1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 216462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2876497c311SBarry Smith PetscMPIInt in; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 3126497c311SBarry Smith PetscCall(PetscMPIIntCast(n, &in)); 313857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 314462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } else { 316462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3170716a85fSBarry Smith } 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 319857cbf51SRichard Tran Mills if (type == NORM_2) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 321857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 322a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3230716a85fSBarry Smith } 3243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250716a85fSBarry Smith } 3260716a85fSBarry Smith 327ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 328d71ae5a4SJacob Faibussowitsch { 329e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 330e52d2c62SBarry Smith IS sis, gis; 331e52d2c62SBarry Smith const PetscInt *isis, *igis; 332e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 333e52d2c62SBarry Smith 334e52d2c62SBarry Smith PetscFunctionBegin; 3359566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3369566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 341e52d2c62SBarry Smith 3429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 345e52d2c62SBarry Smith n = ngis + nsis; 3469566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3479566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 348e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 350e52d2c62SBarry Smith 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 356e52d2c62SBarry Smith } 357e52d2c62SBarry Smith 358dd6ea824SBarry Smith /* 3590f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3609e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3610f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3620f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36372fa4726SStefano Zampini has an order N integer array but is fast to access. 3649e25ed09SBarry Smith */ 365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 366d71ae5a4SJacob Faibussowitsch { 36744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 368d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 369dbb450caSBarry Smith 3703a40ed3dSBarry Smith PetscFunctionBegin; 37108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 372aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 373eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 374c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 375b1fc9764SSatish Balay #else 3769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 377905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 378b1fc9764SSatish Balay #endif 3793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3809e25ed09SBarry Smith } 3819e25ed09SBarry Smith 382d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 383a8f51744SPierre Jolivet do { \ 384db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 385db4deed7SKarl Rupp else high1 = nrow1; \ 386fd3458f5SBarry Smith lastcol1 = col; \ 387fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 388fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 389fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 390fd3458f5SBarry Smith else low1 = t; \ 391ba4e3ef2SSatish Balay } \ 392fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 393fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 394fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3950c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3960c0d7e18SFande Kong ap1[_i] += value; \ 3970c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3980c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3999371c9d4SSatish Balay } else ap1[_i] = value; \ 40030770e4dSSatish Balay goto a_noinsert; \ 4010520107fSSatish Balay } \ 4020520107fSSatish Balay } \ 4039371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4049371c9d4SSatish Balay low1 = 0; \ 4059371c9d4SSatish Balay high1 = nrow1; \ 4069371c9d4SSatish Balay goto a_noinsert; \ 4079371c9d4SSatish Balay } \ 4089371c9d4SSatish Balay if (nonew == 1) { \ 4099371c9d4SSatish Balay low1 = 0; \ 4109371c9d4SSatish Balay high1 = nrow1; \ 4119371c9d4SSatish Balay goto a_noinsert; \ 4129371c9d4SSatish Balay } \ 41308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 414fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4159371c9d4SSatish Balay N = nrow1++ - 1; \ 4169371c9d4SSatish Balay a->nz++; \ 4179371c9d4SSatish Balay high1++; \ 4180520107fSSatish Balay /* shift up all the later entries in this row */ \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4209566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 421fd3458f5SBarry Smith rp1[_i] = col; \ 422fd3458f5SBarry Smith ap1[_i] = value; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 46730770e4dSSatish Balay b_noinsert:; \ 468fd3458f5SBarry Smith bilen[row] = nrow2; \ 469a8f51744SPierre Jolivet } while (0) 47030770e4dSSatish Balay 471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 472d71ae5a4SJacob Faibussowitsch { 4732fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4742fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4752fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 476fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4772fd7e33dSBarry Smith 4782fd7e33dSBarry Smith PetscFunctionBegin; 4792fd7e33dSBarry Smith /* code only works for square matrices A */ 4802fd7e33dSBarry Smith 4812fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4832fd7e33dSBarry Smith row = row - diag; 4842fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4852fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4862fd7e33dSBarry Smith } 487fff043a9SJunchao Zhang if (l) { 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 491fff043a9SJunchao Zhang } 4922fd7e33dSBarry Smith 4932fd7e33dSBarry Smith /* diagonal part */ 494fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 49657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 4979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 498fff043a9SJunchao Zhang } 4992fd7e33dSBarry Smith 5002fd7e33dSBarry Smith /* right of diagonal part */ 501fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 505fff043a9SJunchao Zhang } 5063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5072fd7e33dSBarry Smith } 5082fd7e33dSBarry Smith 509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 510d71ae5a4SJacob Faibussowitsch { 51144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 512071fcb05SBarry Smith PetscScalar value = 0.0; 513d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 514d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 515ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5168a729477SBarry Smith 5170520107fSSatish Balay /* Some Variables required in the macro */ 5184ee7247eSSatish Balay Mat A = aij->A; 5194ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 521ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52230770e4dSSatish Balay Mat B = aij->B; 52330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 524d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 525ce496241SStefano Zampini MatScalar *aa, *ba; 526fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5278d76821aSHong Zhang PetscInt nonew; 528a77337e4SBarry Smith MatScalar *ap1, *ap2; 5294ee7247eSSatish Balay 5303a40ed3dSBarry Smith PetscFunctionBegin; 5319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5338a729477SBarry Smith for (i = 0; i < m; i++) { 5345ef9f2a5SBarry Smith if (im[i] < 0) continue; 53508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5364b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5374b0e389bSBarry Smith row = im[i] - rstart; 538fd3458f5SBarry Smith lastcol1 = -1; 5398e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5408e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 541fd3458f5SBarry Smith rmax1 = aimax[row]; 542fd3458f5SBarry Smith nrow1 = ailen[row]; 543fd3458f5SBarry Smith low1 = 0; 544fd3458f5SBarry Smith high1 = nrow1; 545fd3458f5SBarry Smith lastcol2 = -1; 5468e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5478e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 548fd3458f5SBarry Smith rmax2 = bimax[row]; 549d498b1e9SBarry Smith nrow2 = bilen[row]; 550fd3458f5SBarry Smith low2 = 0; 551fd3458f5SBarry Smith high2 = nrow2; 552fd3458f5SBarry Smith 5531eb62cbbSBarry Smith for (j = 0; j < n; j++) { 554071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 555c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 556fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 557fd3458f5SBarry Smith col = in[j] - cstart; 5588d76821aSHong Zhang nonew = a->nonew; 559d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 560f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 561f7d195e4SLawrence Mitchell continue; 562f7d195e4SLawrence Mitchell } else { 563f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 564227d817aSBarry Smith if (mat->was_assembled) { 56548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 567eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 568fa46199cSSatish Balay col--; 569b1fc9764SSatish Balay #else 570905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 571b1fc9764SSatish Balay #endif 572f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 573eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5744b0e389bSBarry Smith col = in[j]; 5759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 576f9508a3cSSatish Balay B = aij->B; 577f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5789371c9d4SSatish Balay bimax = b->imax; 5799371c9d4SSatish Balay bi = b->i; 5809371c9d4SSatish Balay bilen = b->ilen; 5819371c9d4SSatish Balay bj = b->j; 5829371c9d4SSatish Balay ba = b->a; 583cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 584cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 585d498b1e9SBarry Smith rmax2 = bimax[row]; 586d498b1e9SBarry Smith nrow2 = bilen[row]; 587d498b1e9SBarry Smith low2 = 0; 588d498b1e9SBarry Smith high2 = nrow2; 589d0f46423SBarry Smith bm = aij->B->rmap->n; 590f9508a3cSSatish Balay ba = b->a; 591d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 592f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5950587a0fcSBarry Smith } 596c48de900SBarry Smith } else col = in[j]; 5978d76821aSHong Zhang nonew = b->nonew; 598d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5991eb62cbbSBarry Smith } 6001eb62cbbSBarry Smith } 6015ef9f2a5SBarry Smith } else { 60228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60390f02eecSBarry Smith if (!aij->donotstash) { 6045080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 605d36fbae8SSatish Balay if (roworiented) { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 607d36fbae8SSatish Balay } else { 6088e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6094b0e389bSBarry Smith } 6101eb62cbbSBarry Smith } 6118a729477SBarry Smith } 61290f02eecSBarry Smith } 6135519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6168a729477SBarry Smith } 6178a729477SBarry Smith 6182b08fdbeSandi selinger /* 619904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6202b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 621904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6222b08fdbeSandi selinger */ 623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 624d71ae5a4SJacob Faibussowitsch { 625904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 626904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6274cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 628904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 629904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 630904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 631904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 632904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6336dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 634904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 635904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 636904d1e70Sandi selinger 637904d1e70Sandi selinger PetscFunctionBegin; 638904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 639904d1e70Sandi selinger for (j = 0; j < am; j++) { 640904d1e70Sandi selinger dnz = onz = 0; 641904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6426dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 643904d1e70Sandi selinger /* If column is in the diagonal */ 644904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 645904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 646904d1e70Sandi selinger dnz++; 647904d1e70Sandi selinger } else { /* off-diagonal entries */ 648904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 649904d1e70Sandi selinger onz++; 650904d1e70Sandi selinger } 651904d1e70Sandi selinger } 652904d1e70Sandi selinger ailen[j] = dnz; 653904d1e70Sandi selinger bilen[j] = onz; 654904d1e70Sandi selinger } 6553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 656904d1e70Sandi selinger } 657904d1e70Sandi selinger 658904d1e70Sandi selinger /* 659904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 660904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6611de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6621de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6631de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 664904d1e70Sandi selinger */ 665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 666d71ae5a4SJacob Faibussowitsch { 6673a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6683a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6694cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 670f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6713a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6723a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6733a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6743a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6753a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6766dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6771de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 678904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 679904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6803a063d27Sandi selinger 6813a063d27Sandi selinger PetscFunctionBegin; 6823a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6833a063d27Sandi selinger for (j = 0; j < am; j++) { 684904d1e70Sandi selinger dnz_row = onz_row = 0; 685904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 686904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 687e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 688e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 689ae8e66a0Sandi selinger /* If column is in the diagonal */ 6903a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 691904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 692904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 693904d1e70Sandi selinger dnz_row++; 694ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 695904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 696904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 697904d1e70Sandi selinger onz_row++; 6983a063d27Sandi selinger } 6993a063d27Sandi selinger } 700904d1e70Sandi selinger ailen[j] = dnz_row; 701904d1e70Sandi selinger bilen[j] = onz_row; 7023a063d27Sandi selinger } 7033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7043a063d27Sandi selinger } 7053a063d27Sandi selinger 706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 707d71ae5a4SJacob Faibussowitsch { 708b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 709d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 710d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 711b49de8d1SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 713b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 717b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 718b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 721b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 722b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7239566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 724fa852ad4SSatish Balay } else { 72548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 727eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 728fa46199cSSatish Balay col--; 729b1fc9764SSatish Balay #else 730905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 731b1fc9764SSatish Balay #endif 732e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 734b49de8d1SLois Curfman McInnes } 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 7373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 738b49de8d1SLois Curfman McInnes } 739bc5ccf88SSatish Balay 740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 741d71ae5a4SJacob Faibussowitsch { 742bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 743b1d57f15SBarry Smith PetscInt nstash, reallocs; 744bc5ccf88SSatish Balay 745bc5ccf88SSatish Balay PetscFunctionBegin; 7463ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 747bc5ccf88SSatish Balay 7489566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7499566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7509566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 752bc5ccf88SSatish Balay } 753bc5ccf88SSatish Balay 754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 755d71ae5a4SJacob Faibussowitsch { 756bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 757b1d57f15SBarry Smith PetscMPIInt n; 758b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 759e44c0bd4SBarry Smith PetscInt *row, *col; 760ace3abfcSBarry Smith PetscBool other_disassembled; 76187828ca2SBarry Smith PetscScalar *val; 762bc5ccf88SSatish Balay 76391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7646e111a19SKarl Rupp 765bc5ccf88SSatish Balay PetscFunctionBegin; 7664cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 767a2d1c673SSatish Balay while (1) { 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 769a2d1c673SSatish Balay if (!flg) break; 770a2d1c673SSatish Balay 771bc5ccf88SSatish Balay for (i = 0; i < n;) { 772bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7732205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7742205254eSKarl Rupp if (row[j] != rstart) break; 7752205254eSKarl Rupp } 776bc5ccf88SSatish Balay if (j < n) ncols = j - i; 777bc5ccf88SSatish Balay else ncols = n - i; 778bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 780bc5ccf88SSatish Balay i = j; 781bc5ccf88SSatish Balay } 782bc5ccf88SSatish Balay } 7839566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 784bc5ccf88SSatish Balay } 7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 786c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7879ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7889ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7919ecce9b1SRichard Tran Mills } 792e2cf4d64SStefano Zampini #endif 7939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 795bc5ccf88SSatish Balay 796bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 797071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 798bc5ccf88SSatish Balay /* 799bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 800bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 801bc5ccf88SSatish Balay */ 802bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 803462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 805eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 806ad59fb31SSatish Balay } 807ad59fb31SSatish Balay } 80848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8099566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 811c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 815bc5ccf88SSatish Balay 8169566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8172205254eSKarl Rupp 818f4259b30SLisandro Dalcin aij->rowvalues = NULL; 819a30b2313SHong Zhang 8209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 821e56f5c9eSBarry Smith 8224f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 823f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 824e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 825462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 826e56f5c9eSBarry Smith } 8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 828c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 829e2cf4d64SStefano Zampini #endif 8303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 831bc5ccf88SSatish Balay } 832bc5ccf88SSatish Balay 833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 834d71ae5a4SJacob Faibussowitsch { 83544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8363a40ed3dSBarry Smith 8373a40ed3dSBarry Smith PetscFunctionBegin; 8389566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8411eb62cbbSBarry Smith } 8421eb62cbbSBarry Smith 843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 844d71ae5a4SJacob Faibussowitsch { 8451b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8461b1dd7adSMatthew G. Knepley PetscInt *lrows; 8476e520ac8SStefano Zampini PetscInt r, len; 8489939a2d1SBarry Smith PetscBool cong; 8491eb62cbbSBarry Smith 8503a40ed3dSBarry Smith PetscFunctionBegin; 8516e520ac8SStefano Zampini /* get locally owned rows */ 8529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8539566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 854dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85597b48c8fSBarry Smith if (x && b) { 8561b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8571b1dd7adSMatthew G. Knepley PetscScalar *bb; 8581b1dd7adSMatthew G. Knepley 85928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8619566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8621b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86597b48c8fSBarry Smith } 866a92ad425SStefano Zampini 867a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8689566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8699566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 870a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 871a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 872a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 873a92ad425SStefano Zampini PetscInt nnwA, nnwB; 874a92ad425SStefano Zampini PetscBool nnzA, nnzB; 875a92ad425SStefano Zampini 876a92ad425SStefano Zampini nnwA = aijA->nonew; 877a92ad425SStefano Zampini nnwB = aijB->nonew; 878a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 879a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 880a92ad425SStefano Zampini if (!nnzA) { 8819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 882a92ad425SStefano Zampini aijA->nonew = 0; 883a92ad425SStefano Zampini } 884a92ad425SStefano Zampini if (!nnzB) { 8859566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 886a92ad425SStefano Zampini aijB->nonew = 0; 887a92ad425SStefano Zampini } 888a92ad425SStefano Zampini /* Must zero here before the next loop */ 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8909566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8911b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8921b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 893a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8949566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 895e2d53e46SBarry Smith } 896a92ad425SStefano Zampini aijA->nonew = nnwA; 897a92ad425SStefano Zampini aijB->nonew = nnwB; 8986eb55b6aSBarry Smith } else { 8999566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9009566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9016eb55b6aSBarry Smith } 9029566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9054f9cfa9eSBarry Smith 9069939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 907f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9089939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 909462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9109939a2d1SBarry Smith } 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9121eb62cbbSBarry Smith } 9131eb62cbbSBarry Smith 914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 915d71ae5a4SJacob Faibussowitsch { 9169c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9176497c311SBarry Smith PetscInt n = A->rmap->n; 918131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 920131c27b5Sprj- PetscMPIInt p = 0; 92154bd4135SMatthew G. Knepley PetscSFNode *rrows; 92254bd4135SMatthew G. Knepley PetscSF sf; 9239c7c4993SBarry Smith const PetscScalar *xx; 924fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 925564f14d6SBarry Smith Vec xmask, lmask; 926564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 927564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 928564f14d6SBarry Smith PetscScalar *aa; 9299c7c4993SBarry Smith 9309c7c4993SBarry Smith PetscFunctionBegin; 93154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 937aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9385ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9399566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9405ba17502SJed Brown } 94154bd4135SMatthew G. Knepley rrows[r].rank = p; 94254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9439c7c4993SBarry Smith } 9449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9479566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9489566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9519371c9d4SSatish Balay for (r = 0; r < n; ++r) 9529371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 953564f14d6SBarry Smith /* zero diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9554cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9569566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9589566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 964a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 965a92ad425SStefano Zampini PetscBool cong; 966a92ad425SStefano Zampini 9679566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 973377aa5a1SBarry Smith } 9749566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9754cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 977564f14d6SBarry Smith ii = aij->i; 9788e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 979564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 980564f14d6SBarry Smith if (aij->compressedrow.use) { 981564f14d6SBarry Smith m = aij->compressedrow.nrows; 982564f14d6SBarry Smith ii = aij->compressedrow.i; 983564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 984564f14d6SBarry Smith for (i = 0; i < m; i++) { 985564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 986564f14d6SBarry Smith aj = aij->j + ii[i]; 987fff043a9SJunchao Zhang aa = aij_a + ii[i]; 988564f14d6SBarry Smith 989564f14d6SBarry Smith for (j = 0; j < n; j++) { 99025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 991377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 992564f14d6SBarry Smith *aa = 0.0; 993564f14d6SBarry Smith } 994564f14d6SBarry Smith aa++; 995564f14d6SBarry Smith aj++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith ridx++; 998564f14d6SBarry Smith } 999564f14d6SBarry Smith } else { /* do not use compressed row format */ 1000564f14d6SBarry Smith m = l->B->rmap->n; 1001564f14d6SBarry Smith for (i = 0; i < m; i++) { 1002564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1003564f14d6SBarry Smith aj = aij->j + ii[i]; 1004fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1005564f14d6SBarry Smith for (j = 0; j < n; j++) { 100625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1007377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1008564f14d6SBarry Smith *aa = 0.0; 1009564f14d6SBarry Smith } 1010564f14d6SBarry Smith aa++; 1011564f14d6SBarry Smith aj++; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith } 1015a92ad425SStefano Zampini if (x && b) { 10169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1018377aa5a1SBarry Smith } 10199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10234f9cfa9eSBarry Smith 10244f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1025f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10264f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1027462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10284f9cfa9eSBarry Smith } 10293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10309c7c4993SBarry Smith } 10319c7c4993SBarry Smith 1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1033d71ae5a4SJacob Faibussowitsch { 1034416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1035b1d57f15SBarry Smith PetscInt nt; 103619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1037416022c9SBarry Smith 10383a40ed3dSBarry Smith PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1044296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10461eb62cbbSBarry Smith } 10471eb62cbbSBarry Smith 1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1049d71ae5a4SJacob Faibussowitsch { 1050bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1051bd0c2dcbSBarry Smith 1052bd0c2dcbSBarry Smith PetscFunctionBegin; 10539566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1055bd0c2dcbSBarry Smith } 1056bd0c2dcbSBarry Smith 1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1058d71ae5a4SJacob Faibussowitsch { 1059416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10613a40ed3dSBarry Smith 10623a40ed3dSBarry Smith PetscFunctionBegin; 10639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10669566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1068da3a660dSBarry Smith } 1069da3a660dSBarry Smith 1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1071d71ae5a4SJacob Faibussowitsch { 1072416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1073da3a660dSBarry Smith 10743a40ed3dSBarry Smith PetscFunctionBegin; 1075da3a660dSBarry Smith /* do nondiagonal part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1077da3a660dSBarry Smith /* do local part */ 10789566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10799613dc34SJunchao Zhang /* add partial results together */ 10809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1083da3a660dSBarry Smith } 1084da3a660dSBarry Smith 1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1086d71ae5a4SJacob Faibussowitsch { 10874f423910Svictorle MPI_Comm comm; 1088ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1089ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1090cd0d46ebSvictorle IS Me, Notme; 1091b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109254d735aeSStefano Zampini PetscBool lf; 1093b1d57f15SBarry Smith PetscMPIInt size; 1094cd0d46ebSvictorle 1095cd0d46ebSvictorle PetscFunctionBegin; 109642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10979566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1098462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10993ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11023ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110342e5f5b4Svictorle 11047dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11059566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1108cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1109cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11119566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111366501d38Svictorle Aoff = Aoffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111566501d38Svictorle Boff = Boffs[0]; 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11179566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11189566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11219566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1123cd0d46ebSvictorle } 1124cd0d46ebSvictorle 1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1126d71ae5a4SJacob Faibussowitsch { 1127416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1128da3a660dSBarry Smith 11293a40ed3dSBarry Smith PetscFunctionBegin; 1130da3a660dSBarry Smith /* do nondiagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1132da3a660dSBarry Smith /* do local part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11349613dc34SJunchao Zhang /* add partial results together */ 11359566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11369566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1138da3a660dSBarry Smith } 1139da3a660dSBarry Smith 11401eb62cbbSBarry Smith /* 11411eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11421eb62cbbSBarry Smith diagonal block 11431eb62cbbSBarry Smith */ 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11473a40ed3dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 114908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1150aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11519566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11531eb62cbbSBarry Smith } 11541eb62cbbSBarry Smith 1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1156d71ae5a4SJacob Faibussowitsch { 1157052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11583a40ed3dSBarry Smith 11593a40ed3dSBarry Smith PetscFunctionBegin; 11609566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11619566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1163052efed2SBarry Smith } 1164052efed2SBarry Smith 1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1166d71ae5a4SJacob Faibussowitsch { 11678e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11688e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11698e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11703ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11712e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117317a3732bSBarry Smith PetscInt64 nz, hnz; 11743ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11753ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11763ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117717a3732bSBarry Smith PetscMPIInt rank; 11788e2fed03SBarry Smith 11798e2fed03SBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11813ea6fe3dSLisandro Dalcin 11823ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11833ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11843ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11853ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11863ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11878e2fed03SBarry Smith nz = A->nz + B->nz; 11883ea6fe3dSLisandro Dalcin 11893ea6fe3dSLisandro Dalcin /* write matrix header */ 11900700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11919371c9d4SSatish Balay header[1] = M; 11929371c9d4SSatish Balay header[2] = N; 119317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119538b83642SBarry Smith if (rank == 0) { 11961690c2aeSBarry Smith if (hnz > PETSC_INT_MAX) header[3] = PETSC_INT_MAX; 119738b83642SBarry Smith else header[3] = (PetscInt)hnz; 119838b83642SBarry Smith } 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12008e2fed03SBarry Smith 12013ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12033ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12068e2fed03SBarry Smith 12073ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12093ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12103ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12113ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12123ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12138e2fed03SBarry Smith } 12149371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12159371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12168e2fed03SBarry Smith } 121717a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12199566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12208e2fed03SBarry Smith 12213ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12282e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12328e2fed03SBarry Smith } 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12379566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12388e2fed03SBarry Smith 12393ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12409566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12428e2fed03SBarry Smith } 12438e2fed03SBarry Smith 12449804daf3SBarry Smith #include <petscdraw.h> 1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1246d71ae5a4SJacob Faibussowitsch { 124744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124832dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1249ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1250b0a32e0cSBarry Smith PetscViewer sviewer; 1251f3ef73ceSBarry Smith PetscViewerFormat format; 1252416022c9SBarry Smith 12533a40ed3dSBarry Smith PetscFunctionBegin; 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125732077d6dSBarry Smith if (iascii) { 12589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1259ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12601690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1263ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1264ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1265ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1266ef5fdb51SBarry Smith navg += nz[i]; 1267ef5fdb51SBarry Smith } 12689566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1269ef5fdb51SBarry Smith navg = navg / size; 12709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1272ef5fdb51SBarry Smith } 12739566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1274456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12754e220ebcSLois Curfman McInnes MatInfo info; 12766335e310SSatish Balay PetscInt *inodes = NULL; 1277923f20ffSKris Buschelman 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12809566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1282923f20ffSKris Buschelman if (!inodes) { 12839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12849371c9d4SSatish Balay (double)info.memory)); 12856831982aSBarry Smith } else { 12869371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12879371c9d4SSatish Balay (double)info.memory)); 12886831982aSBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12969566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1298fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1299923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13009566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1301923f20ffSKris Buschelman if (inodes) { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1303d38fa0fbSBarry Smith } else { 13049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1305d38fa0fbSBarry Smith } 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13074aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130908480c60SBarry Smith } 13108e2fed03SBarry Smith } else if (isbinary) { 13118e2fed03SBarry Smith if (size == 1) { 13129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13139566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13148e2fed03SBarry Smith } else { 13159566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13168e2fed03SBarry Smith } 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131871e56450SStefano Zampini } else if (iascii && size == 1) { 13199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13209566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13220f5bd95cSBarry Smith } else if (isdraw) { 1323b0a32e0cSBarry Smith PetscDraw draw; 1324ace3abfcSBarry Smith PetscBool isnull; 13259566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13269566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13273ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132819bcc07fSBarry Smith } 132919bcc07fSBarry Smith 133071e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 133171e56450SStefano Zampini Mat A = NULL, Av; 133271e56450SStefano Zampini IS isrow, iscol; 13332ee70a88SLois Curfman McInnes 13349566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13359566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13379566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133871e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133971e56450SStefano Zampini /* 134071e56450SStefano Zampini Mat *AA, A = NULL, Av; 134171e56450SStefano Zampini IS isrow,iscol; 134271e56450SStefano Zampini 13439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1346dd400576SPatrick Sanan if (rank == 0) { 13479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134871e56450SStefano Zampini A = AA[0]; 134971e56450SStefano Zampini Av = AA[0]; 135095373324SBarry Smith } 13519566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135271e56450SStefano Zampini */ 13539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135555843e3eSBarry Smith /* 135655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1357b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135855843e3eSBarry Smith */ 13599566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1360dd400576SPatrick Sanan if (rank == 0) { 136148a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13629566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136395373324SBarry Smith } 13649566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136695373324SBarry Smith } 13673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13681eb62cbbSBarry Smith } 13691eb62cbbSBarry Smith 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1371d71ae5a4SJacob Faibussowitsch { 1372ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1373416022c9SBarry Smith 13743a40ed3dSBarry Smith PetscFunctionBegin; 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137948a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1381416022c9SBarry Smith } 1382416022c9SBarry Smith 1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1384d71ae5a4SJacob Faibussowitsch { 138544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1386f4259b30SLisandro Dalcin Vec bb1 = NULL; 1387ace3abfcSBarry Smith PetscBool hasop; 13888a729477SBarry Smith 13893a40ed3dSBarry Smith PetscFunctionBegin; 1390a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393a2b30743SBarry Smith } 1394a2b30743SBarry Smith 139548a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13964e980039SJed Brown 1397c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1398da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14002798e883SHong Zhang its--; 1401da3a660dSBarry Smith } 14022798e883SHong Zhang 14032798e883SHong Zhang while (its--) { 14049566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14062798e883SHong Zhang 1407c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14089566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14099566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14102798e883SHong Zhang 1411c14dc6b6SHong Zhang /* local sweep */ 14129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14132798e883SHong Zhang } 14143a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1426c14dc6b6SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14422798e883SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 1446a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1447a7420bb7SBarry Smith Vec xx1; 1448a7420bb7SBarry Smith 14499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1451a7420bb7SBarry Smith 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1454a7420bb7SBarry Smith if (!mat->diag) { 14559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14569566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1457a7420bb7SBarry Smith } 14589566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1459bd0c2dcbSBarry Smith if (hasop) { 