971e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2972501880eeSStefano Zampini a->rowindices = NULL; 2973501880eeSStefano Zampini a->rowvalues = NULL; 2974bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2975d6dfbf8fSBarry Smith 29769566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29779566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2978420957c1SBarry Smith if (matin->hash_active) { 2979420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2980420957c1SBarry Smith } else { 2981420957c1SBarry Smith mat->preallocated = matin->preallocated; 29822ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2983aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2984eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2985b1fc9764SSatish Balay #else 29869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 29879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 2988b1fc9764SSatish Balay #endif 2989501880eeSStefano Zampini } else a->colmap = NULL; 29903f41c07dSBarry Smith if (oldmat->garray) { 2991b1d57f15SBarry Smith PetscInt len; 2992d0f46423SBarry Smith len = oldmat->B->cmap->n; 29939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 29949566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2995501880eeSStefano Zampini } else a->garray = NULL; 2996d6dfbf8fSBarry Smith 29970de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 29980de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 29990de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3000aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3001aa624791SPierre Jolivet if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 30029566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30039566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3004420957c1SBarry Smith } 30059566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30068a729477SBarry Smith *newmat = mat; 30073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30088a729477SBarry Smith } 3009416022c9SBarry Smith 3010d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3011d71ae5a4SJacob Faibussowitsch { 301252f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 301352f91c60SVaclav Hapla 301452f91c60SVaclav Hapla PetscFunctionBegin; 301552f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 301652f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3017c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30189566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 302152f91c60SVaclav Hapla if (isbinary) { 30229566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 302352f91c60SVaclav Hapla } else if (ishdf5) { 302452f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30259566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 302652f91c60SVaclav Hapla #else 302752f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 302852f91c60SVaclav Hapla #endif 302952f91c60SVaclav Hapla } else { 303098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 303152f91c60SVaclav Hapla } 30323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 303352f91c60SVaclav Hapla } 303452f91c60SVaclav Hapla 3035d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3036d71ae5a4SJacob Faibussowitsch { 30373ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30383ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30393ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30408fb81238SShri Abhyankar 30418fb81238SShri Abhyankar PetscFunctionBegin; 30429566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30438fb81238SShri Abhyankar 30443ea6fe3dSLisandro Dalcin /* read in matrix header */ 30459566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 304608401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30479371c9d4SSatish Balay M = header[1]; 30489371c9d4SSatish Balay N = header[2]; 30499371c9d4SSatish Balay nz = header[3]; 305008401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 305108401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 305208401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 305308ea439dSMark F. Adams 30543ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30559566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30563ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30573ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30583ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30618fb81238SShri Abhyankar 30623ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30639566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3064aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30658fb81238SShri Abhyankar 30663ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30679566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30709371c9d4SSatish Balay rowidxs[0] = 0; 30719371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 307238b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 307408401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 307538b83642SBarry Smith } 307638b83642SBarry Smith 30773ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30799566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30809566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30813ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30829566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30839566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30849566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30868fb81238SShri Abhyankar } 30878fb81238SShri Abhyankar 30883782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3089ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3090d71ae5a4SJacob Faibussowitsch { 30914aa3045dSJed Brown IS iscol_local; 3092c5e4d11fSDmitry Karpeev PetscBool isstride; 3093c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 30943782ecc7SHong Zhang 30953782ecc7SHong Zhang PetscFunctionBegin; 30963782ecc7SHong Zhang /* check if we are grabbing all columns*/ 30979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 30983782ecc7SHong Zhang 3099c5e4d11fSDmitry Karpeev if (isstride) { 3100c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31019566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31039566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3104c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3105c5e4d11fSDmitry Karpeev } 31063782ecc7SHong Zhang 31071c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3108c5e4d11fSDmitry Karpeev if (gisstride) { 3109c5e4d11fSDmitry Karpeev PetscInt N; 31109566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31119566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31129566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3114c5e4d11fSDmitry Karpeev } else { 3115c5bfad50SMark F. Adams PetscInt cbs; 31169566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31179566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31189566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3119b79d0421SJed Brown } 31203782ecc7SHong Zhang 31213782ecc7SHong Zhang *isseq = iscol_local; 31223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3123c5e4d11fSDmitry Karpeev } 31248d2139bdSHong Zhang 3125ddfdf956SHong Zhang /* 31269c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31279c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3128ddfdf956SHong Zhang 3129ddfdf956SHong Zhang Input Parameters: 313027430b45SBarry Smith + mat - matrix 313127430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31329c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 313327430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3134ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 313527430b45SBarry Smith 313627430b45SBarry Smith Output Parameters: 313727430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 313827430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 313927430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 314027430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3141ddfdf956SHong Zhang */ 3142ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3143d71ae5a4SJacob Faibussowitsch { 3144040216a4SHong Zhang Vec x, cmap; 3145040216a4SHong Zhang const PetscInt *is_idx; 3146040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31479c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3148040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3149040216a4SHong Zhang Mat B = a->B; 3150040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3151a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31528b3fa1f7SHong Zhang MPI_Comm comm; 31533a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31543782ecc7SHong Zhang 31553782ecc7SHong Zhang PetscFunctionBegin; 31569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31588b3fa1f7SHong Zhang 3159ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31609566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31619566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31629566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31639566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31640a351717SHong Zhang 31659c988bcaSHong Zhang /* Get start indices */ 31669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3167ddfdf956SHong Zhang isstart -= ncols; 31689566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3169040216a4SHong Zhang 31709566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31719566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31729566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3174ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31758b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3176ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31779c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31788b3fa1f7SHong Zhang } 31799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31828b3fa1f7SHong Zhang 31839c988bcaSHong Zhang /* Get iscol_d */ 31849566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31859566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 31869566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3187feb78a15SHong Zhang 31889c988bcaSHong Zhang /* Get isrow_d */ 31899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3190feb78a15SHong Zhang rstart = mat->rmap->rstart; 31919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 31929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 31939c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 31949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3195feb78a15SHong Zhang 31969566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 31979566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 31989566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3199feb78a15SHong Zhang 32009c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32019566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3203ddfdf956SHong Zhang 32049566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 320507250d77SHong Zhang 32069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 320864efcef9SHong Zhang 32099c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3210ddfdf956SHong Zhang /* off-process column indices */ 32119c988bcaSHong Zhang count = 0; 32129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3214feb78a15SHong Zhang 32159566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32169566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32178b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3218f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32199c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32201c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32211c645242SHong Zhang count++; 32228b3fa1f7SHong Zhang } 32238b3fa1f7SHong Zhang } 32249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 322607250d77SHong Zhang 32279566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3228b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3229b6d9b4e0SHong Zhang 32309566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32319c988bcaSHong Zhang *garray = cmap1; 32329c988bcaSHong Zhang 32339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3237040216a4SHong Zhang } 3238040216a4SHong Zhang 3239b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3241d71ae5a4SJacob Faibussowitsch { 3242b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32431fd43edeSHong Zhang Mat M = NULL; 32443b00a383SHong Zhang MPI_Comm comm; 3245b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32463b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3247b20e2604SHong Zhang PetscInt n; 32483b00a383SHong Zhang 32493b00a383SHong Zhang PetscFunctionBegin; 32509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32513b00a383SHong Zhang 32523b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3253b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32549566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 325528b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32563b00a383SHong Zhang 32579566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 325828b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32593b00a383SHong Zhang 32609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 326128b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32623b00a383SHong Zhang 3263b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3264b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32659566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 326748a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32703b00a383SHong Zhang 32713b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32729c988bcaSHong Zhang const PetscInt *garray; 3273b20e2604SHong Zhang PetscInt BsubN; 32743b00a383SHong Zhang 3275b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32769566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32773b00a383SHong Zhang 3278b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32799566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32809566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32813b00a383SHong Zhang 32829c988bcaSHong Zhang /* Create submatrix M */ 32839566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 32843b00a383SHong Zhang 3285b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3286b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 32877cfce09cSHong Zhang 32889566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3289b20e2604SHong Zhang n = asub->B->cmap->N; 3290b20e2604SHong Zhang if (BsubN > n) { 3291c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 32927cfce09cSHong Zhang const PetscInt *idx; 32939c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 32949566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 32957cfce09cSHong Zhang 32969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 32977cfce09cSHong Zhang j = 0; 32989566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3299b20e2604SHong Zhang for (i = 0; i < n; i++) { 33007cfce09cSHong Zhang if (j >= BsubN) break; 33019c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33027cfce09cSHong Zhang 33039c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33047cfce09cSHong Zhang idx_new[i] = idx[j++]; 330598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33067cfce09cSHong Zhang } 33079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33087cfce09cSHong Zhang 33099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33117cfce09cSHong Zhang 3312b20e2604SHong Zhang } else if (BsubN < n) { 331398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3314b20e2604SHong Zhang } 33157cfce09cSHong Zhang 33169566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3317b20e2604SHong Zhang *submat = M; 33183b00a383SHong Zhang 3319e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33209566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33223b00a383SHong Zhang 33239566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33253b00a383SHong Zhang 33269566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33283b00a383SHong Zhang } 33293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33303b00a383SHong Zhang } 33313b00a383SHong Zhang 3332d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3333d71ae5a4SJacob Faibussowitsch { 33341358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33353782ecc7SHong Zhang PetscInt csize; 333618e627e3SHong Zhang PetscInt n, i, j, start, end; 33374a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33383782ecc7SHong Zhang MPI_Comm comm; 33393782ecc7SHong Zhang 33403782ecc7SHong Zhang PetscFunctionBegin; 3341bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3342a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33438f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3345d5761cdaSHong Zhang if (isrow_d) { 3346d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3347d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3348d5761cdaSHong Zhang } else { 33499566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3350d5761cdaSHong Zhang if (iscol_local) { 3351d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3352d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3353d5761cdaSHong Zhang } 3354d5761cdaSHong Zhang } 33558f69fa7bSHong Zhang } else { 3356e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 335718e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33593782ecc7SHong Zhang if (!n) { 336018e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33613782ecc7SHong Zhang } else { 33629566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33639566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3364ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33658f69fa7bSHong Zhang } 33663782ecc7SHong Zhang 3367e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 336818e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33699566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 337018e627e3SHong Zhang if (!n) { 337118e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 337218e627e3SHong Zhang } else { 33739566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 337518e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 337618e627e3SHong Zhang } 337718e627e3SHong Zhang 33789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 338018e627e3SHong Zhang sameRowDist = tsameDist[0]; 338118e627e3SHong Zhang } 338218e627e3SHong Zhang 338318e627e3SHong Zhang if (sameRowDist) { 3384b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33853b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 33869566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 33873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3388b20e2604SHong Zhang } else { /* sameRowDist */ 33893b00a383SHong Zhang /* isrow has same processor distribution as mat */ 33901358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 33911358a193SHong Zhang PetscBool sorted; 33929566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 33939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 33949566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 339508401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 33961358a193SHong Zhang 33979566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 33981358a193SHong Zhang if (sorted) { 33991358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34009566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34023782ecc7SHong Zhang } 34031358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 340448c0d076SHong Zhang IS iscol_sub; 34059566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 340648c0d076SHong Zhang if (iscol_sub) { 34079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 340948c0d076SHong Zhang } 34101358a193SHong Zhang } 34111358a193SHong Zhang } 34121358a193SHong Zhang } 34133782ecc7SHong Zhang 3414bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34153782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34169566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 341728b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34183782ecc7SHong Zhang } else { 341948a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34201358a193SHong Zhang } 34213782ecc7SHong Zhang 34229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34248f69fa7bSHong Zhang 3425b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34269566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3428b79d0421SJed Brown } 34293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34304aa3045dSJed Brown } 34314aa3045dSJed Brown 3432feb78a15SHong Zhang /*@C 343311a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3434feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3435feb78a15SHong Zhang 3436d083f849SBarry Smith Collective 3437feb78a15SHong Zhang 3438feb78a15SHong Zhang Input Parameters: 3439feb78a15SHong Zhang + comm - MPI communicator 3440feb78a15SHong Zhang . A - "diagonal" portion of matrix 3441b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34422ef1f0ffSBarry Smith - garray - global index of `B` columns 3443feb78a15SHong Zhang 3444feb78a15SHong Zhang Output Parameter: 34452ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 344627430b45SBarry Smith 3447feb78a15SHong Zhang Level: advanced 3448feb78a15SHong Zhang 3449feb78a15SHong Zhang Notes: 345011a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 345111a5261eSBarry Smith 34522ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3453feb78a15SHong Zhang 34541cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3455feb78a15SHong Zhang @*/ 3456d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3457d71ae5a4SJacob Faibussowitsch { 3458feb78a15SHong Zhang Mat_MPIAIJ *maij; 3459e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3460a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3461ce496241SStefano Zampini const PetscScalar *oa; 3462e489de8fSHong Zhang Mat Bnew; 3463feb78a15SHong Zhang PetscInt m, n, N; 34644ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3465feb78a15SHong Zhang 3466feb78a15SHong Zhang PetscFunctionBegin; 34679566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34689566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 346908401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 347037a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3471b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 347208401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3473feb78a15SHong Zhang 3474e489de8fSHong Zhang /* Get global columns of mat */ 34751c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3476feb78a15SHong Zhang 34779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34784ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34794ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34804ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34814ab4d6f4SRichard Tran Mills 348237a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3483feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3484feb78a15SHong Zhang 3485feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3486feb78a15SHong Zhang 34879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 34889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3489feb78a15SHong Zhang 3490e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3491feb78a15SHong Zhang maij->A = A; 3492feb78a15SHong Zhang 3493a5348796SHong Zhang nz = oi[m]; 3494a5348796SHong Zhang for (i = 0; i < nz; i++) { 3495a5348796SHong Zhang col = oj[i]; 3496a5348796SHong Zhang oj[i] = garray[col]; 3497feb78a15SHong Zhang } 3498feb78a15SHong Zhang 3499e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35019566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3503e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3504e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3505e489de8fSHong Zhang maij->B = Bnew; 3506d5761cdaSHong Zhang 350708401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3508d5761cdaSHong Zhang 3509e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3510d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3511d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3513d5761cdaSHong Zhang 3514e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3515e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3516e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3517feb78a15SHong Zhang 3518a5348796SHong Zhang /* condense columns of maij->B */ 35199566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35229566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35239566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3525feb78a15SHong Zhang } 3526feb78a15SHong Zhang 3527ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35284aa3045dSJed Brown 3529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3530d71ae5a4SJacob Faibussowitsch { 353198b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 353285f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 353398b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35341fd43edeSHong Zhang Mat M, Msub, B = a->B; 353598b658c4SHong Zhang MatScalar *aa; 353600e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3537a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 353898b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 353998b658c4SHong Zhang IS iscol_sub, iscmap; 354098b658c4SHong Zhang const PetscInt *is_idx, *cmap; 354118e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3542a31a438cSHong Zhang MPI_Comm comm; 35437e2c5f70SBarry Smith 3544a0ff6018SBarry Smith PetscFunctionBegin; 35459566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3546d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35479566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 354828b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3550d5761cdaSHong Zhang 35519566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 355228b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3553d5761cdaSHong Zhang 35549566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 355528b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3556d5761cdaSHong Zhang 35579566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3558d5761cdaSHong Zhang 3559d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35603b00a383SHong Zhang PetscBool flg; 35613b00a383SHong Zhang 35629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35639566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3564bcae8d28SHong Zhang 35653b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3566366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35679566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3568366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35691c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3570366a327dSHong Zhang if (allcolumns) { 3571366a327dSHong Zhang iscol_sub = iscol_local; 35729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35739566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3574366a327dSHong Zhang 35753b00a383SHong Zhang } else { 35761358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3577244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35818d2139bdSHong Zhang count = 0; 3582a31a438cSHong Zhang k = 0; 3583a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3584a31a438cSHong Zhang j = is_idx[i]; 3585a31a438cSHong Zhang if (j >= cstart && j < cend) { 3586a31a438cSHong Zhang /* diagonal part of mat */ 35878d2139bdSHong Zhang idx[count] = j; 3588366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 35894a3daf6eSHong Zhang } else if (Bn) { 3590a31a438cSHong Zhang /* off-diagonal part of mat */ 3591a31a438cSHong Zhang if (j == garray[k]) { 35928d2139bdSHong Zhang idx[count] = j; 3593a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3594a31a438cSHong Zhang } else if (j > garray[k]) { 3595a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3596a31a438cSHong Zhang if (j == garray[k]) { 3597a31a438cSHong Zhang idx[count] = j; 3598a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 35998d2139bdSHong Zhang } 36008d2139bdSHong Zhang } 36018d2139bdSHong Zhang } 36028d2139bdSHong Zhang } 36039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36048d2139bdSHong Zhang 36059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36069566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36079566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3608b6d9b4e0SHong Zhang 36099566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3610a31a438cSHong Zhang } 36118b3fa1f7SHong Zhang 36123b00a383SHong Zhang /* (3) Create sequential Msub */ 36139566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3614d5761cdaSHong Zhang } 36158d2139bdSHong Zhang 36169566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 361798b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 361898b658c4SHong Zhang ii = aij->i; 36199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3620a0ff6018SBarry Smith 3621a0ff6018SBarry Smith /* 3622a0ff6018SBarry Smith m - number of local rows 3623a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3624a0ff6018SBarry Smith rstart - first row in new global matrix generated 3625a0ff6018SBarry Smith */ 36269566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 362798b658c4SHong Zhang 36283b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36293b00a383SHong Zhang /* (4) Create parallel newmat */ 363098b658c4SHong Zhang PetscMPIInt rank, size; 3631bcae8d28SHong Zhang PetscInt csize; 363298b658c4SHong Zhang 36339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 363500e6dbe6SBarry Smith 3636a0ff6018SBarry Smith /* 363700e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 363800e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3639a0ff6018SBarry Smith */ 364000e6dbe6SBarry Smith 364100e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36429566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36436a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36449566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3645a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3646e2c4fddaSBarry Smith nlocal = m; 36476a6a5d1dSBarry Smith } else { 3648a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3649ab50ec6bSBarry Smith } 3650ab50ec6bSBarry Smith } else { 36516a6a5d1dSBarry Smith nlocal = csize; 36526a6a5d1dSBarry Smith } 36539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 365400e6dbe6SBarry Smith rstart = rend - nlocal; 3655aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 365600e6dbe6SBarry Smith 365700e6dbe6SBarry Smith /* next, compute all the lengths */ 365898b658c4SHong Zhang jj = aij->j; 36599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 366000e6dbe6SBarry Smith olens = dlens + m; 366100e6dbe6SBarry Smith for (i = 0; i < m; i++) { 366200e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 366300e6dbe6SBarry Smith olen = 0; 366400e6dbe6SBarry Smith dlen = 0; 366500e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 366615b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 366700e6dbe6SBarry Smith else dlen++; 366800e6dbe6SBarry Smith jj++; 366900e6dbe6SBarry Smith } 367000e6dbe6SBarry Smith olens[i] = olen; 367100e6dbe6SBarry Smith dlens[i] = dlen; 367200e6dbe6SBarry Smith } 3673b6d9b4e0SHong Zhang 36749566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36759566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 367698b658c4SHong Zhang 36779566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36799566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36809566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36819566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36829566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3683d5761cdaSHong Zhang 3684d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3685a0ff6018SBarry Smith M = *newmat; 36869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 368708401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36889566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3689c48de900SBarry Smith /* 3690c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3691c48de900SBarry Smith rather than the slower MatSetValues(). 