1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663120d049SRichard Tran Mills 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168f74ef234SStefano Zampini } 169f74ef234SStefano Zampini 170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 171d71ae5a4SJacob Faibussowitsch { 17226bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17326bda2c4Sstefano_zampini 17426bda2c4Sstefano_zampini PetscFunctionBegin; 17546533700Sstefano_zampini if (mat->A) { 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1779566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17846533700Sstefano_zampini } 1793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18026bda2c4Sstefano_zampini } 18126bda2c4Sstefano_zampini 182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 183d71ae5a4SJacob Faibussowitsch { 18427d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18627d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18727d4218bSShri Abhyankar const PetscInt *ia, *ib; 188ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18927d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 19027d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19127d4218bSShri Abhyankar 19227d4218bSShri Abhyankar PetscFunctionBegin; 193f4259b30SLisandro Dalcin *keptrows = NULL; 194ce496241SStefano Zampini 19527d4218bSShri Abhyankar ia = a->i; 19627d4218bSShri Abhyankar ib = b->i; 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19927d4218bSShri Abhyankar for (i = 0; i < m; i++) { 20027d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20127d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20227d4218bSShri Abhyankar if (!na && !nb) { 20327d4218bSShri Abhyankar cnt++; 20427d4218bSShri Abhyankar goto ok1; 20527d4218bSShri Abhyankar } 206ce496241SStefano Zampini aa = aav + ia[i]; 20727d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20827d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20927d4218bSShri Abhyankar } 2108e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21127d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21227d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21327d4218bSShri Abhyankar } 21427d4218bSShri Abhyankar cnt++; 21527d4218bSShri Abhyankar ok1:; 21627d4218bSShri Abhyankar } 2171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 218ce496241SStefano Zampini if (!n0rows) { 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222ce496241SStefano Zampini } 2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22427d4218bSShri Abhyankar cnt = 0; 22527d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22627d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22727d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22827d4218bSShri Abhyankar if (!na && !nb) continue; 229ce496241SStefano Zampini aa = aav + ia[i]; 23027d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23127d4218bSShri Abhyankar if (aa[j] != 0.0) { 23227d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23327d4218bSShri Abhyankar goto ok2; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar } 2368e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23727d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23827d4218bSShri Abhyankar if (bb[j] != 0.0) { 23927d4218bSShri Abhyankar rows[cnt++] = rstart + i; 24027d4218bSShri Abhyankar goto ok2; 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar } 24327d4218bSShri Abhyankar ok2:; 24427d4218bSShri Abhyankar } 2459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24927d4218bSShri Abhyankar } 25027d4218bSShri Abhyankar 251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 252d71ae5a4SJacob Faibussowitsch { 25399e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25494342113SStefano Zampini PetscBool cong; 25599e65526SBarry Smith 25699e65526SBarry Smith PetscFunctionBegin; 2579566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25894342113SStefano Zampini if (Y->assembled && cong) { 2599566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 26099e65526SBarry Smith } else { 2619566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26299e65526SBarry Smith } 2633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26499e65526SBarry Smith } 26599e65526SBarry Smith 266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 267d71ae5a4SJacob Faibussowitsch { 268f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 269f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 270f1f41ecbSJed Brown 271f1f41ecbSJed Brown PetscFunctionBegin; 2720298fd71SBarry Smith *zrows = NULL; 2739566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 275f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2769566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278f1f41ecbSJed Brown } 279f1f41ecbSJed Brown 280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 281d71ae5a4SJacob Faibussowitsch { 2820716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 283a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2840716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2850716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2860716a85fSBarry Smith PetscReal *work; 287ce496241SStefano Zampini const PetscScalar *dummy; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 312857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3140716a85fSBarry Smith } else { 3151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3160716a85fSBarry Smith } 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 318857cbf51SRichard Tran Mills if (type == NORM_2) { 319a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 320857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 321a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3220716a85fSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3240716a85fSBarry Smith } 3250716a85fSBarry Smith 326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 327d71ae5a4SJacob Faibussowitsch { 328e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 329e52d2c62SBarry Smith IS sis, gis; 330e52d2c62SBarry Smith const PetscInt *isis, *igis; 331e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 332e52d2c62SBarry Smith 333e52d2c62SBarry Smith PetscFunctionBegin; 3349566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3359566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 340e52d2c62SBarry Smith 3419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 344e52d2c62SBarry Smith n = ngis + nsis; 3459566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3469566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 347e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3489566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 349e52d2c62SBarry Smith 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355e52d2c62SBarry Smith } 356e52d2c62SBarry Smith 357dd6ea824SBarry Smith /* 3580f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3600f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36272fa4726SStefano Zampini has an order N integer array but is fast to access. 