14609566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1461bd0c2dcbSBarry Smith } else { 14629566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1463bd0c2dcbSBarry Smith } 14649566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1465887ee2caSBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1467a7420bb7SBarry Smith 1468a7420bb7SBarry Smith /* local sweep */ 14699566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14709566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1472ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1473c14dc6b6SHong Zhang 14749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1475a0808db4SHong Zhang 14767b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14788a729477SBarry Smith } 1479a66be287SLois Curfman McInnes 1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1481d71ae5a4SJacob Faibussowitsch { 148272e6a0cfSJed Brown Mat aA, aB, Aperm; 148372e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148472e6a0cfSJed Brown PetscScalar *aa, *ba; 148572e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148672e6a0cfSJed Brown PetscSF rowsf, sf; 14870298fd71SBarry Smith IS parcolp = NULL; 148872e6a0cfSJed Brown PetscBool done; 148942e855d1Svictor 149042e855d1Svictor PetscFunctionBegin; 14919566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149572e6a0cfSJed Brown 149672e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14999566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 150072e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15029566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150372e6a0cfSJed Brown 150472e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150872e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15119566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151272e6a0cfSJed Brown 15139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151672e6a0cfSJed Brown 151772e6a0cfSJed Brown /* Find out where my gcols should go */ 15189566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15259566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152672e6a0cfSJed Brown 15279566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15289566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15299566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 153072e6a0cfSJed Brown for (i = 0; i < m; i++) { 1531131c27b5Sprj- PetscInt row = rdest[i]; 1532131c27b5Sprj- PetscMPIInt rowner; 15339566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153472e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1535131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1536131c27b5Sprj- PetscMPIInt cowner; 15379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153872e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153972e6a0cfSJed Brown else onnz[i]++; 154072e6a0cfSJed Brown } 154172e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1542131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1543131c27b5Sprj- PetscMPIInt cowner; 15449566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154672e6a0cfSJed Brown else onnz[i]++; 154772e6a0cfSJed Brown } 154872e6a0cfSJed Brown } 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155472e6a0cfSJed Brown 15559566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155872e6a0cfSJed Brown for (i = 0; i < m; i++) { 155972e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1560970468b0SJed Brown PetscInt j0, rowlen; 156172e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1562970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1563970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15649566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1565970468b0SJed Brown } 156672e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1567970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1568970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15699566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1570970468b0SJed Brown } 157172e6a0cfSJed Brown } 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15749566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15759566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15799566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15809566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15819566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158272e6a0cfSJed Brown *B = Aperm; 15833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158442e855d1Svictor } 158542e855d1Svictor 1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1587d71ae5a4SJacob Faibussowitsch { 1588c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1589c5e4d11fSDmitry Karpeev 1590c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15919566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1592c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1594c5e4d11fSDmitry Karpeev } 1595c5e4d11fSDmitry Karpeev 1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1597d71ae5a4SJacob Faibussowitsch { 1598a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1599a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16003966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1601a66be287SLois Curfman McInnes 16023a40ed3dSBarry Smith PetscFunctionBegin; 16034e220ebcSLois Curfman McInnes info->block_size = 1.0; 16049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16052205254eSKarl Rupp 16069371c9d4SSatish Balay isend[0] = info->nz_used; 16079371c9d4SSatish Balay isend[1] = info->nz_allocated; 16089371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16099371c9d4SSatish Balay isend[3] = info->memory; 16109371c9d4SSatish Balay isend[4] = info->mallocs; 16112205254eSKarl Rupp 16129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16132205254eSKarl Rupp 16149371c9d4SSatish Balay isend[0] += info->nz_used; 16159371c9d4SSatish Balay isend[1] += info->nz_allocated; 16169371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16179371c9d4SSatish Balay isend[3] += info->memory; 16189371c9d4SSatish Balay isend[4] += info->mallocs; 1619a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16204e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16214e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16224e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16234e220ebcSLois Curfman McInnes info->memory = isend[3]; 16244e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1625a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1626462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16272205254eSKarl Rupp 16284e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16294e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16304e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16314e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16324e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1633a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1634462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16352205254eSKarl Rupp 16364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1641a66be287SLois Curfman McInnes } 16424e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16434e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16444e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1646a66be287SLois Curfman McInnes } 1647a66be287SLois Curfman McInnes 1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1649d71ae5a4SJacob Faibussowitsch { 1650c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1651c74985f6SBarry Smith 16523a40ed3dSBarry Smith PetscFunctionBegin; 165312c028f9SKris Buschelman switch (op) { 1654512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1657a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16590ad02fcaSStefano Zampini case MAT_USE_INODES: 166012c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16611a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1662fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16639566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166512c028f9SKris Buschelman break; 166612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166743674050SBarry Smith MatCheckPreallocated(A, 1); 16684e0d8c25SBarry Smith a->roworiented = flg; 16692205254eSKarl Rupp 16709566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167212c028f9SKris Buschelman break; 16738c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1674d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1675d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1676d71ae5a4SJacob Faibussowitsch break; 1677d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1678d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1679d71ae5a4SJacob Faibussowitsch break; 1680c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1681ffa07934SHong Zhang case MAT_SPD: 168277e54ba9SKris Buschelman case MAT_SYMMETRIC: 168377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1684bf108f30SBarry Smith case MAT_HERMITIAN: 1685bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1686b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1687b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1688b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 1689*9725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 169077e54ba9SKris Buschelman break; 1691d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1692d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1693d71ae5a4SJacob Faibussowitsch break; 1694957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1695957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1696957cac9fSHong Zhang break; 1697d71ae5a4SJacob Faibussowitsch default: 1698d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16993a40ed3dSBarry Smith } 17003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1701c74985f6SBarry Smith } 1702c74985f6SBarry Smith 1703d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1704d71ae5a4SJacob Faibussowitsch { 1705154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1707d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1708d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1709b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171039e00950SLois Curfman McInnes 17113a40ed3dSBarry Smith PetscFunctionBegin; 171228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17137a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17147a0afa10SBarry Smith 171570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17167a0afa10SBarry Smith /* 17177a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17187a0afa10SBarry Smith */ 17197a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1720b1d57f15SBarry Smith PetscInt max = 1, tmp; 1721d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17227a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17232205254eSKarl Rupp if (max < tmp) max = tmp; 17247a0afa10SBarry Smith } 17259566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17267a0afa10SBarry Smith } 17277a0afa10SBarry Smith 1728aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1729abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173039e00950SLois Curfman McInnes 17319371c9d4SSatish Balay pvA = &vworkA; 17329371c9d4SSatish Balay pcA = &cworkA; 17339371c9d4SSatish Balay pvB = &vworkB; 17349371c9d4SSatish Balay pcB = &cworkB; 17359371c9d4SSatish Balay if (!v) { 17369371c9d4SSatish Balay pvA = NULL; 17379371c9d4SSatish Balay pvB = NULL; 17389371c9d4SSatish Balay } 17399371c9d4SSatish Balay if (!idx) { 17409371c9d4SSatish Balay pcA = NULL; 17419371c9d4SSatish Balay if (!v) pcB = NULL; 17429371c9d4SSatish Balay } 17439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17449566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1745154123eaSLois Curfman McInnes nztot = nzA + nzB; 1746154123eaSLois Curfman McInnes 174770f0671dSBarry Smith cmap = mat->garray; 1748154123eaSLois Curfman McInnes if (v || idx) { 1749154123eaSLois Curfman McInnes if (nztot) { 1750154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1751b1d57f15SBarry Smith PetscInt imark = -1; 1752154123eaSLois Curfman McInnes if (v) { 175370f0671dSBarry Smith *v = v_p = mat->rowvalues; 175439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1756154123eaSLois Curfman McInnes else break; 1757154123eaSLois Curfman McInnes } 1758154123eaSLois Curfman McInnes imark = i; 175970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1761154123eaSLois Curfman McInnes } 1762154123eaSLois Curfman McInnes if (idx) { 176370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176470f0671dSBarry Smith if (imark > -1) { 1765ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176670f0671dSBarry Smith } else { 1767154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1769154123eaSLois Curfman McInnes else break; 1770154123eaSLois Curfman McInnes } 1771154123eaSLois Curfman McInnes imark = i; 177270f0671dSBarry Smith } 177370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177539e00950SLois Curfman McInnes } 17763f97c4b0SBarry Smith } else { 1777f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1778f4259b30SLisandro Dalcin if (v) *v = NULL; 17791ca473b0SSatish Balay } 1780154123eaSLois Curfman McInnes } 178139e00950SLois Curfman McInnes *nz = nztot; 17829566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17839566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178539e00950SLois Curfman McInnes } 178639e00950SLois Curfman McInnes 1787d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1788d71ae5a4SJacob Faibussowitsch { 17897a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17903a40ed3dSBarry Smith 17913a40ed3dSBarry Smith PetscFunctionBegin; 179228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17937a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1798d71ae5a4SJacob Faibussowitsch { 1799855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1800ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1801d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1802329f5518SBarry Smith PetscReal sum = 0.0; 1803fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 18046497c311SBarry Smith PetscMPIInt iN; 180504ca555eSLois Curfman McInnes 18063a40ed3dSBarry Smith PetscFunctionBegin; 180717699dbbSLois Curfman McInnes if (aij->size == 1) { 18089566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180937fa93a5SLois Curfman McInnes } else { 18109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 181204ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1813fff043a9SJunchao Zhang v = amata; 181404ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18159371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18169371c9d4SSatish Balay v++; 181704ca555eSLois Curfman McInnes } 1818fff043a9SJunchao Zhang v = bmata; 181904ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18209371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18219371c9d4SSatish Balay v++; 182204ca555eSLois Curfman McInnes } 1823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18248f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18259566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18263a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1827329f5518SBarry Smith PetscReal *tmp, *tmp2; 1828b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 183104ca555eSLois Curfman McInnes *norm = 0.0; 18329371c9d4SSatish Balay v = amata; 18339371c9d4SSatish Balay jj = amat->j; 183404ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18359371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18369371c9d4SSatish Balay v++; 183704ca555eSLois Curfman McInnes } 18389371c9d4SSatish Balay v = bmata; 18399371c9d4SSatish Balay jj = bmat->j; 184004ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18419371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18429371c9d4SSatish Balay v++; 184304ca555eSLois Curfman McInnes } 18446497c311SBarry Smith PetscCall(PetscMPIIntCast(mat->cmap->N, &iN)); 1845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1846d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184704ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184804ca555eSLois Curfman McInnes } 18499566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18509566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18523a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1853329f5518SBarry Smith PetscReal ntemp = 0.0; 1854d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18558e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185604ca555eSLois Curfman McInnes sum = 0.0; 185704ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18589371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18599371c9d4SSatish Balay v++; 186004ca555eSLois Curfman McInnes } 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186204ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18639371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18649371c9d4SSatish Balay v++; 186504ca555eSLois Curfman McInnes } 1866515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186704ca555eSLois Curfman McInnes } 1868462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18699566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1870ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187337fa93a5SLois Curfman McInnes } 18743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1875855ac2c5SLois Curfman McInnes } 1876855ac2c5SLois Curfman McInnes 1877ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1878d71ae5a4SJacob Faibussowitsch { 1879a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1880a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1881071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1882071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1883a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1884ce496241SStefano Zampini const MatScalar *pbv, *bv; 1885b7c46309SBarry Smith 18863a40ed3dSBarry Smith PetscFunctionBegin; 18877fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18889371c9d4SSatish Balay ma = A->rmap->n; 18899371c9d4SSatish Balay na = A->cmap->n; 18909371c9d4SSatish Balay mb = a->B->rmap->n; 18919371c9d4SSatish Balay nb = a->B->cmap->n; 18929371c9d4SSatish Balay ai = Aloc->i; 18939371c9d4SSatish Balay aj = Aloc->j; 18949371c9d4SSatish Balay bi = Bloc->i; 18959371c9d4SSatish Balay bj = Bloc->j; 1896fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189780bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189880bcc5a1SJed Brown PetscSFNode *oloc; 1899713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190080bcc5a1SJed Brown 19019566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190280bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19039566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1904cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190580bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19069566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190780bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190880bcc5a1SJed Brown /* map those to global */ 19099566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19119566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191357168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191457168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19159566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1916d4bb536fSBarry Smith 19179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19199566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19229566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1923fc4dec0aSBarry Smith } else { 1924fc4dec0aSBarry Smith B = *matout; 19259566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1926fc4dec0aSBarry Smith } 1927b7c46309SBarry Smith 1928f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1929a8661f62Sandi selinger A_diag = a->A; 1930a8661f62Sandi selinger B_diag = &b->A; 1931a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1932a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1933a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1934a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1935f79cb1a0Sandi selinger 1936f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1937ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1938f79cb1a0Sandi selinger 19394cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1940a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19417fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19429566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1943f79cb1a0Sandi selinger 1944b7c46309SBarry Smith /* copy over the B part */ 19459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1947ce496241SStefano Zampini pbv = bv; 1948d0f46423SBarry Smith row = A->rmap->rstart; 19492205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195061a2fbbaSHong Zhang cols_tmp = cols; 1951da668accSHong Zhang for (i = 0; i < mb; i++) { 1952da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19539566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19542205254eSKarl Rupp row++; 1955720a2405SPierre Jolivet if (pbv) pbv += ncol; 1956720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1957b7c46309SBarry Smith } 19589566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1960fc73b1b3SBarry Smith 19619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1963cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19640de55854SLois Curfman McInnes *matout = B; 19650de55854SLois Curfman McInnes } else { 19669566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19670de55854SLois Curfman McInnes } 19683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1969b7c46309SBarry Smith } 1970b7c46309SBarry Smith 1971ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1972d71ae5a4SJacob Faibussowitsch { 19734b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19744b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1975b1d57f15SBarry Smith PetscInt s1, s2, s3; 1976a008b906SSatish Balay 19773a40ed3dSBarry Smith PetscFunctionBegin; 19789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19794b967eb1SSatish Balay if (rr) { 19809566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198108401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19824b967eb1SSatish Balay /* Overlap communication with computation. */ 19839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1984a008b906SSatish Balay } 19854b967eb1SSatish Balay if (ll) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1988dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19894b967eb1SSatish Balay } 19904b967eb1SSatish Balay /* scale the diagonal block */ 1991dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19924b967eb1SSatish Balay 19934b967eb1SSatish Balay if (rr) { 19944b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19959566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19974b967eb1SSatish Balay } 19983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1999a008b906SSatish Balay } 2000a008b906SSatish Balay 2001ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2002d71ae5a4SJacob Faibussowitsch { 2003bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20043a40ed3dSBarry Smith 20053a40ed3dSBarry Smith PetscFunctionBegin; 20069566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2008bb5a7306SBarry Smith } 2009bb5a7306SBarry Smith 2010ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2011d71ae5a4SJacob Faibussowitsch { 2012d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2013d4bb536fSBarry Smith Mat a, b, c, d; 2014ace3abfcSBarry Smith PetscBool flg; 2015d4bb536fSBarry Smith 20163a40ed3dSBarry Smith PetscFunctionBegin; 20179371c9d4SSatish Balay a = matA->A; 20189371c9d4SSatish Balay b = matA->B; 20199371c9d4SSatish Balay c = matB->A; 20209371c9d4SSatish Balay d = matB->B; 2021d4bb536fSBarry Smith 20229566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202348a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2024462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2026d4bb536fSBarry Smith } 2027d4bb536fSBarry Smith 2028ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2029d71ae5a4SJacob Faibussowitsch { 2030cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2031cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2032cb5b572fSBarry Smith 2033cb5b572fSBarry Smith PetscFunctionBegin; 203433f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203533f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2036cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2037cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2038cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2039cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2040cb5b572fSBarry Smith then copying the submatrices */ 20419566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2042cb5b572fSBarry Smith } else { 20439566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20449566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2045cb5b572fSBarry Smith } 20469566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2048cb5b572fSBarry Smith } 2049cb5b572fSBarry Smith 2050001ddc4fSHong Zhang /* 2051001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2052001ddc4fSHong Zhang have different nonzero structure. 2053001ddc4fSHong Zhang */ 2054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2055d71ae5a4SJacob Faibussowitsch { 2056001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205795b7e79eSJed Brown 205895b7e79eSJed Brown PetscFunctionBegin; 205995b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206095b7e79eSJed Brown for (i = 0; i < m; i++) { 20618e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2062001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2063001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206495b7e79eSJed Brown nnz[i] = 0; 206595b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2066001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2067001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206895b7e79eSJed Brown nnz[i]++; 206995b7e79eSJed Brown } 207095b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207195b7e79eSJed Brown } 20723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207395b7e79eSJed Brown } 207495b7e79eSJed Brown 2075001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2076d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2077d71ae5a4SJacob Faibussowitsch { 2078001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2079001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2080001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2081001ddc4fSHong Zhang 2082001ddc4fSHong Zhang PetscFunctionBegin; 20839566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2085001ddc4fSHong Zhang } 2086001ddc4fSHong Zhang 2087ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2088d71ae5a4SJacob Faibussowitsch { 2089ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2090ac90fabeSBarry Smith 2091ac90fabeSBarry Smith PetscFunctionBegin; 2092ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20939566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20949566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2095ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20969566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2097ac90fabeSBarry Smith } else { 20989f5f6813SShri Abhyankar Mat B; 20999f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2100d9d719b4SStefano Zampini 21019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21039566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21049566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21059566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21069566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21079566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21109566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21119566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21129566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21139566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2114ac90fabeSBarry Smith } 21153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2116ac90fabeSBarry Smith } 2117ac90fabeSBarry Smith 21182726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2119354c94deSBarry Smith 2120ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2121d71ae5a4SJacob Faibussowitsch { 21225f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21235f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2124354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2125354c94deSBarry Smith 21269566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21279566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21285f80ce2aSJacob Faibussowitsch } 21293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2130354c94deSBarry Smith } 2131354c94deSBarry Smith 2132ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2133d71ae5a4SJacob Faibussowitsch { 213499cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213599cafbc1SBarry Smith 213699cafbc1SBarry Smith PetscFunctionBegin; 21379566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21389566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214099cafbc1SBarry Smith } 214199cafbc1SBarry Smith 2142ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2143d71ae5a4SJacob Faibussowitsch { 214499cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214599cafbc1SBarry Smith 214699cafbc1SBarry Smith PetscFunctionBegin; 21479566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21489566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215099cafbc1SBarry Smith } 215199cafbc1SBarry Smith 2152ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2153d71ae5a4SJacob Faibussowitsch { 2154c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2155475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 215662e5df07SMark Adams PetscScalar *vv; 2157475b8b61SHong Zhang Vec vB, vA; 215862e5df07SMark Adams const PetscScalar *va, *vb; 2159c91732d9SHong Zhang 2160c91732d9SHong Zhang PetscFunctionBegin; 2161c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21629566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2163475b8b61SHong Zhang 216462e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2165c91732d9SHong Zhang if (idx) { 2166475b8b61SHong Zhang for (i = 0; i < m; i++) { 2167d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2168c91732d9SHong Zhang } 2169c91732d9SHong Zhang } 2170c91732d9SHong Zhang 2171c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21739566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2174c91732d9SHong Zhang 21759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21769566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2177475b8b61SHong Zhang for (i = 0; i < m; i++) { 2178c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2179475b8b61SHong Zhang vv[i] = vb[i]; 2180c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2181475b8b61SHong Zhang } else { 2182475b8b61SHong Zhang vv[i] = va[i]; 21839371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2184c91732d9SHong Zhang } 2185c91732d9SHong Zhang } 218662e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 218762e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21889566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21899566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2193c91732d9SHong Zhang } 2194c91732d9SHong Zhang 2195eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2196eede4a3fSMark Adams { 2197eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2198eede4a3fSMark Adams Vec vB, vA; 2199eede4a3fSMark Adams 2200eede4a3fSMark Adams PetscFunctionBegin; 2201c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2202eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2203c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2204eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2205eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2206eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2207eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2208eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2209eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2210eede4a3fSMark Adams } 2211eede4a3fSMark Adams 2212ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2213d71ae5a4SJacob Faibussowitsch { 2214f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2215f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2216f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2217f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2218f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2219f07e67edSHong Zhang Vec diagV, offdiagV; 2220ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2221ce496241SStefano Zampini const PetscScalar *ba, *bav; 2222f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2223f07e67edSHong Zhang Mat B = mat->B; 2224f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2225c87e5d42SMatthew Knepley 2226c87e5d42SMatthew Knepley PetscFunctionBegin; 2227f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2228f07e67edSHong Zhang if (A->cmap->N == n) { 22299566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22309566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22319566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2235f07e67edSHong Zhang } else if (n == 0) { 2236f07e67edSHong Zhang if (m) { 22379566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22389371c9d4SSatish Balay for (r = 0; r < m; r++) { 22399371c9d4SSatish Balay a[r] = 0.0; 22409371c9d4SSatish Balay if (idx) idx[r] = -1; 22419371c9d4SSatish Balay } 22429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2243f07e67edSHong Zhang } 22443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2245f07e67edSHong Zhang } 2246f07e67edSHong Zhang 22479566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22489566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22499566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22509566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2251f07e67edSHong Zhang 2252f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2254ce496241SStefano Zampini ba = bav; 2255f07e67edSHong Zhang bi = b->i; 2256f07e67edSHong Zhang bj = b->j; 22579566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2258f07e67edSHong Zhang for (r = 0; r < m; r++) { 2259f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2260f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22619371c9d4SSatish Balay offdiagA[r] = *ba; 22629371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2263f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2264f07e67edSHong Zhang offdiagA[r] = 0.0; 2265f07e67edSHong Zhang 2266f07e67edSHong Zhang /* Find first hole in the cmap */ 2267f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2268f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2269f07e67edSHong Zhang if (col > j && j < cstart) { 2270f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2271f07e67edSHong Zhang break; 2272f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2273f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2274f07e67edSHong Zhang break; 2275f07e67edSHong Zhang } 2276f07e67edSHong Zhang } 22774e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2278f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2279f07e67edSHong Zhang if (ncols == 0) { 2280f07e67edSHong Zhang if (cstart) { 2281f07e67edSHong Zhang offdiagIdx[r] = 0; 2282f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2283f07e67edSHong Zhang } else { /* ncols > 0 */ 2284f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2285f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2286f07e67edSHong Zhang } 2287f07e67edSHong Zhang } 2288f07e67edSHong Zhang } 2289f07e67edSHong Zhang 2290f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22919371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22929371c9d4SSatish Balay offdiagA[r] = *ba; 22939371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22949371c9d4SSatish Balay } 22959371c9d4SSatish Balay ba++; 22969371c9d4SSatish Balay bj++; 2297f07e67edSHong Zhang } 2298f07e67edSHong Zhang } 2299f07e67edSHong Zhang 23009566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23019566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2302f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2303f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2304f07e67edSHong Zhang a[r] = diagA[r]; 2305f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2306f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2307f07e67edSHong Zhang a[r] = diagA[r]; 2308c87e5d42SMatthew Knepley if (idx) { 2309f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2310f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2311f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2312f07e67edSHong Zhang } 2313f07e67edSHong Zhang } else { 2314f07e67edSHong Zhang a[r] = offdiagA[r]; 2315f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2316c87e5d42SMatthew Knepley } 2317c87e5d42SMatthew Knepley } 23189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23249566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2326c87e5d42SMatthew Knepley } 2327c87e5d42SMatthew Knepley 2328ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2329d71ae5a4SJacob Faibussowitsch { 233003bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2331fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2332fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233303bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233403bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233503bc72f1SMatthew Knepley Vec diagV, offdiagV; 2336ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2337ce496241SStefano Zampini const PetscScalar *ba, *bav; 2338fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2339fa213d2fSHong Zhang Mat B = mat->B; 2340fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234103bc72f1SMatthew Knepley 234203bc72f1SMatthew Knepley PetscFunctionBegin; 2343fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2344fa213d2fSHong Zhang if (A->cmap->N == n) { 23459566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23469566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23479566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2351fa213d2fSHong Zhang } else if (n == 0) { 2352fa213d2fSHong Zhang if (m) { 23539566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23549371c9d4SSatish Balay for (r = 0; r < m; r++) { 23559371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23569371c9d4SSatish Balay if (idx) idx[r] = -1; 23579371c9d4SSatish Balay } 23589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2359fa213d2fSHong Zhang } 23603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2361fa213d2fSHong Zhang } 2362fa213d2fSHong Zhang 23639566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23649566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23659566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23669566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2367fa213d2fSHong Zhang 2368fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2370ce496241SStefano Zampini ba = bav; 2371fa213d2fSHong Zhang bi = b->i; 2372fa213d2fSHong Zhang bj = b->j; 23739566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2374fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2375fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2376fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23779371c9d4SSatish Balay offdiagA[r] = *ba; 23789371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2379fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2380fa213d2fSHong Zhang offdiagA[r] = 0.0; 2381fa213d2fSHong Zhang 2382fa213d2fSHong Zhang /* Find first hole in the cmap */ 2383fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2384fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2385fa213d2fSHong Zhang if (col > j && j < cstart) { 2386fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2387fa213d2fSHong Zhang break; 2388fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2389fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2390fa213d2fSHong Zhang break; 2391fa213d2fSHong Zhang } 2392fa213d2fSHong Zhang } 23934e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2394fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2395fa213d2fSHong Zhang if (ncols == 0) { 2396fa213d2fSHong Zhang if (cstart) { 2397fa213d2fSHong Zhang offdiagIdx[r] = 0; 2398fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2399fa213d2fSHong Zhang } else { /* ncols > 0 */ 2400fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2401fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2402fa213d2fSHong Zhang } 2403fa213d2fSHong Zhang } 2404fa213d2fSHong Zhang } 2405fa213d2fSHong Zhang 2406fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24079371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24089371c9d4SSatish Balay offdiagA[r] = *ba; 24099371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24109371c9d4SSatish Balay } 24119371c9d4SSatish Balay ba++; 24129371c9d4SSatish Balay bj++; 2413fa213d2fSHong Zhang } 2414fa213d2fSHong Zhang } 2415fa213d2fSHong Zhang 24169566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2418fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2419fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242003bc72f1SMatthew Knepley a[r] = diagA[r]; 2421fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2422fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2423fa213d2fSHong Zhang a[r] = diagA[r]; 2424fa213d2fSHong Zhang if (idx) { 2425fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242603bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2427fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2428fa213d2fSHong Zhang } 242903bc72f1SMatthew Knepley } else { 243003bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2431fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243203bc72f1SMatthew Knepley } 243303bc72f1SMatthew Knepley } 24349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24409566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244203bc72f1SMatthew Knepley } 244303bc72f1SMatthew Knepley 2444ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2445d71ae5a4SJacob Faibussowitsch { 2446c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24471a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24481a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2449c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2450c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2451c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2452ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2453ce496241SStefano Zampini const PetscScalar *ba, *bav; 24541a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24551a254869SHong Zhang Mat B = mat->B; 24561a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2457c87e5d42SMatthew Knepley 2458c87e5d42SMatthew Knepley PetscFunctionBegin; 24591a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24601a254869SHong Zhang if (A->cmap->N == n) { 24619566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24629566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24639566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24671a254869SHong Zhang } else if (n == 0) { 24681a254869SHong Zhang if (m) { 24699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24709371c9d4SSatish Balay for (r = 0; r < m; r++) { 24719371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24729371c9d4SSatish Balay if (idx) idx[r] = -1; 24739371c9d4SSatish Balay } 24749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24751a254869SHong