3692c48de900SBarry Smith */ 3693c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3694c48de900SBarry Smith M->assembled = PETSC_FALSE; 3695a0ff6018SBarry Smith } 3696548ecf4dSHong Zhang 36973b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 36989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 36999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 370098b658c4SHong Zhang 370198b658c4SHong Zhang jj = aij->j; 37029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3703a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3704a0ff6018SBarry Smith row = rstart + i; 370500e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 370615b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37079566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37089371c9d4SSatish Balay jj += nz; 37099371c9d4SSatish Balay aa += nz; 3710a0ff6018SBarry Smith } 37119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3713a0ff6018SBarry Smith 37149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3716fee21e36SBarry Smith 37179566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 371898b658c4SHong Zhang 371998b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3720fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37213b00a383SHong Zhang *newmat = M; 37229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub)); 37239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 372498b658c4SHong Zhang 37259566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub)); 37269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 372798b658c4SHong Zhang 37289566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap)); 37299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3730bcae8d28SHong Zhang 3731bcae8d28SHong Zhang if (iscol_local) { 37329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local)); 37339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3734bcae8d28SHong Zhang } 373598b658c4SHong Zhang } 37363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3737a0ff6018SBarry Smith } 3738273d9f13SBarry Smith 3739df40acb1SHong Zhang /* 3740df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3741df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3742df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3743df40acb1SHong Zhang 374411a5261eSBarry Smith This requires a sequential iscol with all indices. 3745df40acb1SHong Zhang */ 3746d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3747d71ae5a4SJacob Faibussowitsch { 3748df40acb1SHong Zhang PetscMPIInt rank, size; 3749df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3750df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3751df40acb1SHong Zhang Mat M, Mreuse; 375298b658c4SHong Zhang MatScalar *aa, *vwork; 3753df40acb1SHong Zhang MPI_Comm comm; 3754df40acb1SHong Zhang Mat_SeqAIJ *aij; 37550b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3756df40acb1SHong Zhang 3757df40acb1SHong Zhang PetscFunctionBegin; 37589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3761df40acb1SHong Zhang 37620b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37639566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37649566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37650b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37670b27a90eSHong Zhang 3768df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 377028b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3772df40acb1SHong Zhang } else { 37739566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3774df40acb1SHong Zhang } 3775df40acb1SHong Zhang 3776df40acb1SHong Zhang /* 3777df40acb1SHong Zhang m - number of local rows 3778df40acb1SHong Zhang n - number of columns (same on all processors) 3779df40acb1SHong Zhang rstart - first row in new global matrix generated 3780df40acb1SHong Zhang */ 37819566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37829566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3783df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3784df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3785df40acb1SHong Zhang ii = aij->i; 3786df40acb1SHong Zhang jj = aij->j; 3787df40acb1SHong Zhang 3788df40acb1SHong Zhang /* 3789df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3790df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3791df40acb1SHong Zhang */ 3792df40acb1SHong Zhang 3793df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3794df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 37959566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3796df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3797df40acb1SHong Zhang nlocal = m; 3798df40acb1SHong Zhang } else { 3799df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3800df40acb1SHong Zhang } 3801df40acb1SHong Zhang } else { 3802df40acb1SHong Zhang nlocal = csize; 3803df40acb1SHong Zhang } 38049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3805df40acb1SHong Zhang rstart = rend - nlocal; 3806aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3807df40acb1SHong Zhang 3808df40acb1SHong Zhang /* next, compute all the lengths */ 38099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3810df40acb1SHong Zhang olens = dlens + m; 3811df40acb1SHong Zhang for (i = 0; i < m; i++) { 3812df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3813df40acb1SHong Zhang olen = 0; 3814df40acb1SHong Zhang dlen = 0; 3815df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3816df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3817df40acb1SHong Zhang else dlen++; 3818df40acb1SHong Zhang jj++; 3819df40acb1SHong Zhang } 3820df40acb1SHong Zhang olens[i] = olen; 3821df40acb1SHong Zhang dlens[i] = dlen; 3822df40acb1SHong Zhang } 38239566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38269566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38289566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3829df40acb1SHong Zhang } else { 3830df40acb1SHong Zhang PetscInt ml, nl; 3831df40acb1SHong Zhang 3832df40acb1SHong Zhang M = *newmat; 38339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 383408401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38359566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3836df40acb1SHong Zhang /* 3837df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3838df40acb1SHong Zhang rather than the slower MatSetValues(). 3839df40acb1SHong Zhang */ 3840df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3841df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3842df40acb1SHong Zhang } 38439566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3844df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3845df40acb1SHong Zhang ii = aij->i; 3846df40acb1SHong Zhang jj = aij->j; 38472e5835c6SStefano Zampini 38482e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3850df40acb1SHong Zhang for (i = 0; i < m; i++) { 3851df40acb1SHong Zhang row = rstart + i; 3852df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38539371c9d4SSatish Balay cwork = jj; 3854*8e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38559371c9d4SSatish Balay vwork = aa; 3856*8e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38579566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3858df40acb1SHong Zhang } 38599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3860df40acb1SHong Zhang 38619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3863df40acb1SHong Zhang *newmat = M; 3864df40acb1SHong Zhang 3865df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3866df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38679566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38689566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3869df40acb1SHong Zhang } 38703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3871df40acb1SHong Zhang } 3872df40acb1SHong Zhang 3873ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3874d71ae5a4SJacob Faibussowitsch { 38756a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3876899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3877ccd8e176SBarry Smith const PetscInt *JJ; 3878eeb24464SBarry Smith PetscBool nooffprocentries; 38796a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3880ccd8e176SBarry Smith 3881ccd8e176SBarry Smith PetscFunctionBegin; 3882aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3883899cda47SBarry Smith 38849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3886d0f46423SBarry Smith m = B->rmap->n; 3887d0f46423SBarry Smith cstart = B->cmap->rstart; 3888d0f46423SBarry Smith cend = B->cmap->rend; 3889d0f46423SBarry Smith rstart = B->rmap->rstart; 3890899cda47SBarry Smith 38919566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3892ccd8e176SBarry Smith 389376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 38948f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3895ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 3896*8e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 389708401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 389808401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 389908401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3900ecc77c7aSBarry Smith } 390176bd3646SJed Brown } 3902ecc77c7aSBarry Smith 39038f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3904b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 3905*8e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3906ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3907ccd8e176SBarry Smith d = 0; 39080daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39090daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3910ccd8e176SBarry Smith } 3911ccd8e176SBarry Smith d_nnz[i] = d; 3912ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3913ccd8e176SBarry Smith } 39149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39159566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3916ccd8e176SBarry Smith 39178f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3918ccd8e176SBarry Smith ii = i + rstart; 3919*8e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3920ccd8e176SBarry Smith } 3921eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3922eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3925eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3926ccd8e176SBarry Smith 39276a3d2595SBarry Smith /* count number of entries below block diagonal */ 39286a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39296a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39306a3d2595SBarry Smith Aij->ld = ld; 39316a3d2595SBarry Smith for (i = 0; i < m; i++) { 39326a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39336a3d2595SBarry Smith j = 0; 3934ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39356a3d2595SBarry Smith ld[i] = j; 3936720a2405SPierre Jolivet if (J) J += nnz; 39376a3d2595SBarry Smith } 39386a3d2595SBarry Smith 39399566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3941ccd8e176SBarry Smith } 3942ccd8e176SBarry Smith 39431eea217eSSatish Balay /*@ 394411a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3945ccd8e176SBarry Smith (the default parallel PETSc format). 3946ccd8e176SBarry Smith 3947d083f849SBarry Smith Collective 3948ccd8e176SBarry Smith 3949ccd8e176SBarry Smith Input Parameters: 3950a1661176SMatthew Knepley + B - the matrix 3951ccd8e176SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 39520daa03b5SJed Brown . j - the column indices for each local row (starts with zero) 3953ccd8e176SBarry Smith - v - optional values in the matrix 3954ccd8e176SBarry Smith 3955ccd8e176SBarry Smith Level: developer 3956ccd8e176SBarry Smith 395712251496SSatish Balay Notes: 39582ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39592ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 396011a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 396112251496SSatish Balay 39622ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 396312251496SSatish Balay 396412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 396512251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3966c5e4d11fSDmitry Karpeev as shown 396712251496SSatish Balay 396827430b45SBarry Smith .vb 396927430b45SBarry Smith 1 0 0 397027430b45SBarry Smith 2 0 3 P0 397127430b45SBarry Smith ------- 397227430b45SBarry Smith 4 5 6 P1 397327430b45SBarry Smith 397427430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 397527430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 397627430b45SBarry Smith j = {0,0,2} [size = 3] 397727430b45SBarry Smith v = {1,2,3} [size = 3] 397827430b45SBarry Smith 397927430b45SBarry Smith Process1 [P1] rows_owned=[2] 398027430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 398127430b45SBarry Smith j = {0,1,2} [size = 3] 398227430b45SBarry Smith v = {4,5,6} [size = 3] 398327430b45SBarry Smith .ve 398412251496SSatish Balay 3985fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 3986db781477SPatrick Sanan `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()` 3987ccd8e176SBarry Smith @*/ 3988d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 3989d71ae5a4SJacob Faibussowitsch { 3990ccd8e176SBarry Smith PetscFunctionBegin; 3991cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 39923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3993ccd8e176SBarry Smith } 3994ccd8e176SBarry Smith 3995273d9f13SBarry Smith /*@C 399611a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 3997273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 3998273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 399920f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4000273d9f13SBarry Smith 4001d083f849SBarry Smith Collective 4002273d9f13SBarry Smith 4003273d9f13SBarry Smith Input Parameters: 40041c4f3114SJed Brown + B - the matrix 4005273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4006273d9f13SBarry Smith (same value is used for all local rows) 4007273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4008273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40092ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4010273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40113287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40123287b5eaSJed Brown the diagonal entry even if it is zero. 4013273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4014273d9f13SBarry Smith submatrix (same value is used for all local rows). 4015273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4016273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40172ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4018273d9f13SBarry Smith structure. The size of this array is equal to the number 4019273d9f13SBarry Smith of local rows, i.e 'm'. 4020273d9f13SBarry Smith 40212920cce0SJacob Faibussowitsch Example Usage: 402227430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 402327430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 402427430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 402527430b45SBarry Smith as follows 402627430b45SBarry Smith 402727430b45SBarry Smith .vb 402827430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 402927430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 403027430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 403127430b45SBarry Smith ------------------------------------- 403227430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 403327430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 403427430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 403527430b45SBarry Smith ------------------------------------- 403627430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 403727430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 403827430b45SBarry Smith .ve 403927430b45SBarry Smith 404027430b45SBarry Smith This can be represented as a collection of submatrices as 404127430b45SBarry Smith .vb 404227430b45SBarry Smith A B C 404327430b45SBarry Smith D E F 404427430b45SBarry Smith G H I 404527430b45SBarry Smith .ve 404627430b45SBarry Smith 404727430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 404827430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 404927430b45SBarry Smith 405027430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405127430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405227430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 405327430b45SBarry Smith 405427430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 405527430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 405627430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 405727430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 405827430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 405927430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 406027430b45SBarry Smith 406120f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 406220f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 406327430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 406420f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 406527430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 406620f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 406727430b45SBarry Smith .vb 406827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 406927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 407027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 407127430b45SBarry Smith .ve 407220f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 407327430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 407427430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 407527430b45SBarry Smith 34 values. 407627430b45SBarry Smith 407720f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 407827430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 407920f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 408027430b45SBarry Smith .vb 408127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 408227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 408327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 408427430b45SBarry Smith .ve 408527430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 408627430b45SBarry Smith hence pre-allocation is perfect. 408727430b45SBarry Smith 408827430b45SBarry Smith Level: intermediate 408927430b45SBarry Smith 409027430b45SBarry Smith Notes: 409149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 409249a6f317SBarry Smith 409327430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 40940598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4095651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4096273d9f13SBarry Smith 4097273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4098273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4099273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4100273d9f13SBarry Smith 4101273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4102a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4103a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4104a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4105a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4106a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4107a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4108a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4109a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4110273d9f13SBarry Smith 41112ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4112273d9f13SBarry Smith 411327430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4114aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 411527430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4116aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4117aa95bbe8SBarry Smith 41181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4119fe59aa6dSJacob Faibussowitsch `MatGetInfo()`, `PetscSplitOwnership()` 4120273d9f13SBarry Smith @*/ 4121d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4122d71ae5a4SJacob Faibussowitsch { 4123273d9f13SBarry Smith PetscFunctionBegin; 41246ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41256ba663aaSJed Brown PetscValidType(B, 1); 4126cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4128273d9f13SBarry Smith } 4129273d9f13SBarry Smith 413058d36128SBarry Smith /*@ 413111a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41328f8f2f0dSBarry Smith CSR format for the local rows. 41332fb0ec9aSBarry Smith 4134d083f849SBarry Smith Collective 41352fb0ec9aSBarry Smith 41362fb0ec9aSBarry Smith Input Parameters: 41372fb0ec9aSBarry Smith + comm - MPI communicator 413811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41392fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 414011a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 41412fb0ec9aSBarry Smith calculated if N is given) For square matrices n is almost always m. 414211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 414311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4144483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41452fb0ec9aSBarry Smith . j - column indices 4146f1f2ae84SBarry Smith - a - optional matrix values 41472fb0ec9aSBarry Smith 41482fb0ec9aSBarry Smith Output Parameter: 41492fb0ec9aSBarry Smith . mat - the matrix 415003bfb495SBarry Smith 41512fb0ec9aSBarry Smith Level: intermediate 41522fb0ec9aSBarry Smith 41532fb0ec9aSBarry Smith Notes: 41542ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 41552fb0ec9aSBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 41562ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41572fb0ec9aSBarry Smith 41582ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 415912251496SSatish Balay 416012251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 416112251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4162c5e4d11fSDmitry Karpeev as shown 416312251496SSatish Balay 41648f8f2f0dSBarry Smith Once you have created the matrix you can update it with new numerical values using MatUpdateMPIAIJWithArrays 41652ef1f0ffSBarry Smith .vb 41662ef1f0ffSBarry Smith 1 0 0 41672ef1f0ffSBarry Smith 2 0 3 P0 41682ef1f0ffSBarry Smith ------- 41692ef1f0ffSBarry Smith 4 5 6 P1 41708f8f2f0dSBarry Smith 41712ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41722ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41732ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41742ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41752fb0ec9aSBarry Smith 41762ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41772ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41782ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41792ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 41802ef1f0ffSBarry Smith .ve 41812ef1f0ffSBarry Smith 41821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4183db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()` 41842fb0ec9aSBarry Smith @*/ 4185d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4186d71ae5a4SJacob Faibussowitsch { 41872fb0ec9aSBarry Smith PetscFunctionBegin; 418808401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 418908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 41909566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 41919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 41929566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 41939566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 41949566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 41953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41962fb0ec9aSBarry Smith } 41972fb0ec9aSBarry Smith 41988f8f2f0dSBarry Smith /*@ 419911a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42002ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42012ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42026a3d2595SBarry Smith 42036a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42048f8f2f0dSBarry Smith 42058f8f2f0dSBarry Smith Collective 42068f8f2f0dSBarry Smith 42078f8f2f0dSBarry Smith Input Parameters: 42088f8f2f0dSBarry Smith + mat - the matrix 420911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42108f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 421111a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42128f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 421311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 421411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42158f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42168f8f2f0dSBarry Smith . J - column indices 42178f8f2f0dSBarry Smith - v - matrix values 42188f8f2f0dSBarry Smith 42192ef1f0ffSBarry Smith Level: deprecated 42208f8f2f0dSBarry Smith 42211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 422242747ad1SJacob Faibussowitsch `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()` 42238f8f2f0dSBarry Smith @*/ 4224d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4225d71ae5a4SJacob Faibussowitsch { 42266a3d2595SBarry Smith PetscInt nnz, i; 42278f8f2f0dSBarry Smith PetscBool nooffprocentries; 42288f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4229fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4230fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42318f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42326a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42336a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42348f8f2f0dSBarry Smith 42358f8f2f0dSBarry Smith PetscFunctionBegin; 4236aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 423708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 423808401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 423908401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42408f8f2f0dSBarry Smith 42419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42438f8f2f0dSBarry Smith 42448f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42458f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42468f8f2f0dSBarry Smith Iii = Ii[i]; 42478f8f2f0dSBarry Smith ldi = ld[i]; 42488f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42509566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42519566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42528f8f2f0dSBarry Smith ad += md; 42538f8f2f0dSBarry Smith ao += nnz - md; 42548f8f2f0dSBarry Smith } 42558f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42568f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42599566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42609566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42619566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42648f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42668f8f2f0dSBarry Smith } 42678f8f2f0dSBarry Smith 42686a3d2595SBarry Smith /*@ 426911a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42706a3d2595SBarry Smith 42716a3d2595SBarry Smith Collective 42726a3d2595SBarry Smith 42736a3d2595SBarry Smith Input Parameters: 42746a3d2595SBarry Smith + mat - the matrix 42756a3d2595SBarry Smith - v - matrix values, stored by row 42766a3d2595SBarry Smith 42776a3d2595SBarry Smith Level: intermediate 42786a3d2595SBarry Smith 427911a5261eSBarry Smith Note: 42806a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 42816a3d2595SBarry Smith 42821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4283fe59aa6dSJacob Faibussowitsch `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()` 42846a3d2595SBarry Smith @*/ 4285d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4286d71ae5a4SJacob Faibussowitsch { 42876a3d2595SBarry Smith PetscInt nnz, i, m; 42886a3d2595SBarry Smith PetscBool nooffprocentries; 42896a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 42906a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 42916a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 42926a3d2595SBarry Smith PetscScalar *ad, *ao; 42936a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 42946a3d2595SBarry Smith PetscInt ldi, Iii, md; 42956a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42966a3d2595SBarry Smith 42976a3d2595SBarry Smith PetscFunctionBegin; 42986a3d2595SBarry Smith m = mat->rmap->n; 42996a3d2595SBarry Smith 43006a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43016a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43026a3d2595SBarry Smith Iii = 0; 43036a3d2595SBarry Smith for (i = 0; i < m; i++) { 43046a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43056a3d2595SBarry Smith ldi = ld[i]; 43066a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43076a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43086a3d2595SBarry Smith ad += md; 4309810441c8SPierre Jolivet if (ao) { 4310810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4311810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43126a3d2595SBarry Smith ao += nnz - md; 4313810441c8SPierre Jolivet } 43146a3d2595SBarry Smith Iii += nnz; 43156a3d2595SBarry Smith } 43166a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43176a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43186a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43196a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43206a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43216a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43226a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43236a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43246a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43256a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43276a3d2595SBarry Smith } 43286a3d2595SBarry Smith 4329273d9f13SBarry Smith /*@C 433011a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4331273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4332273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43332ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4334273d9f13SBarry Smith 4335d083f849SBarry Smith Collective 4336273d9f13SBarry Smith 4337273d9f13SBarry Smith Input Parameters: 4338273d9f13SBarry Smith + comm - MPI communicator 433911a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4340273d9f13SBarry Smith This value should be the same as the local size used in creating the 4341273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4342273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 434345f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4344273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 434511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 434611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4347273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4348273d9f13SBarry Smith (same value is used for all local rows) 4349273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4350273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43512ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4352273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4353273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4354273d9f13SBarry Smith submatrix (same value is used for all local rows). 