3639e25ed09SBarry Smith */ 364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 365d71ae5a4SJacob Faibussowitsch { 36644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 367d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 368dbb450caSBarry Smith 3693a40ed3dSBarry Smith PetscFunctionBegin; 37008401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 372eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 373c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 374b1fc9764SSatish Balay #else 3759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 376905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 377b1fc9764SSatish Balay #endif 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3799e25ed09SBarry Smith } 3809e25ed09SBarry Smith 381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 382a8f51744SPierre Jolivet do { \ 383db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 384db4deed7SKarl Rupp else high1 = nrow1; \ 385fd3458f5SBarry Smith lastcol1 = col; \ 386fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 387fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 388fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 389fd3458f5SBarry Smith else low1 = t; \ 390ba4e3ef2SSatish Balay } \ 391fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 392fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 393fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3940c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3950c0d7e18SFande Kong ap1[_i] += value; \ 3960c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3970c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3989371c9d4SSatish Balay } else ap1[_i] = value; \ 39930770e4dSSatish Balay goto a_noinsert; \ 4000520107fSSatish Balay } \ 4010520107fSSatish Balay } \ 4029371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4039371c9d4SSatish Balay low1 = 0; \ 4049371c9d4SSatish Balay high1 = nrow1; \ 4059371c9d4SSatish Balay goto a_noinsert; \ 4069371c9d4SSatish Balay } \ 4079371c9d4SSatish Balay if (nonew == 1) { \ 4089371c9d4SSatish Balay low1 = 0; \ 4099371c9d4SSatish Balay high1 = nrow1; \ 4109371c9d4SSatish Balay goto a_noinsert; \ 4119371c9d4SSatish Balay } \ 41208401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 413fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4149371c9d4SSatish Balay N = nrow1++ - 1; \ 4159371c9d4SSatish Balay a->nz++; \ 4169371c9d4SSatish Balay high1++; \ 4170520107fSSatish Balay /* shift up all the later entries in this row */ \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 420fd3458f5SBarry Smith rp1[_i] = col; \ 421fd3458f5SBarry Smith ap1[_i] = value; \ 422e56f5c9eSBarry Smith A->nonzerostate++; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 467e56f5c9eSBarry Smith B->nonzerostate++; \ 46830770e4dSSatish Balay b_noinsert:; \ 469fd3458f5SBarry Smith bilen[row] = nrow2; \ 470a8f51744SPierre Jolivet } while (0) 47130770e4dSSatish Balay 472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 473d71ae5a4SJacob Faibussowitsch { 4742fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4752fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4762fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 477fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith PetscFunctionBegin; 4802fd7e33dSBarry Smith /* code only works for square matrices A */ 4812fd7e33dSBarry Smith 4822fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4842fd7e33dSBarry Smith row = row - diag; 4852fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4862fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4872fd7e33dSBarry Smith } 488fff043a9SJunchao Zhang if (l) { 4899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 492fff043a9SJunchao Zhang } 4932fd7e33dSBarry Smith 4942fd7e33dSBarry Smith /* diagonal part */ 495fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 499fff043a9SJunchao Zhang } 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* right of diagonal part */ 502fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 506fff043a9SJunchao Zhang } 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5082fd7e33dSBarry Smith } 5092fd7e33dSBarry Smith 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 511d71ae5a4SJacob Faibussowitsch { 51244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 513071fcb05SBarry Smith PetscScalar value = 0.0; 514d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 515d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 516ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5178a729477SBarry Smith 5180520107fSSatish Balay /* Some Variables required in the macro */ 5194ee7247eSSatish Balay Mat A = aij->A; 5204ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52157809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 522ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52330770e4dSSatish Balay Mat B = aij->B; 52430770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 525d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 526ce496241SStefano Zampini MatScalar *aa, *ba; 527fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5288d76821aSHong Zhang PetscInt nonew; 529a77337e4SBarry Smith MatScalar *ap1, *ap2; 5304ee7247eSSatish Balay 5313a40ed3dSBarry Smith PetscFunctionBegin; 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5348a729477SBarry Smith for (i = 0; i < m; i++) { 5355ef9f2a5SBarry Smith if (im[i] < 0) continue; 53608401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5374b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5384b0e389bSBarry Smith row = im[i] - rstart; 539fd3458f5SBarry Smith lastcol1 = -1; 