Zhang } 24763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24771a254869SHong Zhang } 24781a254869SHong Zhang 24799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24809566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24819566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24829566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24831a254869SHong Zhang 24841a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2486ce496241SStefano Zampini ba = bav; 24871a254869SHong Zhang bi = b->i; 24881a254869SHong Zhang bj = b->j; 24899566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24901a254869SHong Zhang for (r = 0; r < m; r++) { 24911a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24921a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24939371c9d4SSatish Balay offdiagA[r] = *ba; 24949371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24951a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24961a254869SHong Zhang offdiagA[r] = 0.0; 24971a254869SHong Zhang 24981a254869SHong Zhang /* Find first hole in the cmap */ 24991a254869SHong Zhang for (j = 0; j < ncols; j++) { 25001a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25011a254869SHong Zhang if (col > j && j < cstart) { 25021a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25031a254869SHong Zhang break; 25041a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25051a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25061a254869SHong Zhang break; 25071a254869SHong Zhang } 25081a254869SHong Zhang } 25094e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25101a254869SHong Zhang /* a hole is outside compressed Bcols */ 25111a254869SHong Zhang if (ncols == 0) { 25121a254869SHong Zhang if (cstart) { 25131a254869SHong Zhang offdiagIdx[r] = 0; 25141a254869SHong Zhang } else offdiagIdx[r] = cend; 25151a254869SHong Zhang } else { /* ncols > 0 */ 25161a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25171a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25181a254869SHong Zhang } 25191a254869SHong Zhang } 25201a254869SHong Zhang } 25211a254869SHong Zhang 25221a254869SHong Zhang for (j = 0; j < ncols; j++) { 25239371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25249371c9d4SSatish Balay offdiagA[r] = *ba; 25259371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25269371c9d4SSatish Balay } 25279371c9d4SSatish Balay ba++; 25289371c9d4SSatish Balay bj++; 25291a254869SHong Zhang } 25301a254869SHong Zhang } 25311a254869SHong Zhang 25329566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25339566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25341a254869SHong Zhang for (r = 0; r < m; ++r) { 25351a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2536c87e5d42SMatthew Knepley a[r] = diagA[r]; 25371a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25381a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25391a254869SHong Zhang a[r] = diagA[r]; 25401a254869SHong Zhang if (idx) { 25411a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2542c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25431a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25441a254869SHong Zhang } 2545c87e5d42SMatthew Knepley } else { 2546c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25471a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2548c87e5d42SMatthew Knepley } 2549c87e5d42SMatthew Knepley } 25509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25539566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25569566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2558c87e5d42SMatthew Knepley } 2559c87e5d42SMatthew Knepley 2560d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2561d71ae5a4SJacob Faibussowitsch { 2562f6d58c54SBarry Smith Mat *dummy; 25635494a064SHong Zhang 25645494a064SHong Zhang PetscFunctionBegin; 25659566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2566f6d58c54SBarry Smith *newmat = *dummy; 25679566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25695494a064SHong Zhang } 25705494a064SHong Zhang 2571ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2572d71ae5a4SJacob Faibussowitsch { 2573bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2574bbead8a2SBarry Smith 2575bbead8a2SBarry Smith PetscFunctionBegin; 25769566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25777b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2579bbead8a2SBarry Smith } 2580bbead8a2SBarry Smith 2581d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2582d71ae5a4SJacob Faibussowitsch { 258373a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258473a71a0fSBarry Smith 258573a71a0fSBarry Smith PetscFunctionBegin; 258608401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25879566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2588679944adSJunchao Zhang if (x->assembled) { 25899566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2590679944adSJunchao Zhang } else { 25919566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2592679944adSJunchao Zhang } 25939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259673a71a0fSBarry Smith } 2597bbead8a2SBarry Smith 2598ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2599d71ae5a4SJacob Faibussowitsch { 2600b1b1104fSBarry Smith PetscFunctionBegin; 2601b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2602b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2604b1b1104fSBarry Smith } 2605b1b1104fSBarry Smith 2606b1b1104fSBarry Smith /*@ 2607f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2608f2afee66SBarry Smith 26092ef1f0ffSBarry Smith Not Collective 2610f2afee66SBarry Smith 2611f2afee66SBarry Smith Input Parameter: 2612f2afee66SBarry Smith . A - the matrix 2613f2afee66SBarry Smith 2614f2afee66SBarry Smith Output Parameter: 2615f2afee66SBarry Smith . nz - the number of nonzeros 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Level: advanced 2618f2afee66SBarry Smith 2619fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2620f2afee66SBarry Smith @*/ 2621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2622d71ae5a4SJacob Faibussowitsch { 2623f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2624f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2625dfebb78cSStefano Zampini PetscBool isaij; 2626f2afee66SBarry Smith 2627f2afee66SBarry Smith PetscFunctionBegin; 2628dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2629dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2630f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2632f2afee66SBarry Smith } 2633f2afee66SBarry Smith 2634f2afee66SBarry Smith /*@ 2635b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2636b1b1104fSBarry Smith 2637c3339decSBarry Smith Collective 2638b1b1104fSBarry Smith 2639b1b1104fSBarry Smith Input Parameters: 2640b1b1104fSBarry Smith + A - the matrix 264111a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2642b1b1104fSBarry Smith 264396a0c994SBarry Smith Level: advanced 264496a0c994SBarry Smith 2645fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2646b1b1104fSBarry Smith @*/ 2647d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2648d71ae5a4SJacob Faibussowitsch { 2649b1b1104fSBarry Smith PetscFunctionBegin; 2650cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2652b1b1104fSBarry Smith } 2653b1b1104fSBarry Smith 2654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2655d71ae5a4SJacob Faibussowitsch { 2656b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2657b1b1104fSBarry Smith 2658b1b1104fSBarry Smith PetscFunctionBegin; 2659d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2660b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26621baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2663d0609cedSBarry Smith PetscOptionsHeadEnd(); 26643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2665b1b1104fSBarry Smith } 2666b1b1104fSBarry Smith 2667ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2668d71ae5a4SJacob Faibussowitsch { 26697d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2670c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26717d68702bSBarry Smith 26727d68702bSBarry Smith PetscFunctionBegin; 2673c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26755519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2676b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2678b83222d8SBarry Smith aij->nonew = nonew; 26797d68702bSBarry Smith } 26809566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26827d68702bSBarry Smith } 26837d68702bSBarry Smith 2684ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2685d71ae5a4SJacob Faibussowitsch { 26863b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26873b49f96aSBarry Smith 26883b49f96aSBarry Smith PetscFunctionBegin; 268908401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26909566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26913b49f96aSBarry Smith if (d) { 26923b49f96aSBarry Smith PetscInt rstart; 26939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26943b49f96aSBarry Smith *d += rstart; 26953b49f96aSBarry Smith } 26963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26973b49f96aSBarry Smith } 26983b49f96aSBarry Smith 2699ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2700d71ae5a4SJacob Faibussowitsch { 2701a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2702a8ee9fb5SBarry Smith 2703a8ee9fb5SBarry Smith PetscFunctionBegin; 27049566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2706a8ee9fb5SBarry Smith } 27073b49f96aSBarry Smith 270858c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2709dec0b466SHong Zhang { 2710dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2711dec0b466SHong Zhang 2712dec0b466SHong Zhang PetscFunctionBegin; 271358c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 271458c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2716dec0b466SHong Zhang } 2717dec0b466SHong Zhang 2718cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2719cda55fadSBarry Smith MatGetRow_MPIAIJ, 2720cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2721cda55fadSBarry Smith MatMult_MPIAIJ, 272297304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27237c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27247c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2725f4259b30SLisandro Dalcin NULL, 2726f4259b30SLisandro Dalcin NULL, 2727f4259b30SLisandro Dalcin NULL, 2728f4259b30SLisandro Dalcin /*10*/ NULL, 2729f4259b30SLisandro Dalcin NULL, 2730f4259b30SLisandro Dalcin NULL, 273141f059aeSBarry Smith MatSOR_MPIAIJ, 2732b7c46309SBarry Smith MatTranspose_MPIAIJ, 273397304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2734cda55fadSBarry Smith MatEqual_MPIAIJ, 2735cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2736cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2737cda55fadSBarry Smith MatNorm_MPIAIJ, 273897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2739cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2740cda55fadSBarry Smith MatSetOption_MPIAIJ, 2741cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2742d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 2746f4259b30SLisandro Dalcin NULL, 274726cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2748f4259b30SLisandro Dalcin NULL, 2749f4259b30SLisandro Dalcin NULL, 2750a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2751f4259b30SLisandro Dalcin NULL, 2752d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2753f4259b30SLisandro Dalcin NULL, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756f4259b30SLisandro Dalcin NULL, 2757d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27587dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2759cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2760cda55fadSBarry Smith MatGetValues_MPIAIJ, 2761cb5b572fSBarry Smith MatCopy_MPIAIJ, 2762d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2763cda55fadSBarry Smith MatScale_MPIAIJ, 27647d68702bSBarry Smith MatShift_MPIAIJ, 276599e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2766564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276773a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27688a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27698a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2770f4259b30SLisandro Dalcin NULL, 2771f4259b30SLisandro Dalcin NULL, 277293dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2773f4259b30SLisandro Dalcin NULL, 2774cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277572e6a0cfSJed Brown MatPermute_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 27777dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2778e03a110bSBarry Smith MatDestroy_MPIAIJ, 2779e03a110bSBarry Smith MatView_MPIAIJ, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 2782f4259b30SLisandro Dalcin /*64*/ NULL, 2783f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2784f4259b30SLisandro Dalcin NULL, 2785f4259b30SLisandro Dalcin NULL, 2786f4259b30SLisandro Dalcin NULL, 2787d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2788c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 27933acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2794b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2798f4259b30SLisandro Dalcin /*80*/ NULL, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 28015bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28026cff0a6bSPierre Jolivet NULL, 2803f4259b30SLisandro Dalcin NULL, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 2807f4259b30SLisandro Dalcin /*89*/ NULL, 2808f4259b30SLisandro Dalcin NULL, 280926be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2813f4259b30SLisandro Dalcin NULL, 2814f4259b30SLisandro Dalcin NULL, 2815f4259b30SLisandro Dalcin NULL, 2816b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28174222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2818f4259b30SLisandro Dalcin NULL, 2819f4259b30SLisandro Dalcin NULL, 28202fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2821f4259b30SLisandro Dalcin NULL, 2822d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282399cafbc1SBarry Smith MatRealPart_MPIAIJ, 282469db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2825f4259b30SLisandro Dalcin NULL, 2826f4259b30SLisandro Dalcin NULL, 2827f4259b30SLisandro Dalcin /*109*/ NULL, 2828f4259b30SLisandro Dalcin NULL, 28295494a064SHong Zhang MatGetRowMin_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 28313b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2832d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2833f4259b30SLisandro Dalcin NULL, 2834c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin NULL, 2837b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2838f4259b30SLisandro Dalcin NULL, 2839f4259b30SLisandro Dalcin NULL, 2840f4259b30SLisandro Dalcin NULL, 2841b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2842f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2843a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2844bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2845a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28467dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2847f4259b30SLisandro Dalcin /*129*/ NULL, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 2850187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2851f4259b30SLisandro Dalcin NULL, 2852f4259b30SLisandro Dalcin /*134*/ NULL, 2853f4259b30SLisandro Dalcin NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856f4259b30SLisandro Dalcin NULL, 285746533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2858f4259b30SLisandro Dalcin NULL, 2859f4259b30SLisandro Dalcin NULL, 28609c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2861a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28624222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2863f4259b30SLisandro Dalcin /*145*/ NULL, 2864f4259b30SLisandro Dalcin NULL, 286572833a62Smarkadams4 NULL, 286672833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28672d776b49SBarry Smith NULL, 2868dec0b466SHong Zhang /*150*/ NULL, 2869eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28704cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287142ce410bSJunchao Zhang NULL, 287242ce410bSJunchao Zhang NULL, 28734cc2b5b5SPierre Jolivet NULL}; 287436ce4990SBarry Smith 2875ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2876d71ae5a4SJacob Faibussowitsch { 28772e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28782e8a6d31SBarry Smith 28792e8a6d31SBarry Smith PetscFunctionBegin; 28809566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28819566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28832e8a6d31SBarry Smith } 28842e8a6d31SBarry Smith 2885ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2886d71ae5a4SJacob Faibussowitsch { 28872e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28882e8a6d31SBarry Smith 28892e8a6d31SBarry Smith PetscFunctionBegin; 28909566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28919566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28932e8a6d31SBarry Smith } 28948a729477SBarry Smith 2895d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2896d71ae5a4SJacob Faibussowitsch { 2897ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28985d2a9ed1SStefano Zampini PetscMPIInt size; 2899a23d5eceSKris Buschelman 2900a23d5eceSKris Buschelman PetscFunctionBegin; 2901ad79cf63SBarry Smith if (B->hash_active) { 2902aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2903ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2904ad79cf63SBarry Smith } 29059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2907899cda47SBarry Smith 2908cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2909eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2910cb7b82ddSBarry Smith #else 29119566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2912cb7b82ddSBarry Smith #endif 29139566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29159566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2916cb7b82ddSBarry Smith 29179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2918c508b908SBarry Smith 2919c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2925c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2926cb7b82ddSBarry Smith 2927c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2928ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29299566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29329566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2933c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2934899cda47SBarry Smith 29359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2937526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2938cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293915001458SStefano Zampini B->assembled = PETSC_FALSE; 29403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2941a23d5eceSKris Buschelman } 2942a23d5eceSKris Buschelman 2943ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2944d71ae5a4SJacob Faibussowitsch { 2945ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2946846b4da1SFande Kong 2947846b4da1SFande Kong PetscFunctionBegin; 2948846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2951eb14dd14SAlex Lindsay if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 2952eb14dd14SAlex Lindsay else { 2953846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2954eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2955846b4da1SFande Kong #else 29569566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2957846b4da1SFande Kong #endif 29589566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 2960eb14dd14SAlex Lindsay } 29619566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2962846b4da1SFande Kong 29639566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29649566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2965846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2966846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2967846b4da1SFande Kong B->assembled = PETSC_FALSE; 29683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2969846b4da1SFande Kong } 2970846b4da1SFande Kong 2971d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2972d71ae5a4SJacob Faibussowitsch { 2973d6dfbf8fSBarry Smith Mat mat; 2974416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2975d6dfbf8fSBarry Smith 29763a40ed3dSBarry Smith PetscFunctionBegin; 2977f4259b30SLisandro Dalcin *newmat = NULL; 29789566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29809566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29819566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2982273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2983e1b6402fSHong Zhang 2984d5f3da31SBarry Smith mat->factortype = matin->factortype; 2985501880eeSStefano Zampini mat->assembled = matin->assembled; 2986e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2987d6dfbf8fSBarry Smith 298817699dbbSLois Curfman McInnes a->size = oldmat->size; 298917699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2990e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2991e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2992501880eeSStefano Zampini a->rowindices = NULL; 2993501880eeSStefano Zampini a->rowvalues = NULL; 2994bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2995d6dfbf8fSBarry Smith 29969566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29979566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2998420957c1SBarry Smith if (matin->hash_active) { 2999420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3000420957c1SBarry Smith } else { 3001420957c1SBarry Smith mat->preallocated = matin->preallocated; 30022ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3003aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3004eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3005b1fc9764SSatish Balay #else 30069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30079566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3008b1fc9764SSatish Balay #endif 3009501880eeSStefano Zampini } else a->colmap = NULL; 30103f41c07dSBarry Smith if (oldmat->garray) { 3011b1d57f15SBarry Smith PetscInt len; 3012d0f46423SBarry Smith len = oldmat->B->cmap->n; 30139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30149566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3015501880eeSStefano Zampini } else a->garray = NULL; 3016d6dfbf8fSBarry Smith 30170de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30180de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30190de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3020aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3021cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3022cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3023cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3024cff58d65SJunchao Zhang } 30259566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30269566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3027420957c1SBarry Smith } 30289566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30298a729477SBarry Smith *newmat = mat; 30303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30318a729477SBarry Smith } 3032416022c9SBarry Smith 3033d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3034d71ae5a4SJacob Faibussowitsch { 303552f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303652f91c60SVaclav Hapla 303752f91c60SVaclav Hapla PetscFunctionBegin; 303852f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303952f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3040c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30419566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30429566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 304452f91c60SVaclav Hapla if (isbinary) { 30459566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304652f91c60SVaclav Hapla } else if (ishdf5) { 304752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30489566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304952f91c60SVaclav Hapla #else 305052f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 305152f91c60SVaclav Hapla #endif 305252f91c60SVaclav Hapla } else { 305398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 305452f91c60SVaclav Hapla } 30553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305652f91c60SVaclav Hapla } 305752f91c60SVaclav Hapla 3058d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3059d71ae5a4SJacob Faibussowitsch { 30603ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30613ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30623ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30638fb81238SShri Abhyankar 30648fb81238SShri Abhyankar PetscFunctionBegin; 30659566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30668fb81238SShri Abhyankar 30673ea6fe3dSLisandro Dalcin /* read in matrix header */ 30689566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306908401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30709371c9d4SSatish Balay M = header[1]; 30719371c9d4SSatish Balay N = header[2]; 30729371c9d4SSatish Balay nz = header[3]; 307308401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 307408401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307508401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307608ea439dSMark F. Adams 30773ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30789566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30793ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30803ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30813ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30848fb81238SShri Abhyankar 30853ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30869566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3087aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30888fb81238SShri Abhyankar 30893ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30909566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30939371c9d4SSatish Balay rowidxs[0] = 0; 30949371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30951690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3096462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309708401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309838b83642SBarry Smith } 309938b83642SBarry Smith 31003ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31029566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31039566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31043ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31059566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31069566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31079566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31098fb81238SShri Abhyankar } 31108fb81238SShri Abhyankar 31113782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3112ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3113d71ae5a4SJacob Faibussowitsch { 31144aa3045dSJed Brown IS iscol_local; 3115c5e4d11fSDmitry Karpeev PetscBool isstride; 3116*9725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31173782ecc7SHong Zhang 31183782ecc7SHong Zhang PetscFunctionBegin; 31193782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31213782ecc7SHong Zhang 3122c5e4d11fSDmitry Karpeev if (isstride) { 3123c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31249566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31259566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3127*9725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3128c5e4d11fSDmitry Karpeev } 31293782ecc7SHong Zhang 3130*9725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3131c5e4d11fSDmitry Karpeev if (gisstride) { 3132c5e4d11fSDmitry Karpeev PetscInt N; 31339566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31349566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31359566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31369566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3137c5e4d11fSDmitry Karpeev } else { 3138c5bfad50SMark F. Adams PetscInt cbs; 31399566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31409566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31419566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3142b79d0421SJed Brown } 31433782ecc7SHong Zhang 31443782ecc7SHong Zhang *isseq = iscol_local; 31453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3146c5e4d11fSDmitry Karpeev } 31478d2139bdSHong Zhang 3148ddfdf956SHong Zhang /* 31499c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31509c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3151ddfdf956SHong Zhang 3152ddfdf956SHong Zhang Input Parameters: 315327430b45SBarry Smith + mat - matrix 315427430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31559c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315627430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3157ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315827430b45SBarry Smith 315927430b45SBarry Smith Output Parameters: 316027430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 316127430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 316227430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 316327430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3164ddfdf956SHong Zhang */ 3165ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3166d71ae5a4SJacob Faibussowitsch { 3167040216a4SHong Zhang Vec x, cmap; 3168040216a4SHong Zhang const PetscInt *is_idx; 3169040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31709c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3171040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3172040216a4SHong Zhang Mat B = a->B; 3173040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3174a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31758b3fa1f7SHong Zhang MPI_Comm comm; 31763a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31773782ecc7SHong Zhang 31783782ecc7SHong Zhang PetscFunctionBegin; 31799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31818b3fa1f7SHong Zhang 3182ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31839566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31849566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31859566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31869566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31870a351717SHong Zhang 31889c988bcaSHong Zhang /* Get start indices */ 31899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3190ddfdf956SHong Zhang isstart -= ncols; 31919566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3192040216a4SHong Zhang 31939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31949566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31959566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3197ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31988b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3199ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32009c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32018b3fa1f7SHong Zhang } 32029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32049566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32058b3fa1f7SHong Zhang 32069c988bcaSHong Zhang /* Get iscol_d */ 32079566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32089566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32099566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3210feb78a15SHong Zhang 32119c988bcaSHong Zhang /* Get isrow_d */ 32129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3213feb78a15SHong Zhang rstart = mat->rmap->rstart; 32149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32169c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3218feb78a15SHong Zhang 32199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32209566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32219566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3222feb78a15SHong Zhang 32239c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3226ddfdf956SHong Zhang 32279566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322807250d77SHong Zhang 32299566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 323164efcef9SHong Zhang 32329c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3233ddfdf956SHong Zhang /* off-process column indices */ 32349c988bcaSHong Zhang count = 0; 32359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3237feb78a15SHong Zhang 32389566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32399566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32408b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3241f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32429c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32431c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32441c645242SHong Zhang count++; 32458b3fa1f7SHong Zhang } 32468b3fa1f7SHong Zhang } 32479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324907250d77SHong Zhang 32509566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3251b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3252b6d9b4e0SHong Zhang 32539566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32549c988bcaSHong Zhang *garray = cmap1; 32559c988bcaSHong Zhang 32569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32579566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32589566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3260040216a4SHong Zhang } 3261040216a4SHong Zhang 3262b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3263d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3264d71ae5a4SJacob Faibussowitsch { 3265b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32661fd43edeSHong Zhang Mat M = NULL; 32673b00a383SHong Zhang MPI_Comm comm; 3268b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32693b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3270b20e2604SHong Zhang PetscInt n; 32713b00a383SHong Zhang 32723b00a383SHong Zhang PetscFunctionBegin; 32739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32743b00a383SHong Zhang 32753b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3276b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32779566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327828b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32793b00a383SHong Zhang 32809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 328128b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32823b00a383SHong Zhang 32839566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 328428b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32853b00a383SHong Zhang 3286b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3287b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32889566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 329048a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32933b00a383SHong Zhang 32943b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32959c988bcaSHong Zhang const PetscInt *garray; 3296b20e2604SHong Zhang PetscInt BsubN; 32973b00a383SHong Zhang 3298b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32999566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33003b00a383SHong Zhang 3301b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33029566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33039566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33043b00a383SHong Zhang 33059c988bcaSHong Zhang /* Create submatrix M */ 33069566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33073b00a383SHong Zhang 3308b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3309b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33107cfce09cSHong Zhang 33119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3312b20e2604SHong Zhang n = asub->B->cmap->N; 3313b20e2604SHong Zhang if (BsubN > n) { 3314c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33157cfce09cSHong Zhang const PetscInt *idx; 33169c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33179566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33187cfce09cSHong Zhang 33199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33207cfce09cSHong Zhang j = 0; 33219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3322b20e2604SHong Zhang for (i = 0; i < n; i++) { 33237cfce09cSHong Zhang if (j >= BsubN) break; 33249c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33257cfce09cSHong Zhang 33269c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33277cfce09cSHong Zhang idx_new[i] = idx[j++]; 332898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33297cfce09cSHong Zhang } 33309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33317cfce09cSHong Zhang 33329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33339566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33347cfce09cSHong Zhang 3335b20e2604SHong Zhang } else if (BsubN < n) { 333698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3337b20e2604SHong Zhang } 33387cfce09cSHong Zhang 33399566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3340b20e2604SHong Zhang *submat = M; 33413b00a383SHong Zhang 3342e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33453b00a383SHong Zhang 33469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33483b00a383SHong Zhang 33499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33513b00a383SHong Zhang } 33523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33533b00a383SHong Zhang } 33543b00a383SHong Zhang 3355d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3356d71ae5a4SJacob Faibussowitsch { 33571358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33583782ecc7SHong Zhang PetscInt csize; 335918e627e3SHong Zhang PetscInt n, i, j, start, end; 33604a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33613782ecc7SHong Zhang MPI_Comm comm; 33623782ecc7SHong Zhang 33633782ecc7SHong Zhang PetscFunctionBegin; 3364bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3365a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33668f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3368d5761cdaSHong Zhang if (isrow_d) { 3369d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3370d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3371d5761cdaSHong Zhang } else { 33729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3373d5761cdaSHong Zhang if (iscol_local) { 3374d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3375d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3376d5761cdaSHong Zhang } 3377d5761cdaSHong Zhang } 33788f69fa7bSHong Zhang } else { 3379e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 338018e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33819566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33823782ecc7SHong Zhang if (!n) { 338318e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33843782ecc7SHong Zhang } else { 33859566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3387ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33888f69fa7bSHong Zhang } 33893782ecc7SHong Zhang 3390e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 339118e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 339318e627e3SHong Zhang if (!n) { 339418e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339518e627e3SHong Zhang } else { 33969566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33979566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 339818e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339918e627e3SHong Zhang } 340018e627e3SHong Zhang 34019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3402462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 340318e627e3SHong Zhang sameRowDist = tsameDist[0]; 340418e627e3SHong Zhang } 340518e627e3SHong Zhang 340618e627e3SHong Zhang if (sameRowDist) { 3407b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34083b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3411b20e2604SHong Zhang } else { /* sameRowDist */ 34123b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34131358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34141358a193SHong Zhang PetscBool sorted; 34159566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34169566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34179566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 341808401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34191358a193SHong Zhang 34209566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34211358a193SHong Zhang if (sorted) { 34221358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34253782ecc7SHong Zhang } 34261358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342748c0d076SHong Zhang IS iscol_sub; 34289566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342948c0d076SHong Zhang if (iscol_sub) { 34309566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343248c0d076SHong Zhang } 34331358a193SHong Zhang } 34341358a193SHong Zhang } 34351358a193SHong Zhang } 34363782ecc7SHong Zhang 3437bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34383782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 344028b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34413782ecc7SHong Zhang } else { 344248a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34431358a193SHong Zhang } 34443782ecc7SHong Zhang 34459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34478f69fa7bSHong Zhang 3448b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3451b79d0421SJed Brown } 34523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34534aa3045dSJed Brown } 34544aa3045dSJed Brown 3455feb78a15SHong Zhang /*@C 345611a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3457feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3458feb78a15SHong Zhang 3459d083f849SBarry Smith Collective 3460feb78a15SHong Zhang 3461feb78a15SHong Zhang Input Parameters: 3462feb78a15SHong Zhang + comm - MPI communicator 3463feb78a15SHong Zhang . A - "diagonal" portion of matrix 3464b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34652ef1f0ffSBarry Smith - garray - global index of `B` columns 3466feb78a15SHong Zhang 3467feb78a15SHong Zhang Output Parameter: 34682ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 346927430b45SBarry Smith 3470feb78a15SHong Zhang Level: advanced 3471feb78a15SHong Zhang 3472feb78a15SHong Zhang Notes: 347311a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347411a5261eSBarry Smith 34752ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3476feb78a15SHong Zhang 34771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3478feb78a15SHong Zhang @*/ 3479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3480d71ae5a4SJacob Faibussowitsch { 3481feb78a15SHong Zhang Mat_MPIAIJ *maij; 3482e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3483a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3484ce496241SStefano Zampini const PetscScalar *oa; 3485e489de8fSHong Zhang Mat Bnew; 3486feb78a15SHong Zhang PetscInt m, n, N; 34874ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3488feb78a15SHong Zhang 3489feb78a15SHong Zhang PetscFunctionBegin; 34909566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34919566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 349208401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 349337a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3494b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 349508401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3496feb78a15SHong Zhang 3497e489de8fSHong Zhang /* Get global columns of mat */ 3498462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3499feb78a15SHong Zhang 35009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 