4355273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4356273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43572ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4358273d9f13SBarry Smith structure. The size of this array is equal to the number 4359273d9f13SBarry Smith of local rows, i.e 'm'. 4360273d9f13SBarry Smith 4361273d9f13SBarry Smith Output Parameter: 4362273d9f13SBarry Smith . A - the matrix 4363273d9f13SBarry Smith 436427430b45SBarry Smith Options Database Keys: 436527430b45SBarry Smith + -mat_no_inode - Do not use inodes 436627430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 436727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 436827430b45SBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix. 436927430b45SBarry Smith Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 437027430b45SBarry Smith 43712ef1f0ffSBarry Smith Level: intermediate 43722ef1f0ffSBarry Smith 437327430b45SBarry Smith Notes: 437477433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4375f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 437611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4377175b88e8SBarry Smith 437849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 437949a6f317SBarry Smith 43802ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 43812ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4382273d9f13SBarry Smith storage requirements for this matrix. 4383273d9f13SBarry Smith 438411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4385273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4386273d9f13SBarry Smith that argument. 4387273d9f13SBarry Smith 4388273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4389273d9f13SBarry Smith (possibly both). 4390273d9f13SBarry Smith 439133a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 439233a7c187SSatish Balay first m0 rows belong to process 0, the next m1 rows belong to 439333a7c187SSatish Balay process 1, the next m2 rows belong to process 2 etc.. where 439433a7c187SSatish Balay m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 439533a7c187SSatish Balay values corresponding to [m x N] submatrix. 4396273d9f13SBarry Smith 439733a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 439833a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4399df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 440033a7c187SSatish Balay 440133a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 440233a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 440333a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 440433a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 440533a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 440633a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 440733a7c187SSatish Balay illustrates this concept. 440833a7c187SSatish Balay 440933a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 441033a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 441133a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 441233a7c187SSatish Balay local matrix (a rectangular submatrix). 4413273d9f13SBarry Smith 44142ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4415273d9f13SBarry Smith 441697d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44172ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4418da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4419da57b5cdSKarl Rupp .vb 44202ef1f0ffSBarry Smith MatCreate(..., &A); 44212ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44222ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44232ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4424da57b5cdSKarl Rupp .ve 442597d05335SKris Buschelman 4426273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4427273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4428273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4429273d9f13SBarry Smith 44302920cce0SJacob Faibussowitsch Example Usage: 4431273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4432273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4433273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4434efc377ccSKarl Rupp as follows 4435273d9f13SBarry Smith 4436273d9f13SBarry Smith .vb 4437273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4438273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4439273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4440273d9f13SBarry Smith ------------------------------------- 4441273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4442273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4443273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4444273d9f13SBarry Smith ------------------------------------- 4445273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4446273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4447273d9f13SBarry Smith .ve 4448273d9f13SBarry Smith 4449da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4450273d9f13SBarry Smith 4451273d9f13SBarry Smith .vb 4452273d9f13SBarry Smith A B C 4453273d9f13SBarry Smith D E F 4454273d9f13SBarry Smith G H I 4455273d9f13SBarry Smith .ve 4456273d9f13SBarry Smith 4457273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4458273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4459273d9f13SBarry Smith 4460273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4461273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4462273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4463273d9f13SBarry Smith 4464273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4465273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4466273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4467273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 446827430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4469273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4470273d9f13SBarry Smith 44712ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 44722ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4473273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 44742ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4475273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 44762ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4477273d9f13SBarry Smith .vb 447827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 447927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 448027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4481273d9f13SBarry Smith .ve 44822ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4483273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4484273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4485273d9f13SBarry Smith 34 values. 4486273d9f13SBarry Smith 44872ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4488a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4489da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4490273d9f13SBarry Smith .vb 449127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 449227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 449327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4494273d9f13SBarry Smith .ve 4495273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4496273d9f13SBarry Smith hence pre-allocation is perfect. 4497273d9f13SBarry Smith 44981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4499db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()` 4500273d9f13SBarry Smith @*/ 4501d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4502d71ae5a4SJacob Faibussowitsch { 4503b1d57f15SBarry Smith PetscMPIInt size; 4504273d9f13SBarry Smith 4505273d9f13SBarry Smith PetscFunctionBegin; 45069566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4509273d9f13SBarry Smith if (size > 1) { 45109566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45119566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4512273d9f13SBarry Smith } else { 45139566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4515273d9f13SBarry Smith } 45163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4517273d9f13SBarry Smith } 4518195d93cdSBarry Smith 45190b98dbb4SBarry Smith /*MC 45200b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45210b98dbb4SBarry Smith 45220b98dbb4SBarry Smith Synopsis: 45230b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45240b98dbb4SBarry Smith 45250b98dbb4SBarry Smith Not Collective 45260b98dbb4SBarry Smith 45270b98dbb4SBarry Smith Input Parameter: 45280b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45290b98dbb4SBarry Smith 45300b98dbb4SBarry Smith Output Parameters: 45310b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45324cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45332ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45340b98dbb4SBarry Smith - ierr - error code 45350b98dbb4SBarry Smith 45360b98dbb4SBarry Smith Level: advanced 45370b98dbb4SBarry Smith 45380b98dbb4SBarry Smith Note: 45390b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45400b98dbb4SBarry Smith 45411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45420b98dbb4SBarry Smith M*/ 45430b98dbb4SBarry Smith 45440b98dbb4SBarry Smith /*MC 45450b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45460b98dbb4SBarry Smith 45470b98dbb4SBarry Smith Synopsis: 45480b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45490b98dbb4SBarry Smith 45500b98dbb4SBarry Smith Not Collective 45510b98dbb4SBarry Smith 45520b98dbb4SBarry Smith Input Parameters: 45530b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45540b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45554cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45562ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45570b98dbb4SBarry Smith - ierr - error code 45580b98dbb4SBarry Smith 45590b98dbb4SBarry Smith Level: advanced 45600b98dbb4SBarry Smith 45611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45620b98dbb4SBarry Smith M*/ 45630b98dbb4SBarry Smith 4564127ca0efSMatthew Knepley /*@C 45650ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4566127ca0efSMatthew Knepley 45672ef1f0ffSBarry Smith Not Collective 4568127ca0efSMatthew Knepley 4569127ca0efSMatthew Knepley Input Parameter: 457011a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4571127ca0efSMatthew Knepley 4572127ca0efSMatthew Knepley Output Parameters: 457311a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 457411a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45752ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4576127ca0efSMatthew Knepley 45770ab4885dSBarry Smith Level: intermediate 45780ab4885dSBarry Smith 457911a5261eSBarry Smith Note: 45802ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45812ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45822ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4583127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4584127ca0efSMatthew Knepley 4585fe59aa6dSJacob Faibussowitsch Fortran Notes: 45860ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4587127ca0efSMatthew Knepley 4588fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4589127ca0efSMatthew Knepley @*/ 4590d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4591d71ae5a4SJacob Faibussowitsch { 4592195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 459304cf37c7SBarry Smith PetscBool flg; 4594b1d57f15SBarry Smith 4595195d93cdSBarry Smith PetscFunctionBegin; 45969566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 459728b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 459821e72a00SBarry Smith if (Ad) *Ad = a->A; 459921e72a00SBarry Smith if (Ao) *Ao = a->B; 460021e72a00SBarry Smith if (colmap) *colmap = a->garray; 46013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4602195d93cdSBarry Smith } 4603a2243be0SBarry Smith 4604d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4605d71ae5a4SJacob Faibussowitsch { 4606110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46079b8102ccSHong Zhang PetscInt *indx; 4608110bb6e1SHong Zhang PetscScalar *values; 4609421ddf4dSJunchao Zhang MatType rootType; 46109b8102ccSHong Zhang 46119b8102ccSHong Zhang PetscFunctionBegin; 46129566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4613110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4614110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4615110bb6e1SHong Zhang 461648a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4617a22543b6SHong Zhang /* Check sum(n) = N */ 46181c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 461908401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4620a22543b6SHong Zhang 46219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46229b8102ccSHong Zhang rstart -= m; 46239b8102ccSHong Zhang 4624d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46259b8102ccSHong Zhang for (i = 0; i < m; i++) { 46269566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46279566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46289566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46299b8102ccSHong Zhang } 46309b8102ccSHong Zhang 46319566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46339566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46349566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46359566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46369566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4639d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46409566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46419b8102ccSHong Zhang } 46429b8102ccSHong Zhang 4643110bb6e1SHong Zhang /* numeric phase */ 46449566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46459b8102ccSHong Zhang for (i = 0; i < m; i++) { 46469566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46479b8102ccSHong Zhang Ii = i + rstart; 46489566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46499566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46509b8102ccSHong Zhang } 46519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4654c5d6d63eSBarry Smith } 4655c5d6d63eSBarry Smith 4656d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4657d71ae5a4SJacob Faibussowitsch { 46586718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 465951a7d1a8SHong Zhang 466051a7d1a8SHong Zhang PetscFunctionBegin; 46613ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46629566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46639566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46649566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46659566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46669566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46679566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46689566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46699566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46709566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46719566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46729566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46739566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46749566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46759566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 467751a7d1a8SHong Zhang } 467851a7d1a8SHong Zhang 4679c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4680c6db04a5SJed Brown #include <petscbt.h> 46814ebed01fSBarry Smith 4682d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4683d71ae5a4SJacob Faibussowitsch { 4684ce94432eSBarry Smith MPI_Comm comm; 468555d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4686b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4687a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4688b1d57f15SBarry Smith PetscInt proc, m; 4689b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4690b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4691b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 469255d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 469355d1abb9SHong Zhang MPI_Status *status; 4694fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4695dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 469655d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4697776b82aeSLisandro Dalcin PetscContainer container; 469855d1abb9SHong Zhang 469955d1abb9SHong Zhang PetscFunctionBegin; 47009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47019566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47023c2c1871SHong Zhang 47039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 470555d1abb9SHong Zhang 47069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 470728b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47089566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4710fff043a9SJunchao Zhang aa = a_a; 4711bf0cc555SLisandro Dalcin 471255d1abb9SHong Zhang bi = merge->bi; 471355d1abb9SHong Zhang bj = merge->bj; 471455d1abb9SHong Zhang buf_ri = merge->buf_ri; 471555d1abb9SHong Zhang buf_rj = merge->buf_rj; 471655d1abb9SHong Zhang 47179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47187a2fc3feSBarry Smith owners = merge->rowmap->range; 471955d1abb9SHong Zhang len_s = merge->len_s; 472055d1abb9SHong Zhang 472155d1abb9SHong Zhang /* send and recv matrix values */ 47229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47239566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 472455d1abb9SHong Zhang 47259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 472655d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 472755d1abb9SHong Zhang if (!len_s[proc]) continue; 472855d1abb9SHong Zhang i = owners[proc]; 47299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 473055d1abb9SHong Zhang k++; 473155d1abb9SHong Zhang } 473255d1abb9SHong Zhang 47339566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47349566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47359566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 473655d1abb9SHong Zhang 47379566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47389566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 473955d1abb9SHong Zhang 474055d1abb9SHong Zhang /* insert mat values of mpimat */ 47419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47429566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 474355d1abb9SHong Zhang 474455d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 474555d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 474655d1abb9SHong Zhang nrows = *(buf_ri_k[k]); 474755d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4748a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 474955d1abb9SHong Zhang } 475055d1abb9SHong Zhang 475155d1abb9SHong Zhang /* set values of ba */ 47527a2fc3feSBarry Smith m = merge->rowmap->n; 475355d1abb9SHong Zhang for (i = 0; i < m; i++) { 475455d1abb9SHong Zhang arow = owners[rank] + i; 475555d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 475655d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47579566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 475855d1abb9SHong Zhang 475955d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 476055d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 476155d1abb9SHong Zhang aj = a->j + ai[arow]; 4762fff043a9SJunchao Zhang aa = a_a + ai[arow]; 476355d1abb9SHong Zhang nextaj = 0; 476455d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 476555d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 476655d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 476755d1abb9SHong Zhang } 476855d1abb9SHong Zhang } 476955d1abb9SHong Zhang 477055d1abb9SHong Zhang /* add received vals into ba */ 477155d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 477255d1abb9SHong Zhang /* i-th row */ 477355d1abb9SHong Zhang if (i == *nextrow[k]) { 477455d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 477555d1abb9SHong Zhang aj = buf_rj[k] + *(nextai[k]); 477655d1abb9SHong Zhang aa = abuf_r[k] + *(nextai[k]); 477755d1abb9SHong Zhang nextaj = 0; 477855d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 477955d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 478055d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 478155d1abb9SHong Zhang } 478255d1abb9SHong Zhang } 47839371c9d4SSatish Balay nextrow[k]++; 47849371c9d4SSatish Balay nextai[k]++; 478555d1abb9SHong Zhang } 478655d1abb9SHong Zhang } 47879566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 478855d1abb9SHong Zhang } 47899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 479255d1abb9SHong Zhang 47939566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47949566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47959566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47969566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47979566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 479955d1abb9SHong Zhang } 480038f152feSBarry Smith 4801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4802d71ae5a4SJacob Faibussowitsch { 480355a3bba9SHong Zhang Mat B_mpi; 4804c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4805b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4806b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4807d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4808a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4809c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4810b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 481155d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 481258cb9c82SHong Zhang MPI_Status *status; 48130298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4814be0fcf8dSHong Zhang PetscBT lnkbt; 481551a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4816776b82aeSLisandro Dalcin PetscContainer container; 481702c68681SHong Zhang 4818e5f2cdd8SHong Zhang PetscFunctionBegin; 48199566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48203c2c1871SHong Zhang 482138f152feSBarry Smith /* make sure it is a PETSc comm */ 48229566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 482555d1abb9SHong Zhang 48269566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4828e5f2cdd8SHong Zhang 48296abd8857SHong Zhang /* determine row ownership */ 48309566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 483755d1abb9SHong Zhang 48387a2fc3feSBarry Smith m = merge->rowmap->n; 48397a2fc3feSBarry Smith owners = merge->rowmap->range; 48406abd8857SHong Zhang 48416abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48423e06a4e6SHong Zhang len_s = merge->len_s; 484351a7d1a8SHong Zhang 48442257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4845c2234fe3SHong Zhang merge->nsend = 0; 4846409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48472257cef7SHong Zhang len_si[proc] = 0; 48483e06a4e6SHong Zhang if (proc == rank) { 48496abd8857SHong Zhang len_s[proc] = 0; 48503e06a4e6SHong Zhang } else { 485102c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48523e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48533e06a4e6SHong Zhang } 48543e06a4e6SHong Zhang if (len_s[proc]) { 4855c2234fe3SHong Zhang merge->nsend++; 48562257cef7SHong Zhang nrows = 0; 48572257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48582257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48592257cef7SHong Zhang } 48602257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48612257cef7SHong Zhang len += len_si[proc]; 4862409913e3SHong Zhang } 486358cb9c82SHong Zhang } 4864409913e3SHong Zhang 48652257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48669566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48679566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4868671beff6SHong Zhang 48693e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48709566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48719566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 487202c68681SHong Zhang 48733e06a4e6SHong Zhang /* post the Isend of j-structure */ 48749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48753e06a4e6SHong Zhang 48762257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4877409913e3SHong Zhang if (!len_s[proc]) continue; 487802c68681SHong Zhang i = owners[proc]; 48799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 488051a7d1a8SHong Zhang k++; 488151a7d1a8SHong Zhang } 488251a7d1a8SHong Zhang 48833e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48849566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48859566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 488602c68681SHong Zhang 488702c68681SHong Zhang /* send and recv i-structure */ 48889566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48899566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 489002c68681SHong Zhang 48919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48923e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48932257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 489402c68681SHong Zhang if (!len_s[proc]) continue; 48953e06a4e6SHong Zhang /* form outgoing message for i-structure: 48963e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48973e06a4e6SHong Zhang [1:nrows]: row index (global) 48983e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48993e06a4e6SHong Zhang */ 49002257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49013e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49023e06a4e6SHong Zhang buf_si[0] = nrows; 49033e06a4e6SHong Zhang buf_si_i[0] = 0; 49043e06a4e6SHong Zhang nrows = 0; 49053e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49063e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49073e06a4e6SHong Zhang if (anzi) { 49083e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49093e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49103e06a4e6SHong Zhang nrows++; 49113e06a4e6SHong Zhang } 49123e06a4e6SHong Zhang } 49139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 491402c68681SHong Zhang k++; 49152257cef7SHong Zhang buf_si += len_si[proc]; 491602c68681SHong Zhang } 49172257cef7SHong Zhang 49189566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49199566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 492002c68681SHong Zhang 49219566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 492248a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49233e06a4e6SHong Zhang 49249566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49259566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49269566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49279566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49289566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49299566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49309566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 493158cb9c82SHong Zhang 4932bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 493358cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 493558cb9c82SHong Zhang bi[0] = 0; 493658cb9c82SHong Zhang 4937be0fcf8dSHong Zhang /* create and initialize a linked list */ 4938be0fcf8dSHong Zhang nlnk = N + 1; 49399566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 494058cb9c82SHong Zhang 4941bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4942bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49439566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49442205254eSKarl Rupp 494558cb9c82SHong Zhang current_space = free_space; 494658cb9c82SHong