5408e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5418e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 542fd3458f5SBarry Smith rmax1 = aimax[row]; 543fd3458f5SBarry Smith nrow1 = ailen[row]; 544fd3458f5SBarry Smith low1 = 0; 545fd3458f5SBarry Smith high1 = nrow1; 546fd3458f5SBarry Smith lastcol2 = -1; 5478e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5488e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 549fd3458f5SBarry Smith rmax2 = bimax[row]; 550d498b1e9SBarry Smith nrow2 = bilen[row]; 551fd3458f5SBarry Smith low2 = 0; 552fd3458f5SBarry Smith high2 = nrow2; 553fd3458f5SBarry Smith 5541eb62cbbSBarry Smith for (j = 0; j < n; j++) { 555071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 556c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 557fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 558fd3458f5SBarry Smith col = in[j] - cstart; 5598d76821aSHong Zhang nonew = a->nonew; 560d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 561f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 562f7d195e4SLawrence Mitchell continue; 563f7d195e4SLawrence Mitchell } else { 564f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 565227d817aSBarry Smith if (mat->was_assembled) { 56648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 568eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 569fa46199cSSatish Balay col--; 570b1fc9764SSatish Balay #else 571905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 572b1fc9764SSatish Balay #endif 573fff043a9SJunchao Zhang if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */ 5749566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5754b0e389bSBarry Smith col = in[j]; 5769bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 577f9508a3cSSatish Balay B = aij->B; 578f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5799371c9d4SSatish Balay bimax = b->imax; 5809371c9d4SSatish Balay bi = b->i; 5819371c9d4SSatish Balay bilen = b->ilen; 5829371c9d4SSatish Balay bj = b->j; 5839371c9d4SSatish Balay ba = b->a; 584d498b1e9SBarry Smith rp2 = bj + bi[row]; 585d498b1e9SBarry Smith ap2 = ba + bi[row]; 586d498b1e9SBarry Smith rmax2 = bimax[row]; 587d498b1e9SBarry Smith nrow2 = bilen[row]; 588d498b1e9SBarry Smith low2 = 0; 589d498b1e9SBarry Smith high2 = nrow2; 590d0f46423SBarry Smith bm = aij->B->rmap->n; 591f9508a3cSSatish Balay ba = b->a; 592d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 5930587a0fcSBarry Smith if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) { 5949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5960587a0fcSBarry Smith } 597c48de900SBarry Smith } else col = in[j]; 5988d76821aSHong Zhang nonew = b->nonew; 599d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6001eb62cbbSBarry Smith } 6011eb62cbbSBarry Smith } 6025ef9f2a5SBarry Smith } else { 60328b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60490f02eecSBarry Smith if (!aij->donotstash) { 6055080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 606d36fbae8SSatish Balay if (roworiented) { 6078e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 608d36fbae8SSatish Balay } else { 6098e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6104b0e389bSBarry Smith } 6111eb62cbbSBarry Smith } 6128a729477SBarry Smith } 61390f02eecSBarry Smith } 6145519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6178a729477SBarry Smith } 6188a729477SBarry Smith 6192b08fdbeSandi selinger /* 620904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6212b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 622904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6232b08fdbeSandi selinger */ 624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 625d71ae5a4SJacob Faibussowitsch { 626904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 627904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6284cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 629904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 630904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 631904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 632904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 633904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6346dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 635904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 636904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 637904d1e70Sandi selinger 638904d1e70Sandi selinger PetscFunctionBegin; 639904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 640904d1e70Sandi selinger for (j = 0; j < am; j++) { 641904d1e70Sandi selinger dnz = onz = 0; 642904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6436dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 644904d1e70Sandi selinger /* If column is in the diagonal */ 645904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 646904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 647904d1e70Sandi selinger dnz++; 648904d1e70Sandi selinger } else { /* off-diagonal entries */ 649904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 650904d1e70Sandi selinger onz++; 651904d1e70Sandi selinger } 652904d1e70Sandi selinger } 653904d1e70Sandi selinger ailen[j] = dnz; 654904d1e70Sandi selinger bilen[j] = onz; 655904d1e70Sandi selinger } 6563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 657904d1e70Sandi selinger } 658904d1e70Sandi selinger 659904d1e70Sandi selinger /* 660904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 661904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6621de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6631de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6641de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 665904d1e70Sandi selinger */ 666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 667d71ae5a4SJacob Faibussowitsch { 6683a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6693a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6704cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 671e9ede7d0Sandi selinger Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data; 6723a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6733a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6743a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6753a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6763a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6776dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6781de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 