35014ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35024ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35034ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35044ab4d6f4SRichard Tran Mills 350537a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3506feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3507feb78a15SHong Zhang 3508feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3509feb78a15SHong Zhang 35109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3512feb78a15SHong Zhang 3513e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3514feb78a15SHong Zhang maij->A = A; 3515feb78a15SHong Zhang 3516a5348796SHong Zhang nz = oi[m]; 3517a5348796SHong Zhang for (i = 0; i < nz; i++) { 3518a5348796SHong Zhang col = oj[i]; 3519a5348796SHong Zhang oj[i] = garray[col]; 3520feb78a15SHong Zhang } 3521feb78a15SHong Zhang 3522e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35249566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3526e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3527e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3528e489de8fSHong Zhang maij->B = Bnew; 3529d5761cdaSHong Zhang 353008401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3531d5761cdaSHong Zhang 3532d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3533d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3535d5761cdaSHong Zhang 3536e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3537e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3538feb78a15SHong Zhang 3539a5348796SHong Zhang /* condense columns of maij->B */ 35409566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35439566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35449566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3546feb78a15SHong Zhang } 3547feb78a15SHong Zhang 3548ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35494aa3045dSJed Brown 3550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3551d71ae5a4SJacob Faibussowitsch { 355298b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 355385f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 355498b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35551fd43edeSHong Zhang Mat M, Msub, B = a->B; 355698b658c4SHong Zhang MatScalar *aa; 355700e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3558a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355998b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 356098b658c4SHong Zhang IS iscol_sub, iscmap; 356198b658c4SHong Zhang const PetscInt *is_idx, *cmap; 356218e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3563a31a438cSHong Zhang MPI_Comm comm; 35647e2c5f70SBarry Smith 3565a0ff6018SBarry Smith PetscFunctionBegin; 35669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3567d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356928b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3571d5761cdaSHong Zhang 35729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 357328b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3574d5761cdaSHong Zhang 35759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 357628b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3577d5761cdaSHong Zhang 35789566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3579d5761cdaSHong Zhang 3580d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35813b00a383SHong Zhang PetscBool flg; 35823b00a383SHong Zhang 35839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35849566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3585bcae8d28SHong Zhang 35863b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3587366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35889566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3589366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3590462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3591366a327dSHong Zhang if (allcolumns) { 3592366a327dSHong Zhang iscol_sub = iscol_local; 35939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35949566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3595366a327dSHong Zhang 35963b00a383SHong Zhang } else { 35971358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3598244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36028d2139bdSHong Zhang count = 0; 3603a31a438cSHong Zhang k = 0; 3604a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3605a31a438cSHong Zhang j = is_idx[i]; 3606a31a438cSHong Zhang if (j >= cstart && j < cend) { 3607a31a438cSHong Zhang /* diagonal part of mat */ 36088d2139bdSHong Zhang idx[count] = j; 3609366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36104a3daf6eSHong Zhang } else if (Bn) { 3611a31a438cSHong Zhang /* off-diagonal part of mat */ 3612a31a438cSHong Zhang if (j == garray[k]) { 36138d2139bdSHong Zhang idx[count] = j; 3614a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3615a31a438cSHong Zhang } else if (j > garray[k]) { 3616a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3617a31a438cSHong Zhang if (j == garray[k]) { 3618a31a438cSHong Zhang idx[count] = j; 3619a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36208d2139bdSHong Zhang } 36218d2139bdSHong Zhang } 36228d2139bdSHong Zhang } 36238d2139bdSHong Zhang } 36249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36258d2139bdSHong Zhang 36269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36279566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36289566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3629b6d9b4e0SHong Zhang 36309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3631a31a438cSHong Zhang } 36328b3fa1f7SHong Zhang 36333b00a383SHong Zhang /* (3) Create sequential Msub */ 36349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3635d5761cdaSHong Zhang } 36368d2139bdSHong Zhang 36379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 363998b658c4SHong Zhang ii = aij->i; 36409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3641a0ff6018SBarry Smith 3642a0ff6018SBarry Smith /* 3643a0ff6018SBarry Smith m - number of local rows 3644a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3645a0ff6018SBarry Smith rstart - first row in new global matrix generated 3646a0ff6018SBarry Smith */ 36479566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364898b658c4SHong Zhang 36493b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36503b00a383SHong Zhang /* (4) Create parallel newmat */ 365198b658c4SHong Zhang PetscMPIInt rank, size; 3652bcae8d28SHong Zhang PetscInt csize; 365398b658c4SHong Zhang 36549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 365600e6dbe6SBarry Smith 3657a0ff6018SBarry Smith /* 365800e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365900e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3660a0ff6018SBarry Smith */ 366100e6dbe6SBarry Smith 366200e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36639566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36646a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36659566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3666a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3667e2c4fddaSBarry Smith nlocal = m; 36686a6a5d1dSBarry Smith } else { 3669a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3670ab50ec6bSBarry Smith } 3671ab50ec6bSBarry Smith } else { 36726a6a5d1dSBarry Smith nlocal = csize; 36736a6a5d1dSBarry Smith } 36749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 367500e6dbe6SBarry Smith rstart = rend - nlocal; 3676aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367700e6dbe6SBarry Smith 367800e6dbe6SBarry Smith /* next, compute all the lengths */ 367998b658c4SHong Zhang jj = aij->j; 36809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 368100e6dbe6SBarry Smith olens = dlens + m; 368200e6dbe6SBarry Smith for (i = 0; i < m; i++) { 368300e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 368400e6dbe6SBarry Smith olen = 0; 368500e6dbe6SBarry Smith dlen = 0; 368600e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368715b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368800e6dbe6SBarry Smith else dlen++; 368900e6dbe6SBarry Smith jj++; 369000e6dbe6SBarry Smith } 369100e6dbe6SBarry Smith olens[i] = olen; 369200e6dbe6SBarry Smith dlens[i] = dlen; 369300e6dbe6SBarry Smith } 3694b6d9b4e0SHong Zhang 36959566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36969566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369798b658c4SHong Zhang 36989566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37019566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37029566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37039566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3704d5761cdaSHong Zhang 3705d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3706a0ff6018SBarry Smith M = *newmat; 37079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370808401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37099566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3710c48de900SBarry Smith /* 3711c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3712c48de900SBarry Smith rather than the slower MatSetValues(). 3713c48de900SBarry Smith */ 3714c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3715c48de900SBarry Smith M->assembled = PETSC_FALSE; 3716a0ff6018SBarry Smith } 3717548ecf4dSHong Zhang 37183b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37209566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 372198b658c4SHong Zhang 372298b658c4SHong Zhang jj = aij->j; 37239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3724a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3725a0ff6018SBarry Smith row = rstart + i; 372600e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372715b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37289566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37299371c9d4SSatish Balay jj += nz; 37309371c9d4SSatish Balay aa += nz; 3731a0ff6018SBarry Smith } 37329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3734a0ff6018SBarry Smith 37359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3737fee21e36SBarry Smith 37389566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373998b658c4SHong Zhang 374098b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3741fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37423b00a383SHong Zhang *newmat = M; 3743f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 374598b658c4SHong Zhang 3746f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374898b658c4SHong Zhang 3749f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3751bcae8d28SHong Zhang 3752bcae8d28SHong Zhang if (iscol_local) { 3753f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3755bcae8d28SHong Zhang } 375698b658c4SHong Zhang } 37573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3758a0ff6018SBarry Smith } 3759273d9f13SBarry Smith 3760df40acb1SHong Zhang /* 3761df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3762df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3763df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3764df40acb1SHong Zhang 376511a5261eSBarry Smith This requires a sequential iscol with all indices. 3766df40acb1SHong Zhang */ 3767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3768d71ae5a4SJacob Faibussowitsch { 3769df40acb1SHong Zhang PetscMPIInt rank, size; 3770df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3771df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3772df40acb1SHong Zhang Mat M, Mreuse; 377398b658c4SHong Zhang MatScalar *aa, *vwork; 3774df40acb1SHong Zhang MPI_Comm comm; 3775df40acb1SHong Zhang Mat_SeqAIJ *aij; 37760b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3777df40acb1SHong Zhang 3778df40acb1SHong Zhang PetscFunctionBegin; 37799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3782df40acb1SHong Zhang 37830b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37849566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37860b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3787462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37880b27a90eSHong Zhang 3789df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 379128b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3793df40acb1SHong Zhang } else { 37949566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3795df40acb1SHong Zhang } 3796df40acb1SHong Zhang 3797df40acb1SHong Zhang /* 3798df40acb1SHong Zhang m - number of local rows 3799df40acb1SHong Zhang n - number of columns (same on all processors) 3800df40acb1SHong Zhang rstart - first row in new global matrix generated 3801df40acb1SHong Zhang */ 38029566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38039566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3804df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 380557508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3806df40acb1SHong Zhang ii = aij->i; 3807df40acb1SHong Zhang jj = aij->j; 3808df40acb1SHong Zhang 3809df40acb1SHong Zhang /* 3810df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3811df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3812df40acb1SHong Zhang */ 3813df40acb1SHong Zhang 3814df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3815df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38169566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3817df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3818df40acb1SHong Zhang nlocal = m; 3819df40acb1SHong Zhang } else { 3820df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3821df40acb1SHong Zhang } 3822df40acb1SHong Zhang } else { 3823df40acb1SHong Zhang nlocal = csize; 3824df40acb1SHong Zhang } 38259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3826df40acb1SHong Zhang rstart = rend - nlocal; 3827aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3828df40acb1SHong Zhang 3829df40acb1SHong Zhang /* next, compute all the lengths */ 38309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3831df40acb1SHong Zhang olens = dlens + m; 3832df40acb1SHong Zhang for (i = 0; i < m; i++) { 3833df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3834df40acb1SHong Zhang olen = 0; 3835df40acb1SHong Zhang dlen = 0; 3836df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3837df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3838df40acb1SHong Zhang else dlen++; 3839df40acb1SHong Zhang jj++; 3840df40acb1SHong Zhang } 3841df40acb1SHong Zhang olens[i] = olen; 3842df40acb1SHong Zhang dlens[i] = dlen; 3843df40acb1SHong Zhang } 38449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38469566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38479566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38489566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38499566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3850df40acb1SHong Zhang } else { 3851df40acb1SHong Zhang PetscInt ml, nl; 3852df40acb1SHong Zhang 3853df40acb1SHong Zhang M = *newmat; 38549566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 385508401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38569566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3857df40acb1SHong Zhang /* 3858df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3859df40acb1SHong Zhang rather than the slower MatSetValues(). 3860df40acb1SHong Zhang */ 3861df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3862df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3863df40acb1SHong Zhang } 38649566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 386557508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3866df40acb1SHong Zhang ii = aij->i; 3867df40acb1SHong Zhang jj = aij->j; 38682e5835c6SStefano Zampini 38692e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3871df40acb1SHong Zhang for (i = 0; i < m; i++) { 3872df40acb1SHong Zhang row = rstart + i; 3873df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38749371c9d4SSatish Balay cwork = jj; 38758e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38769371c9d4SSatish Balay vwork = aa; 38778e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38789566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3879df40acb1SHong Zhang } 38809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3881df40acb1SHong Zhang 38829566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38839566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3884df40acb1SHong Zhang *newmat = M; 3885df40acb1SHong Zhang 3886df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3887df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38889566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3890df40acb1SHong Zhang } 38913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3892df40acb1SHong Zhang } 3893df40acb1SHong Zhang 3894ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3895d71ae5a4SJacob Faibussowitsch { 38966a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38979f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3898ccd8e176SBarry Smith const PetscInt *JJ; 3899eeb24464SBarry Smith PetscBool nooffprocentries; 39006a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3901ccd8e176SBarry Smith 3902ccd8e176SBarry Smith PetscFunctionBegin; 39039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3905d0f46423SBarry Smith m = B->rmap->n; 3906d0f46423SBarry Smith cstart = B->cmap->rstart; 3907d0f46423SBarry Smith cend = B->cmap->rend; 3908d0f46423SBarry Smith rstart = B->rmap->rstart; 39099f0612e4SBarry Smith irstart = Ii[0]; 3910899cda47SBarry Smith 39119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3912ccd8e176SBarry Smith 391376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39148f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3915ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39169f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 391708401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391808401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391908401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3920ecc77c7aSBarry Smith } 392176bd3646SJed Brown } 3922ecc77c7aSBarry Smith 39238f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3924b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39259f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3926ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3927ccd8e176SBarry Smith d = 0; 39280daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39290daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3930ccd8e176SBarry Smith } 3931ccd8e176SBarry Smith d_nnz[i] = d; 3932ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3933ccd8e176SBarry Smith } 39349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39359566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3936ccd8e176SBarry Smith 39378f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3938ccd8e176SBarry Smith ii = i + rstart; 39399f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3940ccd8e176SBarry Smith } 3941eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3942eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3945eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3946ccd8e176SBarry Smith 39476a3d2595SBarry Smith /* count number of entries below block diagonal */ 39486a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39496a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39506a3d2595SBarry Smith Aij->ld = ld; 39516a3d2595SBarry Smith for (i = 0; i < m; i++) { 39526a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39536a3d2595SBarry Smith j = 0; 3954ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39556a3d2595SBarry Smith ld[i] = j; 3956720a2405SPierre Jolivet if (J) J += nnz; 39576a3d2595SBarry Smith } 39586a3d2595SBarry Smith 39599566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3961ccd8e176SBarry Smith } 3962ccd8e176SBarry Smith 39631eea217eSSatish Balay /*@ 396411a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3965ccd8e176SBarry Smith (the default parallel PETSc format). 3966ccd8e176SBarry Smith 3967d083f849SBarry Smith Collective 3968ccd8e176SBarry Smith 3969ccd8e176SBarry Smith Input Parameters: 3970a1661176SMatthew Knepley + B - the matrix 3971d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3972d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3973ccd8e176SBarry Smith - v - optional values in the matrix 3974ccd8e176SBarry Smith 3975ccd8e176SBarry Smith Level: developer 3976ccd8e176SBarry Smith 397712251496SSatish Balay Notes: 39782ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39792ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 398011a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 398112251496SSatish Balay 39822ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 398312251496SSatish Balay 3984a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3985a4bd8bc0SBarry Smith 3986a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3987a4bd8bc0SBarry Smith 3988a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3989a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3990a4bd8bc0SBarry Smith 399112251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 399212251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3993c5e4d11fSDmitry Karpeev as shown 399427430b45SBarry Smith .vb 399527430b45SBarry Smith 1 0 0 399627430b45SBarry Smith 2 0 3 P0 399727430b45SBarry Smith ------- 399827430b45SBarry Smith 4 5 6 P1 399927430b45SBarry Smith 400027430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 400127430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 400227430b45SBarry Smith j = {0,0,2} [size = 3] 400327430b45SBarry Smith v = {1,2,3} [size = 3] 400427430b45SBarry Smith 400527430b45SBarry Smith Process1 [P1] rows_owned=[2] 400627430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400727430b45SBarry Smith j = {0,1,2} [size = 3] 400827430b45SBarry Smith v = {4,5,6} [size = 3] 400927430b45SBarry Smith .ve 401012251496SSatish Balay 4011fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4012a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4013ccd8e176SBarry Smith @*/ 4014d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4015d71ae5a4SJacob Faibussowitsch { 4016ccd8e176SBarry Smith PetscFunctionBegin; 4017cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4019ccd8e176SBarry Smith } 4020ccd8e176SBarry Smith 40215d83a8b1SBarry Smith /*@ 402211a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4023273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4024273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 402520f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4026273d9f13SBarry Smith 4027d083f849SBarry Smith Collective 4028273d9f13SBarry Smith 4029273d9f13SBarry Smith Input Parameters: 40301c4f3114SJed Brown + B - the matrix 4031273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4032273d9f13SBarry Smith (same value is used for all local rows) 4033273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4034273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40352ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4036273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40373287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40383287b5eaSJed Brown the diagonal entry even if it is zero. 4039273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4040273d9f13SBarry Smith submatrix (same value is used for all local rows). 4041273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4042273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40432ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4044273d9f13SBarry Smith structure. The size of this array is equal to the number 4045273d9f13SBarry Smith of local rows, i.e 'm'. 4046273d9f13SBarry Smith 40472920cce0SJacob Faibussowitsch Example Usage: 404827430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404927430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 405027430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 405127430b45SBarry Smith as follows 405227430b45SBarry Smith 405327430b45SBarry Smith .vb 405427430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 405527430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405627430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405727430b45SBarry Smith ------------------------------------- 405827430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405927430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 406027430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 406127430b45SBarry Smith ------------------------------------- 406227430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 406327430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 406427430b45SBarry Smith .ve 406527430b45SBarry Smith 406627430b45SBarry Smith This can be represented as a collection of submatrices as 406727430b45SBarry Smith .vb 406827430b45SBarry Smith A B C 406927430b45SBarry Smith D E F 407027430b45SBarry Smith G H I 407127430b45SBarry Smith .ve 407227430b45SBarry Smith 407327430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 407427430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 407527430b45SBarry Smith 407627430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407727430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407827430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407927430b45SBarry Smith 408027430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 408127430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 408227430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 408327430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 408427430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40855163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 408627430b45SBarry Smith 408720f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40885163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40895163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40905163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40915163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 409220f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 409327430b45SBarry Smith .vb 409427430b45SBarry Smith proc0 dnz = 2, o_nz = 2 409527430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409627430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409727430b45SBarry Smith .ve 409820f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409927430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 410027430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 410127430b45SBarry Smith 34 values. 410227430b45SBarry Smith 410320f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 410427430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 410520f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410627430b45SBarry Smith .vb 410727430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410827430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410927430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 411027430b45SBarry Smith .ve 411127430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 411227430b45SBarry Smith hence pre-allocation is perfect. 411327430b45SBarry Smith 411427430b45SBarry Smith Level: intermediate 411527430b45SBarry Smith 411627430b45SBarry Smith Notes: 411749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411849a6f317SBarry Smith 411927430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41200598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4121651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4122273d9f13SBarry Smith 4123273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4124273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4125273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4126273d9f13SBarry Smith 4127273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4128a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4129a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4130a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4131a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4132a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4133a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4134a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4135a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4136273d9f13SBarry Smith 41372ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4138273d9f13SBarry Smith 413927430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4140aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 414127430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4142aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4143aa95bbe8SBarry Smith 41441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4145a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4146273d9f13SBarry Smith @*/ 4147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4148d71ae5a4SJacob Faibussowitsch { 4149273d9f13SBarry Smith PetscFunctionBegin; 41506ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41516ba663aaSJed Brown PetscValidType(B, 1); 4152cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4154273d9f13SBarry Smith } 4155273d9f13SBarry Smith 415658d36128SBarry Smith /*@ 415711a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41588f8f2f0dSBarry Smith CSR format for the local rows. 41592fb0ec9aSBarry Smith 4160d083f849SBarry Smith Collective 41612fb0ec9aSBarry Smith 41622fb0ec9aSBarry Smith Input Parameters: 41632fb0ec9aSBarry Smith + comm - MPI communicator 416411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41652fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4166d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4167d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4168d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4169d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41705693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41715693b835SJunchao Zhang . j - global column indices 4172f1f2ae84SBarry Smith - a - optional matrix values 41732fb0ec9aSBarry Smith 41742fb0ec9aSBarry Smith Output Parameter: 41752fb0ec9aSBarry Smith . mat - the matrix 417603bfb495SBarry Smith 41772fb0ec9aSBarry Smith Level: intermediate 41782fb0ec9aSBarry Smith 41792fb0ec9aSBarry Smith Notes: 41802ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4181d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4182d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41832fb0ec9aSBarry Smith 41842ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 418512251496SSatish Balay 41865693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4187a4bd8bc0SBarry Smith 41885693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4189a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4190a4bd8bc0SBarry Smith 419112251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4192d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4193c5e4d11fSDmitry Karpeev as shown 41942ef1f0ffSBarry Smith .vb 41952ef1f0ffSBarry Smith 1 0 0 41962ef1f0ffSBarry Smith 2 0 3 P0 41972ef1f0ffSBarry Smith ------- 41982ef1f0ffSBarry Smith 4 5 6 P1 41998f8f2f0dSBarry Smith 42002ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42012ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42022ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42032ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42042fb0ec9aSBarry Smith 42052ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42062ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42072ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42082ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42092ef1f0ffSBarry Smith .ve 42102ef1f0ffSBarry Smith 4211d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42125693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42132fb0ec9aSBarry Smith @*/ 4214d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4215d71ae5a4SJacob Faibussowitsch { 42162fb0ec9aSBarry Smith PetscFunctionBegin; 421708401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421808401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42199566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42219566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42229566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42239566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42252fb0ec9aSBarry Smith } 42262fb0ec9aSBarry Smith 42278f8f2f0dSBarry Smith /*@ 422811a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42292ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42302ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42316a3d2595SBarry Smith 42326a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42338f8f2f0dSBarry Smith 42348f8f2f0dSBarry Smith Collective 42358f8f2f0dSBarry Smith 42368f8f2f0dSBarry Smith Input Parameters: 42378f8f2f0dSBarry Smith + mat - the matrix 423811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42398f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 424011a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42418f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 424211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 424311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42448f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42458f8f2f0dSBarry Smith . J - column indices 42468f8f2f0dSBarry Smith - v - matrix values 42478f8f2f0dSBarry Smith 42482ef1f0ffSBarry Smith Level: deprecated 42498f8f2f0dSBarry Smith 42501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4251a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42528f8f2f0dSBarry Smith @*/ 4253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4254d71ae5a4SJacob Faibussowitsch { 42556a3d2595SBarry Smith PetscInt nnz, i; 42568f8f2f0dSBarry Smith PetscBool nooffprocentries; 42578f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4258fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4259fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42608f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42616a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42626a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42638f8f2f0dSBarry Smith 42648f8f2f0dSBarry Smith PetscFunctionBegin; 4265aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426608401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426708401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426808401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42698f8f2f0dSBarry Smith 42709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42728f8f2f0dSBarry Smith 42738f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42744c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42754c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42764c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42774c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42784c17f1ccSBarry Smith } 42794c17f1ccSBarry Smith } 42808f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42818f8f2f0dSBarry Smith Iii = Ii[i]; 42828f8f2f0dSBarry Smith ldi = ld[i]; 42838f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42878f8f2f0dSBarry Smith ad += md; 42888f8f2f0dSBarry Smith ao += nnz - md; 42898f8f2f0dSBarry Smith } 42908f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42918f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42949566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42969566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42979566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42989566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42998f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43018f8f2f0dSBarry Smith } 43028f8f2f0dSBarry Smith 43036a3d2595SBarry Smith /*@ 430411a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43056a3d2595SBarry Smith 43066a3d2595SBarry Smith Collective 43076a3d2595SBarry Smith 43086a3d2595SBarry Smith Input Parameters: 43096a3d2595SBarry Smith + mat - the matrix 43106a3d2595SBarry Smith - v - matrix values, stored by row 43116a3d2595SBarry Smith 43126a3d2595SBarry Smith Level: intermediate 43136a3d2595SBarry Smith 4314a4bd8bc0SBarry Smith Notes: 43156a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43166a3d2595SBarry Smith 4317a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4318a4bd8bc0SBarry Smith 43191cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4320a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43216a3d2595SBarry Smith @*/ 4322d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4323d71ae5a4SJacob Faibussowitsch { 43246a3d2595SBarry Smith PetscInt nnz, i, m; 43256a3d2595SBarry Smith PetscBool nooffprocentries; 43266a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43276a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43286a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43296a3d2595SBarry Smith PetscScalar *ad, *ao; 43306a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43316a3d2595SBarry Smith PetscInt ldi, Iii, md; 43326a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43336a3d2595SBarry Smith 43346a3d2595SBarry Smith PetscFunctionBegin; 43356a3d2595SBarry Smith m = mat->rmap->n; 43366a3d2595SBarry Smith 43376a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43386a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43396a3d2595SBarry Smith Iii = 0; 43406a3d2595SBarry Smith for (i = 0; i < m; i++) { 43416a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43426a3d2595SBarry Smith ldi = ld[i]; 43436a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43446a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43456a3d2595SBarry Smith ad += md; 4346810441c8SPierre Jolivet if (ao) { 4347810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4348810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43496a3d2595SBarry Smith ao += nnz - md; 4350810441c8SPierre Jolivet } 43516a3d2595SBarry Smith Iii += nnz; 43526a3d2595SBarry Smith } 43536a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43546a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43556a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43566a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43576a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43586a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43596a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43606a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43616a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43626a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43646a3d2595SBarry Smith } 43656a3d2595SBarry Smith 43665d83a8b1SBarry Smith /*@ 436711a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4368273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4369273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43702ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4371273d9f13SBarry Smith 4372d083f849SBarry Smith Collective 4373273d9f13SBarry Smith 4374273d9f13SBarry Smith Input Parameters: 4375273d9f13SBarry Smith + comm - MPI communicator 437611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4377273d9f13SBarry Smith This value should be the same as the local size used in creating the 4378273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4379273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 438045f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4381273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 438211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 438311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4384273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4385273d9f13SBarry Smith (same value is used for all local rows) 4386273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4387273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43882ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4389273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4390273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4391273d9f13SBarry Smith submatrix (same value is used for all local rows). 4392273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4393273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43942ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4395273d9f13SBarry Smith structure. The size of this array is equal to the number 4396273d9f13SBarry Smith of local rows, i.e 'm'. 4397273d9f13SBarry Smith 4398273d9f13SBarry Smith Output Parameter: 4399273d9f13SBarry Smith . A - the matrix 4400273d9f13SBarry Smith 440127430b45SBarry Smith Options Database Keys: 440227430b45SBarry Smith + -mat_no_inode - Do not use inodes 440327430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 440427430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4405727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4406727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440727430b45SBarry Smith 44082ef1f0ffSBarry Smith Level: intermediate 44092ef1f0ffSBarry Smith 441027430b45SBarry Smith Notes: 441177433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4412f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 441311a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4414175b88e8SBarry Smith 441549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441649a6f317SBarry Smith 44172ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44182ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4419273d9f13SBarry Smith storage requirements for this matrix. 4420273d9f13SBarry Smith 442111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4422273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4423273d9f13SBarry Smith that argument. 4424273d9f13SBarry Smith 4425727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4426727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4427727bdf9bSBarry Smith 4428273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4429273d9f13SBarry Smith (possibly both). 4430273d9f13SBarry Smith 443133a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4432727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4433727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4434727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 443533a7c187SSatish Balay values corresponding to [m x N] submatrix. 4436273d9f13SBarry Smith 443733a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443833a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4439df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 444033a7c187SSatish Balay 444133a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 444233a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 444333a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 444433a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 444533a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 444633a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44470b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44480b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 444933a7c187SSatish Balay 445033a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 445133a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 445233a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 445333a7c187SSatish Balay local matrix (a rectangular submatrix). 