Zhang 4947bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49489566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49491d79065fSBarry Smith 49503e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49512257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49523e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49533e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4954a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49553e06a4e6SHong Zhang } 49562257cef7SHong Zhang 4957d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4958bcc1bcd5SHong Zhang len = 0; 495958cb9c82SHong Zhang for (i = 0; i < m; i++) { 496058cb9c82SHong Zhang bnzi = 0; 496158cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 496258cb9c82SHong Zhang arow = owners[rank] + i; 496358cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 496458cb9c82SHong Zhang aj = a->j + ai[arow]; 49659566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 496658cb9c82SHong Zhang bnzi += nlnk; 496758cb9c82SHong Zhang /* add received col data into lnk */ 496851a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 496955d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49703e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49713e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49729566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49733e06a4e6SHong Zhang bnzi += nlnk; 49749371c9d4SSatish Balay nextrow[k]++; 49759371c9d4SSatish Balay nextai[k]++; 49763e06a4e6SHong Zhang } 497758cb9c82SHong Zhang } 4978bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 497958cb9c82SHong Zhang 498058cb9c82SHong Zhang /* if free space is not available, make more free space */ 498148a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 498258cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49839566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49849566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4985bcc1bcd5SHong Zhang 498658cb9c82SHong Zhang current_space->array += bnzi; 498758cb9c82SHong Zhang current_space->local_used += bnzi; 498858cb9c82SHong Zhang current_space->local_remaining -= bnzi; 498958cb9c82SHong Zhang 499058cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 499158cb9c82SHong Zhang } 4992bcc1bcd5SHong Zhang 49939566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4994bcc1bcd5SHong Zhang 49959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 49969566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49979566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4998409913e3SHong Zhang 4999bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50009566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50019566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 500254b84b50SHong Zhang if (n == PETSC_DECIDE) { 50039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 500454b84b50SHong Zhang } else { 50059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 500654b84b50SHong Zhang } 50079566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50089566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5010d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50119566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 501258cb9c82SHong Zhang 501390431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50146abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5015affca5deSHong Zhang merge->bi = bi; 5016affca5deSHong Zhang merge->bj = bj; 501702c68681SHong Zhang merge->buf_ri = buf_ri; 501802c68681SHong Zhang merge->buf_rj = buf_rj; 50190298fd71SBarry Smith merge->coi = NULL; 50200298fd71SBarry Smith merge->coj = NULL; 50210298fd71SBarry Smith merge->owners_co = NULL; 5022affca5deSHong Zhang 50239566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5024bf0cc555SLisandro Dalcin 5025affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50269566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50279566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50289566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50299566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50309566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5031affca5deSHong Zhang *mpimat = B_mpi; 503238f152feSBarry Smith 50339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5035e5f2cdd8SHong Zhang } 503625616d81SHong Zhang 5037d4036a1aSHong Zhang /*@C 503811a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5039d4036a1aSHong Zhang matrices from each processor 5040d4036a1aSHong Zhang 5041d083f849SBarry Smith Collective 5042d4036a1aSHong Zhang 5043d4036a1aSHong Zhang Input Parameters: 5044d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5045d4036a1aSHong Zhang . seqmat - the input sequential matrices 504611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 504711a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 504811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5049d4036a1aSHong Zhang 5050d4036a1aSHong Zhang Output Parameter: 5051d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5052d4036a1aSHong Zhang 5053d4036a1aSHong Zhang Level: advanced 5054d4036a1aSHong Zhang 505511a5261eSBarry Smith Note: 5056d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5057d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 505811a5261eSBarry Smith destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat. 50592ef1f0ffSBarry Smith 50601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5061d4036a1aSHong Zhang @*/ 5062d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5063d71ae5a4SJacob Faibussowitsch { 50647e63b356SHong Zhang PetscMPIInt size; 506555d1abb9SHong Zhang 506655d1abb9SHong Zhang PetscFunctionBegin; 50679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50687e63b356SHong Zhang if (size == 1) { 50699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50707e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50719566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50727e63b356SHong Zhang } else { 50739566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50747e63b356SHong Zhang } 50759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50777e63b356SHong Zhang } 50789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 507948a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50809566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 508355d1abb9SHong Zhang } 50844ebed01fSBarry Smith 5085bc08b0f1SBarry Smith /*@ 50862920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50878a9c020eSBarry Smith 50888a9c020eSBarry Smith Not Collective 50898a9c020eSBarry Smith 50902fe279fdSBarry Smith Input Parameter: 509120f4b53cSBarry Smith . A - the matrix 50928a9c020eSBarry Smith 50938a9c020eSBarry Smith Output Parameter: 50948a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50958a9c020eSBarry Smith 50968a9c020eSBarry Smith Level: developer 50978a9c020eSBarry Smith 50988a9c020eSBarry Smith Notes: 50992920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51002920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51012920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51022920cce0SJacob Faibussowitsch 510311a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51048a9c020eSBarry Smith 51052920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51062920cce0SJacob Faibussowitsch 510711a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51088a9c020eSBarry Smith 51091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51108a9c020eSBarry Smith @*/ 5111d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5112d71ae5a4SJacob Faibussowitsch { 51138a9c020eSBarry Smith PetscBool mpi; 51148a9c020eSBarry Smith 51158a9c020eSBarry Smith PetscFunctionBegin; 51168a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51178a9c020eSBarry Smith if (mpi) { 51188a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51198a9c020eSBarry Smith } else { 51208a9c020eSBarry Smith *A_loc = A; 51218a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51228a9c020eSBarry Smith } 51233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51248a9c020eSBarry Smith } 51258a9c020eSBarry Smith 51268a9c020eSBarry Smith /*@ 51272920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 512825616d81SHong Zhang 512932fba14fSHong Zhang Not Collective 513025616d81SHong Zhang 513125616d81SHong Zhang Input Parameters: 513225616d81SHong Zhang + A - the matrix 513311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 513425616d81SHong Zhang 513525616d81SHong Zhang Output Parameter: 513625616d81SHong Zhang . A_loc - the local sequential matrix generated 513725616d81SHong Zhang 513825616d81SHong Zhang Level: developer 513925616d81SHong Zhang 514077c65a98SStefano Zampini Notes: 51412920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51422920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51432920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51442920cce0SJacob Faibussowitsch 514511a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51468a9c020eSBarry Smith 51472920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51482920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51492920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51502920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 515177c65a98SStefano Zampini 51521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 515325616d81SHong Zhang @*/ 5154d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5155d71ae5a4SJacob Faibussowitsch { 515601b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5157b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5158b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5159ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5160ce496241SStefano Zampini PetscScalar *ca, *cam; 516177c65a98SStefano Zampini PetscMPIInt size; 5162d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51635a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51648661ff28SBarry Smith PetscBool match; 516525616d81SHong Zhang 516625616d81SHong Zhang PetscFunctionBegin; 51679566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 516828b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 517077c65a98SStefano Zampini if (size == 1) { 517177c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 517377c65a98SStefano Zampini *A_loc = mpimat->A; 517477c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51759566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 517677c65a98SStefano Zampini } 51773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 517877c65a98SStefano Zampini } 517970a9ba44SHong Zhang 51809566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5181b78526a6SJose E. Roman a = (Mat_SeqAIJ *)(mpimat->A)->data; 5182b78526a6SJose E. Roman b = (Mat_SeqAIJ *)(mpimat->B)->data; 51839371c9d4SSatish Balay ai = a->i; 51849371c9d4SSatish Balay aj = a->j; 51859371c9d4SSatish Balay bi = b->i; 51869371c9d4SSatish Balay bj = b->j; 51879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5189ce496241SStefano Zampini aa = aav; 5190ce496241SStefano Zampini ba = bav; 519101b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5193dea91ad1SHong Zhang ci[0] = 0; 5194ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5197dea91ad1SHong Zhang k = 0; 519801b7ae99SHong Zhang for (i = 0; i < am; i++) { 51995a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52005a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 520101b7ae99SHong Zhang /* off-diagonal portion of A */ 52025a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52035a7d977cSHong Zhang col = cmap[*bj]; 52045a7d977cSHong Zhang if (col >= cstart) break; 52059371c9d4SSatish Balay cj[k] = col; 52069371c9d4SSatish Balay bj++; 52075a7d977cSHong Zhang ca[k++] = *ba++; 52085a7d977cSHong Zhang } 52095a7d977cSHong Zhang /* diagonal portion of A */ 52105a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52115a7d977cSHong Zhang cj[k] = cstart + *aj++; 52125a7d977cSHong Zhang ca[k++] = *aa++; 52135a7d977cSHong Zhang } 52145a7d977cSHong Zhang /* off-diagonal portion of A */ 52155a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52165a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52175a7d977cSHong Zhang ca[k++] = *ba++; 52185a7d977cSHong Zhang } 521925616d81SHong Zhang } 5220dea91ad1SHong Zhang /* put together the new matrix */ 52219566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5222dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5223dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5224dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5225e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5226e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5227dea91ad1SHong Zhang mat->nonew = 0; 52285a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52295a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5230fff043a9SJunchao Zhang ci = mat->i; 5231fff043a9SJunchao Zhang cj = mat->j; 52329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52335a7d977cSHong Zhang for (i = 0; i < am; i++) { 52345a7d977cSHong Zhang /* off-diagonal portion of A */ 52355a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52365a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52375a7d977cSHong Zhang col = cmap[*bj]; 52385a7d977cSHong Zhang if (col >= cstart) break; 52399371c9d4SSatish Balay *cam++ = *ba++; 52409371c9d4SSatish Balay bj++; 52415a7d977cSHong Zhang } 52425a7d977cSHong Zhang /* diagonal portion of A */ 5243ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5244a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52455a7d977cSHong Zhang /* off-diagonal portion of A */ 5246f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52479371c9d4SSatish Balay *cam++ = *ba++; 52489371c9d4SSatish Balay bj++; 5249f33d1a9aSHong Zhang } 52505a7d977cSHong Zhang } 52519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 525298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 525725616d81SHong Zhang } 525825616d81SHong Zhang 5259ed502f03SStefano Zampini /*@ 526011a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52614cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5262ed502f03SStefano Zampini 5263ed502f03SStefano Zampini Not Collective 5264ed502f03SStefano Zampini 5265ed502f03SStefano Zampini Input Parameters: 5266ed502f03SStefano Zampini + A - the matrix 526711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5268ed502f03SStefano Zampini 5269d8d19677SJose E. Roman Output Parameters: 52702ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5271ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5272ed502f03SStefano Zampini 5273ed502f03SStefano Zampini Level: developer 5274ed502f03SStefano Zampini 527511a5261eSBarry Smith Note: 52762ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52774cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5278ed502f03SStefano Zampini 52791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5280ed502f03SStefano Zampini @*/ 5281d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5282d71ae5a4SJacob Faibussowitsch { 5283ed502f03SStefano Zampini Mat Ao, Ad; 5284ed502f03SStefano Zampini const PetscInt *cmap; 5285ed502f03SStefano Zampini PetscMPIInt size; 5286ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5287ed502f03SStefano Zampini 5288ed502f03SStefano Zampini PetscFunctionBegin; 52899566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5291ed502f03SStefano Zampini if (size == 1) { 5292ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5294ed502f03SStefano Zampini *A_loc = Ad; 5295ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52969566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5297ed502f03SStefano Zampini } 52989566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5300ed502f03SStefano Zampini } 53019566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5303ed502f03SStefano Zampini if (f) { 53049566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5305ed502f03SStefano Zampini } else { 5306ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5307ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5308ed502f03SStefano Zampini Mat_SeqAIJ *c; 5309ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5310ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5311ed502f03SStefano Zampini PetscInt *ci, *cj; 5312ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5313ed502f03SStefano Zampini PetscScalar *ca; 5314ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5315ed502f03SStefano Zampini 53169566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53179566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5320ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5321ed502f03SStefano Zampini PetscInt k; 53229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5325ed502f03SStefano Zampini ci[0] = 0; 5326ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5327ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5328ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5329ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5330ed502f03SStefano Zampini /* diagonal portion of A */ 5331ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5332ed502f03SStefano Zampini cj[k] = *aj++; 5333ed502f03SStefano Zampini ca[k] = *aa++; 5334ed502f03SStefano Zampini } 5335ed502f03SStefano Zampini /* off-diagonal portion of A */ 5336ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5337ed502f03SStefano Zampini cj[k] = dn + *bj++; 5338ed502f03SStefano Zampini ca[k] = *ba++; 5339ed502f03SStefano Zampini } 5340ed502f03SStefano Zampini } 5341ed502f03SStefano Zampini /* put together the new matrix */ 53429566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5343ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5344ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5345ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5346ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5347ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5348ed502f03SStefano Zampini c->nonew = 0; 53499566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5350ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5352ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5353ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5354ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5355ed502f03SStefano Zampini /* diagonal portion of A */ 5356ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5357ed502f03SStefano Zampini /* off-diagonal portion of A */ 5358ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5359ed502f03SStefano Zampini } 53609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 536198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5364ed502f03SStefano Zampini if (glob) { 5365ed502f03SStefano Zampini PetscInt cst, *gidx; 5366ed502f03SStefano Zampini 53679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5369ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5370ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5372ed502f03SStefano Zampini } 5373ed502f03SStefano Zampini } 53749566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5376ed502f03SStefano Zampini } 5377ed502f03SStefano Zampini 537832fba14fSHong Zhang /*@C 537911a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 538032fba14fSHong Zhang 538132fba14fSHong Zhang Not Collective 538232fba14fSHong Zhang 538332fba14fSHong Zhang Input Parameters: 538432fba14fSHong Zhang + A - the matrix 538511a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 538620f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 538720f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 538832fba14fSHong Zhang 538932fba14fSHong Zhang Output Parameter: 539032fba14fSHong Zhang . A_loc - the local sequential matrix generated 539132fba14fSHong Zhang 539232fba14fSHong Zhang Level: developer 539332fba14fSHong Zhang 53941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 539532fba14fSHong Zhang @*/ 5396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5397d71ae5a4SJacob Faibussowitsch { 539832fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 539932fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 540032fba14fSHong Zhang IS isrowa, iscola; 540132fba14fSHong Zhang Mat *aloc; 54024a2b5492SBarry Smith PetscBool match; 540332fba14fSHong Zhang 540432fba14fSHong Zhang PetscFunctionBegin; 54059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 540628b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 540832fba14fSHong Zhang if (!row) { 54099371c9d4SSatish Balay start = A->rmap->rstart; 54109371c9d4SSatish Balay end = A->rmap->rend; 54119566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 541232fba14fSHong Zhang } else { 541332fba14fSHong Zhang isrowa = *row; 541432fba14fSHong Zhang } 541532fba14fSHong Zhang if (!col) { 5416d0f46423SBarry Smith start = A->cmap->rstart; 541732fba14fSHong Zhang cmap = a->garray; 5418d0f46423SBarry Smith nzA = a->A->cmap->n; 5419d0f46423SBarry Smith nzB = a->B->cmap->n; 54209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 542132fba14fSHong Zhang ncols = 0; 542232fba14fSHong Zhang for (i = 0; i < nzB; i++) { 542332fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 542432fba14fSHong Zhang else break; 542532fba14fSHong Zhang } 542632fba14fSHong Zhang imark = i; 542732fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 542832fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 543032fba14fSHong Zhang } else { 543132fba14fSHong Zhang iscola = *col; 543232fba14fSHong Zhang } 543332fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 543532fba14fSHong Zhang aloc[0] = *A_loc; 543632fba14fSHong Zhang } 54379566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5438109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5440109e0772SStefano Zampini } 544132fba14fSHong Zhang *A_loc = aloc[0]; 54429566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 544348a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 544448a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 544732fba14fSHong Zhang } 544832fba14fSHong Zhang 54495c65b9ecSFande Kong /* 54505c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54515c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54525c65b9ecSFande Kong * on a global size. 54535c65b9ecSFande Kong * */ 5454ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5455d71ae5a4SJacob Faibussowitsch { 54565c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 54575c65b9ecSFande Kong Mat_SeqAIJ *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth; 5458131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5459131c27b5Sprj- PetscMPIInt owner; 54605c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54615c65b9ecSFande Kong const PetscInt *lrowindices; 54625c65b9ecSFande Kong PetscSF sf, osf; 54635c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54645c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54655c65b9ecSFande Kong MPI_Comm comm; 54665c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5467fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54685c65b9ecSFande Kong 54695c65b9ecSFande Kong PetscFunctionBegin; 54709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54715c65b9ecSFande Kong /* plocalsize is the number of roots 54725c65b9ecSFande Kong * nrows is the number of leaves 54735c65b9ecSFande Kong * */ 54749566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54785c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54795c65b9ecSFande Kong /* Find a remote index and an owner for a row 54805c65b9ecSFande Kong * The row could be local or remote 54815c65b9ecSFande Kong * */ 548234bcad68SFande Kong owner = 0; 548334bcad68SFande Kong lidx = 0; 54849566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54855c65b9ecSFande Kong iremote[i].index = lidx; 54865c65b9ecSFande Kong iremote[i].rank = owner; 54875c65b9ecSFande Kong } 54885c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54899566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5490f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54915c65b9ecSFande Kong * offsets 54925c65b9ecSFande Kong * */ 54939566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54949566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54959566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5496bc8e477aSFande Kong 54979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54989566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55005c65b9ecSFande Kong roffsets[0] = 0; 55015c65b9ecSFande Kong roffsets[1] = 0; 55025c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55034cf0e950SBarry Smith /* diagonal */ 55045c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55054cf0e950SBarry Smith /* off-diagonal */ 55065c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55075c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55085c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55095c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55105c65b9ecSFande Kong } 55119566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55135c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55149566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55159566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55169566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55189566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55199566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55209566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55215c65b9ecSFande Kong dntotalcols = 0; 55225c65b9ecSFande Kong ontotalcols = 0; 5523bc8e477aSFande Kong ncol = 0; 55245c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55255c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5526bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55274cf0e950SBarry Smith /* diagonal */ 55285c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55294cf0e950SBarry Smith /* off-diagonal */ 55305c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55315c65b9ecSFande Kong } 55325c65b9ecSFande Kong /* We do not need to figure the right number of columns 55335c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55345c65b9ecSFande Kong * */ 55359566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55369566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55379566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55385c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55394cf0e950SBarry Smith /* diagonal */ 55409566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55414cf0e950SBarry Smith /* off-diagonal */ 55429566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55434cf0e950SBarry Smith /* diagonal */ 55449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55454cf0e950SBarry Smith /* off-diagonal */ 55469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55475c65b9ecSFande Kong dntotalcols = 0; 55485c65b9ecSFande Kong ontotalcols = 0; 55495c65b9ecSFande Kong ntotalcols = 0; 55505c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 555134bcad68SFande Kong owner = 0; 55529566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55535c65b9ecSFande Kong /* Set iremote for diag matrix */ 55545c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55555c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55565c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55575c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55585c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55595c65b9ecSFande Kong } 55604cf0e950SBarry Smith /* off-diagonal */ 55615c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55625c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55635c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55645c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55655c65b9ecSFande Kong } 55665c65b9ecSFande Kong } 55679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55689566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55699566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55715c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55725c65b9ecSFande Kong * Diag matrix 55735c65b9ecSFande Kong * */ 55749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55759566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55769566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55775c65b9ecSFande Kong 55789566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55794cf0e950SBarry Smith /* off-diagonal */ 55809566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55819566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55829566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55854cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55895c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55905c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55925c65b9ecSFande Kong /* We want P_oth store global indices */ 55939566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55945c65b9ecSFande Kong /* Use memory scalable approach */ 55959566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55969566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55979566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55995c65b9ecSFande Kong /* Convert back to local indices */ 56005c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56025c65b9ecSFande Kong nout = 0; 56039566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 560408401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56065c65b9ecSFande Kong /* Exchange values */ 56079566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56089566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56115c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56125c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56155c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56169566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56179566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56189566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56215c65b9ecSFande Kong } 56225c65b9ecSFande Kong 56235c65b9ecSFande Kong /* 56245c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56255c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56265c65b9ecSFande