679904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 680904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6813a063d27Sandi selinger 6823a063d27Sandi selinger PetscFunctionBegin; 6833a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6843a063d27Sandi selinger for (j = 0; j < am; j++) { 685904d1e70Sandi selinger dnz_row = onz_row = 0; 686904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 687904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 688e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 689e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 690ae8e66a0Sandi selinger /* If column is in the diagonal */ 6913a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 692904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 693904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 694904d1e70Sandi selinger dnz_row++; 695ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 696904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 697904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 698904d1e70Sandi selinger onz_row++; 6993a063d27Sandi selinger } 7003a063d27Sandi selinger } 701904d1e70Sandi selinger ailen[j] = dnz_row; 702904d1e70Sandi selinger bilen[j] = onz_row; 7033a063d27Sandi selinger } 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7053a063d27Sandi selinger } 7063a063d27Sandi selinger 707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 708d71ae5a4SJacob Faibussowitsch { 709b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 710d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 711d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 712b49de8d1SLois Curfman McInnes 7133a40ed3dSBarry Smith PetscFunctionBegin; 714b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71785835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 718b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 719b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 72054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 722b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 723b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7249566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 725fa852ad4SSatish Balay } else { 72648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 728eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 729fa46199cSSatish Balay col--; 730b1fc9764SSatish Balay #else 731905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 732b1fc9764SSatish Balay #endif 733e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73448a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 737b49de8d1SLois Curfman McInnes } 7383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 739b49de8d1SLois Curfman McInnes } 740bc5ccf88SSatish Balay 741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 742d71ae5a4SJacob Faibussowitsch { 743bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 744b1d57f15SBarry Smith PetscInt nstash, reallocs; 745bc5ccf88SSatish Balay 746bc5ccf88SSatish Balay PetscFunctionBegin; 7473ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 748bc5ccf88SSatish Balay 7499566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7509566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7519566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 753bc5ccf88SSatish Balay } 754bc5ccf88SSatish Balay 755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 756d71ae5a4SJacob Faibussowitsch { 757bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 758b1d57f15SBarry Smith PetscMPIInt n; 759b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 760e44c0bd4SBarry Smith PetscInt *row, *col; 761ace3abfcSBarry Smith PetscBool other_disassembled; 76287828ca2SBarry Smith PetscScalar *val; 763bc5ccf88SSatish Balay 76491c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7656e111a19SKarl Rupp 766bc5ccf88SSatish Balay PetscFunctionBegin; 7674cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 768a2d1c673SSatish Balay while (1) { 7699566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 770a2d1c673SSatish Balay if (!flg) break; 771a2d1c673SSatish Balay 772bc5ccf88SSatish Balay for (i = 0; i < n;) { 773bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7742205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7752205254eSKarl Rupp if (row[j] != rstart) break; 7762205254eSKarl Rupp } 777bc5ccf88SSatish Balay if (j < n) ncols = j - i; 778bc5ccf88SSatish Balay else ncols = n - i; 779bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 781bc5ccf88SSatish Balay i = j; 782bc5ccf88SSatish Balay } 783bc5ccf88SSatish Balay } 7849566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 785bc5ccf88SSatish Balay } 7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 787c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7889ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7899ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7919566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7929ecce9b1SRichard Tran Mills } 793e2cf4d64SStefano Zampini #endif 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 796bc5ccf88SSatish Balay 797bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 798071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 799bc5ccf88SSatish Balay /* 800bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 801bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 802bc5ccf88SSatish Balay */ 803bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8045f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80535cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8069566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 807ad59fb31SSatish Balay } 808ad59fb31SSatish Balay } 80948a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8109566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 812c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 813e2cf4d64SStefano Zampini #endif 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 816bc5ccf88SSatish Balay 8179566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8182205254eSKarl Rupp 819f4259b30SLisandro Dalcin aij->rowvalues = NULL; 820a30b2313SHong Zhang 8219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 