4454273d9f13SBarry Smith 44552ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4456273d9f13SBarry Smith 445797d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44582ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4459da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4460da57b5cdSKarl Rupp .vb 44612ef1f0ffSBarry Smith MatCreate(..., &A); 44622ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44632ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44642ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4465da57b5cdSKarl Rupp .ve 446697d05335SKris Buschelman 4467273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4468273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4469273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4470273d9f13SBarry Smith 44712920cce0SJacob Faibussowitsch Example Usage: 4472273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4473273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4474273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4475efc377ccSKarl Rupp as follows 4476273d9f13SBarry Smith 4477273d9f13SBarry Smith .vb 4478273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4479273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4480273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4481273d9f13SBarry Smith ------------------------------------- 4482273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4483273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4484273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4485273d9f13SBarry Smith ------------------------------------- 4486273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4487273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4488273d9f13SBarry Smith .ve 4489273d9f13SBarry Smith 4490da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4491273d9f13SBarry Smith 4492273d9f13SBarry Smith .vb 4493273d9f13SBarry Smith A B C 4494273d9f13SBarry Smith D E F 4495273d9f13SBarry Smith G H I 4496273d9f13SBarry Smith .ve 4497273d9f13SBarry Smith 4498273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4499273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4500273d9f13SBarry Smith 4501273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4502273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4503273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4504273d9f13SBarry Smith 4505273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4506273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4507273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4508273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450927430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45105163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4511273d9f13SBarry Smith 45122ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45135163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45145163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45155163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45165163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45172ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4518273d9f13SBarry Smith .vb 451927430b45SBarry Smith proc0 dnz = 2, o_nz = 2 452027430b45SBarry Smith proc1 dnz = 3, o_nz = 2 452127430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4522273d9f13SBarry Smith .ve 45232ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4524273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4525273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4526273d9f13SBarry Smith 34 values. 4527273d9f13SBarry Smith 45282ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4529a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4530da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4531273d9f13SBarry Smith .vb 453227430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 453327430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 453427430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4535273d9f13SBarry Smith .ve 4536273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4537273d9f13SBarry Smith hence pre-allocation is perfect. 4538273d9f13SBarry Smith 45391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4540727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4541727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4542273d9f13SBarry Smith @*/ 4543d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4544d71ae5a4SJacob Faibussowitsch { 4545b1d57f15SBarry Smith PetscMPIInt size; 4546273d9f13SBarry Smith 4547273d9f13SBarry Smith PetscFunctionBegin; 45489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4551273d9f13SBarry Smith if (size > 1) { 45529566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4554273d9f13SBarry Smith } else { 45559566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4557273d9f13SBarry Smith } 45583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4559273d9f13SBarry Smith } 4560195d93cdSBarry Smith 45610b98dbb4SBarry Smith /*MC 45620b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45630b98dbb4SBarry Smith 45640b98dbb4SBarry Smith Synopsis: 45650b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45660b98dbb4SBarry Smith 45670b98dbb4SBarry Smith Not Collective 45680b98dbb4SBarry Smith 45690b98dbb4SBarry Smith Input Parameter: 45700b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45710b98dbb4SBarry Smith 45720b98dbb4SBarry Smith Output Parameters: 45730b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45744cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45752ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45760b98dbb4SBarry Smith - ierr - error code 45770b98dbb4SBarry Smith 45780b98dbb4SBarry Smith Level: advanced 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith Note: 45810b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45820b98dbb4SBarry Smith 45831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45840b98dbb4SBarry Smith M*/ 45850b98dbb4SBarry Smith 45860b98dbb4SBarry Smith /*MC 45870b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45880b98dbb4SBarry Smith 45890b98dbb4SBarry Smith Synopsis: 45900b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45910b98dbb4SBarry Smith 45920b98dbb4SBarry Smith Not Collective 45930b98dbb4SBarry Smith 45940b98dbb4SBarry Smith Input Parameters: 45950b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45960b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45974cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45982ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45990b98dbb4SBarry Smith - ierr - error code 46000b98dbb4SBarry Smith 46010b98dbb4SBarry Smith Level: advanced 46020b98dbb4SBarry Smith 46031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 46040b98dbb4SBarry Smith M*/ 46050b98dbb4SBarry Smith 4606127ca0efSMatthew Knepley /*@C 46070ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4608127ca0efSMatthew Knepley 46092ef1f0ffSBarry Smith Not Collective 4610127ca0efSMatthew Knepley 4611127ca0efSMatthew Knepley Input Parameter: 461211a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4613127ca0efSMatthew Knepley 4614127ca0efSMatthew Knepley Output Parameters: 461511a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 461611a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46172ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4618127ca0efSMatthew Knepley 46190ab4885dSBarry Smith Level: intermediate 46200ab4885dSBarry Smith 462111a5261eSBarry Smith Note: 46222ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46232ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46242ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4625127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4626127ca0efSMatthew Knepley 4627fe59aa6dSJacob Faibussowitsch Fortran Notes: 46280ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4629127ca0efSMatthew Knepley 4630fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4631127ca0efSMatthew Knepley @*/ 4632d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4633d71ae5a4SJacob Faibussowitsch { 4634195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 463504cf37c7SBarry Smith PetscBool flg; 4636b1d57f15SBarry Smith 4637195d93cdSBarry Smith PetscFunctionBegin; 46389566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463928b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 464021e72a00SBarry Smith if (Ad) *Ad = a->A; 464121e72a00SBarry Smith if (Ao) *Ao = a->B; 464221e72a00SBarry Smith if (colmap) *colmap = a->garray; 46433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4644195d93cdSBarry Smith } 4645a2243be0SBarry Smith 4646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4647d71ae5a4SJacob Faibussowitsch { 4648110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46499b8102ccSHong Zhang PetscInt *indx; 4650110bb6e1SHong Zhang PetscScalar *values; 4651421ddf4dSJunchao Zhang MatType rootType; 46529b8102ccSHong Zhang 46539b8102ccSHong Zhang PetscFunctionBegin; 46549566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4655110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4656110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4657110bb6e1SHong Zhang 465848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4659a22543b6SHong Zhang /* Check sum(n) = N */ 4660462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 466108401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4662a22543b6SHong Zhang 46639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46649b8102ccSHong Zhang rstart -= m; 46659b8102ccSHong Zhang 4666d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46679b8102ccSHong Zhang for (i = 0; i < m; i++) { 46689566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46699566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46709566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46719b8102ccSHong Zhang } 46729b8102ccSHong Zhang 46739566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46759566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46779566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46789566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4681d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46829566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46839b8102ccSHong Zhang } 46849b8102ccSHong Zhang 4685110bb6e1SHong Zhang /* numeric phase */ 46869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46879b8102ccSHong Zhang for (i = 0; i < m; i++) { 46889566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46899b8102ccSHong Zhang Ii = i + rstart; 46909566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46919566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46929b8102ccSHong Zhang } 46939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4696c5d6d63eSBarry Smith } 4697c5d6d63eSBarry Smith 4698d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4699d71ae5a4SJacob Faibussowitsch { 47006718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 470151a7d1a8SHong Zhang 470251a7d1a8SHong Zhang PetscFunctionBegin; 47033ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47109566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47119566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47129566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47139566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47149566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47159566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47169566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47179566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471951a7d1a8SHong Zhang } 472051a7d1a8SHong Zhang 4721c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4722c6db04a5SJed Brown #include <petscbt.h> 47234ebed01fSBarry Smith 4724d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4725d71ae5a4SJacob Faibussowitsch { 4726ce94432eSBarry Smith MPI_Comm comm; 472755d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4728b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47296497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47306497c311SBarry Smith PetscMPIInt proc, k; 4731b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47326497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4733b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 473455d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 473555d1abb9SHong Zhang MPI_Status *status; 4736fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4737dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473855d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4739776b82aeSLisandro Dalcin PetscContainer container; 474055d1abb9SHong Zhang 474155d1abb9SHong Zhang PetscFunctionBegin; 47429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47439566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47443c2c1871SHong Zhang 47459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474755d1abb9SHong Zhang 47489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474928b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47509566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4752fff043a9SJunchao Zhang aa = a_a; 4753bf0cc555SLisandro Dalcin 475455d1abb9SHong Zhang bi = merge->bi; 475555d1abb9SHong Zhang bj = merge->bj; 475655d1abb9SHong Zhang buf_ri = merge->buf_ri; 475755d1abb9SHong Zhang buf_rj = merge->buf_rj; 475855d1abb9SHong Zhang 47599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47607a2fc3feSBarry Smith owners = merge->rowmap->range; 476155d1abb9SHong Zhang len_s = merge->len_s; 476255d1abb9SHong Zhang 476355d1abb9SHong Zhang /* send and recv matrix values */ 47649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47659566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 476655d1abb9SHong Zhang 47679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476855d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476955d1abb9SHong Zhang if (!len_s[proc]) continue; 477055d1abb9SHong Zhang i = owners[proc]; 47716497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 477255d1abb9SHong Zhang k++; 477355d1abb9SHong Zhang } 477455d1abb9SHong Zhang 47759566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47769566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47779566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477855d1abb9SHong Zhang 47799566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47809566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 478155d1abb9SHong Zhang 478255d1abb9SHong Zhang /* insert mat values of mpimat */ 47839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47849566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 478555d1abb9SHong Zhang 478655d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478755d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4788f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 478955d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4790a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 479155d1abb9SHong Zhang } 479255d1abb9SHong Zhang 479355d1abb9SHong Zhang /* set values of ba */ 47947a2fc3feSBarry Smith m = merge->rowmap->n; 479555d1abb9SHong Zhang for (i = 0; i < m; i++) { 479655d1abb9SHong Zhang arow = owners[rank] + i; 479755d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479855d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47999566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 480055d1abb9SHong Zhang 480155d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 480255d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 480355d1abb9SHong Zhang aj = a->j + ai[arow]; 4804fff043a9SJunchao Zhang aa = a_a + ai[arow]; 480555d1abb9SHong Zhang nextaj = 0; 480655d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480755d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480855d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480955d1abb9SHong Zhang } 481055d1abb9SHong Zhang } 481155d1abb9SHong Zhang 481255d1abb9SHong Zhang /* add received vals into ba */ 481355d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 481455d1abb9SHong Zhang /* i-th row */ 481555d1abb9SHong Zhang if (i == *nextrow[k]) { 481655d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4817f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4818f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 481955d1abb9SHong Zhang nextaj = 0; 482055d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 482155d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 482255d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 482355d1abb9SHong Zhang } 482455d1abb9SHong Zhang } 48259371c9d4SSatish Balay nextrow[k]++; 48269371c9d4SSatish Balay nextai[k]++; 482755d1abb9SHong Zhang } 482855d1abb9SHong Zhang } 48299566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 483055d1abb9SHong Zhang } 48319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 483455d1abb9SHong Zhang 48359566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48369566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48379566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48389566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 484155d1abb9SHong Zhang } 484238f152feSBarry Smith 4843d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4844d71ae5a4SJacob Faibussowitsch { 484555a3bba9SHong Zhang Mat B_mpi; 4846c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4847b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4848b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4849d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48506497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4851c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4852b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 485355d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 485458cb9c82SHong Zhang MPI_Status *status; 48550298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4856be0fcf8dSHong Zhang PetscBT lnkbt; 485751a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4858776b82aeSLisandro Dalcin PetscContainer container; 485902c68681SHong Zhang 4860e5f2cdd8SHong Zhang PetscFunctionBegin; 48619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48623c2c1871SHong Zhang 486338f152feSBarry Smith /* make sure it is a PETSc comm */ 48649566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486755d1abb9SHong Zhang 48689566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4870e5f2cdd8SHong Zhang 48716abd8857SHong Zhang /* determine row ownership */ 48729566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487955d1abb9SHong Zhang 48807a2fc3feSBarry Smith m = merge->rowmap->n; 48817a2fc3feSBarry Smith owners = merge->rowmap->range; 48826abd8857SHong Zhang 48836abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48843e06a4e6SHong Zhang len_s = merge->len_s; 488551a7d1a8SHong Zhang 48862257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4887c2234fe3SHong Zhang merge->nsend = 0; 48886497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48892257cef7SHong Zhang len_si[proc] = 0; 48903e06a4e6SHong Zhang if (proc == rank) { 48916abd8857SHong Zhang len_s[proc] = 0; 48923e06a4e6SHong Zhang } else { 48936497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48946497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48953e06a4e6SHong Zhang } 48963e06a4e6SHong Zhang if (len_s[proc]) { 4897c2234fe3SHong Zhang merge->nsend++; 48982257cef7SHong Zhang nrows = 0; 48992257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49002257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 49012257cef7SHong Zhang } 49026497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 49032257cef7SHong Zhang len += len_si[proc]; 4904409913e3SHong Zhang } 490558cb9c82SHong Zhang } 4906409913e3SHong Zhang 49072257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49089566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49099566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4910671beff6SHong Zhang 49113e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49129566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49139566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 491402c68681SHong Zhang 49153e06a4e6SHong Zhang /* post the Isend of j-structure */ 49169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49173e06a4e6SHong Zhang 49186497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4919409913e3SHong Zhang if (!len_s[proc]) continue; 492002c68681SHong Zhang i = owners[proc]; 49216497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 492251a7d1a8SHong Zhang k++; 492351a7d1a8SHong Zhang } 492451a7d1a8SHong Zhang 49253e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49269566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49279566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492802c68681SHong Zhang 492902c68681SHong Zhang /* send and recv i-structure */ 49309566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49319566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 493202c68681SHong Zhang 49339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49343e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49356497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 493602c68681SHong Zhang if (!len_s[proc]) continue; 49373e06a4e6SHong Zhang /* form outgoing message for i-structure: 49383e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49393e06a4e6SHong Zhang [1:nrows]: row index (global) 49403e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49413e06a4e6SHong Zhang */ 49422257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49433e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49443e06a4e6SHong Zhang buf_si[0] = nrows; 49453e06a4e6SHong Zhang buf_si_i[0] = 0; 49463e06a4e6SHong Zhang nrows = 0; 49473e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49483e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49493e06a4e6SHong Zhang if (anzi) { 49503e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49513e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49523e06a4e6SHong Zhang nrows++; 49533e06a4e6SHong Zhang } 49543e06a4e6SHong Zhang } 49556497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 495602c68681SHong Zhang k++; 49572257cef7SHong Zhang buf_si += len_si[proc]; 495802c68681SHong Zhang } 49592257cef7SHong Zhang 49609566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49619566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 496202c68681SHong Zhang 49639566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 496448a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49653e06a4e6SHong Zhang 49669566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49679566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49689566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49699566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49709566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49719566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49729566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 497358cb9c82SHong Zhang 4974bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 497558cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497758cb9c82SHong Zhang bi[0] = 0; 497858cb9c82SHong Zhang 4979be0fcf8dSHong Zhang /* create and initialize a linked list */ 4980be0fcf8dSHong Zhang nlnk = N + 1; 49819566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 498258cb9c82SHong Zhang 4983bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4984bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49859566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49862205254eSKarl Rupp 498758cb9c82SHong Zhang current_space = free_space; 498858cb9c82SHong Zhang 4989bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49909566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49911d79065fSBarry Smith 49923e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49932257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49943e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49953e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4996a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49973e06a4e6SHong Zhang } 49982257cef7SHong Zhang 4999d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 5000bcc1bcd5SHong Zhang len = 0; 500158cb9c82SHong Zhang for (i = 0; i < m; i++) { 500258cb9c82SHong Zhang bnzi = 0; 500358cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 500458cb9c82SHong Zhang arow = owners[rank] + i; 500558cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 500658cb9c82SHong Zhang aj = a->j + ai[arow]; 50079566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500858cb9c82SHong Zhang bnzi += nlnk; 500958cb9c82SHong Zhang /* add received col data into lnk */ 501051a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 501155d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50123e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50133e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50149566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50153e06a4e6SHong Zhang bnzi += nlnk; 50169371c9d4SSatish Balay nextrow[k]++; 50179371c9d4SSatish Balay nextai[k]++; 50183e06a4e6SHong Zhang } 501958cb9c82SHong Zhang } 5020bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 502158cb9c82SHong Zhang 502258cb9c82SHong Zhang /* if free space is not available, make more free space */ 502348a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 502458cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50259566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50269566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5027bcc1bcd5SHong Zhang 502858cb9c82SHong Zhang current_space->array += bnzi; 502958cb9c82SHong Zhang current_space->local_used += bnzi; 503058cb9c82SHong Zhang current_space->local_remaining -= bnzi; 503158cb9c82SHong Zhang 503258cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 503358cb9c82SHong Zhang } 5034bcc1bcd5SHong Zhang 50359566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5036bcc1bcd5SHong Zhang 50379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50389566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50399566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5040409913e3SHong Zhang 5041bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50429566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50439566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 504454b84b50SHong Zhang if (n == PETSC_DECIDE) { 50459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 504654b84b50SHong Zhang } else { 50479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504854b84b50SHong Zhang } 50499566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50509566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50519566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5052d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50539566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 505458cb9c82SHong Zhang 505590431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50566abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5057affca5deSHong Zhang merge->bi = bi; 5058affca5deSHong Zhang merge->bj = bj; 505902c68681SHong Zhang merge->buf_ri = buf_ri; 506002c68681SHong Zhang merge->buf_rj = buf_rj; 50610298fd71SBarry Smith merge->coi = NULL; 50620298fd71SBarry Smith merge->coj = NULL; 50630298fd71SBarry Smith merge->owners_co = NULL; 5064affca5deSHong Zhang 50659566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5066bf0cc555SLisandro Dalcin 5067affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50689566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50699566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50709566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50719566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50729566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5073affca5deSHong Zhang *mpimat = B_mpi; 507438f152feSBarry Smith 50759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5077e5f2cdd8SHong Zhang } 507825616d81SHong Zhang 5079cc4c1da9SBarry Smith /*@ 508011a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5081d4036a1aSHong Zhang matrices from each processor 5082d4036a1aSHong Zhang 5083d083f849SBarry Smith Collective 5084d4036a1aSHong Zhang 5085d4036a1aSHong Zhang Input Parameters: 5086d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5087d4036a1aSHong Zhang . seqmat - the input sequential matrices 508811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508911a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 509011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5091d4036a1aSHong Zhang 5092d4036a1aSHong Zhang Output Parameter: 5093d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5094d4036a1aSHong Zhang 5095d4036a1aSHong Zhang Level: advanced 5096d4036a1aSHong Zhang 509711a5261eSBarry Smith Note: 5098d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5099d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5100b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 51012ef1f0ffSBarry Smith 51021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5103d4036a1aSHong Zhang @*/ 5104d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5105d71ae5a4SJacob Faibussowitsch { 51067e63b356SHong Zhang PetscMPIInt size; 510755d1abb9SHong Zhang 510855d1abb9SHong Zhang PetscFunctionBegin; 51099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51107e63b356SHong Zhang if (size == 1) { 51119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51127e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51139566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51147e63b356SHong Zhang } else { 51159566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51167e63b356SHong Zhang } 51179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51197e63b356SHong Zhang } 51209566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 512148a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51229566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 512555d1abb9SHong Zhang } 51264ebed01fSBarry Smith 5127bc08b0f1SBarry Smith /*@ 51282920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51298a9c020eSBarry Smith 51308a9c020eSBarry Smith Not Collective 51318a9c020eSBarry Smith 51322fe279fdSBarry Smith Input Parameter: 513320f4b53cSBarry Smith . A - the matrix 51348a9c020eSBarry Smith 51358a9c020eSBarry Smith Output Parameter: 51368a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51378a9c020eSBarry Smith 51388a9c020eSBarry Smith Level: developer 51398a9c020eSBarry Smith 51408a9c020eSBarry Smith Notes: 51412920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51422920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51432920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51442920cce0SJacob Faibussowitsch 514511a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51468a9c020eSBarry Smith 51472920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51482920cce0SJacob Faibussowitsch 514911a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51508a9c020eSBarry Smith 51511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51528a9c020eSBarry Smith @*/ 5153d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5154d71ae5a4SJacob Faibussowitsch { 51558a9c020eSBarry Smith PetscBool mpi; 51568a9c020eSBarry Smith 51578a9c020eSBarry Smith PetscFunctionBegin; 51588a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51598a9c020eSBarry Smith if (mpi) { 51608a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51618a9c020eSBarry Smith } else { 51628a9c020eSBarry Smith *A_loc = A; 51638a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51648a9c020eSBarry Smith } 51653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51668a9c020eSBarry Smith } 51678a9c020eSBarry Smith 51688a9c020eSBarry Smith /*@ 51692920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 517025616d81SHong Zhang 517132fba14fSHong Zhang Not Collective 517225616d81SHong Zhang 517325616d81SHong Zhang Input Parameters: 517425616d81SHong Zhang + A - the matrix 517511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 517625616d81SHong Zhang 517725616d81SHong Zhang Output Parameter: 517825616d81SHong Zhang . A_loc - the local sequential matrix generated 517925616d81SHong Zhang 518025616d81SHong Zhang Level: developer 518125616d81SHong Zhang 518277c65a98SStefano Zampini Notes: 51832920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51842920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51852920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51862920cce0SJacob Faibussowitsch 518711a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51888a9c020eSBarry Smith 51892920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51902920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51912920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51922920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 519377c65a98SStefano Zampini 51941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 519525616d81SHong Zhang @*/ 5196d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5197d71ae5a4SJacob Faibussowitsch { 519801b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5199b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5200b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5201ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5202ce496241SStefano Zampini PetscScalar *ca, *cam; 520377c65a98SStefano Zampini PetscMPIInt size; 5204d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52055a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52068661ff28SBarry Smith PetscBool match; 520725616d81SHong Zhang 520825616d81SHong Zhang PetscFunctionBegin; 52099566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 521028b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 521277c65a98SStefano Zampini if (size == 1) { 521377c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 521577c65a98SStefano Zampini *A_loc = mpimat->A; 521677c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52179566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521877c65a98SStefano Zampini } 52193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522077c65a98SStefano Zampini } 522170a9ba44SHong Zhang 52229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5223f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5224f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52259371c9d4SSatish Balay ai = a->i; 52269371c9d4SSatish Balay aj = a->j; 52279371c9d4SSatish Balay bi = b->i; 52289371c9d4SSatish Balay bj = b->j; 52299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5231ce496241SStefano Zampini aa = aav; 5232ce496241SStefano Zampini ba = bav; 523301b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5235dea91ad1SHong Zhang ci[0] = 0; 5236ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5239dea91ad1SHong Zhang k = 0; 524001b7ae99SHong Zhang for (i = 0; i < am; i++) { 52415a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52425a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 524301b7ae99SHong Zhang /* off-diagonal portion of A */ 52445a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52455a7d977cSHong Zhang col = cmap[*bj]; 52465a7d977cSHong Zhang if (col >= cstart) break; 52479371c9d4SSatish Balay cj[k] = col; 52489371c9d4SSatish Balay bj++; 52495a7d977cSHong Zhang ca[k++] = *ba++; 52505a7d977cSHong Zhang } 52515a7d977cSHong Zhang /* diagonal portion of A */ 52525a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52535a7d977cSHong Zhang cj[k] = cstart + *aj++; 52545a7d977cSHong Zhang ca[k++] = *aa++; 52555a7d977cSHong Zhang } 52565a7d977cSHong Zhang /* off-diagonal portion of A */ 52575a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52585a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52595a7d977cSHong Zhang ca[k++] = *ba++; 52605a7d977cSHong Zhang } 526125616d81SHong Zhang } 5262dea91ad1SHong Zhang /* put together the new matrix */ 52639566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5264dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5265dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5266dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5267e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5268e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5269dea91ad1SHong Zhang mat->nonew = 0; 52705a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52715a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5272fff043a9SJunchao Zhang ci = mat->i; 5273fff043a9SJunchao Zhang cj = mat->j; 52749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52755a7d977cSHong Zhang for (i = 0; i < am; i++) { 52765a7d977cSHong Zhang /* off-diagonal portion of A */ 52775a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52785a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52795a7d977cSHong Zhang col = cmap[*bj]; 52805a7d977cSHong Zhang if (col >= cstart) break; 52819371c9d4SSatish Balay *cam++ = *ba++; 52829371c9d4SSatish Balay bj++; 52835a7d977cSHong Zhang } 52845a7d977cSHong Zhang /* diagonal portion of A */ 5285ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5286a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52875a7d977cSHong Zhang /* off-diagonal portion of A */ 5288f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52899371c9d4SSatish Balay *cam++ = *ba++; 52909371c9d4SSatish Balay bj++; 5291f33d1a9aSHong Zhang } 52925a7d977cSHong Zhang } 52939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 529498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52979566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529925616d81SHong Zhang } 530025616d81SHong Zhang 5301ed502f03SStefano Zampini /*@ 530211a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 53034cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5304ed502f03SStefano Zampini 5305ed502f03SStefano Zampini Not Collective 5306ed502f03SStefano Zampini 5307ed502f03SStefano Zampini Input Parameters: 5308ed502f03SStefano Zampini + A - the matrix 530911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5310ed502f03SStefano Zampini 5311d8d19677SJose E. Roman Output Parameters: 53122ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5313ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5314ed502f03SStefano Zampini 5315ed502f03SStefano Zampini Level: developer 5316ed502f03SStefano Zampini 531711a5261eSBarry Smith Note: 53182ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53194cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5320ed502f03SStefano Zampini 53211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5322ed502f03SStefano Zampini @*/ 5323d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5324d71ae5a4SJacob Faibussowitsch { 5325ed502f03SStefano Zampini Mat Ao, Ad; 5326ed502f03SStefano Zampini const PetscInt *cmap; 5327ed502f03SStefano Zampini PetscMPIInt size; 5328ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5329ed502f03SStefano Zampini 5330ed502f03SStefano Zampini PetscFunctionBegin; 53319566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5333ed502f03SStefano Zampini if (size == 1) { 5334ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53359566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5336ed502f03SStefano Zampini *A_loc = Ad; 5337ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53389566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5339ed502f03SStefano Zampini } 53409566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5342ed502f03SStefano Zampini } 53439566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5345ed502f03SStefano Zampini if (f) { 53469566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5347ed502f03SStefano Zampini } else { 5348ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5349ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5350ed502f03SStefano Zampini Mat_SeqAIJ *c; 5351ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5352ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5353ed502f03SStefano Zampini PetscInt *ci, *cj; 5354ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5355ed502f03SStefano Zampini PetscScalar *ca; 5356ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5357ed502f03SStefano Zampini 53589566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5362ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5363ed502f03SStefano Zampini PetscInt k; 53649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5367ed502f03SStefano Zampini ci[0] = 0; 5368ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5369ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5370ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5371ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5372ed502f03SStefano Zampini /* diagonal portion of A */ 5373ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5374ed502f03SStefano Zampini cj[k] = *aj++; 5375ed502f03SStefano Zampini ca[k] = *aa++; 5376ed502f03SStefano Zampini } 5377ed502f03SStefano Zampini /* off-diagonal portion of A */ 5378ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5379ed502f03SStefano Zampini cj[k] = dn + *bj++; 5380ed502f03SStefano Zampini ca[k] = *ba++; 5381ed502f03SStefano Zampini } 5382ed502f03SStefano Zampini } 5383ed502f03SStefano Zampini /* put together the new matrix */ 53849566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5385ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5386ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5387ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5388ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5389ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5390ed502f03SStefano Zampini c->nonew = 0; 53919566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5392ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5394ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5395ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5396ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5397ed502f03SStefano Zampini /* diagonal portion of A */ 5398ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5399ed502f03SStefano Zampini /* off-diagonal portion of A */ 5400ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5401ed502f03SStefano Zampini } 54029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 540398921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 54049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5406ed502f03SStefano Zampini if (glob) { 5407ed502f03SStefano Zampini PetscInt cst, *gidx; 5408ed502f03SStefano Zampini 54099566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5411ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5412ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54139566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5414ed502f03SStefano Zampini } 5415ed502f03SStefano Zampini } 54169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5418ed502f03SStefano Zampini } 5419ed502f03SStefano Zampini 542032fba14fSHong Zhang /*@C 542111a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 542232fba14fSHong Zhang 542332fba14fSHong Zhang Not Collective 542432fba14fSHong Zhang 542532fba14fSHong Zhang Input Parameters: 542632fba14fSHong Zhang + A - the matrix 542711a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542820f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542920f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 543032fba14fSHong Zhang 543132fba14fSHong Zhang Output Parameter: 543232fba14fSHong Zhang . A_loc - the local sequential matrix generated 543332fba14fSHong Zhang 543432fba14fSHong Zhang Level: developer 543532fba14fSHong Zhang 54361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543732fba14fSHong Zhang @*/ 5438d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5439d71ae5a4SJacob Faibussowitsch { 544032fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 544132fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 544232fba14fSHong Zhang IS isrowa, iscola; 544332fba14fSHong Zhang Mat *aloc; 54444a2b5492SBarry