Kong * */ 5627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5628d71ae5a4SJacob Faibussowitsch { 56295c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5630bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5631bc8e477aSFande Kong IS rows, map; 5632bc8e477aSFande Kong PetscHMapI hamp; 5633bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56345c65b9ecSFande Kong MPI_Comm comm; 56355c65b9ecSFande Kong PetscSF sf, osf; 5636bc8e477aSFande Kong PetscBool has; 56375c65b9ecSFande Kong 56385c65b9ecSFande Kong PetscFunctionBegin; 56399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56409566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56415c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56425c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56435c65b9ecSFande Kong * */ 56445c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56455c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5646eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5648bc8e477aSFande Kong count = 0; 5649bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5650bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5651bc8e477aSFande Kong key = a->garray[i] / dof; 56529566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5653bc8e477aSFande Kong if (!has) { 5654bc8e477aSFande Kong mapping[i] = count; 56559566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5656bc8e477aSFande Kong } else { 5657bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5658bc8e477aSFande Kong mapping[i] = count - 1; 56595c65b9ecSFande Kong } 5660bc8e477aSFande Kong } 56619566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56629566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5663eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56649566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56655c65b9ecSFande Kong off = 0; 56669566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56679566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56689566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56705c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56719566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56729566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56739566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56765c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56775c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 567835cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5679fff043a9SJunchao Zhang */ 5680fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5681fff043a9SJunchao Zhang 56829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56839566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 568408401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56855c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56865c65b9ecSFande Kong /* Update values in place */ 56879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56899566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56956718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56969566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56985c65b9ecSFande Kong } 56995c65b9ecSFande Kong 570025616d81SHong Zhang /*@C 570120f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 570225616d81SHong Zhang 5703c3339decSBarry Smith Collective 570425616d81SHong Zhang 570525616d81SHong Zhang Input Parameters: 570611a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 570711a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 570811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 570925616d81SHong Zhang 5710f1a722f8SMatthew G. Knepley Output Parameters: 571127430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 571227430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5713f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 571425616d81SHong Zhang 571525616d81SHong Zhang Level: developer 571625616d81SHong Zhang 571720f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 571825616d81SHong Zhang @*/ 5719d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5720d71ae5a4SJacob Faibussowitsch { 5721899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5722b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 572325616d81SHong Zhang IS isrowb, iscolb; 57240298fd71SBarry Smith Mat *bseq = NULL; 572525616d81SHong Zhang 572625616d81SHong Zhang PetscFunctionBegin; 572720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 572820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57299566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 573025616d81SHong Zhang 573125616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5732d0f46423SBarry Smith start = A->cmap->rstart; 573325616d81SHong Zhang cmap = a->garray; 5734d0f46423SBarry Smith nzA = a->A->cmap->n; 5735d0f46423SBarry Smith nzB = a->B->cmap->n; 57369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 573725616d81SHong Zhang ncols = 0; 57380390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 573925616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 574025616d81SHong Zhang else break; 574125616d81SHong Zhang } 574225616d81SHong Zhang imark = i; 57430390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57440390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57469566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 574725616d81SHong Zhang } else { 574808401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57499371c9d4SSatish Balay isrowb = *rowb; 57509371c9d4SSatish Balay iscolb = *colb; 57519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 575225616d81SHong Zhang bseq[0] = *B_seq; 575325616d81SHong Zhang } 57549566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 575525616d81SHong Zhang *B_seq = bseq[0]; 57569566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 575725616d81SHong Zhang if (!rowb) { 57589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 575925616d81SHong Zhang } else { 576025616d81SHong Zhang *rowb = isrowb; 576125616d81SHong Zhang } 576225616d81SHong Zhang if (!colb) { 57639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 576425616d81SHong Zhang } else { 576525616d81SHong Zhang *colb = iscolb; 576625616d81SHong Zhang } 57679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 576925616d81SHong Zhang } 5770429d309bSHong Zhang 5771f8487c73SHong Zhang /* 577227430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 577301b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5774429d309bSHong Zhang 5775c3339decSBarry Smith Collective 5776429d309bSHong Zhang 5777429d309bSHong Zhang Input Parameters: 577827430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 577927430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5780429d309bSHong Zhang 5781429d309bSHong Zhang Output Parameter: 57820298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57830298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57840298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5785598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5786429d309bSHong Zhang 578711a5261eSBarry Smith Developer Note: 578811a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57896eb45d04SBarry Smith for this matrix. This is not desirable.. 57906eb45d04SBarry Smith 5791429d309bSHong Zhang Level: developer 5792429d309bSHong Zhang 5793f8487c73SHong Zhang */ 5794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5795d71ae5a4SJacob Faibussowitsch { 5796899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 579787025532SHong Zhang Mat_SeqAIJ *b_oth; 57984b8d542aSHong Zhang VecScatter ctx; 5799ce94432eSBarry Smith MPI_Comm comm; 58003515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58013515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5802277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5803f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5804277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5805ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5806ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5807429d309bSHong Zhang 5808429d309bSHong Zhang PetscFunctionBegin; 58099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5811a7c7454dSHong Zhang 581220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 581320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5816a6b2eed2SHong Zhang 5817ec07b8f8SHong Zhang if (size == 1) { 5818ec07b8f8SHong Zhang startsj_s = NULL; 5819ec07b8f8SHong Zhang bufa_ptr = NULL; 582052f7967eSHong Zhang *B_oth = NULL; 58213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5822ec07b8f8SHong Zhang } 5823ec07b8f8SHong Zhang 5824fa83eaafSHong Zhang ctx = a->Mvctx; 58254b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58264b8d542aSHong Zhang 58279566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58283515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58299566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58309566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5832ddea5d60SJunchao Zhang rwaits = reqs; 5833*8e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5834429d309bSHong Zhang 5835b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5836429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5837a6b2eed2SHong Zhang /* i-array */ 5838a6b2eed2SHong Zhang /* post receives */ 58399566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5840a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 584174268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5842e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5844429d309bSHong Zhang } 5845a6b2eed2SHong Zhang 5846a6b2eed2SHong Zhang /* pack the outgoing message */ 58479566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58482205254eSKarl Rupp 58492205254eSKarl Rupp sstartsj[0] = 0; 58502205254eSKarl Rupp rstartsj[0] = 0; 5851a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58523515ee7fSJunchao Zhang if (nsends) { 58533515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58553515ee7fSJunchao Zhang } 5856a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58573515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5858e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 585987025532SHong Zhang for (j = 0; j < nrows; j++) { 5860d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5861e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58629566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58632205254eSKarl Rupp 5864e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58652205254eSKarl Rupp 5866e42f35eeSHong Zhang len += ncols; 58679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5868e42f35eeSHong Zhang } 5869a6b2eed2SHong Zhang k++; 5870429d309bSHong Zhang } 58719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58722205254eSKarl Rupp 5873dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5874429d309bSHong Zhang } 587587025532SHong Zhang /* recvs and sends of i-array are completed */ 58769566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58779566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5878e42f35eeSHong Zhang 5879a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 58809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 58819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5882a6b2eed2SHong Zhang 588387025532SHong Zhang /* create i-array of B_oth */ 58849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 58852205254eSKarl Rupp 588687025532SHong Zhang b_othi[0] = 0; 5887a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5888a6b2eed2SHong Zhang k = 0; 5889a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58903515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58913515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 589287025532SHong Zhang for (j = 0; j < nrows; j++) { 589387025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58949566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5895f91af8c7SBarry Smith k++; 5896a6b2eed2SHong Zhang } 5897dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5898a6b2eed2SHong Zhang } 58999566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5900a6b2eed2SHong Zhang 59016aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5904a6b2eed2SHong Zhang 590587025532SHong Zhang /* j-array */ 5906a6b2eed2SHong Zhang /* post receives of j-array */ 5907a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 590887025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5910a6b2eed2SHong Zhang } 5911e42f35eeSHong Zhang 5912e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59133515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5914a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5915e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5916a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 591787025532SHong Zhang for (j = 0; j < nrows; j++) { 5918d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5919e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59209566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5921ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59229566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5923e42f35eeSHong Zhang } 592487025532SHong Zhang } 59259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 592687025532SHong Zhang } 592787025532SHong Zhang 592887025532SHong Zhang /* recvs and sends of j-array are completed */ 59299566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 593087025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5931b7f45c76SHong Zhang sstartsj = *startsj_s; 59321d79065fSBarry Smith rstartsj = *startsj_r; 593387025532SHong Zhang bufa = *bufa_ptr; 593487025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5936ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 593787025532SHong Zhang 593887025532SHong Zhang /* a-array */ 593987025532SHong Zhang /* post receives of a-array */ 594087025532SHong Zhang for (i = 0; i < nrecvs; i++) { 594187025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 594387025532SHong Zhang } 5944e42f35eeSHong Zhang 5945e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59463515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 594787025532SHong Zhang for (i = 0; i < nsends; i++) { 5948e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 594987025532SHong Zhang bufA = bufa + sstartsj[i]; 595087025532SHong Zhang for (j = 0; j < nrows; j++) { 5951d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5952e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59539566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5954ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59559566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5956e42f35eeSHong Zhang } 5957a6b2eed2SHong Zhang } 59589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5959a6b2eed2SHong Zhang } 596087025532SHong Zhang /* recvs and sends of a-array are completed */ 59619566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59629566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5963a6b2eed2SHong Zhang 596487025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5965a6b2eed2SHong Zhang /* put together the new matrix */ 59669566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5967a6b2eed2SHong Zhang 5968a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5969a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 597087025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5971e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5972e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 597387025532SHong Zhang b_oth->nonew = 0; 5974a6b2eed2SHong Zhang 59759566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5976b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59779566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59789566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5979dea91ad1SHong Zhang } else { 5980b7f45c76SHong Zhang *startsj_s = sstartsj; 59811d79065fSBarry Smith *startsj_r = rstartsj; 598287025532SHong Zhang *bufa_ptr = bufa; 598387025532SHong Zhang } 5984fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5986dea91ad1SHong Zhang } 59873515ee7fSJunchao Zhang 59889566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59899566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59909566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5992429d309bSHong Zhang } 5993ccd8e176SBarry Smith 5994cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5995cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5996ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59979779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5998a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5999191b95cbSRichard Tran Mills #endif 6000ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6001cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60025d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6003cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60045d7652ecSHong Zhang #endif 6005d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6006d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6007d24d4204SJose E. Roman #endif 600863c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 600963c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 601063c07aadSStefano Zampini #endif 60113338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60123338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60133338378cSStefano Zampini #endif 6014d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6015d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6016d5e393b6SSuyash Tandon #endif 60173d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60183d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60193d0639e7SStefano Zampini #endif 6020d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60214222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60224222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 602317667f90SBarry Smith 6024fc4dec0aSBarry Smith /* 6025fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6026fc4dec0aSBarry Smith 6027fc4dec0aSBarry Smith n p p 60282da392ccSBarry Smith [ ] [ ] [ ] 60292da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60302da392ccSBarry Smith [ ] [ ] [ ] 6031fc4dec0aSBarry Smith 6032fc4dec0aSBarry Smith */ 6033d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6034d71ae5a4SJacob Faibussowitsch { 6035fc4dec0aSBarry Smith Mat At, Bt, Ct; 6036fc4dec0aSBarry Smith 6037fc4dec0aSBarry Smith PetscFunctionBegin; 60389566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60399566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60409566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60437fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60449566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60459566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6047fc4dec0aSBarry Smith } 6048fc4dec0aSBarry Smith 6049d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6050d71ae5a4SJacob Faibussowitsch { 60516718818eSStefano Zampini PetscBool cisdense; 6052fc4dec0aSBarry Smith 6053fc4dec0aSBarry Smith PetscFunctionBegin; 605408401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60569566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6057d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 605848a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60599566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6060f75ecaa4SHong Zhang 60614222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6063fc4dec0aSBarry Smith } 6064fc4dec0aSBarry Smith 6065d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6066d71ae5a4SJacob Faibussowitsch { 60674222ddf1SHong Zhang Mat_Product *product = C->product; 60684222ddf1SHong Zhang Mat A = product->A, B = product->B; 6069fc4dec0aSBarry Smith 6070fc4dec0aSBarry Smith PetscFunctionBegin; 607120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 607220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60734222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60744222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6076fc4dec0aSBarry Smith } 6077fc4dec0aSBarry Smith 6078d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6079d71ae5a4SJacob Faibussowitsch { 60804222ddf1SHong Zhang Mat_Product *product = C->product; 60814222ddf1SHong Zhang 60824222ddf1SHong Zhang PetscFunctionBegin; 608348a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60854222ddf1SHong Zhang } 6086394ed5ebSJunchao Zhang 608727430b45SBarry Smith /* 608827430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6089394ed5ebSJunchao Zhang 6090394ed5ebSJunchao Zhang Input Parameters: 6091394ed5ebSJunchao Zhang 6092651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6093651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6094394ed5ebSJunchao Zhang 6095158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6096394ed5ebSJunchao Zhang 6097394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6098394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6099394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6100394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6101394ed5ebSJunchao Zhang 6102394ed5ebSJunchao Zhang Similar for Set2. 6103394ed5ebSJunchao Zhang 6104394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6105394ed5ebSJunchao Zhang 6106158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6107394ed5ebSJunchao Zhang 6108394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6109394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6110394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6111394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6112394ed5ebSJunchao Zhang */ 6113d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6114d71ae5a4SJacob Faibussowitsch { 6115394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6116394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6117394ed5ebSJunchao Zhang 6118394ed5ebSJunchao Zhang PetscFunctionBegin; 61199566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6120394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6121394ed5ebSJunchao Zhang i[0] = 0; 6122394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6123394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6124394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6125394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6126394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6127394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6128394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6129394ed5ebSJunchao Zhang j[t] = j1[b1]; 6130394ed5ebSJunchao Zhang imap1[t1] = t; 6131394ed5ebSJunchao Zhang imap2[t2] = t; 6132394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6133394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61349371c9d4SSatish Balay t1++; 61359371c9d4SSatish Balay t2++; 61369371c9d4SSatish Balay t++; 6137394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6138394ed5ebSJunchao Zhang j[t] = j1[b1]; 6139394ed5ebSJunchao Zhang imap1[t1] = t; 6140394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61419371c9d4SSatish Balay t1++; 61429371c9d4SSatish Balay t++; 6143394ed5ebSJunchao Zhang } else { 6144394ed5ebSJunchao Zhang j[t] = j2[b2]; 6145394ed5ebSJunchao Zhang imap2[t2] = t; 6146394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61479371c9d4SSatish Balay t2++; 61489371c9d4SSatish Balay t++; 6149394ed5ebSJunchao Zhang } 6150394ed5ebSJunchao Zhang } 6151394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6152394ed5ebSJunchao Zhang while (b1 < e1) { 6153394ed5ebSJunchao Zhang j[t] = j1[b1]; 6154394ed5ebSJunchao Zhang imap1[t1] = t; 6155394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61569371c9d4SSatish Balay t1++; 61579371c9d4SSatish Balay t++; 6158394ed5ebSJunchao Zhang } 6159394ed5ebSJunchao Zhang while (b2 < e2) { 6160394ed5ebSJunchao Zhang j[t] = j2[b2]; 6161394ed5ebSJunchao Zhang imap2[t2] = t; 6162394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61639371c9d4SSatish Balay t2++; 61649371c9d4SSatish Balay t++; 6165394ed5ebSJunchao Zhang } 6166394ed5ebSJunchao Zhang i[r + 1] = t; 6167394ed5ebSJunchao Zhang } 61683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6169394ed5ebSJunchao Zhang } 6170394ed5ebSJunchao Zhang 617127430b45SBarry Smith /* 617227430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6173394ed5ebSJunchao Zhang 6174394ed5ebSJunchao Zhang Input Parameters: 6175394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6176394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6177394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6178394ed5ebSJunchao Zhang 6179394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6180394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6181394ed5ebSJunchao Zhang 6182394ed5ebSJunchao Zhang Output Parameters: 6183394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6184394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6185394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6186394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6187394ed5ebSJunchao Zhang 6188394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6189158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6190158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6191394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6192394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6193394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6194394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6195394ed5ebSJunchao Zhang 6196394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6197394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6198394ed5ebSJunchao Zhang 6199394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6200394ed5ebSJunchao Zhang 6201158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6202394ed5ebSJunchao Zhang */ 6203d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6204d71ae5a4SJacob Faibussowitsch { 6205394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6206394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6207394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6208394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6209394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6210394ed5ebSJunchao Zhang 6211394ed5ebSJunchao Zhang PetscFunctionBegin; 62129566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62139566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6214394ed5ebSJunchao Zhang m = rend - rstart; 6215394ed5ebSJunchao Zhang 6216651b1cf9SStefano Zampini /* Skip negative rows */ 6217651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62189371c9d4SSatish Balay if (i[k] >= 0) break; 6219394ed5ebSJunchao Zhang 6220394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6221394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6222394ed5ebSJunchao Zhang */ 6223394ed5ebSJunchao Zhang while (k < n) { 6224394ed5ebSJunchao Zhang row = i[k]; 6225394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62269371c9d4SSatish Balay for (s = k; s < n; s++) 62279371c9d4SSatish Balay if (i[s] != row) break; 6228651b1cf9SStefano Zampini 6229651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6230394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6231651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 623254c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6233394ed5ebSJunchao Zhang } 62349566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6235158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6236394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6237394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6238394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6239394ed5ebSJunchao Zhang 6240394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6241394ed5ebSJunchao Zhang Atot += mid - k; 6242394ed5ebSJunchao Zhang Btot += s - mid; 6243394ed5ebSJunchao Zhang 6244651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6245394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6246394ed5ebSJunchao Zhang col = j[p]; 62479371c9d4SSatish Balay do { 6248651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62499371c9d4SSatish Balay p++; 6250651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6251394ed5ebSJunchao Zhang Annz++; 6252394ed5ebSJunchao Zhang } 6253394ed5ebSJunchao Zhang 6254651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6255394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6256394ed5ebSJunchao Zhang col = j[p]; 6257d71ae5a4SJacob Faibussowitsch do { 6258d71ae5a4SJacob Faibussowitsch p++; 6259d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6260394ed5ebSJunchao Zhang Bnnz++; 6261394ed5ebSJunchao Zhang } 6262394ed5ebSJunchao Zhang k = s; 6263394ed5ebSJunchao Zhang } 6264394ed5ebSJunchao Zhang 6265394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6266158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6267158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6268158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6269158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6270394ed5ebSJunchao Zhang 62716aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6272394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6273394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6274394ed5ebSJunchao Zhang k = rowBegin[r]; 6275394ed5ebSJunchao Zhang mid = rowMid[r]; 6276394ed5ebSJunchao Zhang s = rowEnd[r]; 6277*8e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 6278*8e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6279394ed5ebSJunchao Zhang Atot += mid - k; 6280394ed5ebSJunchao Zhang Btot += s - mid; 6281394ed5ebSJunchao Zhang 6282394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6283394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6284394ed5ebSJunchao Zhang col = j[p]; 6285394ed5ebSJunchao Zhang q = p; 6286d71ae5a4SJacob Faibussowitsch do { 6287d71ae5a4SJacob Faibussowitsch p++; 6288d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6289394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6290394ed5ebSJunchao