822e56f5c9eSBarry Smith 8234f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8244f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 825e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 827e56f5c9eSBarry Smith } 8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 829c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 830e2cf4d64SStefano Zampini #endif 8313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 832bc5ccf88SSatish Balay } 833bc5ccf88SSatish Balay 834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 835d71ae5a4SJacob Faibussowitsch { 83644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8373a40ed3dSBarry Smith 8383a40ed3dSBarry Smith PetscFunctionBegin; 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8421eb62cbbSBarry Smith } 8431eb62cbbSBarry Smith 844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 845d71ae5a4SJacob Faibussowitsch { 8461b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8471b1dd7adSMatthew G. Knepley PetscInt *lrows; 8486e520ac8SStefano Zampini PetscInt r, len; 849*9939a2d1SBarry Smith PetscBool cong; 8501eb62cbbSBarry Smith 8513a40ed3dSBarry Smith PetscFunctionBegin; 8526e520ac8SStefano Zampini /* get locally owned rows */ 8539566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8549566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 85597b48c8fSBarry Smith /* fix right hand side if needed */ 85697b48c8fSBarry Smith if (x && b) { 8571b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8581b1dd7adSMatthew G. Knepley PetscScalar *bb; 8591b1dd7adSMatthew G. Knepley 86028b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8619566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8629566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8631b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86697b48c8fSBarry Smith } 867a92ad425SStefano Zampini 868a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8699566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8709566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 871a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 872a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 873a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 874a92ad425SStefano Zampini PetscInt nnwA, nnwB; 875a92ad425SStefano Zampini PetscBool nnzA, nnzB; 876a92ad425SStefano Zampini 877a92ad425SStefano Zampini nnwA = aijA->nonew; 878a92ad425SStefano Zampini nnwB = aijB->nonew; 879a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 880a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 881a92ad425SStefano Zampini if (!nnzA) { 8829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 883a92ad425SStefano Zampini aijA->nonew = 0; 884a92ad425SStefano Zampini } 885a92ad425SStefano Zampini if (!nnzB) { 8869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 887a92ad425SStefano Zampini aijB->nonew = 0; 888a92ad425SStefano Zampini } 889a92ad425SStefano Zampini /* Must zero here before the next loop */ 8909566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8919566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8921b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8931b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 894a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8959566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 896e2d53e46SBarry Smith } 897a92ad425SStefano Zampini aijA->nonew = nnwA; 898a92ad425SStefano Zampini aijB->nonew = nnwB; 8996eb55b6aSBarry Smith } else { 9009566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9019566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9026eb55b6aSBarry Smith } 9039566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9064f9cfa9eSBarry Smith 907*9939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 908*9939a2d1SBarry Smith if (!((Mat_SeqAIJ *)(mat->A->data))->keepnonzeropattern || !((Mat_SeqAIJ *)(mat->A->data))->nonew) { 909*9939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 910*9939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 911*9939a2d1SBarry Smith } 9123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9131eb62cbbSBarry Smith } 9141eb62cbbSBarry Smith 915ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 916d71ae5a4SJacob Faibussowitsch { 9179c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9185ba17502SJed Brown PetscMPIInt n = A->rmap->n; 919131c27b5Sprj- PetscInt i, j, r, m, len = 0; 92054bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 921131c27b5Sprj- PetscMPIInt p = 0; 92254bd4135SMatthew G. Knepley PetscSFNode *rrows; 92354bd4135SMatthew G. Knepley PetscSF sf; 9249c7c4993SBarry Smith const PetscScalar *xx; 925fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 926564f14d6SBarry Smith Vec xmask, lmask; 927564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 928564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 929564f14d6SBarry Smith PetscScalar *aa; 9309c7c4993SBarry Smith 9319c7c4993SBarry Smith PetscFunctionBegin; 93254bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93454bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93654bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93754bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 938aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9395ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9409566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9415ba17502SJed Brown } 94254bd4135SMatthew G. Knepley rrows[r].rank = p; 94354bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9449c7c4993SBarry Smith } 9459566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94754bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9489566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95154bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9529371c9d4SSatish Balay for (r = 0; r < n; ++r) 9539371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 954564f14d6SBarry Smith /* zero diagonal part of matrix */ 9559566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9564cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9579566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9589566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9599566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 