Smith PetscBool match; 544532fba14fSHong Zhang 544632fba14fSHong Zhang PetscFunctionBegin; 54479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544828b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54499566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 545032fba14fSHong Zhang if (!row) { 54519371c9d4SSatish Balay start = A->rmap->rstart; 54529371c9d4SSatish Balay end = A->rmap->rend; 54539566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 545432fba14fSHong Zhang } else { 545532fba14fSHong Zhang isrowa = *row; 545632fba14fSHong Zhang } 545732fba14fSHong Zhang if (!col) { 5458d0f46423SBarry Smith start = A->cmap->rstart; 545932fba14fSHong Zhang cmap = a->garray; 5460d0f46423SBarry Smith nzA = a->A->cmap->n; 5461d0f46423SBarry Smith nzB = a->B->cmap->n; 54629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 546332fba14fSHong Zhang ncols = 0; 546432fba14fSHong Zhang for (i = 0; i < nzB; i++) { 546532fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 546632fba14fSHong Zhang else break; 546732fba14fSHong Zhang } 546832fba14fSHong Zhang imark = i; 546932fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 547032fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 547232fba14fSHong Zhang } else { 547332fba14fSHong Zhang iscola = *col; 547432fba14fSHong Zhang } 547532fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547732fba14fSHong Zhang aloc[0] = *A_loc; 547832fba14fSHong Zhang } 54799566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5480109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54819566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5482109e0772SStefano Zampini } 548332fba14fSHong Zhang *A_loc = aloc[0]; 54849566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 548548a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 548648a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54879566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548932fba14fSHong Zhang } 549032fba14fSHong Zhang 54915c65b9ecSFande Kong /* 54925c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54935c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54945c65b9ecSFande Kong * on a global size. 54955c65b9ecSFande Kong * */ 5496ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5497d71ae5a4SJacob Faibussowitsch { 54985c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5499f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5500131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5501131c27b5Sprj- PetscMPIInt owner; 55025c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 55035c65b9ecSFande Kong const PetscInt *lrowindices; 55045c65b9ecSFande Kong PetscSF sf, osf; 55055c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55065c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55075c65b9ecSFande Kong MPI_Comm comm; 55085c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5509fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55105c65b9ecSFande Kong 55115c65b9ecSFande Kong PetscFunctionBegin; 55129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55135c65b9ecSFande Kong /* plocalsize is the number of roots 55145c65b9ecSFande Kong * nrows is the number of leaves 55155c65b9ecSFande Kong * */ 55169566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55179566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55189566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55205c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55215c65b9ecSFande Kong /* Find a remote index and an owner for a row 55225c65b9ecSFande Kong * The row could be local or remote 55235c65b9ecSFande Kong * */ 552434bcad68SFande Kong owner = 0; 552534bcad68SFande Kong lidx = 0; 55269566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55275c65b9ecSFande Kong iremote[i].index = lidx; 55285c65b9ecSFande Kong iremote[i].rank = owner; 55295c65b9ecSFande Kong } 55305c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55319566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5532f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55335c65b9ecSFande Kong * offsets 55345c65b9ecSFande Kong * */ 55359566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55369566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55379566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5538bc8e477aSFande Kong 55399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55409566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55425c65b9ecSFande Kong roffsets[0] = 0; 55435c65b9ecSFande Kong roffsets[1] = 0; 55445c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55454cf0e950SBarry Smith /* diagonal */ 55465c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55474cf0e950SBarry Smith /* off-diagonal */ 55485c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55495c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55505c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55515c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55525c65b9ecSFande Kong } 55539566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55555c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55609566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55619566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55629566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55635c65b9ecSFande Kong dntotalcols = 0; 55645c65b9ecSFande Kong ontotalcols = 0; 5565bc8e477aSFande Kong ncol = 0; 55665c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55675c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5568bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55694cf0e950SBarry Smith /* diagonal */ 55705c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55714cf0e950SBarry Smith /* off-diagonal */ 55725c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55735c65b9ecSFande Kong } 55745c65b9ecSFande Kong /* We do not need to figure the right number of columns 55755c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55765c65b9ecSFande Kong * */ 55779566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55789566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55799566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55805c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55814cf0e950SBarry Smith /* diagonal */ 55829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55834cf0e950SBarry Smith /* off-diagonal */ 55849566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55854cf0e950SBarry Smith /* diagonal */ 55869566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55874cf0e950SBarry Smith /* off-diagonal */ 55889566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55895c65b9ecSFande Kong dntotalcols = 0; 55905c65b9ecSFande Kong ontotalcols = 0; 55915c65b9ecSFande Kong ntotalcols = 0; 55925c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 559334bcad68SFande Kong owner = 0; 55949566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55955c65b9ecSFande Kong /* Set iremote for diag matrix */ 55965c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55975c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55985c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55995c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 56005c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 56015c65b9ecSFande Kong } 56024cf0e950SBarry Smith /* off-diagonal */ 56035c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 56045c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56055c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56065c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56075c65b9ecSFande Kong } 56085c65b9ecSFande Kong } 56099566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56109566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56119566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56129566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56135c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56145c65b9ecSFande Kong * Diag matrix 56155c65b9ecSFande Kong * */ 56169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56189566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56195c65b9ecSFande Kong 56209566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56214cf0e950SBarry Smith /* off-diagonal */ 56229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56239566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56249566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56274cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56309566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56315c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56325c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56345c65b9ecSFande Kong /* We want P_oth store global indices */ 56359566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56365c65b9ecSFande Kong /* Use memory scalable approach */ 56379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56415c65b9ecSFande Kong /* Convert back to local indices */ 56425c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56445c65b9ecSFande Kong nout = 0; 56459566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 564608401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56479566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56485c65b9ecSFande Kong /* Exchange values */ 56499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56535c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56545c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56575c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56589566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56599566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56609566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56619566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56635c65b9ecSFande Kong } 56645c65b9ecSFande Kong 56655c65b9ecSFande Kong /* 56665c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56675c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56685c65b9ecSFande Kong * */ 5669d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5670d71ae5a4SJacob Faibussowitsch { 56715c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5672bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5673bc8e477aSFande Kong IS rows, map; 5674bc8e477aSFande Kong PetscHMapI hamp; 5675bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56765c65b9ecSFande Kong MPI_Comm comm; 56775c65b9ecSFande Kong PetscSF sf, osf; 5678bc8e477aSFande Kong PetscBool has; 56795c65b9ecSFande Kong 56805c65b9ecSFande Kong PetscFunctionBegin; 56819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56835c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56845c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56855c65b9ecSFande Kong * */ 56865c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56875c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5688eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56899566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5690bc8e477aSFande Kong count = 0; 5691bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5692bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5693bc8e477aSFande Kong key = a->garray[i] / dof; 56949566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5695bc8e477aSFande Kong if (!has) { 5696bc8e477aSFande Kong mapping[i] = count; 56979566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5698bc8e477aSFande Kong } else { 5699bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5700bc8e477aSFande Kong mapping[i] = count - 1; 57015c65b9ecSFande Kong } 5702bc8e477aSFande Kong } 57039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 57049566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5705eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57069566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57075c65b9ecSFande Kong off = 0; 57089566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57099566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57109566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57119566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57125c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57139566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57149566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57159566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57169566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57185c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57195c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 572035cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5721fff043a9SJunchao Zhang */ 5722fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5723fff043a9SJunchao Zhang 57249566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57259566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 572608401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57275c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57285c65b9ecSFande Kong /* Update values in place */ 57299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57376718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57389566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57405c65b9ecSFande Kong } 57415c65b9ecSFande Kong 574225616d81SHong Zhang /*@C 574320f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 574425616d81SHong Zhang 5745c3339decSBarry Smith Collective 574625616d81SHong Zhang 574725616d81SHong Zhang Input Parameters: 574811a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574911a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 575011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 575125616d81SHong Zhang 5752f1a722f8SMatthew G. Knepley Output Parameters: 575327430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 575427430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5755f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 575625616d81SHong Zhang 575725616d81SHong Zhang Level: developer 575825616d81SHong Zhang 575920f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 576025616d81SHong Zhang @*/ 5761d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5762d71ae5a4SJacob Faibussowitsch { 5763899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5764b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 576525616d81SHong Zhang IS isrowb, iscolb; 57660298fd71SBarry Smith Mat *bseq = NULL; 576725616d81SHong Zhang 576825616d81SHong Zhang PetscFunctionBegin; 576920f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 577020f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57719566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 577225616d81SHong Zhang 577325616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5774d0f46423SBarry Smith start = A->cmap->rstart; 577525616d81SHong Zhang cmap = a->garray; 5776d0f46423SBarry Smith nzA = a->A->cmap->n; 5777d0f46423SBarry Smith nzB = a->B->cmap->n; 57789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577925616d81SHong Zhang ncols = 0; 57800390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 578125616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 578225616d81SHong Zhang else break; 578325616d81SHong Zhang } 578425616d81SHong Zhang imark = i; 57850390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57860390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57879566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57889566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578925616d81SHong Zhang } else { 579008401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57919371c9d4SSatish Balay isrowb = *rowb; 57929371c9d4SSatish Balay iscolb = *colb; 57939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 579425616d81SHong Zhang bseq[0] = *B_seq; 579525616d81SHong Zhang } 57969566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579725616d81SHong Zhang *B_seq = bseq[0]; 57989566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579925616d81SHong Zhang if (!rowb) { 58009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 580125616d81SHong Zhang } else { 580225616d81SHong Zhang *rowb = isrowb; 580325616d81SHong Zhang } 580425616d81SHong Zhang if (!colb) { 58059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 580625616d81SHong Zhang } else { 580725616d81SHong Zhang *colb = iscolb; 580825616d81SHong Zhang } 58099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 581125616d81SHong Zhang } 5812429d309bSHong Zhang 5813f8487c73SHong Zhang /* 581427430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 581501b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5816429d309bSHong Zhang 5817c3339decSBarry Smith Collective 5818429d309bSHong Zhang 5819429d309bSHong Zhang Input Parameters: 582027430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 582127430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5822429d309bSHong Zhang 5823429d309bSHong Zhang Output Parameter: 58240298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58250298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58260298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5827598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5828429d309bSHong Zhang 582911a5261eSBarry Smith Developer Note: 583011a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58316eb45d04SBarry Smith for this matrix. This is not desirable.. 58326eb45d04SBarry Smith 5833429d309bSHong Zhang Level: developer 5834429d309bSHong Zhang 5835f8487c73SHong Zhang */ 58366497c311SBarry Smith 5837d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5838d71ae5a4SJacob Faibussowitsch { 5839899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58404b8d542aSHong Zhang VecScatter ctx; 5841ce94432eSBarry Smith MPI_Comm comm; 58423515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58436497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58443515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5845277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58466497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5847277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5848ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5849ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5850429d309bSHong Zhang 5851429d309bSHong Zhang PetscFunctionBegin; 58529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5854a7c7454dSHong Zhang 585520f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 585620f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58579566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5859a6b2eed2SHong Zhang 5860ec07b8f8SHong Zhang if (size == 1) { 5861ec07b8f8SHong Zhang startsj_s = NULL; 5862ec07b8f8SHong Zhang bufa_ptr = NULL; 586352f7967eSHong Zhang *B_oth = NULL; 58643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5865ec07b8f8SHong Zhang } 5866ec07b8f8SHong Zhang 5867fa83eaafSHong Zhang ctx = a->Mvctx; 58684b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58694b8d542aSHong Zhang 58709566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58713515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58729566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58739566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5875ddea5d60SJunchao Zhang rwaits = reqs; 58768e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5877429d309bSHong Zhang 5878b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5879429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5880a6b2eed2SHong Zhang /* i-array */ 5881a6b2eed2SHong Zhang /* post receives */ 58829566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5883a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 588474268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5885e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58866497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5887429d309bSHong Zhang } 5888a6b2eed2SHong Zhang 5889a6b2eed2SHong Zhang /* pack the outgoing message */ 58909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58912205254eSKarl Rupp 58922205254eSKarl Rupp sstartsj[0] = 0; 58932205254eSKarl Rupp rstartsj[0] = 0; 5894a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58953515ee7fSJunchao Zhang if (nsends) { 58963515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58983515ee7fSJunchao Zhang } 5899a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 59003515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5901e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 590287025532SHong Zhang for (j = 0; j < nrows; j++) { 5903d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5904e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59059566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59062205254eSKarl Rupp 5907e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59082205254eSKarl Rupp 5909e42f35eeSHong Zhang len += ncols; 59109566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5911e42f35eeSHong Zhang } 5912a6b2eed2SHong Zhang k++; 5913429d309bSHong Zhang } 59146497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59152205254eSKarl Rupp 5916dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5917429d309bSHong Zhang } 591887025532SHong Zhang /* recvs and sends of i-array are completed */ 59199566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59209566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5921e42f35eeSHong Zhang 5922a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5925a6b2eed2SHong Zhang 592687025532SHong Zhang /* create i-array of B_oth */ 59279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59282205254eSKarl Rupp 592987025532SHong Zhang b_othi[0] = 0; 5930a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5931a6b2eed2SHong Zhang k = 0; 5932a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59333515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59343515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 593587025532SHong Zhang for (j = 0; j < nrows; j++) { 593687025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59379566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5938f91af8c7SBarry Smith k++; 5939a6b2eed2SHong Zhang } 5940dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5941a6b2eed2SHong Zhang } 59429566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5943a6b2eed2SHong Zhang 59446aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5947a6b2eed2SHong Zhang 594887025532SHong Zhang /* j-array */ 5949a6b2eed2SHong Zhang /* post receives of j-array */ 5950a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 595187025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59526497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5953a6b2eed2SHong Zhang } 5954e42f35eeSHong Zhang 5955e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59563515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5957a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5958e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5959a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 596087025532SHong Zhang for (j = 0; j < nrows; j++) { 5961d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5962e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59639566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5964ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59659566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5966e42f35eeSHong Zhang } 596787025532SHong Zhang } 59686497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596987025532SHong Zhang } 597087025532SHong Zhang 597187025532SHong Zhang /* recvs and sends of j-array are completed */ 59729566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 597387025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5974b7f45c76SHong Zhang sstartsj = *startsj_s; 59751d79065fSBarry Smith rstartsj = *startsj_r; 597687025532SHong Zhang bufa = *bufa_ptr; 59779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5978ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597987025532SHong Zhang 598087025532SHong Zhang /* a-array */ 598187025532SHong Zhang /* post receives of a-array */ 598287025532SHong Zhang for (i = 0; i < nrecvs; i++) { 598387025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59846497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 598587025532SHong Zhang } 5986e42f35eeSHong Zhang 5987e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59883515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598987025532SHong Zhang for (i = 0; i < nsends; i++) { 5990e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 599187025532SHong Zhang bufA = bufa + sstartsj[i]; 599287025532SHong Zhang for (j = 0; j < nrows; j++) { 5993d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5994e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59959566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5996ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59979566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5998e42f35eeSHong Zhang } 5999a6b2eed2SHong Zhang } 60006497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 6001a6b2eed2SHong Zhang } 600287025532SHong Zhang /* recvs and sends of a-array are completed */ 60039566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60049566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6005a6b2eed2SHong Zhang 600687025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6007dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 6008dd460d27SBarry Smith 6009a6b2eed2SHong Zhang /* put together the new matrix */ 60109566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6011a6b2eed2SHong Zhang 6012a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6013a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 601487025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6015e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6016e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 601787025532SHong Zhang b_oth->nonew = 0; 6018a6b2eed2SHong Zhang 60199566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6020b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60219566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60229566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6023dea91ad1SHong Zhang } else { 6024b7f45c76SHong Zhang *startsj_s = sstartsj; 60251d79065fSBarry Smith *startsj_r = rstartsj; 602687025532SHong Zhang *bufa_ptr = bufa; 602787025532SHong Zhang } 6028fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6030dea91ad1SHong Zhang } 60313515ee7fSJunchao Zhang 60329566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60339566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6036429d309bSHong Zhang } 6037ccd8e176SBarry Smith 6038cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6039cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6040ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60419779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6042a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6043191b95cbSRichard Tran Mills #endif 6044ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6045cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60465d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6047cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60485d7652ecSHong Zhang #endif 6049d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6050d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6051d24d4204SJose E. Roman #endif 605263c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 605363c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 605463c07aadSStefano Zampini #endif 60553338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60563338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60573338378cSStefano Zampini #endif 6058d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6059d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6060d5e393b6SSuyash Tandon #endif 60613d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60623d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60633d0639e7SStefano Zampini #endif 6064d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60654222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60664222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 606717667f90SBarry Smith 6068fc4dec0aSBarry Smith /* 6069fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6070fc4dec0aSBarry Smith 6071fc4dec0aSBarry Smith n p p 60722da392ccSBarry Smith [ ] [ ] [ ] 60732da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60742da392ccSBarry Smith [ ] [ ] [ ] 6075fc4dec0aSBarry Smith 6076fc4dec0aSBarry Smith */ 6077d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6078d71ae5a4SJacob Faibussowitsch { 6079fc4dec0aSBarry Smith Mat At, Bt, Ct; 6080fc4dec0aSBarry Smith 6081fc4dec0aSBarry Smith PetscFunctionBegin; 60829566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60839566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6084fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60877fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60889566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6091fc4dec0aSBarry Smith } 6092fc4dec0aSBarry Smith 6093d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6094d71ae5a4SJacob Faibussowitsch { 60956718818eSStefano Zampini PetscBool cisdense; 6096fc4dec0aSBarry Smith 6097fc4dec0aSBarry Smith PetscFunctionBegin; 609808401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 61009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6101d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 610248a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 61039566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6104f75ecaa4SHong Zhang 61054222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6107fc4dec0aSBarry Smith } 6108fc4dec0aSBarry Smith 6109d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6110d71ae5a4SJacob Faibussowitsch { 61114222ddf1SHong Zhang Mat_Product *product = C->product; 61124222ddf1SHong Zhang Mat A = product->A, B = product->B; 6113fc4dec0aSBarry Smith 6114fc4dec0aSBarry Smith PetscFunctionBegin; 611520f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 611620f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61174222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61184222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6120fc4dec0aSBarry Smith } 6121fc4dec0aSBarry Smith 6122d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6123d71ae5a4SJacob Faibussowitsch { 61244222ddf1SHong Zhang Mat_Product *product = C->product; 61254222ddf1SHong Zhang 61264222ddf1SHong Zhang PetscFunctionBegin; 612748a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61294222ddf1SHong Zhang } 6130394ed5ebSJunchao Zhang 613127430b45SBarry Smith /* 613227430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6133394ed5ebSJunchao Zhang 6134394ed5ebSJunchao Zhang Input Parameters: 6135394ed5ebSJunchao Zhang 6136651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6137651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6138394ed5ebSJunchao Zhang 6139158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6140394ed5ebSJunchao Zhang 6141394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6142394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6143394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6144394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6145394ed5ebSJunchao Zhang 6146394ed5ebSJunchao Zhang Similar for Set2. 6147394ed5ebSJunchao Zhang 6148394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6149394ed5ebSJunchao Zhang 6150158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6151394ed5ebSJunchao Zhang 6152394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6153394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6154394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6155394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6156394ed5ebSJunchao Zhang */ 6157d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6158d71ae5a4SJacob Faibussowitsch { 6159394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6160394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6161394ed5ebSJunchao Zhang 6162394ed5ebSJunchao Zhang PetscFunctionBegin; 61639566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6164394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6165394ed5ebSJunchao Zhang i[0] = 0; 6166394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6167394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6168394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6169394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6170394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6171394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6172394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6173394ed5ebSJunchao Zhang j[t] = j1[b1]; 6174394ed5ebSJunchao Zhang imap1[t1] = t; 6175394ed5ebSJunchao Zhang imap2[t2] = t; 6176394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6177394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61789371c9d4SSatish Balay t1++; 61799371c9d4SSatish Balay t2++; 61809371c9d4SSatish Balay t++; 6181394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6182394ed5ebSJunchao Zhang j[t] = j1[b1]; 6183394ed5ebSJunchao Zhang imap1[t1] = t; 6184394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61859371c9d4SSatish Balay t1++; 61869371c9d4SSatish Balay t++; 6187394ed5ebSJunchao Zhang } else { 6188394ed5ebSJunchao Zhang j[t] = j2[b2]; 6189394ed5ebSJunchao Zhang imap2[t2] = t; 6190394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61919371c9d4SSatish Balay t2++; 61929371c9d4SSatish Balay t++; 6193394ed5ebSJunchao Zhang } 6194394ed5ebSJunchao Zhang } 6195394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6196394ed5ebSJunchao Zhang while (b1 < e1) { 6197394ed5ebSJunchao Zhang j[t] = j1[b1]; 6198394ed5ebSJunchao Zhang imap1[t1] = t; 6199394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 62009371c9d4SSatish Balay t1++; 62019371c9d4SSatish Balay t++; 6202394ed5ebSJunchao Zhang } 6203394ed5ebSJunchao Zhang while (b2 < e2) { 6204394ed5ebSJunchao Zhang j[t] = j2[b2]; 6205394ed5ebSJunchao Zhang imap2[t2] = t; 6206394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62079371c9d4SSatish Balay t2++; 62089371c9d4SSatish Balay t++; 6209394ed5ebSJunchao Zhang } 62106497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6211394ed5ebSJunchao Zhang } 62123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6213394ed5ebSJunchao Zhang } 6214394ed5ebSJunchao Zhang 621527430b45SBarry Smith /* 621627430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6217394ed5ebSJunchao Zhang 6218394ed5ebSJunchao Zhang Input Parameters: 6219394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6220394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6221394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6222394ed5ebSJunchao Zhang 6223394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6224394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6225394ed5ebSJunchao Zhang 6226394ed5ebSJunchao Zhang Output Parameters: 6227394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6228394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6229394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6230394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6231394ed5ebSJunchao Zhang 6232394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6233158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6234158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6235394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6236394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6237394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6238394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6239394ed5ebSJunchao Zhang 6240394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6241394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6242394ed5ebSJunchao Zhang 6243394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6244394ed5ebSJunchao Zhang 6245158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6246394ed5ebSJunchao Zhang */ 6247d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6248d71ae5a4SJacob Faibussowitsch { 6249394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6250394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6251394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6252394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6253394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6254394ed5ebSJunchao Zhang 6255394ed5ebSJunchao Zhang PetscFunctionBegin; 62569566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62579566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6258394ed5ebSJunchao Zhang m = rend - rstart; 6259394ed5ebSJunchao Zhang 6260651b1cf9SStefano Zampini /* Skip negative rows */ 6261651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62629371c9d4SSatish Balay if (i[k] >= 0) break; 6263394ed5ebSJunchao Zhang 6264394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6265394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6266394ed5ebSJunchao Zhang */ 6267394ed5ebSJunchao Zhang while (k < n) { 6268394ed5ebSJunchao Zhang row = i[k]; 6269394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62709371c9d4SSatish Balay for (s = k; s < n; s++) 62719371c9d4SSatish Balay if (i[s] != row) break; 6272651b1cf9SStefano Zampini 62731690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6274394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62751690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 627654c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6277394ed5ebSJunchao Zhang } 62789566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6279158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6280394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6281394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6282394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6283394ed5ebSJunchao Zhang 6284394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6285394ed5ebSJunchao Zhang Atot += mid - k; 6286394ed5ebSJunchao Zhang Btot += s - mid; 6287394ed5ebSJunchao Zhang 6288651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6289394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6290394ed5ebSJunchao Zhang col = j[p]; 62919371c9d4SSatish Balay do { 62921690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62939371c9d4SSatish Balay p++; 6294651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6295394ed5ebSJunchao Zhang Annz++; 6296394ed5ebSJunchao Zhang } 6297394ed5ebSJunchao Zhang 6298651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6299394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6300394ed5ebSJunchao Zhang col = j[p]; 6301d71ae5a4SJacob Faibussowitsch do { 6302d71ae5a4SJacob Faibussowitsch p++; 6303d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6304394ed5ebSJunchao Zhang Bnnz++; 6305394ed5ebSJunchao Zhang } 6306394ed5ebSJunchao Zhang k = s; 6307394ed5ebSJunchao Zhang } 6308394ed5ebSJunchao Zhang 6309394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6310158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6311158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6312158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6313158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6314394ed5ebSJunchao Zhang 63156aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6316394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6317394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6318394ed5ebSJunchao Zhang k = rowBegin[r]; 6319394ed5ebSJunchao Zhang mid = rowMid[r]; 6320394ed5ebSJunchao Zhang s = rowEnd[r]; 63218e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63228e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6323394ed5ebSJunchao Zhang Atot += mid - k; 6324394ed5ebSJunchao Zhang Btot += s - mid; 6325394ed5ebSJunchao Zhang 6326394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6327394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6328394ed5ebSJunchao Zhang col = j[p]; 6329394ed5ebSJunchao Zhang q = p; 6330d71ae5a4SJacob Faibussowitsch do { 6331d71ae5a4SJacob Faibussowitsch p++; 6332d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6333394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6334394ed5ebSJunchao Zhang Annz++; 6335394ed5ebSJunchao Zhang } 6336394ed5ebSJunchao Zhang 6337394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6338394ed5ebSJunchao Zhang col = j[p]; 6339394ed5ebSJunchao Zhang q = p; 6340d71ae5a4SJacob Faibussowitsch do { 6341d71ae5a4SJacob Faibussowitsch p++; 6342d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6343394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6344394ed5ebSJunchao Zhang Bnnz++; 6345394ed5ebSJunchao Zhang } 6346394ed5ebSJunchao Zhang } 6347394ed5ebSJunchao Zhang /* Output */ 6348394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6349394ed5ebSJunchao Zhang *Annz_ = Annz; 6350394ed5ebSJunchao Zhang *Atot_ = Atot; 6351394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6352394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6353394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6354394ed5ebSJunchao Zhang *Btot_ = Btot; 6355394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6357394ed5ebSJunchao Zhang } 6358394ed5ebSJunchao Zhang 635927430b45SBarry Smith /* 636027430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6361158ec288SJunchao Zhang 6362158ec288SJunchao Zhang Input Parameters: 6363158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6364158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6365158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6366651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6367158ec288SJunchao Zhang 6368158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6369158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6370158ec288SJunchao Zhang 6371158ec288SJunchao Zhang Example: 6372158ec288SJunchao Zhang nnz1 = 4 6373158ec288SJunchao Zhang nnz = 6 6374158ec288SJunchao Zhang imap = [1,3,4,5] 6375158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6376158ec288SJunchao Zhang then, 6377158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6378158ec288SJunchao Zhang */ 6379d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6380d71ae5a4SJacob Faibussowitsch { 6381158ec288SJunchao Zhang PetscCount k, p; 6382158ec288SJunchao Zhang 6383158ec288SJunchao Zhang PetscFunctionBegin; 6384158ec288SJunchao Zhang jmap_new[0] = 0; 6385158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6386158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6387158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6388158ec288SJunchao Zhang } 6389158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6391158ec288SJunchao Zhang } 6392158ec288SJunchao Zhang 63932c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63942c4ab24aSJunchao Zhang { 63952c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63962c4ab24aSJunchao Zhang 63972c4ab24aSJunchao Zhang PetscFunctionBegin; 63982c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 64032c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 64042c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 64052c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64062c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64072c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64082c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64092c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64102c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64112c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64122c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64132c4ab24aSJunchao Zhang } 64142c4ab24aSJunchao Zhang 6415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6416d71ae5a4SJacob Faibussowitsch { 6417394ed5ebSJunchao Zhang MPI_Comm comm; 6418394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6419394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6420394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6421394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64222c4ab24aSJunchao Zhang PetscContainer container; 64232c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6424394ed5ebSJunchao Zhang 6425394ed5ebSJunchao Zhang PetscFunctionBegin; 64269566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6428cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6429eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6430cbc6b225SStefano Zampini #else 64319566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6432cbc6b225SStefano Zampini #endif 64339566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6434cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6435cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6436cbc6b225SStefano Zampini 64379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64429566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64439566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64449566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64459566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6446394ed5ebSJunchao Zhang 64476aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6448394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6449394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6450e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6451e8729f6fSJunchao Zhang 6452e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6453394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6454394ed5ebSJunchao Zhang 6455394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6456394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6457394ed5ebSJunchao Zhang will have positive row indices. 