Zhang Annz++; 6291394ed5ebSJunchao Zhang } 6292394ed5ebSJunchao Zhang 6293394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6294394ed5ebSJunchao Zhang col = j[p]; 6295394ed5ebSJunchao Zhang q = p; 6296d71ae5a4SJacob Faibussowitsch do { 6297d71ae5a4SJacob Faibussowitsch p++; 6298d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6299394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6300394ed5ebSJunchao Zhang Bnnz++; 6301394ed5ebSJunchao Zhang } 6302394ed5ebSJunchao Zhang } 6303394ed5ebSJunchao Zhang /* Output */ 6304394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6305394ed5ebSJunchao Zhang *Annz_ = Annz; 6306394ed5ebSJunchao Zhang *Atot_ = Atot; 6307394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6308394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6309394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6310394ed5ebSJunchao Zhang *Btot_ = Btot; 6311394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6313394ed5ebSJunchao Zhang } 6314394ed5ebSJunchao Zhang 631527430b45SBarry Smith /* 631627430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6317158ec288SJunchao Zhang 6318158ec288SJunchao Zhang Input Parameters: 6319158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6320158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6321158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6322651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6323158ec288SJunchao Zhang 6324158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6325158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6326158ec288SJunchao Zhang 6327158ec288SJunchao Zhang Example: 6328158ec288SJunchao Zhang nnz1 = 4 6329158ec288SJunchao Zhang nnz = 6 6330158ec288SJunchao Zhang imap = [1,3,4,5] 6331158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6332158ec288SJunchao Zhang then, 6333158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6334158ec288SJunchao Zhang */ 6335d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6336d71ae5a4SJacob Faibussowitsch { 6337158ec288SJunchao Zhang PetscCount k, p; 6338158ec288SJunchao Zhang 6339158ec288SJunchao Zhang PetscFunctionBegin; 6340158ec288SJunchao Zhang jmap_new[0] = 0; 6341158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6342158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6343158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6344158ec288SJunchao Zhang } 6345158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6347158ec288SJunchao Zhang } 6348158ec288SJunchao Zhang 63492c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63502c4ab24aSJunchao Zhang { 63512c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63522c4ab24aSJunchao Zhang 63532c4ab24aSJunchao Zhang PetscFunctionBegin; 63542c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63552c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63562c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63572c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63582c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63592c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63602c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63612c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63622c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63632c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63642c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63652c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63662c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63672c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63682c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63692c4ab24aSJunchao Zhang } 63702c4ab24aSJunchao Zhang 6371d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6372d71ae5a4SJacob Faibussowitsch { 6373394ed5ebSJunchao Zhang MPI_Comm comm; 6374394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6375394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6376394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6377394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63782c4ab24aSJunchao Zhang PetscContainer container; 63792c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6380394ed5ebSJunchao Zhang 6381394ed5ebSJunchao Zhang PetscFunctionBegin; 63829566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6384cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6385eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6386cbc6b225SStefano Zampini #else 63879566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6388cbc6b225SStefano Zampini #endif 63899566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6390cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6391cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6392cbc6b225SStefano Zampini 63939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63989566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63999566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64019566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6402394ed5ebSJunchao Zhang 64036aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6404394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6405394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6406e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6407e8729f6fSJunchao Zhang 6408e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6409394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6410394ed5ebSJunchao Zhang 6411394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6412394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6413394ed5ebSJunchao Zhang will have positive row indices. 6414394ed5ebSJunchao Zhang */ 6415394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6416394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6417394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6418f7d195e4SLawrence Mitchell else { 6419f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6420f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6421f7d195e4SLawrence Mitchell } 6422394ed5ebSJunchao Zhang } 6423394ed5ebSJunchao Zhang 6424da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64259566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6426651b1cf9SStefano Zampini 6427651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6428651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64299371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6430651b1cf9SStefano Zampini PetscInt i1start = k; 6431651b1cf9SStefano Zampini 64329566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6433394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6434394ed5ebSJunchao Zhang 6435394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6436394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6437394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6438394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6439394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6440394ed5ebSJunchao Zhang const PetscInt *ranges; 6441394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6442394ed5ebSJunchao Zhang 64439566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64449566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6445394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6446394ed5ebSJunchao Zhang PetscMPIInt owner; 6447394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6448cbc6b225SStefano Zampini 6449394ed5ebSJunchao Zhang /* Locate a row range */ 6450394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64519566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6452394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6453394ed5ebSJunchao Zhang 6454394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64559566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6456394ed5ebSJunchao Zhang 6457394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6458394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6459394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6460394ed5ebSJunchao Zhang PetscInt *nentries2; 6461394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6462cbc6b225SStefano Zampini 64639566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64659566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64669566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6467394ed5ebSJunchao Zhang sendto = sendto2; 6468394ed5ebSJunchao Zhang nentries = nentries2; 6469394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6470394ed5ebSJunchao Zhang } 6471394ed5ebSJunchao Zhang sendto[nsend] = owner; 6472394ed5ebSJunchao Zhang nentries[nsend] = p - k; 64739566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6474394ed5ebSJunchao Zhang nsend++; 6475394ed5ebSJunchao Zhang k = p; 6476394ed5ebSJunchao Zhang } 6477394ed5ebSJunchao Zhang 6478394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6479394ed5ebSJunchao Zhang PetscSF sf1; 6480394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6481394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6482394ed5ebSJunchao Zhang PetscInt *offsets; 6483394ed5ebSJunchao Zhang PetscSFNode *iremote; 6484394ed5ebSJunchao Zhang 64859566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6488394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6489394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6490394ed5ebSJunchao Zhang iremote[k].index = 0; 6491394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 649254c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6493394ed5ebSJunchao Zhang } 64949566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64959566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64969566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64979566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 649863a3b9bcSJacob Faibussowitsch PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem); 6499394ed5ebSJunchao Zhang 6500394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6501394ed5ebSJunchao Zhang PetscSF sf2; 6502394ed5ebSJunchao Zhang nroots = nroots2; 6503394ed5ebSJunchao Zhang nleaves = nleaves2; 65049566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65059566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6507394ed5ebSJunchao Zhang p = 0; 6508394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 650954c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6510394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6511394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6512394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6513394ed5ebSJunchao Zhang } 6514394ed5ebSJunchao Zhang } 65159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6516394ed5ebSJunchao Zhang 6517394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6518394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6519394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65209566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 65219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 65229566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE)); 65239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 65249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE)); 6525394ed5ebSJunchao Zhang 65269566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65279566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6528394ed5ebSJunchao Zhang 6529394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6530394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65319566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6532394ed5ebSJunchao Zhang 6533651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6534651b1cf9SStefano Zampini PetscCount *Cperm1; 6535651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6536651b1cf9SStefano Zampini PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves)); 6537651b1cf9SStefano Zampini 6538651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6539651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6540651b1cf9SStefano Zampini PetscBool hypre; 6541651b1cf9SStefano Zampini const char *name; 6542651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6543651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6544651b1cf9SStefano Zampini if (hypre) { 6545651b1cf9SStefano Zampini PetscInt *minj; 6546651b1cf9SStefano Zampini PetscBT hasdiag; 6547651b1cf9SStefano Zampini 6548651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6549651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6550651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6551651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6552651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6553651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6554651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6555651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6556651b1cf9SStefano Zampini } 6557651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6558651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6559651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6560651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6561651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6562651b1cf9SStefano Zampini } 6563651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6564651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6565651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6566651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6567651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6568651b1cf9SStefano Zampini } 6569651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6570651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6571651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6572651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6573651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6574651b1cf9SStefano Zampini } 6575651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6576651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6577651b1cf9SStefano Zampini } 6578651b1cf9SStefano Zampini 6579651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6580651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6581651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6582651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6583394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6584394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6585394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6586394ed5ebSJunchao Zhang 6587651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65889566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6589651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65909566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6591394ed5ebSJunchao Zhang 6592394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6593394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6594394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6595394ed5ebSJunchao Zhang 65969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6600394ed5ebSJunchao Zhang 6601394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6602158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6603158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6604158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6605158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6606394ed5ebSJunchao Zhang 66079566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66089566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6609158ec288SJunchao Zhang 6610158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6611158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6612158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6613158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6614158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6615158ec288SJunchao Zhang 6616158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6617158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6618158ec288SJunchao Zhang 6619158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6620158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6621158ec288SJunchao Zhang 6622158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6623158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6624158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6625158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66269566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66279566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6628e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66299566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6630394ed5ebSJunchao Zhang 6631158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6632158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6633158ec288SJunchao Zhang 6634394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6635394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6636394ed5ebSJunchao Zhang PetscInt *Aj_new; 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66399566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6640394ed5ebSJunchao Zhang Aj = Aj_new; 6641394ed5ebSJunchao Zhang } 6642394ed5ebSJunchao Zhang 6643394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6644394ed5ebSJunchao Zhang PetscInt *Bj_new; 66459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66479566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6648394ed5ebSJunchao Zhang Bj = Bj_new; 6649394ed5ebSJunchao Zhang } 6650394ed5ebSJunchao Zhang 6651cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6652394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6653cbc6b225SStefano Zampini MatType rtype; 6654394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6655cf8ba265SJunchao Zhang PetscObjectState state; 66569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66579566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6658394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66599371c9d4SSatish Balay if (cstart) { 66609371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66619371c9d4SSatish Balay } 66629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->A)); 66639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 66649566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 66659566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66669566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66679566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66685bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6669cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6670cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6671cbc6b225SStefano Zampini 6672394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6673394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6674394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6675394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6676394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6677394ed5ebSJunchao Zhang 6678cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66799566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66809566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66829566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6683cbc6b225SStefano Zampini 66842c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66852c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66862c4ab24aSJunchao Zhang coo->n = coo_n; 66872c4ab24aSJunchao Zhang coo->sf = sf2; 66882c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66892c4ab24aSJunchao Zhang coo->recvlen = nroots; 66902c4ab24aSJunchao Zhang coo->Annz = Annz; 66912c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66922c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66932c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66942c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 66952c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 66962c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 66972c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 66982c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 66992c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67002c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67012c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67022c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67032c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67042c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67052c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67062c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67072c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67082c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67092c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67102c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67112c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67122c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67132c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67142c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67152c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6717394ed5ebSJunchao Zhang } 6718394ed5ebSJunchao Zhang 6719d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6720d71ae5a4SJacob Faibussowitsch { 6721394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6722394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6723394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67242c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67252c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67262c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67272c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67282c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67292c4ab24aSJunchao Zhang PetscContainer container; 67302c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6731394ed5ebSJunchao Zhang 6732394ed5ebSJunchao Zhang PetscFunctionBegin; 67332c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67342c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67352c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67362c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67372c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67382c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67392c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67402c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67412c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67422c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67432c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67442c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67452c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67462c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67472c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67482c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67492c4ab24aSJunchao Zhang 67509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6752394ed5ebSJunchao Zhang 6753394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67542c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6755394ed5ebSJunchao Zhang 6756394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67572c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6758394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67592c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6760da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6761158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6762158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6763394ed5ebSJunchao Zhang } 67642c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6765158ec288SJunchao Zhang PetscScalar sum = 0.0; 6766158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6767158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6768394ed5ebSJunchao Zhang } 67692c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6770394ed5ebSJunchao Zhang 6771394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67722c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6773394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6774394ed5ebSJunchao Zhang } 67752c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6776394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6777394ed5ebSJunchao Zhang } 67789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6781394ed5ebSJunchao Zhang } 6782394ed5ebSJunchao Zhang 6783ccd8e176SBarry Smith /*MC 6784ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6785ccd8e176SBarry Smith 6786ccd8e176SBarry Smith Options Database Keys: 678711a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6788ccd8e176SBarry Smith 6789ccd8e176SBarry Smith Level: beginner 67900cd7f59aSBarry Smith 67910cd7f59aSBarry Smith Notes: 67922ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67930cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67940cd7f59aSBarry Smith in the matrix 67950cd7f59aSBarry Smith 679611a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 679711a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6798ccd8e176SBarry Smith 67991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6800ccd8e176SBarry Smith M*/ 6801d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6802d71ae5a4SJacob Faibussowitsch { 6803ccd8e176SBarry Smith Mat_MPIAIJ *b; 6804ccd8e176SBarry Smith PetscMPIInt size; 6805ccd8e176SBarry Smith 6806ccd8e176SBarry Smith PetscFunctionBegin; 68079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68082205254eSKarl Rupp 68094dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6810ccd8e176SBarry Smith B->data = (void *)b; 6811aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6812ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6813ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6814ccd8e176SBarry Smith b->size = size; 68152205254eSKarl Rupp 68169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6817ccd8e176SBarry Smith 6818ccd8e176SBarry Smith /* build cache for off array entries formed */ 68199566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68202205254eSKarl Rupp 6821ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6822f4259b30SLisandro Dalcin b->colmap = NULL; 6823f4259b30SLisandro Dalcin b->garray = NULL; 6824ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6825ccd8e176SBarry Smith 6826ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68270298fd71SBarry Smith b->lvec = NULL; 68280298fd71SBarry Smith b->Mvctx = NULL; 6829ccd8e176SBarry Smith 6830ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6831f4259b30SLisandro Dalcin b->rowindices = NULL; 6832f4259b30SLisandro Dalcin b->rowvalues = NULL; 6833ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6834ccd8e176SBarry Smith 6835f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68360298fd71SBarry Smith b->spptr = NULL; 6837f60c3dc2SHong Zhang 68389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68483d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68503d0639e7SStefano Zampini #endif 6851d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6852d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6853d5e393b6SSuyash Tandon #endif 68543d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68563d0639e7SStefano Zampini #endif 68579779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6859191b95cbSRichard Tran Mills #endif 68609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68645d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68665d7652ecSHong Zhang #endif 6867d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 68689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6869d24d4204SJose E. Roman #endif 68709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68723dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68753dad0653Sstefano_zampini #endif 68769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68809566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6882ccd8e176SBarry Smith } 688381824310SBarry Smith 6884cce60c4dSBarry Smith /*@C 688511a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 688603bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 688703bfb495SBarry Smith 6888d083f849SBarry Smith Collective 688903bfb495SBarry Smith 689003bfb495SBarry Smith Input Parameters: 689103bfb495SBarry Smith + comm - MPI communicator 689211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 689303bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 689411a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 68952ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 68962ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 68972ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6898483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 689904ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 690003bfb495SBarry Smith . a - matrix values 6901483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69022ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 690303bfb495SBarry Smith - oa - matrix values 690403bfb495SBarry Smith 690503bfb495SBarry Smith Output Parameter: 690603bfb495SBarry Smith . mat - the matrix 690703bfb495SBarry Smith 690803bfb495SBarry Smith Level: advanced 690903bfb495SBarry Smith 691003bfb495SBarry Smith Notes: 69112ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user 6912292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 691303bfb495SBarry Smith 69142ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 691503bfb495SBarry Smith 69162ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 691703bfb495SBarry Smith 69187b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69197b55108eSBarry Smith 6920dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6921dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6922dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6923dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 692411a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6925dca341c0SJed Brown communication if it is known that only local entries will be set. 692603bfb495SBarry Smith 