6458394ed5ebSJunchao Zhang */ 6459394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64601690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64611690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6462f7d195e4SLawrence Mitchell else { 6463f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64641690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6465f7d195e4SLawrence Mitchell } 6466394ed5ebSJunchao Zhang } 6467394ed5ebSJunchao Zhang 6468da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64699566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6470651b1cf9SStefano Zampini 6471651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6472651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64731690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64746497c311SBarry Smith PetscCount i1start = k; 6475651b1cf9SStefano Zampini 64761690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64771690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6478394ed5ebSJunchao Zhang 6479394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6480394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6481394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6482394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6483394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6484394ed5ebSJunchao Zhang const PetscInt *ranges; 6485394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6486394ed5ebSJunchao Zhang 64879566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6489394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6490394ed5ebSJunchao Zhang PetscMPIInt owner; 6491394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6492cbc6b225SStefano Zampini 6493394ed5ebSJunchao Zhang /* Locate a row range */ 6494394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64959566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6496394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6497394ed5ebSJunchao Zhang 6498394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64999566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6500394ed5ebSJunchao Zhang 6501394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6502394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6503394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6504394ed5ebSJunchao Zhang PetscInt *nentries2; 6505394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6506cbc6b225SStefano Zampini 65079566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65089566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65109566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6511394ed5ebSJunchao Zhang sendto = sendto2; 6512394ed5ebSJunchao Zhang nentries = nentries2; 6513394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6514394ed5ebSJunchao Zhang } 6515394ed5ebSJunchao Zhang sendto[nsend] = owner; 65166497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6517394ed5ebSJunchao Zhang nsend++; 6518394ed5ebSJunchao Zhang k = p; 6519394ed5ebSJunchao Zhang } 6520394ed5ebSJunchao Zhang 6521394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6522394ed5ebSJunchao Zhang PetscSF sf1; 6523394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6524394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6525394ed5ebSJunchao Zhang PetscInt *offsets; 6526394ed5ebSJunchao Zhang PetscSFNode *iremote; 6527394ed5ebSJunchao Zhang 65289566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6531394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6532394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6533394ed5ebSJunchao Zhang iremote[k].index = 0; 6534394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 653554c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6536394ed5ebSJunchao Zhang } 65379566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65389566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65399566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65409566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6541e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6542394ed5ebSJunchao Zhang 6543394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6544394ed5ebSJunchao Zhang PetscSF sf2; 6545394ed5ebSJunchao Zhang nroots = nroots2; 6546394ed5ebSJunchao Zhang nleaves = nleaves2; 65479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65489566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6550394ed5ebSJunchao Zhang p = 0; 6551394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 655254c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6553394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6554394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65556497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6556394ed5ebSJunchao Zhang } 6557394ed5ebSJunchao Zhang } 65589566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6559394ed5ebSJunchao Zhang 6560394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6561394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6562394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65639566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6564834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6565834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6566de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6567de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6568834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6569834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6570834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6571834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6572394ed5ebSJunchao Zhang 65739566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65749566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6575394ed5ebSJunchao Zhang 6576394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6577394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65789566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6579394ed5ebSJunchao Zhang 6580651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6581651b1cf9SStefano Zampini PetscCount *Cperm1; 6582834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6583de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6584651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6585834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6586651b1cf9SStefano Zampini 6587651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6588651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6589651b1cf9SStefano Zampini PetscBool hypre; 659017b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6591651b1cf9SStefano Zampini if (hypre) { 6592651b1cf9SStefano Zampini PetscInt *minj; 6593651b1cf9SStefano Zampini PetscBT hasdiag; 6594651b1cf9SStefano Zampini 6595651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6596651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65971690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6598651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6599651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6600651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6601651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6602651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6603651b1cf9SStefano Zampini } 6604651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6605651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6606651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6607651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6608651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6609651b1cf9SStefano Zampini } 6610651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6611651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6612651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6613651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6614651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6615651b1cf9SStefano Zampini } 6616651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6617651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6618651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6619651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6620651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6621651b1cf9SStefano Zampini } 6622651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6623651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6624651b1cf9SStefano Zampini } 6625651b1cf9SStefano Zampini 6626651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6627651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6628651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6629651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6630394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6631394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6632394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6633394ed5ebSJunchao Zhang 6634651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66359566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6636651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66379566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6638394ed5ebSJunchao Zhang 6639394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6640394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6641394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6642394ed5ebSJunchao Zhang 66439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6647394ed5ebSJunchao Zhang 6648394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6649158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6650158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6651158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6652158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6653394ed5ebSJunchao Zhang 66549566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66559566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6656158ec288SJunchao Zhang 6657158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6658158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6659158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6660158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6661158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6662158ec288SJunchao Zhang 6663158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6664158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6665158ec288SJunchao Zhang 6666158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6667158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6668158ec288SJunchao Zhang 6669158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6670158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6671158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6672158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66739566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66749566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6675e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66769566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6677394ed5ebSJunchao Zhang 6678158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6679158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6680158ec288SJunchao Zhang 6681394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6682394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6683394ed5ebSJunchao Zhang PetscInt *Aj_new; 66849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66869566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6687394ed5ebSJunchao Zhang Aj = Aj_new; 6688394ed5ebSJunchao Zhang } 6689394ed5ebSJunchao Zhang 6690394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6691394ed5ebSJunchao Zhang PetscInt *Bj_new; 66929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66939566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66949566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6695394ed5ebSJunchao Zhang Bj = Bj_new; 6696394ed5ebSJunchao Zhang } 6697394ed5ebSJunchao Zhang 6698cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6699394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6700cbc6b225SStefano Zampini MatType rtype; 6701394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6702cf8ba265SJunchao Zhang PetscObjectState state; 67039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 67049566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6705394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67069371c9d4SSatish Balay if (cstart) { 67079371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67089371c9d4SSatish Balay } 6709c508b908SBarry Smith 67109566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6711c508b908SBarry Smith 6712c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6713c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67149566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67150da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6716c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6717c508b908SBarry Smith 6718c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6719c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67209566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67210da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6722c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6723c508b908SBarry Smith 67249566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67255bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6726cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6727462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6728cbc6b225SStefano Zampini 6729394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6730394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67319f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67329f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67339f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67349f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 673517b874c6SStefano Zampini a->maxnz = a->nz; 673617b874c6SStefano Zampini b->maxnz = b->nz; 6737394ed5ebSJunchao Zhang 6738cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67399566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67409566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67429566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6743cbc6b225SStefano Zampini 67442c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67452c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67462c4ab24aSJunchao Zhang coo->n = coo_n; 67472c4ab24aSJunchao Zhang coo->sf = sf2; 67482c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67492c4ab24aSJunchao Zhang coo->recvlen = nroots; 67502c4ab24aSJunchao Zhang coo->Annz = Annz; 67512c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67522c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67532c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67542c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67552c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67562c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67572c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67582c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67592c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67602c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67612c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67622c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67632c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67642c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67652c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67662c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67672c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67682c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67692c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67702c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67712c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67722c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67732c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67742c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67752c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6777394ed5ebSJunchao Zhang } 6778394ed5ebSJunchao Zhang 6779d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6780d71ae5a4SJacob Faibussowitsch { 6781394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6782394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6783394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67842c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67852c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67862c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67872c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67882c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67892c4ab24aSJunchao Zhang PetscContainer container; 67902c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6791394ed5ebSJunchao Zhang 6792394ed5ebSJunchao Zhang PetscFunctionBegin; 67932c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67942c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67952c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67962c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67972c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67982c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67992c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 68002c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 68012c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 68022c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 68032c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 68042c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 68052c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68062c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68072c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68082c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68092c4ab24aSJunchao Zhang 68109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6812394ed5ebSJunchao Zhang 6813394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68142c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6815394ed5ebSJunchao Zhang 6816394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68172c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6818394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68192c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6820da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6821158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6822158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6823394ed5ebSJunchao Zhang } 68242c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6825158ec288SJunchao Zhang PetscScalar sum = 0.0; 6826158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6827158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6828394ed5ebSJunchao Zhang } 68292c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6830394ed5ebSJunchao Zhang 6831394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68322c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6833394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6834394ed5ebSJunchao Zhang } 68352c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6836394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6837394ed5ebSJunchao Zhang } 68389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6841394ed5ebSJunchao Zhang } 6842394ed5ebSJunchao Zhang 6843ccd8e176SBarry Smith /*MC 6844ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6845ccd8e176SBarry Smith 6846ccd8e176SBarry Smith Options Database Keys: 684711a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6848ccd8e176SBarry Smith 6849ccd8e176SBarry Smith Level: beginner 68500cd7f59aSBarry Smith 68510cd7f59aSBarry Smith Notes: 68522ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68530cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68540cd7f59aSBarry Smith in the matrix 68550cd7f59aSBarry Smith 685611a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 685711a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6858ccd8e176SBarry Smith 68591cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6860ccd8e176SBarry Smith M*/ 6861d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6862d71ae5a4SJacob Faibussowitsch { 6863ccd8e176SBarry Smith Mat_MPIAIJ *b; 6864ccd8e176SBarry Smith PetscMPIInt size; 6865ccd8e176SBarry Smith 6866ccd8e176SBarry Smith PetscFunctionBegin; 68679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68682205254eSKarl Rupp 68694dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6870ccd8e176SBarry Smith B->data = (void *)b; 6871aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6872ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6873ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6874ccd8e176SBarry Smith b->size = size; 68752205254eSKarl Rupp 68769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6877ccd8e176SBarry Smith 6878ccd8e176SBarry Smith /* build cache for off array entries formed */ 68799566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68802205254eSKarl Rupp 6881ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6882f4259b30SLisandro Dalcin b->colmap = NULL; 6883f4259b30SLisandro Dalcin b->garray = NULL; 6884ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6885ccd8e176SBarry Smith 6886ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68870298fd71SBarry Smith b->lvec = NULL; 68880298fd71SBarry Smith b->Mvctx = NULL; 6889ccd8e176SBarry Smith 6890ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6891f4259b30SLisandro Dalcin b->rowindices = NULL; 6892f4259b30SLisandro Dalcin b->rowvalues = NULL; 6893ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6894ccd8e176SBarry Smith 6895f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68960298fd71SBarry Smith b->spptr = NULL; 6897f60c3dc2SHong Zhang 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 69009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 69029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 69049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 69059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69083d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69103d0639e7SStefano Zampini #endif 6911d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6912d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6913d5e393b6SSuyash Tandon #endif 69143d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69163d0639e7SStefano Zampini #endif 69179779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6919191b95cbSRichard Tran Mills #endif 69209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69245d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69265d7652ecSHong Zhang #endif 6927d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6929d24d4204SJose E. Roman #endif 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69323dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69353dad0653Sstefano_zampini #endif 69369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69409566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6942ccd8e176SBarry Smith } 694381824310SBarry Smith 69445d83a8b1SBarry Smith /*@ 694511a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 694603bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 694703bfb495SBarry Smith 6948d083f849SBarry Smith Collective 694903bfb495SBarry Smith 695003bfb495SBarry Smith Input Parameters: 695103bfb495SBarry Smith + comm - MPI communicator 695211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 695303bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6954d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69552ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69562ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69572ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6958483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 695904ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 696003bfb495SBarry Smith . a - matrix values 6961483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69622ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 696303bfb495SBarry Smith - oa - matrix values 696403bfb495SBarry Smith 696503bfb495SBarry Smith Output Parameter: 696603bfb495SBarry Smith . mat - the matrix 696703bfb495SBarry Smith 696803bfb495SBarry Smith Level: advanced 696903bfb495SBarry Smith 697003bfb495SBarry Smith Notes: 6971f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6972292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 697303bfb495SBarry Smith 69742ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 697503bfb495SBarry Smith 69762ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 697703bfb495SBarry Smith 69787b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69797b55108eSBarry Smith 6980dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6981dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6982dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6983dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 698411a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6985dca341c0SJed Brown communication if it is known that only local entries will be set. 698603bfb495SBarry Smith 69871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6988db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69892b26979fSBarry Smith @*/ 6990d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6991d71ae5a4SJacob Faibussowitsch { 699203bfb495SBarry Smith Mat_MPIAIJ *maij; 699303bfb495SBarry Smith 699403bfb495SBarry Smith PetscFunctionBegin; 699508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6996aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6997aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69989566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 70009566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 700103bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 70022205254eSKarl Rupp 70038d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 700403bfb495SBarry Smith 70059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 700703bfb495SBarry Smith 70089566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70099566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 701003bfb495SBarry Smith 70119566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70149566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70159566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 701703bfb495SBarry Smith } 701803bfb495SBarry Smith 70194e84afc0SStefano Zampini typedef struct { 70204e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70214e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70224e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70234e84afc0SStefano Zampini 70244e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70254e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70264e84afc0SStefano Zampini PetscScalar *bufa; 70274e84afc0SStefano Zampini Mat P_oth; 70284e84afc0SStefano Zampini 70294e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7030ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70314e84afc0SStefano Zampini 7032ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70334e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70344e84afc0SStefano Zampini of the temporary storage */ 70354e84afc0SStefano Zampini PetscBool reusesym; 70364e84afc0SStefano Zampini 70374e84afc0SStefano Zampini /* support for COO values insertion */ 7038ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7039ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7040ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7041ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7042c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7043c215019aSStefano Zampini PetscMemType mtype; 70444e84afc0SStefano Zampini 70454e84afc0SStefano Zampini /* customization */ 70464e84afc0SStefano Zampini PetscBool abmerge; 7047abb89eb1SStefano Zampini PetscBool P_oth_bind; 70484e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70494e84afc0SStefano Zampini 7050ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7051d71ae5a4SJacob Faibussowitsch { 70524e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70534e84afc0SStefano Zampini PetscInt i; 70544e84afc0SStefano Zampini 70554e84afc0SStefano Zampini PetscFunctionBegin; 70569566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70579566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70589566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70599566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70609566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 706348a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70649566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70659566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70669566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70679566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70689566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70699566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70714e84afc0SStefano Zampini } 70724e84afc0SStefano Zampini 7073fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7074fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7075fff043a9SJunchao Zhang */ 7076d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7077d71ae5a4SJacob Faibussowitsch { 7078c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7079c215019aSStefano Zampini 7080c215019aSStefano Zampini PetscFunctionBegin; 70819566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7082c215019aSStefano Zampini if (f) { 70839566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7084c215019aSStefano Zampini } else { 7085c215019aSStefano Zampini const PetscScalar *vv; 7086c215019aSStefano Zampini 70879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7088c215019aSStefano Zampini if (n && idx) { 7089c215019aSStefano Zampini PetscScalar *w = v; 7090c215019aSStefano Zampini const PetscInt *oi = idx; 7091c215019aSStefano Zampini PetscInt j; 7092c215019aSStefano Zampini 7093c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7094c215019aSStefano Zampini } else { 70959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7096c215019aSStefano Zampini } 70979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7098c215019aSStefano Zampini } 70993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7100c215019aSStefano Zampini } 7101c215019aSStefano Zampini 7102d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7103d71ae5a4SJacob Faibussowitsch { 71044e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71054e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71064e84afc0SStefano Zampini 71074e84afc0SStefano Zampini PetscFunctionBegin; 71084e84afc0SStefano Zampini MatCheckProduct(C, 1); 710928b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71104e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71114e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 711248a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 711348a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71144e84afc0SStefano Zampini } 71154e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7116abb89eb1SStefano Zampini 7117abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 711808401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71199566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7120abb89eb1SStefano Zampini } 71214e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71226497c311SBarry Smith PetscInt noff; 71234e84afc0SStefano Zampini 71246497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71254e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71264e84afc0SStefano Zampini if (noff) { 71276497c311SBarry Smith PetscInt nown; 7128c215019aSStefano Zampini 71296497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71324e84afc0SStefano Zampini n_o += noff; 71334e84afc0SStefano Zampini n_d += nown; 71344e84afc0SStefano Zampini } else { 7135c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7136c215019aSStefano Zampini 71379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71384e84afc0SStefano Zampini n_d += mm->nz; 71394e84afc0SStefano Zampini } 71404e84afc0SStefano Zampini } 7141c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71429566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71439566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71444e84afc0SStefano Zampini } 71459566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71474e84afc0SStefano Zampini } 71484e84afc0SStefano Zampini 71494e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71504e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7151d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7152d71ae5a4SJacob Faibussowitsch { 71534e84afc0SStefano Zampini Mat_Product *product = C->product; 7154ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71554e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71564e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71574e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71584e84afc0SStefano Zampini IS glob = NULL; 71594e84afc0SStefano Zampini const char *prefix; 71604e84afc0SStefano Zampini char pprefix[256]; 71614e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 716282a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 716382a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7164ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7165ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7166ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7167ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7168ddea5d60SJunchao Zhang 71694e84afc0SStefano Zampini MatProductType ptype; 7170d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71714e84afc0SStefano Zampini PetscMPIInt size; 71724e84afc0SStefano Zampini 71734e84afc0SStefano Zampini PetscFunctionBegin; 71744e84afc0SStefano Zampini MatCheckProduct(C, 1); 717528b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71764e84afc0SStefano Zampini ptype = product->type; 7177b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7178fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7179fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7180fa046f9fSJunchao Zhang } 71814e84afc0SStefano Zampini switch (ptype) { 71824e84afc0SStefano Zampini case MATPRODUCT_AB: 71834e84afc0SStefano Zampini A = product->A; 71844e84afc0SStefano Zampini P = product->B; 71854e84afc0SStefano Zampini m = A->rmap->n; 71864e84afc0SStefano Zampini n = P->cmap->n; 71874e84afc0SStefano Zampini M = A->rmap->N; 71884e84afc0SStefano Zampini N = P->cmap->N; 7189ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71904e84afc0SStefano Zampini break; 71914e84afc0SStefano Zampini case MATPRODUCT_AtB: 71924e84afc0SStefano Zampini P = product->A; 71934e84afc0SStefano Zampini A = product->B; 71944e84afc0SStefano Zampini m = P->cmap->n; 71954e84afc0SStefano Zampini n = A->cmap->n; 71964e84afc0SStefano Zampini M = P->cmap->N; 71974e84afc0SStefano Zampini N = A->cmap->N; 71984e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71994e84afc0SStefano Zampini break; 72004e84afc0SStefano Zampini case MATPRODUCT_PtAP: 72014e84afc0SStefano Zampini A = product->A; 72024e84afc0SStefano Zampini P = product->B; 72034e84afc0SStefano Zampini m = P->cmap->n; 72044e84afc0SStefano Zampini n = P->cmap->n; 72054e84afc0SStefano Zampini M = P->cmap->N; 72064e84afc0SStefano Zampini N = P->cmap->N; 72074e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72084e84afc0SStefano Zampini break; 7209d71ae5a4SJacob Faibussowitsch default: 7210d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72114e84afc0SStefano Zampini } 72129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72134e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72144e84afc0SStefano Zampini 72154e84afc0SStefano Zampini /* defaults */ 72164e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72174e84afc0SStefano Zampini mp[i] = NULL; 72184e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72194e84afc0SStefano Zampini rmapt[i] = -1; 72204e84afc0SStefano Zampini cmapt[i] = -1; 72214e84afc0SStefano Zampini rmapa[i] = NULL; 72224e84afc0SStefano Zampini cmapa[i] = NULL; 72234e84afc0SStefano Zampini } 72244e84afc0SStefano Zampini 72254e84afc0SStefano Zampini /* customization */ 72269566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72274e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72284e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72294e84afc0SStefano Zampini if (product->api_user) { 7230d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72329566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7233d0609cedSBarry Smith PetscOptionsEnd(); 72344e84afc0SStefano Zampini } else { 7235d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72369566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72379566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7238d0609cedSBarry Smith PetscOptionsEnd(); 7239abb89eb1SStefano Zampini } 7240abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7241abb89eb1SStefano Zampini if (product->api_user) { 7242d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72439566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7244d0609cedSBarry Smith PetscOptionsEnd(); 7245abb89eb1SStefano Zampini } else { 7246d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72479566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7248d0609cedSBarry Smith PetscOptionsEnd(); 72494e84afc0SStefano Zampini } 72504e84afc0SStefano Zampini } 72514e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72524e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72559566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72569566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72579566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7258ddea5d60SJunchao Zhang 7259ddea5d60SJunchao Zhang cp = 0; 72604e84afc0SStefano Zampini switch (ptype) { 72614e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72629566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72634e84afc0SStefano Zampini 7264ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7265ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72664e84afc0SStefano Zampini /* P is product->B */ 72679566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72689566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72709566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72729566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72739566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72744e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72769566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72784e84afc0SStefano Zampini rmapt[cp] = 1; 72794e84afc0SStefano Zampini cmapt[cp] = 2; 72804e84afc0SStefano Zampini cmapa[cp] = globidx; 72814e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72824e84afc0SStefano Zampini cp++; 7283ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72849566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72859566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72869566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72879566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72889566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72899566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72904e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72919566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72929566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72934e84afc0SStefano Zampini rmapt[cp] = 1; 72944e84afc0SStefano Zampini cmapt[cp] = 1; 72954e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72964e84afc0SStefano Zampini cp++; 72979566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72989566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72999566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73009566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73019566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73029566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73034e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73049566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73059566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73064e84afc0SStefano Zampini rmapt[cp] = 1; 73074e84afc0SStefano Zampini cmapt[cp] = 2; 73084e84afc0SStefano Zampini cmapa[cp] = p->garray; 73094e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73104e84afc0SStefano Zampini cp++; 73114e84afc0SStefano Zampini } 7312ddea5d60SJunchao Zhang 7313ddea5d60SJunchao Zhang /* A_off * P_other */ 73144e84afc0SStefano Zampini if (mmdata->P_oth) { 73159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73169566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7317f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73189566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73199566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73209566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73219566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73229566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73239566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73249566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73254e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73269566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73279566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73284e84afc0SStefano Zampini rmapt[cp] = 1; 73294e84afc0SStefano Zampini cmapt[cp] = 2; 73304e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73314e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73324e84afc0SStefano Zampini cp++; 73334e84afc0SStefano Zampini } 73344e84afc0SStefano Zampini break; 7335ddea5d60SJunchao Zhang 73364e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73374e84afc0SStefano Zampini /* A is product->B */ 73389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7339ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73409566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73419566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73429566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73439566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73449566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73459566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73464e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73479566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73489566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73504e84afc0SStefano Zampini rmapt[cp] = 2; 73514e84afc0SStefano Zampini rmapa[cp] = globidx; 73524e84afc0SStefano Zampini cmapt[cp] = 2; 73534e84afc0SStefano Zampini cmapa[cp] = globidx; 73544e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73554e84afc0SStefano Zampini cp++; 73564e84afc0SStefano Zampini } else { 73579566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73589566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73599566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73609566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73619566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73629566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73634e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73649566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73659566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73674e84afc0SStefano Zampini rmapt[cp] = 1; 73684e84afc0SStefano Zampini cmapt[cp] = 2; 73694e84afc0SStefano Zampini cmapa[cp] = globidx; 73704e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73714e84afc0SStefano Zampini cp++; 73729566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73739566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73749566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73759566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73769566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73779566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73784e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73799566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73809566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73814e84afc0SStefano Zampini rmapt[cp] = 2; 73824e84afc0SStefano Zampini rmapa[cp] = p->garray; 73834e84afc0SStefano Zampini cmapt[cp] = 2; 73844e84afc0SStefano Zampini cmapa[cp] = globidx; 73854e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73864e84afc0SStefano Zampini cp++; 73874e84afc0SStefano Zampini } 73884e84afc0SStefano Zampini break; 73894e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73909566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73914e84afc0SStefano Zampini /* P is product->B */ 73929566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73939566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73949566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73959566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73969566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73979566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73989566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73994e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74009566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74019566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 74034e84afc0SStefano Zampini rmapt[cp] = 2; 74044e84afc0SStefano Zampini rmapa[cp] = globidx; 74054e84afc0SStefano Zampini cmapt[cp] = 2; 74064e84afc0SStefano Zampini cmapa[cp] = globidx; 74074e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74084e84afc0SStefano Zampini cp++; 74094e84afc0SStefano Zampini if (mmdata->P_oth) { 74109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74119566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7412f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74139566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74149566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74159566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74169566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74189566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74199566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74204e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74219566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74229566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74234e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74244e84afc0SStefano Zampini cp++; 74259566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74269566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74279566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74289566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74299566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74309566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74314e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74329566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74339566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74344e84afc0SStefano Zampini rmapt[cp] = 2; 74354e84afc0SStefano Zampini rmapa[cp] = globidx; 74364e84afc0SStefano Zampini cmapt[cp] = 2; 74374e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74384e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74394e84afc0SStefano Zampini cp++; 74404e84afc0SStefano Zampini } 74414e84afc0SStefano Zampini break; 7442d71ae5a4SJacob Faibussowitsch default: 7443d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74444e84afc0SStefano Zampini } 74454e84afc0SStefano Zampini /* sanity check */ 74469371c9d4SSatish Balay if (size > 1) 74479371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74484e84afc0SStefano Zampini 74499566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7450ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7451ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7452ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7453ddea5d60SJunchao Zhang } 74544e84afc0SStefano Zampini mmdata->cp = cp; 74554e84afc0SStefano Zampini C->product->data = mmdata; 74564e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74574e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74584e84afc0SStefano Zampini 7459c215019aSStefano Zampini /* memory type */ 7460c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7462d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7464c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7465d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74663214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7467c215019aSStefano Zampini 74684e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7469ddea5d60SJunchao Zhang 7470ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7471ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7472ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7473ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7474ddea5d60SJunchao Zhang */ 74754e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74764e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74774e84afc0SStefano Zampini if (mptmp[cp]) continue; 7478ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74794e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74804e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74814e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74824e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74834e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74844e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74854e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74864e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7487ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7488ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74894e84afc0SStefano Zampini } 74904e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74914e84afc0SStefano Zampini } 7492ddea5d60SJunchao Zhang 7493ddea5d60SJunchao Zhang /* 7494ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7495ddea5d60SJunchao Zhang 7496ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7497ddea5d60SJunchao Zhang 7498d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7499ddea5d60SJunchao Zhang 7500ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7501ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7502ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7503ddea5d60SJunchao Zhang 7504ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7505da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7506ddea5d60SJunchao Zhang */ 75079566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7509ddea5d60SJunchao Zhang 7510ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7511ddea5d60SJunchao Zhang if (hasoffproc) { 75124e84afc0SStefano Zampini PetscSF msf; 75134e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75144e84afc0SStefano Zampini 75159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7518ddea5d60SJunchao Zhang 75194e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75204e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75214e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75224e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7523ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75244e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75254e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75264e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75274e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75284e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75294e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75304e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75314e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75324e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75334e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75344e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75354e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75364e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7537ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75384e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75394e84afc0SStefano Zampini *coi++ = gr; 75404e84afc0SStefano Zampini *idxoff++ = j; 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75434e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75444e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75454e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75464e84afc0SStefano Zampini } else { /* offdiag */ 75474e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75484e84afc0SStefano Zampini } 75494e84afc0SStefano Zampini ncoo_o += nz; 7550ddea5d60SJunchao Zhang } else { /* this is a local row */ 75514e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75524e84afc0SStefano Zampini } 75534e84afc0SStefano Zampini } 75544e84afc0SStefano Zampini } 75554e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75564e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75574e84afc0SStefano Zampini } 75584e84afc0SStefano Zampini 75599566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75606497c311SBarry Smith PetscInt incoo_o; 75616497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75626497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75639566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75649566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75654e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75679566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75689566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75699566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75709566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75719566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7572ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75739566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75744e84afc0SStefano Zampini coo_i = coo_i2; 75754e84afc0SStefano Zampini coo_j = coo_j2; 75764e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75774e84afc0SStefano Zampini ncoo = ncoo_d; 75789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7579c215019aSStefano Zampini 75809566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75819566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75829566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75834e84afc0SStefano Zampini } 7584c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75854e84afc0SStefano Zampini 7586ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75874e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75884e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75894e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75904e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75914e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75924e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75934e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75944e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75954e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75964e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75974e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75984e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75994e84afc0SStefano Zampini 76004e84afc0SStefano Zampini if (mptmp[cp]) continue; 7601ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7602ddea5d60SJunchao Zhang /* fill coo_i */ 76034e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76044e84afc0SStefano Zampini const PetscInt gr = i + rs; 76054e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76064e84afc0SStefano Zampini } 7607ddea5d60SJunchao Zhang /* fill coo_j */ 7608ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7610ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7611ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7612ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76134e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76144e84afc0SStefano Zampini } 76154e84afc0SStefano Zampini ncoo_d += mm->nz; 7616ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76174e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76184e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76194e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76204e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7621ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76224e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7623ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76244e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76254e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76264e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7627ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76284e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76294e84afc0SStefano Zampini } 76304e84afc0SStefano Zampini ncoo_d += nz; 76314e84afc0SStefano Zampini } 76324e84afc0SStefano Zampini } 76334e84afc0SStefano Zampini } 76344e84afc0SStefano Zampini } 763548a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 763748a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7639ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76409566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76414e84afc0SStefano Zampini 76424e84afc0SStefano Zampini /* preallocate with COO data */ 76439566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76449566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76464e84afc0SStefano Zampini } 76474e84afc0SStefano Zampini 7648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7649d71ae5a4SJacob Faibussowitsch { 76504e84afc0SStefano Zampini Mat_Product *product = mat->product; 76514e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76524e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7653abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76544e84afc0SStefano Zampini #else 76554e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76564e84afc0SStefano Zampini #endif 76574e84afc0SStefano Zampini 76584e84afc0SStefano Zampini PetscFunctionBegin; 76594e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76604e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 766148a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 766265e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7663abb89eb1SStefano Zampini switch (product->type) { 7664abb89eb1SStefano Zampini case MATPRODUCT_AB: 7665abb89eb1SStefano Zampini if (product->api_user) { 7666d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7668d0609cedSBarry Smith PetscOptionsEnd(); 7669abb89eb1SStefano Zampini } else { 7670d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7672d0609cedSBarry Smith PetscOptionsEnd(); 7673abb89eb1SStefano Zampini } 7674abb89eb1SStefano Zampini break; 7675abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7676abb89eb1SStefano Zampini if (product->api_user) { 7677d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76789566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7679d0609cedSBarry Smith PetscOptionsEnd(); 7680abb89eb1SStefano Zampini } else { 7681d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76829566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7683d0609cedSBarry Smith PetscOptionsEnd(); 7684abb89eb1SStefano Zampini } 7685abb89eb1SStefano Zampini break; 7686abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7687abb89eb1SStefano Zampini if (product->api_user) { 7688d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7690d0609cedSBarry Smith PetscOptionsEnd(); 7691abb89eb1SStefano Zampini } else { 7692d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76939566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7694d0609cedSBarry Smith PetscOptionsEnd(); 7695abb89eb1SStefano Zampini } 7696abb89eb1SStefano Zampini break; 7697d71ae5a4SJacob Faibussowitsch default: 7698d71ae5a4SJacob Faibussowitsch break; 7699abb89eb1SStefano Zampini } 7700abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7701abb89eb1SStefano Zampini } 77024e84afc0SStefano Zampini #endif 77034e84afc0SStefano Zampini if (match) { 77044e84afc0SStefano Zampini switch (product->type) { 77054e84afc0SStefano Zampini case MATPRODUCT_AB: 77064e84afc0SStefano Zampini case MATPRODUCT_AtB: 7707d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7708d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7709d71ae5a4SJacob Faibussowitsch break; 7710d71ae5a4SJacob Faibussowitsch default: 7711d71ae5a4SJacob Faibussowitsch break; 77124e84afc0SStefano Zampini } 77134e84afc0SStefano Zampini } 77144e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77159566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771781824310SBarry Smith } 771898921bdaSJacob Faibussowitsch 771998921bdaSJacob Faibussowitsch /* 772072833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 772172833a62Smarkadams4 772272833a62Smarkadams4 n - the number of block indices in cc[] 772372833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 772472833a62Smarkadams4 */ 7725d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7726d71ae5a4SJacob Faibussowitsch { 772772833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 772872833a62Smarkadams4 const PetscInt *idx; 772972833a62Smarkadams4 773072833a62Smarkadams4 PetscFunctionBegin; 773172833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 773272833a62Smarkadams4 if (nidx) { 773372833a62Smarkadams4 cnt = 0; 773472833a62Smarkadams4 cc[cnt] = idx[0] / bs; 773572833a62Smarkadams4 for (j = 1; j < nidx; j++) { 773672833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 773772833a62Smarkadams4 } 773872833a62Smarkadams4 } 773972833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 774072833a62Smarkadams4 *n = cnt + 1; 77413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 774272833a62Smarkadams4 } 774372833a62Smarkadams4 774472833a62Smarkadams4 /* 774572833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 774672833a62Smarkadams4 774772833a62Smarkadams4 ncollapsed - the number of block indices 774872833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 774972833a62Smarkadams4 */ 7750d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7751d71ae5a4SJacob Faibussowitsch { 775272833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 775372833a62Smarkadams4 775472833a62Smarkadams4 PetscFunctionBegin; 775572833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 775672833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 775772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 775872833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77599371c9d4SSatish Balay cprevtmp = cprev; 77609371c9d4SSatish Balay cprev = merged; 77619371c9d4SSatish Balay merged = cprevtmp; 776272833a62Smarkadams4 } 776372833a62Smarkadams4 *ncollapsed = nprev; 776472833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 776672833a62Smarkadams4 } 776772833a62Smarkadams4 77682d776b49SBarry Smith /* 776972833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 777072833a62Smarkadams4 777172833a62Smarkadams4 Input Parameter: 777272833a62Smarkadams4 . Amat - matrix 777372833a62Smarkadams4 - symmetrize - make the result symmetric 777472833a62Smarkadams4 + scale - scale with diagonal 777572833a62Smarkadams4 777672833a62Smarkadams4 Output Parameter: 777772833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 777872833a62Smarkadams4 777972833a62Smarkadams4 */ 7780e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7781d71ae5a4SJacob Faibussowitsch { 778272833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 778372833a62Smarkadams4 MPI_Comm comm; 778472833a62Smarkadams4 Mat Gmat; 778572833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 778672833a62Smarkadams4 Mat a, b, c; 778772833a62Smarkadams4 MatType jtype; 778872833a62Smarkadams4 778972833a62Smarkadams4 PetscFunctionBegin; 779072833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 779172833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 779272833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 779372833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 779472833a62Smarkadams4 nloc = (Iend - Istart) / bs; 779572833a62Smarkadams4 779672833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 779772833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 779872833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 779972833a62Smarkadams4 780072833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 780172833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 780272833a62Smarkadams4 implementation */ 780372833a62Smarkadams4 if (bs > 1) { 780472833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 780572833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 780672833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 780772833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 780872833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 780972833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 781072833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78112cf69117Smarkadams4 MatScalar *aa, val, *AA; 78122cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78136497c311SBarry Smith 78149371c9d4SSatish Balay if (isseqaij) { 78159371c9d4SSatish Balay a = Amat; 78169371c9d4SSatish Balay b = NULL; 78179371c9d4SSatish Balay } else { 781872833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78199371c9d4SSatish Balay a = d->A; 78209371c9d4SSatish Balay b = d->B; 782172833a62Smarkadams4 } 782272833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 782332603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 782472833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78252cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 782659ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78276497c311SBarry Smith 782859ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 782959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 783059ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 783159ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 783272833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 783359ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 783459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 783559ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 783659ee9f9fSPierre Jolivet else { 783759ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 783859ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 783959ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 784072833a62Smarkadams4 } 784159ee9f9fSPierre Jolivet } 784259ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 784359ee9f9fSPierre Jolivet } 784459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 784572833a62Smarkadams4 if (!ok) { 784672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 784759ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 784872833a62Smarkadams4 goto old_bs; 784972833a62Smarkadams4 } 785072833a62Smarkadams4 } 785172833a62Smarkadams4 } 785272833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 785372833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 785472833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78552cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 785672833a62Smarkadams4 // diag 785772833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 785872833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78596497c311SBarry Smith 786072833a62Smarkadams4 ai = aseq->i; 786172833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 786272833a62Smarkadams4 aj = aseq->j + ai[brow]; 78636497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 786472833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 786572833a62Smarkadams4 val = 0; 7866e02fb3cdSMark Adams if (index_size == 0) { 78676497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 786872833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78696497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 787072833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 787172833a62Smarkadams4 } 787272833a62Smarkadams4 } 7873e02fb3cdSMark Adams } else { // use (index,index) value if provided 78746497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78756497c311SBarry Smith PetscInt ii = index[iii]; 7876e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78776497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78786497c311SBarry Smith PetscInt jj = index[jjj]; 7879cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7880e02fb3cdSMark Adams } 7881e02fb3cdSMark Adams } 7882e02fb3cdSMark Adams } 788359ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 788472833a62Smarkadams4 AA[k / bs] = val; 788572833a62Smarkadams4 } 788672833a62Smarkadams4 grow = Istart / bs + brow / bs; 788766521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 788872833a62Smarkadams4 } 788972833a62Smarkadams4 // off-diag 789072833a62Smarkadams4 if (ismpiaij) { 789172833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 789272833a62Smarkadams4 const PetscScalar *vals; 789372833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78946497c311SBarry Smith 789572833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 789672833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 789772833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78986497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 789959ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 790072833a62Smarkadams4 AA[k / bs] = 0; 790172833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 790272833a62Smarkadams4 } 790372833a62Smarkadams4 nc = ncols / bs; 790472833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7905e02fb3cdSMark Adams if (index_size == 0) { 79066497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 790772833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79086497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79096497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 791059ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 791172833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 791272833a62Smarkadams4 } 791372833a62Smarkadams4 } 791472833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 791572833a62Smarkadams4 } 7916e02fb3cdSMark Adams } else { // use (index,index) value if provided 79176497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79186497c311SBarry Smith PetscInt ii = index[iii]; 7919e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79206497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79216497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79226497c311SBarry Smith PetscInt jj = index[jjj]; 7923e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7924e02fb3cdSMark Adams } 7925e02fb3cdSMark Adams } 7926e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7927e02fb3cdSMark Adams } 7928e02fb3cdSMark Adams } 792972833a62Smarkadams4 grow = Istart / bs + brow / bs; 793066521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 793172833a62Smarkadams4 } 793272833a62Smarkadams4 } 793372833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 793472833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79352cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 793672833a62Smarkadams4 } else { 793772833a62Smarkadams4 const PetscScalar *vals; 793872833a62Smarkadams4 const PetscInt *idx; 793972833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 794072833a62Smarkadams4 old_bs: 794172833a62Smarkadams4 /* 794272833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 794372833a62Smarkadams4 */ 794472833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 794532603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 794672833a62Smarkadams4 if (isseqaij) { 794772833a62Smarkadams4 PetscInt max_d_nnz; 79486497c311SBarry Smith 794972833a62Smarkadams4 /* 795072833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 795172833a62Smarkadams4 */ 795272833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 795372833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 795472833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 795548a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 795672833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 795772833a62Smarkadams4 } else if (ismpiaij) { 795872833a62Smarkadams4 Mat Daij, Oaij; 795972833a62Smarkadams4 const PetscInt *garray; 796072833a62Smarkadams4 PetscInt max_d_nnz; 79616497c311SBarry Smith 796272833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 796372833a62Smarkadams4 /* 796472833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 796572833a62Smarkadams4 */ 796672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 796772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 796872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 796948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 797072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 797172833a62Smarkadams4 /* 797272833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 797372833a62Smarkadams4 */ 797472833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 797572833a62Smarkadams4 o_nnz[jj] = 0; 797672833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 797772833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 797872833a62Smarkadams4 o_nnz[jj] += ncols; 797972833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 798072833a62Smarkadams4 } 798172833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 798272833a62Smarkadams4 } 798372833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 798472833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 798572833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 798672833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 798772833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 798872833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 798972833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79906497c311SBarry Smith 799172833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 799272833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 799372833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 799472833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79956497c311SBarry Smith 799672833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 799772833a62Smarkadams4 } 799872833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 799972833a62Smarkadams4 } 800072833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 800172833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 800272833a62Smarkadams4 } 800372833a62Smarkadams4 } else { 80042d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80052d776b49SBarry Smith else { 80062d776b49SBarry Smith Gmat = Amat; 80072d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80082d776b49SBarry Smith } 80099371c9d4SSatish Balay if (isseqaij) { 80109371c9d4SSatish Balay a = Gmat; 80119371c9d4SSatish Balay b = NULL; 80129371c9d4SSatish Balay } else { 801372833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80149371c9d4SSatish Balay a = d->A; 80159371c9d4SSatish Balay b = d->B; 801672833a62Smarkadams4 } 80172d776b49SBarry Smith if (filter >= 0 || scale) { 80182d776b49SBarry Smith /* take absolute value of each entry */ 801972833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 802072833a62Smarkadams4 MatInfo info; 802172833a62Smarkadams4 PetscScalar *avals; 80226497c311SBarry Smith 802372833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 802472833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 802572833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 802672833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 802772833a62Smarkadams4 } 802872833a62Smarkadams4 } 80292d776b49SBarry Smith } 803072833a62Smarkadams4 if (symmetrize) { 8031b94d7dedSBarry Smith PetscBool isset, issym; 80326497c311SBarry Smith 8033b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8034b94d7dedSBarry Smith if (!isset || !issym) { 803572833a62Smarkadams4 Mat matTrans; 80366497c311SBarry Smith 803772833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80381fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 803972833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 804072833a62Smarkadams4 } 804172833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80422d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 804372833a62Smarkadams4 if (scale) { 804472833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 804572833a62Smarkadams4 Vec diag; 80466497c311SBarry Smith 804772833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 804872833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 804972833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 805072833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 805172833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 805272833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 805372833a62Smarkadams4 } 805472833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80552d776b49SBarry Smith if (filter >= 0) { 80562ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80572ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80582d776b49SBarry Smith } 805972833a62Smarkadams4 *a_Gmat = Gmat; 80603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 806172833a62Smarkadams4 } 806272833a62Smarkadams4 806372833a62Smarkadams4 /* 806498921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 806598921bdaSJacob Faibussowitsch */ 806698921bdaSJacob Faibussowitsch 806798921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80689566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80699566063dSJacob Faibussowitsch #undef PetscCall 80709371c9d4SSatish Balay #define PetscCall(...) \ 80719371c9d4SSatish Balay do { \ 80725f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 807398921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 807498921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 807598921bdaSJacob Faibussowitsch return; \ 807698921bdaSJacob Faibussowitsch } \ 807798921bdaSJacob Faibussowitsch } while (0) 807898921bdaSJacob Faibussowitsch 807998921bdaSJacob Faibussowitsch #undef SETERRQ 80809371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80819371c9d4SSatish Balay do { \ 808298921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 808398921bdaSJacob Faibussowitsch return; \ 808498921bdaSJacob Faibussowitsch } while (0) 808598921bdaSJacob Faibussowitsch 808698921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 808798921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 808898921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 808998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 809098921bdaSJacob Faibussowitsch #else 809198921bdaSJacob Faibussowitsch #endif 8092d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8093d71ae5a4SJacob Faibussowitsch { 809498921bdaSJacob Faibussowitsch Mat mat = *mmat; 809598921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 809698921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 809798921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 809898921bdaSJacob Faibussowitsch PetscScalar value; 809998921bdaSJacob Faibussowitsch 810098921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 810198921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81025f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 810398921bdaSJacob Faibussowitsch { 810498921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 810598921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 810698921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 810798921bdaSJacob Faibussowitsch 810898921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 810998921bdaSJacob Faibussowitsch Mat A = aij->A; 811098921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 811198921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 811298921bdaSJacob Faibussowitsch MatScalar *aa; 8113f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 811498921bdaSJacob Faibussowitsch Mat B = aij->B; 811598921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 811698921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 811798921bdaSJacob Faibussowitsch MatScalar *ba; 811898921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 811998921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 812098921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 812198921bdaSJacob Faibussowitsch 812298921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 812398921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 812498921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 812598921bdaSJacob Faibussowitsch 812698921bdaSJacob Faibussowitsch PetscFunctionBegin; 81279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 812998921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 813098921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81316bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 813298921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 813398921bdaSJacob Faibussowitsch row = im[i] - rstart; 813498921bdaSJacob Faibussowitsch lastcol1 = -1; 813598921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 813698921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 813798921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 813898921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 813998921bdaSJacob Faibussowitsch low1 = 0; 814098921bdaSJacob Faibussowitsch high1 = nrow1; 814198921bdaSJacob Faibussowitsch lastcol2 = -1; 814298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 814398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 814498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 814598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814698921bdaSJacob Faibussowitsch low2 = 0; 814798921bdaSJacob Faibussowitsch high2 = nrow2; 814898921bdaSJacob Faibussowitsch 814998921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 815098921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 815198921bdaSJacob Faibussowitsch else value = v[i + j * m]; 815298921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 815398921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 815498921bdaSJacob Faibussowitsch col = in[j] - cstart; 815598921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 815698921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 815798921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 815863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 815998921bdaSJacob Faibussowitsch } else { 816098921bdaSJacob Faibussowitsch if (mat->was_assembled) { 816148a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 816298921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8163eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 816498921bdaSJacob Faibussowitsch col--; 816598921bdaSJacob Faibussowitsch #else 816698921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 816798921bdaSJacob Faibussowitsch #endif 8168f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8169eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 817098921bdaSJacob Faibussowitsch col = in[j]; 817198921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 817298921bdaSJacob Faibussowitsch B = aij->B; 817398921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81749371c9d4SSatish Balay bimax = b->imax; 81759371c9d4SSatish Balay bi = b->i; 81769371c9d4SSatish Balay bilen = b->ilen; 81779371c9d4SSatish Balay bj = b->j; 817898921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 817998921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 818098921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 818198921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 818298921bdaSJacob Faibussowitsch low2 = 0; 818398921bdaSJacob Faibussowitsch high2 = nrow2; 818498921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 818598921bdaSJacob Faibussowitsch ba = b->a; 818698921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 818798921bdaSJacob Faibussowitsch } 818898921bdaSJacob Faibussowitsch } else col = in[j]; 818998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 819098921bdaSJacob Faibussowitsch } 819198921bdaSJacob Faibussowitsch } 819298921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 819398921bdaSJacob Faibussowitsch if (roworiented) { 81949566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 819598921bdaSJacob Faibussowitsch } else { 81969566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 819798921bdaSJacob Faibussowitsch } 819898921bdaSJacob Faibussowitsch } 819998921bdaSJacob Faibussowitsch } 82009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 820298921bdaSJacob Faibussowitsch } 820398921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 820498921bdaSJacob Faibussowitsch } 820572833a62Smarkadams4 820698921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 820798921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 820898921bdaSJacob Faibussowitsch * original definitions */ 82099566063dSJacob Faibussowitsch #undef PetscCall 821098921bdaSJacob Faibussowitsch #undef SETERRQ 8211