69271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6928db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69292b26979fSBarry Smith @*/ 6930d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6931d71ae5a4SJacob Faibussowitsch { 693203bfb495SBarry Smith Mat_MPIAIJ *maij; 693303bfb495SBarry Smith 693403bfb495SBarry Smith PetscFunctionBegin; 693508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6936aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6937aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69389566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69409566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 694103bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69422205254eSKarl Rupp 69438d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 694403bfb495SBarry Smith 69459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 694703bfb495SBarry Smith 69489566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69499566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 695003bfb495SBarry Smith 69519566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69549566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69559566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 695703bfb495SBarry Smith } 695803bfb495SBarry Smith 69594e84afc0SStefano Zampini typedef struct { 69604e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69614e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69624e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69634e84afc0SStefano Zampini 69644e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69654e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69664e84afc0SStefano Zampini PetscScalar *bufa; 69674e84afc0SStefano Zampini Mat P_oth; 69684e84afc0SStefano Zampini 69694e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6970ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69714e84afc0SStefano Zampini 6972ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69734e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69744e84afc0SStefano Zampini of the temporary storage */ 69754e84afc0SStefano Zampini PetscBool reusesym; 69764e84afc0SStefano Zampini 69774e84afc0SStefano Zampini /* support for COO values insertion */ 6978ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6979ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6980ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6981ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6982c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6983c215019aSStefano Zampini PetscMemType mtype; 69844e84afc0SStefano Zampini 69854e84afc0SStefano Zampini /* customization */ 69864e84afc0SStefano Zampini PetscBool abmerge; 6987abb89eb1SStefano Zampini PetscBool P_oth_bind; 69884e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69894e84afc0SStefano Zampini 6990ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 6991d71ae5a4SJacob Faibussowitsch { 69924e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 69934e84afc0SStefano Zampini PetscInt i; 69944e84afc0SStefano Zampini 69954e84afc0SStefano Zampini PetscFunctionBegin; 69969566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 69979566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 69989566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 69999566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70019566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 700348a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70049566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70059566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70069566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70079566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70089566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70099566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70114e84afc0SStefano Zampini } 70124e84afc0SStefano Zampini 7013fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7014fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7015fff043a9SJunchao Zhang */ 7016d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7017d71ae5a4SJacob Faibussowitsch { 7018c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7019c215019aSStefano Zampini 7020c215019aSStefano Zampini PetscFunctionBegin; 70219566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7022c215019aSStefano Zampini if (f) { 70239566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7024c215019aSStefano Zampini } else { 7025c215019aSStefano Zampini const PetscScalar *vv; 7026c215019aSStefano Zampini 70279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7028c215019aSStefano Zampini if (n && idx) { 7029c215019aSStefano Zampini PetscScalar *w = v; 7030c215019aSStefano Zampini const PetscInt *oi = idx; 7031c215019aSStefano Zampini PetscInt j; 7032c215019aSStefano Zampini 7033c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7034c215019aSStefano Zampini } else { 70359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7036c215019aSStefano Zampini } 70379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7038c215019aSStefano Zampini } 70393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7040c215019aSStefano Zampini } 7041c215019aSStefano Zampini 7042d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7043d71ae5a4SJacob Faibussowitsch { 70444e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70454e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70464e84afc0SStefano Zampini 70474e84afc0SStefano Zampini PetscFunctionBegin; 70484e84afc0SStefano Zampini MatCheckProduct(C, 1); 704928b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70504e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70514e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 705248a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 705348a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70544e84afc0SStefano Zampini } 70554e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7056abb89eb1SStefano Zampini 7057abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 705808401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70599566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7060abb89eb1SStefano Zampini } 70614e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70624e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 70634e84afc0SStefano Zampini 70644e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70654e84afc0SStefano Zampini if (noff) { 7066c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7067c215019aSStefano Zampini 70689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70704e84afc0SStefano Zampini n_o += noff; 70714e84afc0SStefano Zampini n_d += nown; 70724e84afc0SStefano Zampini } else { 7073c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7074c215019aSStefano Zampini 70759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70764e84afc0SStefano Zampini n_d += mm->nz; 70774e84afc0SStefano Zampini } 70784e84afc0SStefano Zampini } 7079c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70809566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70819566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70824e84afc0SStefano Zampini } 70839566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70854e84afc0SStefano Zampini } 70864e84afc0SStefano Zampini 70874e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70884e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7089d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7090d71ae5a4SJacob Faibussowitsch { 70914e84afc0SStefano Zampini Mat_Product *product = C->product; 7092ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 70934e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 70944e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70954e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 70964e84afc0SStefano Zampini IS glob = NULL; 70974e84afc0SStefano Zampini const char *prefix; 70984e84afc0SStefano Zampini char pprefix[256]; 70994e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 710082a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 710182a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7102ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7103ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7104ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7105ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7106ddea5d60SJunchao Zhang 71074e84afc0SStefano Zampini MatProductType ptype; 7108d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71094e84afc0SStefano Zampini PetscMPIInt size; 71104e84afc0SStefano Zampini 71114e84afc0SStefano Zampini PetscFunctionBegin; 71124e84afc0SStefano Zampini MatCheckProduct(C, 1); 711328b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71144e84afc0SStefano Zampini ptype = product->type; 7115b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7116fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7117fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7118fa046f9fSJunchao Zhang } 71194e84afc0SStefano Zampini switch (ptype) { 71204e84afc0SStefano Zampini case MATPRODUCT_AB: 71214e84afc0SStefano Zampini A = product->A; 71224e84afc0SStefano Zampini P = product->B; 71234e84afc0SStefano Zampini m = A->rmap->n; 71244e84afc0SStefano Zampini n = P->cmap->n; 71254e84afc0SStefano Zampini M = A->rmap->N; 71264e84afc0SStefano Zampini N = P->cmap->N; 7127ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71284e84afc0SStefano Zampini break; 71294e84afc0SStefano Zampini case MATPRODUCT_AtB: 71304e84afc0SStefano Zampini P = product->A; 71314e84afc0SStefano Zampini A = product->B; 71324e84afc0SStefano Zampini m = P->cmap->n; 71334e84afc0SStefano Zampini n = A->cmap->n; 71344e84afc0SStefano Zampini M = P->cmap->N; 71354e84afc0SStefano Zampini N = A->cmap->N; 71364e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71374e84afc0SStefano Zampini break; 71384e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71394e84afc0SStefano Zampini A = product->A; 71404e84afc0SStefano Zampini P = product->B; 71414e84afc0SStefano Zampini m = P->cmap->n; 71424e84afc0SStefano Zampini n = P->cmap->n; 71434e84afc0SStefano Zampini M = P->cmap->N; 71444e84afc0SStefano Zampini N = P->cmap->N; 71454e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71464e84afc0SStefano Zampini break; 7147d71ae5a4SJacob Faibussowitsch default: 7148d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71494e84afc0SStefano Zampini } 71509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71514e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71524e84afc0SStefano Zampini 71534e84afc0SStefano Zampini /* defaults */ 71544e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71554e84afc0SStefano Zampini mp[i] = NULL; 71564e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71574e84afc0SStefano Zampini rmapt[i] = -1; 71584e84afc0SStefano Zampini cmapt[i] = -1; 71594e84afc0SStefano Zampini rmapa[i] = NULL; 71604e84afc0SStefano Zampini cmapa[i] = NULL; 71614e84afc0SStefano Zampini } 71624e84afc0SStefano Zampini 71634e84afc0SStefano Zampini /* customization */ 71649566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71654e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71664e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71674e84afc0SStefano Zampini if (product->api_user) { 7168d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71699566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71709566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7171d0609cedSBarry Smith PetscOptionsEnd(); 71724e84afc0SStefano Zampini } else { 7173d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71749566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71759566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7176d0609cedSBarry Smith PetscOptionsEnd(); 7177abb89eb1SStefano Zampini } 7178abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7179abb89eb1SStefano Zampini if (product->api_user) { 7180d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71819566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7182d0609cedSBarry Smith PetscOptionsEnd(); 7183abb89eb1SStefano Zampini } else { 7184d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71859566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7186d0609cedSBarry Smith PetscOptionsEnd(); 71874e84afc0SStefano Zampini } 71884e84afc0SStefano Zampini } 71894e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71904e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 71929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 71939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 71949566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 71959566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7196ddea5d60SJunchao Zhang 7197ddea5d60SJunchao Zhang cp = 0; 71984e84afc0SStefano Zampini switch (ptype) { 71994e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72009566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72014e84afc0SStefano Zampini 7202ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7203ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72044e84afc0SStefano Zampini /* P is product->B */ 72059566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72069566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72079566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72089566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72099566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72109566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72119566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72124e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72139566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72149566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72164e84afc0SStefano Zampini rmapt[cp] = 1; 72174e84afc0SStefano Zampini cmapt[cp] = 2; 72184e84afc0SStefano Zampini cmapa[cp] = globidx; 72194e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72204e84afc0SStefano Zampini cp++; 7221ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72229566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72239566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72249566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72259566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72269566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72279566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72284e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72299566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72309566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72314e84afc0SStefano Zampini rmapt[cp] = 1; 72324e84afc0SStefano Zampini cmapt[cp] = 1; 72334e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72344e84afc0SStefano Zampini cp++; 72359566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72369566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72379566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72389566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72399566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72409566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72414e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72429566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72439566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72444e84afc0SStefano Zampini rmapt[cp] = 1; 72454e84afc0SStefano Zampini cmapt[cp] = 2; 72464e84afc0SStefano Zampini cmapa[cp] = p->garray; 72474e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72484e84afc0SStefano Zampini cp++; 72494e84afc0SStefano Zampini } 7250ddea5d60SJunchao Zhang 7251ddea5d60SJunchao Zhang /* A_off * P_other */ 72524e84afc0SStefano Zampini if (mmdata->P_oth) { 72539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 72559566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 72569566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72579566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72589566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72599566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72609566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72619566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72629566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72634e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72649566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72659566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72664e84afc0SStefano Zampini rmapt[cp] = 1; 72674e84afc0SStefano Zampini cmapt[cp] = 2; 72684e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72694e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72704e84afc0SStefano Zampini cp++; 72714e84afc0SStefano Zampini } 72724e84afc0SStefano Zampini break; 7273ddea5d60SJunchao Zhang 72744e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72754e84afc0SStefano Zampini /* A is product->B */ 72769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7277ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72789566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72799566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72809566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72819566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72829566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72839566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72844e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72859566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72869566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72884e84afc0SStefano Zampini rmapt[cp] = 2; 72894e84afc0SStefano Zampini rmapa[cp] = globidx; 72904e84afc0SStefano Zampini cmapt[cp] = 2; 72914e84afc0SStefano Zampini cmapa[cp] = globidx; 72924e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72934e84afc0SStefano Zampini cp++; 72944e84afc0SStefano Zampini } else { 72959566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 72969566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72979566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72989566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72999566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73009566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73014e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73029566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73039566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73054e84afc0SStefano Zampini rmapt[cp] = 1; 73064e84afc0SStefano Zampini cmapt[cp] = 2; 73074e84afc0SStefano Zampini cmapa[cp] = globidx; 73084e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73094e84afc0SStefano Zampini cp++; 73109566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73119566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73129566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73139566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73149566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73159566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73164e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73179566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73189566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73194e84afc0SStefano Zampini rmapt[cp] = 2; 73204e84afc0SStefano Zampini rmapa[cp] = p->garray; 73214e84afc0SStefano Zampini cmapt[cp] = 2; 73224e84afc0SStefano Zampini cmapa[cp] = globidx; 73234e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73244e84afc0SStefano Zampini cp++; 73254e84afc0SStefano Zampini } 73264e84afc0SStefano Zampini break; 73274e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73289566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73294e84afc0SStefano Zampini /* P is product->B */ 73309566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73319566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73329566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73339566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73349566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73359566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73369566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73374e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73389566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73399566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73414e84afc0SStefano Zampini rmapt[cp] = 2; 73424e84afc0SStefano Zampini rmapa[cp] = globidx; 73434e84afc0SStefano Zampini cmapt[cp] = 2; 73444e84afc0SStefano Zampini cmapa[cp] = globidx; 73454e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73464e84afc0SStefano Zampini cp++; 73474e84afc0SStefano Zampini if (mmdata->P_oth) { 73489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73499566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 73509566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 73519566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73529566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73539566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73549566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73559566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73569566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73579566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73584e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73599566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73609566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73614e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73624e84afc0SStefano Zampini cp++; 73639566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73649566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73659566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73669566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73679566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73689566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73694e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73709566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73719566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73724e84afc0SStefano Zampini rmapt[cp] = 2; 73734e84afc0SStefano Zampini rmapa[cp] = globidx; 73744e84afc0SStefano Zampini cmapt[cp] = 2; 73754e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73764e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73774e84afc0SStefano Zampini cp++; 73784e84afc0SStefano Zampini } 73794e84afc0SStefano Zampini break; 7380d71ae5a4SJacob Faibussowitsch default: 7381d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73824e84afc0SStefano Zampini } 73834e84afc0SStefano Zampini /* sanity check */ 73849371c9d4SSatish Balay if (size > 1) 73859371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73864e84afc0SStefano Zampini 73879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7388ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7389ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7390ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7391ddea5d60SJunchao Zhang } 73924e84afc0SStefano Zampini mmdata->cp = cp; 73934e84afc0SStefano Zampini C->product->data = mmdata; 73944e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 73954e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 73964e84afc0SStefano Zampini 7397c215019aSStefano Zampini /* memory type */ 7398c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 73999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7400d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7402c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7403d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74043214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7405c215019aSStefano Zampini 74064e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7407ddea5d60SJunchao Zhang 7408ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7409ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7410ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7411ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7412ddea5d60SJunchao Zhang */ 74134e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74144e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74154e84afc0SStefano Zampini if (mptmp[cp]) continue; 7416ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74174e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74184e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74194e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74204e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74214e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74224e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74234e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74244e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7425ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7426ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74274e84afc0SStefano Zampini } 74284e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74294e84afc0SStefano Zampini } 7430ddea5d60SJunchao Zhang 7431ddea5d60SJunchao Zhang /* 7432ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7433ddea5d60SJunchao Zhang 7434ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7435ddea5d60SJunchao Zhang 7436d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7437ddea5d60SJunchao Zhang 7438ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7439ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7440ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7441ddea5d60SJunchao Zhang 7442ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7443da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7444ddea5d60SJunchao Zhang */ 74459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7447ddea5d60SJunchao Zhang 7448ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7449ddea5d60SJunchao Zhang if (hasoffproc) { 74504e84afc0SStefano Zampini PetscSF msf; 74514e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74524e84afc0SStefano Zampini 74539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7456ddea5d60SJunchao Zhang 74574e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74584e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74594e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74604e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7461ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74624e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74634e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74644e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74654e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74664e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74674e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74684e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74694e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74704e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74714e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74724e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74734e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74744e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7475ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74764e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74774e84afc0SStefano Zampini *coi++ = gr; 74784e84afc0SStefano Zampini *idxoff++ = j; 74794e84afc0SStefano Zampini } 74804e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74814e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74824e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74834e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74844e84afc0SStefano Zampini } else { /* offdiag */ 74854e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74864e84afc0SStefano Zampini } 74874e84afc0SStefano Zampini ncoo_o += nz; 7488ddea5d60SJunchao Zhang } else { /* this is a local row */ 74894e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74904e84afc0SStefano Zampini } 74914e84afc0SStefano Zampini } 74924e84afc0SStefano Zampini } 74934e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 74944e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 74954e84afc0SStefano Zampini } 74964e84afc0SStefano Zampini 74979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 74989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 74999566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75009566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75014e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75029566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75039566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75049566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75059566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75069566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75079566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7508ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75099566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75104e84afc0SStefano Zampini coo_i = coo_i2; 75114e84afc0SStefano Zampini coo_j = coo_j2; 75124e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75134e84afc0SStefano Zampini ncoo = ncoo_d; 75149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7515c215019aSStefano Zampini 75169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75189566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75194e84afc0SStefano Zampini } 7520c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75214e84afc0SStefano Zampini 7522ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75234e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75244e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75254e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75264e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75274e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75284e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75294e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75304e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75314e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75324e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75334e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75344e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75354e84afc0SStefano Zampini 75364e84afc0SStefano Zampini if (mptmp[cp]) continue; 7537ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7538ddea5d60SJunchao Zhang /* fill coo_i */ 75394e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75404e84afc0SStefano Zampini const PetscInt gr = i + rs; 75414e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75424e84afc0SStefano Zampini } 7543ddea5d60SJunchao Zhang /* fill coo_j */ 7544ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75459566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7546ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7547ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7548ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75494e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75504e84afc0SStefano Zampini } 75514e84afc0SStefano Zampini ncoo_d += mm->nz; 7552ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75534e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75544e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75554e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75564e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7557ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75584e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7559ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75604e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75614e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75624e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7563ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75644e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75654e84afc0SStefano Zampini } 75664e84afc0SStefano Zampini ncoo_d += nz; 75674e84afc0SStefano Zampini } 75684e84afc0SStefano Zampini } 75694e84afc0SStefano Zampini } 75704e84afc0SStefano Zampini } 757148a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 757348a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75749566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7575ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75769566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75774e84afc0SStefano Zampini 75784e84afc0SStefano Zampini /* preallocate with COO data */ 75799566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 75809566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 75813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75824e84afc0SStefano Zampini } 75834e84afc0SStefano Zampini 7584d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7585d71ae5a4SJacob Faibussowitsch { 75864e84afc0SStefano Zampini Mat_Product *product = mat->product; 75874e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 75884e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7589abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 75904e84afc0SStefano Zampini #else 75914e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 75924e84afc0SStefano Zampini #endif 75934e84afc0SStefano Zampini 75944e84afc0SStefano Zampini PetscFunctionBegin; 75954e84afc0SStefano Zampini MatCheckProduct(mat, 1); 75964e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 759748a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 759865e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7599abb89eb1SStefano Zampini switch (product->type) { 7600abb89eb1SStefano Zampini case MATPRODUCT_AB: 7601abb89eb1SStefano Zampini if (product->api_user) { 7602d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7604d0609cedSBarry Smith PetscOptionsEnd(); 7605abb89eb1SStefano Zampini } else { 7606d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76079566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7608d0609cedSBarry Smith PetscOptionsEnd(); 7609abb89eb1SStefano Zampini } 7610abb89eb1SStefano Zampini break; 7611abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7612abb89eb1SStefano Zampini if (product->api_user) { 7613d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76149566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7615d0609cedSBarry Smith PetscOptionsEnd(); 7616abb89eb1SStefano Zampini } else { 7617d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76189566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7619d0609cedSBarry Smith PetscOptionsEnd(); 7620abb89eb1SStefano Zampini } 7621abb89eb1SStefano Zampini break; 7622abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7623abb89eb1SStefano Zampini if (product->api_user) { 7624d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7626d0609cedSBarry Smith PetscOptionsEnd(); 7627abb89eb1SStefano Zampini } else { 7628d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76299566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7630d0609cedSBarry Smith PetscOptionsEnd(); 7631abb89eb1SStefano Zampini } 7632abb89eb1SStefano Zampini break; 7633d71ae5a4SJacob Faibussowitsch default: 7634d71ae5a4SJacob Faibussowitsch break; 7635abb89eb1SStefano Zampini } 7636abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7637abb89eb1SStefano Zampini } 76384e84afc0SStefano Zampini #endif 76394e84afc0SStefano Zampini if (match) { 76404e84afc0SStefano Zampini switch (product->type) { 76414e84afc0SStefano Zampini case MATPRODUCT_AB: 76424e84afc0SStefano Zampini case MATPRODUCT_AtB: 7643d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7644d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7645d71ae5a4SJacob Faibussowitsch break; 7646d71ae5a4SJacob Faibussowitsch default: 7647d71ae5a4SJacob Faibussowitsch break; 76484e84afc0SStefano Zampini } 76494e84afc0SStefano Zampini } 76504e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76519566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 765381824310SBarry Smith } 765498921bdaSJacob Faibussowitsch 765598921bdaSJacob Faibussowitsch /* 765672833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 765772833a62Smarkadams4 765872833a62Smarkadams4 n - the number of block indices in cc[] 765972833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 766072833a62Smarkadams4 */ 7661d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7662d71ae5a4SJacob Faibussowitsch { 766372833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 766472833a62Smarkadams4 const PetscInt *idx; 766572833a62Smarkadams4 766672833a62Smarkadams4 PetscFunctionBegin; 766772833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 766872833a62Smarkadams4 if (nidx) { 766972833a62Smarkadams4 cnt = 0; 767072833a62Smarkadams4 cc[cnt] = idx[0] / bs; 767172833a62Smarkadams4 for (j = 1; j < nidx; j++) { 767272833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 767372833a62Smarkadams4 } 767472833a62Smarkadams4 } 767572833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 767672833a62Smarkadams4 *n = cnt + 1; 76773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 767872833a62Smarkadams4 } 767972833a62Smarkadams4 768072833a62Smarkadams4 /* 768172833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 768272833a62Smarkadams4 768372833a62Smarkadams4 ncollapsed - the number of block indices 768472833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 768572833a62Smarkadams4 */ 7686d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7687d71ae5a4SJacob Faibussowitsch { 768872833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 768972833a62Smarkadams4 769072833a62Smarkadams4 PetscFunctionBegin; 769172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 769272833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 769372833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 769472833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 76959371c9d4SSatish Balay cprevtmp = cprev; 76969371c9d4SSatish Balay cprev = merged; 76979371c9d4SSatish Balay merged = cprevtmp; 769872833a62Smarkadams4 } 769972833a62Smarkadams4 *ncollapsed = nprev; 770072833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 770272833a62Smarkadams4 } 770372833a62Smarkadams4 77042d776b49SBarry Smith /* 770572833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 770672833a62Smarkadams4 770772833a62Smarkadams4 Input Parameter: 770872833a62Smarkadams4 . Amat - matrix 770972833a62Smarkadams4 - symmetrize - make the result symmetric 771072833a62Smarkadams4 + scale - scale with diagonal 771172833a62Smarkadams4 771272833a62Smarkadams4 Output Parameter: 771372833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 771472833a62Smarkadams4 771572833a62Smarkadams4 */ 7716e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7717d71ae5a4SJacob Faibussowitsch { 771872833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 771972833a62Smarkadams4 MPI_Comm comm; 772072833a62Smarkadams4 Mat Gmat; 772172833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 772272833a62Smarkadams4 Mat a, b, c; 772372833a62Smarkadams4 MatType jtype; 772472833a62Smarkadams4 772572833a62Smarkadams4 PetscFunctionBegin; 772672833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 772772833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 772872833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 772972833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 773072833a62Smarkadams4 nloc = (Iend - Istart) / bs; 773172833a62Smarkadams4 773272833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 773372833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 773472833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 773572833a62Smarkadams4 773672833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 773772833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 773872833a62Smarkadams4 implementation */ 773972833a62Smarkadams4 if (bs > 1) { 774072833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 774172833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 774272833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 774372833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 774472833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 774572833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 774672833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77472cf69117Smarkadams4 MatScalar *aa, val, *AA; 77482cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77499371c9d4SSatish Balay if (isseqaij) { 77509371c9d4SSatish Balay a = Amat; 77519371c9d4SSatish Balay b = NULL; 77529371c9d4SSatish Balay } else { 775372833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77549371c9d4SSatish Balay a = d->A; 77559371c9d4SSatish Balay b = d->B; 775672833a62Smarkadams4 } 775772833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 775872833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 775972833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77602cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 776159ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 776259ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 776359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 776459ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 776559ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 776672833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 776759ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 776859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 776959ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 777059ee9f9fSPierre Jolivet else { 777159ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 777259ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 777359ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 777472833a62Smarkadams4 } 777559ee9f9fSPierre Jolivet } 777659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 777759ee9f9fSPierre Jolivet } 777859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 777972833a62Smarkadams4 if (!ok) { 778072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 778159ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 778272833a62Smarkadams4 goto old_bs; 778372833a62Smarkadams4 } 778472833a62Smarkadams4 } 778572833a62Smarkadams4 } 778672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 778772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 778872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 77892cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 779072833a62Smarkadams4 // diag 779172833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 779272833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 779372833a62Smarkadams4 ai = aseq->i; 779472833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 779572833a62Smarkadams4 aj = aseq->j + ai[brow]; 779672833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 779772833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 779872833a62Smarkadams4 val = 0; 7799e02fb3cdSMark Adams if (index_size == 0) { 780072833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 780172833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 780272833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 780372833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 780472833a62Smarkadams4 } 780572833a62Smarkadams4 } 7806e02fb3cdSMark Adams } else { // use (index,index) value if provided 7807e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7808e02fb3cdSMark Adams int ii = index[iii]; 7809e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7810e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7811e02fb3cdSMark Adams int jj = index[jjj]; 7812e02fb3cdSMark Adams val = PetscAbs(PetscRealPart(aa[jj])); 7813e02fb3cdSMark Adams } 7814e02fb3cdSMark Adams } 7815e02fb3cdSMark Adams } 781659ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 781772833a62Smarkadams4 AA[k / bs] = val; 781872833a62Smarkadams4 } 781972833a62Smarkadams4 grow = Istart / bs + brow / bs; 782072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES)); 782172833a62Smarkadams4 } 782272833a62Smarkadams4 // off-diag 782372833a62Smarkadams4 if (ismpiaij) { 782472833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 782572833a62Smarkadams4 const PetscScalar *vals; 782672833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 782772833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 782872833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 782972833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 783072833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 783159ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 783272833a62Smarkadams4 AA[k / bs] = 0; 783372833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 783472833a62Smarkadams4 } 783572833a62Smarkadams4 nc = ncols / bs; 783672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7837e02fb3cdSMark Adams if (index_size == 0) { 783872833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 783972833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 784072833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 784172833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 784259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 784372833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 784472833a62Smarkadams4 } 784572833a62Smarkadams4 } 784672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 784772833a62Smarkadams4 } 7848e02fb3cdSMark Adams } else { // use (index,index) value if provided 7849e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7850e02fb3cdSMark Adams int ii = index[iii]; 7851e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7852e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7853e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7854e02fb3cdSMark Adams int jj = index[jjj]; 7855e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7856e02fb3cdSMark Adams } 7857e02fb3cdSMark Adams } 7858e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7859e02fb3cdSMark Adams } 7860e02fb3cdSMark Adams } 786172833a62Smarkadams4 grow = Istart / bs + brow / bs; 786272833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES)); 786372833a62Smarkadams4 } 786472833a62Smarkadams4 } 786572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 786672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 78672cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 786872833a62Smarkadams4 } else { 786972833a62Smarkadams4 const PetscScalar *vals; 787072833a62Smarkadams4 const PetscInt *idx; 787172833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 787272833a62Smarkadams4 old_bs: 787372833a62Smarkadams4 /* 787472833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 787572833a62Smarkadams4 */ 787672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 787772833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 787872833a62Smarkadams4 if (isseqaij) { 787972833a62Smarkadams4 PetscInt max_d_nnz; 788072833a62Smarkadams4 /* 788172833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 788272833a62Smarkadams4 */ 788372833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 788472833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 788572833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 788648a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 788772833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 788872833a62Smarkadams4 } else if (ismpiaij) { 788972833a62Smarkadams4 Mat Daij, Oaij; 789072833a62Smarkadams4 const PetscInt *garray; 789172833a62Smarkadams4 PetscInt max_d_nnz; 789272833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 789372833a62Smarkadams4 /* 789472833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 789572833a62Smarkadams4 */ 789672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 789772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 789872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 789948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 790072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 790172833a62Smarkadams4 /* 790272833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 790372833a62Smarkadams4 */ 790472833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 790572833a62Smarkadams4 o_nnz[jj] = 0; 790672833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 790772833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 790872833a62Smarkadams4 o_nnz[jj] += ncols; 790972833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 791072833a62Smarkadams4 } 791172833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 791272833a62Smarkadams4 } 791372833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 791472833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 791572833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 791672833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 791772833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 791872833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 791972833a62Smarkadams4 PetscInt dest_row = Ii / bs; 792072833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 792172833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 792272833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 792372833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 792472833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 792572833a62Smarkadams4 } 792672833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 792772833a62Smarkadams4 } 792872833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 792972833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 793072833a62Smarkadams4 } 793172833a62Smarkadams4 } else { 79322d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79332d776b49SBarry Smith else { 79342d776b49SBarry Smith Gmat = Amat; 79352d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79362d776b49SBarry Smith } 79379371c9d4SSatish Balay if (isseqaij) { 79389371c9d4SSatish Balay a = Gmat; 79399371c9d4SSatish Balay b = NULL; 79409371c9d4SSatish Balay } else { 794172833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79429371c9d4SSatish Balay a = d->A; 79439371c9d4SSatish Balay b = d->B; 794472833a62Smarkadams4 } 79452d776b49SBarry Smith if (filter >= 0 || scale) { 79462d776b49SBarry Smith /* take absolute value of each entry */ 794772833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 794872833a62Smarkadams4 MatInfo info; 794972833a62Smarkadams4 PetscScalar *avals; 795072833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 795172833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 795272833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 795372833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 795472833a62Smarkadams4 } 795572833a62Smarkadams4 } 79562d776b49SBarry Smith } 795772833a62Smarkadams4 if (symmetrize) { 7958b94d7dedSBarry Smith PetscBool isset, issym; 7959b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 7960b94d7dedSBarry Smith if (!isset || !issym) { 796172833a62Smarkadams4 Mat matTrans; 796272833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 79631fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 796472833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 796572833a62Smarkadams4 } 796672833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 79672d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 796872833a62Smarkadams4 if (scale) { 796972833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 797072833a62Smarkadams4 Vec diag; 797172833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 797272833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 797372833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 797472833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 797572833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 797672833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 797772833a62Smarkadams4 } 797872833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 79792d776b49SBarry Smith 79802d776b49SBarry Smith if (filter >= 0) { 79812ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 79822ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 79832d776b49SBarry Smith } 798472833a62Smarkadams4 *a_Gmat = Gmat; 79853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 798672833a62Smarkadams4 } 798772833a62Smarkadams4 798872833a62Smarkadams4 /* 798998921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 799098921bdaSJacob Faibussowitsch */ 799198921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h> 799298921bdaSJacob Faibussowitsch 799398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 79949566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 79959566063dSJacob Faibussowitsch #undef PetscCall 79969371c9d4SSatish Balay #define PetscCall(...) \ 79979371c9d4SSatish Balay do { \ 79985f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 799998921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 800098921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 800198921bdaSJacob Faibussowitsch return; \ 800298921bdaSJacob Faibussowitsch } \ 800398921bdaSJacob Faibussowitsch } while (0) 800498921bdaSJacob Faibussowitsch 800598921bdaSJacob Faibussowitsch #undef SETERRQ 80069371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80079371c9d4SSatish Balay do { \ 800898921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 800998921bdaSJacob Faibussowitsch return; \ 801098921bdaSJacob Faibussowitsch } while (0) 801198921bdaSJacob Faibussowitsch 801298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 801398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 801498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 801598921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 801698921bdaSJacob Faibussowitsch #else 801798921bdaSJacob Faibussowitsch #endif 8018d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8019d71ae5a4SJacob Faibussowitsch { 802098921bdaSJacob Faibussowitsch Mat mat = *mmat; 802198921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 802298921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 802398921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 802498921bdaSJacob Faibussowitsch PetscScalar value; 802598921bdaSJacob Faibussowitsch 802698921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 802798921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80285f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 802998921bdaSJacob Faibussowitsch { 803098921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 803198921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 803298921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 803398921bdaSJacob Faibussowitsch 803498921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 803598921bdaSJacob Faibussowitsch Mat A = aij->A; 803698921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 803798921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 803898921bdaSJacob Faibussowitsch MatScalar *aa; 803998921bdaSJacob Faibussowitsch PetscBool ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 804098921bdaSJacob Faibussowitsch Mat B = aij->B; 804198921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 804298921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 804398921bdaSJacob Faibussowitsch MatScalar *ba; 804498921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 804598921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 804698921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 804798921bdaSJacob Faibussowitsch 804898921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 804998921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 805098921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 805198921bdaSJacob Faibussowitsch 805298921bdaSJacob Faibussowitsch PetscFunctionBegin; 80539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 805598921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 805698921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 80576bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 805898921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 805998921bdaSJacob Faibussowitsch row = im[i] - rstart; 806098921bdaSJacob Faibussowitsch lastcol1 = -1; 806198921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 806298921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 806398921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 806498921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 806598921bdaSJacob Faibussowitsch low1 = 0; 806698921bdaSJacob Faibussowitsch high1 = nrow1; 806798921bdaSJacob Faibussowitsch lastcol2 = -1; 806898921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 806998921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 807098921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 807198921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 807298921bdaSJacob Faibussowitsch low2 = 0; 807398921bdaSJacob Faibussowitsch high2 = nrow2; 807498921bdaSJacob Faibussowitsch 807598921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 807698921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 807798921bdaSJacob Faibussowitsch else value = v[i + j * m]; 807898921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 807998921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 808098921bdaSJacob Faibussowitsch col = in[j] - cstart; 808198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 808298921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 808398921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 808463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 808598921bdaSJacob Faibussowitsch } else { 808698921bdaSJacob Faibussowitsch if (mat->was_assembled) { 808748a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 808898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8089eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 809098921bdaSJacob Faibussowitsch col--; 809198921bdaSJacob Faibussowitsch #else 809298921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 809398921bdaSJacob Faibussowitsch #endif 809498921bdaSJacob Faibussowitsch if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 80959566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 809698921bdaSJacob Faibussowitsch col = in[j]; 809798921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 809898921bdaSJacob Faibussowitsch B = aij->B; 809998921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81009371c9d4SSatish Balay bimax = b->imax; 81019371c9d4SSatish Balay bi = b->i; 81029371c9d4SSatish Balay bilen = b->ilen; 81039371c9d4SSatish Balay bj = b->j; 810498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 810598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 810698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 810798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 810898921bdaSJacob Faibussowitsch low2 = 0; 810998921bdaSJacob Faibussowitsch high2 = nrow2; 811098921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 811198921bdaSJacob Faibussowitsch ba = b->a; 811298921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 811398921bdaSJacob Faibussowitsch } 811498921bdaSJacob Faibussowitsch } else col = in[j]; 811598921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 811698921bdaSJacob Faibussowitsch } 811798921bdaSJacob Faibussowitsch } 811898921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 811998921bdaSJacob Faibussowitsch if (roworiented) { 81209566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 812198921bdaSJacob Faibussowitsch } else { 81229566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 812398921bdaSJacob Faibussowitsch } 812498921bdaSJacob Faibussowitsch } 812598921bdaSJacob Faibussowitsch } 81269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 812898921bdaSJacob Faibussowitsch } 812998921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 813098921bdaSJacob Faibussowitsch } 813172833a62Smarkadams4 813298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 813398921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 813498921bdaSJacob Faibussowitsch * original definitions */ 81359566063dSJacob Faibussowitsch #undef PetscCall 813698921bdaSJacob Faibussowitsch #undef SETERRQ 8137