96054bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9629566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 965a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 966a92ad425SStefano Zampini PetscBool cong; 967a92ad425SStefano Zampini 9689566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9709566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9719566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9739566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 974377aa5a1SBarry Smith } 9759566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9764cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 978564f14d6SBarry Smith ii = aij->i; 9798e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 980564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 981564f14d6SBarry Smith if (aij->compressedrow.use) { 982564f14d6SBarry Smith m = aij->compressedrow.nrows; 983564f14d6SBarry Smith ii = aij->compressedrow.i; 984564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 985564f14d6SBarry Smith for (i = 0; i < m; i++) { 986564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 987564f14d6SBarry Smith aj = aij->j + ii[i]; 988fff043a9SJunchao Zhang aa = aij_a + ii[i]; 989564f14d6SBarry Smith 990564f14d6SBarry Smith for (j = 0; j < n; j++) { 99125266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 992377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 993564f14d6SBarry Smith *aa = 0.0; 994564f14d6SBarry Smith } 995564f14d6SBarry Smith aa++; 996564f14d6SBarry Smith aj++; 997564f14d6SBarry Smith } 998564f14d6SBarry Smith ridx++; 999564f14d6SBarry Smith } 1000564f14d6SBarry Smith } else { /* do not use compressed row format */ 1001564f14d6SBarry Smith m = l->B->rmap->n; 1002564f14d6SBarry Smith for (i = 0; i < m; i++) { 1003564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1004564f14d6SBarry Smith aj = aij->j + ii[i]; 1005fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1006564f14d6SBarry Smith for (j = 0; j < n; j++) { 100725266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1008377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1009564f14d6SBarry Smith *aa = 0.0; 1010564f14d6SBarry Smith } 1011564f14d6SBarry Smith aa++; 1012564f14d6SBarry Smith aj++; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith } 1015564f14d6SBarry Smith } 1016a92ad425SStefano Zampini if (x && b) { 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1019377aa5a1SBarry Smith } 10209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10239566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10244f9cfa9eSBarry Smith 10254f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1026*9939a2d1SBarry Smith if (!((Mat_SeqAIJ *)(l->A->data))->nonew) { 10274f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10281c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10294f9cfa9eSBarry Smith } 10303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10319c7c4993SBarry Smith } 10329c7c4993SBarry Smith 1033ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1034d71ae5a4SJacob Faibussowitsch { 1035416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1036b1d57f15SBarry Smith PetscInt nt; 103719b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1038416022c9SBarry Smith 10393a40ed3dSBarry Smith PetscFunctionBegin; 10409566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104108401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1043296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1045296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10471eb62cbbSBarry Smith } 10481eb62cbbSBarry Smith 1049ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1050d71ae5a4SJacob Faibussowitsch { 1051bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1052bd0c2dcbSBarry Smith 1053bd0c2dcbSBarry Smith PetscFunctionBegin; 10549566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1056bd0c2dcbSBarry Smith } 1057bd0c2dcbSBarry Smith 1058ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1059d71ae5a4SJacob Faibussowitsch { 1060416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106101ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10623a40ed3dSBarry Smith 10633a40ed3dSBarry Smith PetscFunctionBegin; 10649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10659566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10669566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1069da3a660dSBarry Smith } 1070da3a660dSBarry Smith 1071ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1072d71ae5a4SJacob Faibussowitsch { 1073416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1074da3a660dSBarry Smith 10753a40ed3dSBarry Smith PetscFunctionBegin; 1076da3a660dSBarry Smith /* do nondiagonal part */ 10779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1078da3a660dSBarry Smith /* do local part */ 10799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10809613dc34SJunchao Zhang /* add partial results together */ 10819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1084da3a660dSBarry Smith } 1085da3a660dSBarry Smith 1086ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1087d71ae5a4SJacob Faibussowitsch { 10884f423910Svictorle MPI_Comm comm; 1089ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1090ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1091cd0d46ebSvictorle IS Me, Notme; 1092b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109354d735aeSStefano Zampini PetscBool lf; 1094b1d57f15SBarry Smith PetscMPIInt size; 1095cd0d46ebSvictorle 1096cd0d46ebSvictorle PetscFunctionBegin; 109742e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10989566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10991c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11003ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11033ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110442e5f5b4Svictorle 11057dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11069566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11079566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1109cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1110cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11119566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11129566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11139566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111466501d38Svictorle Aoff = Aoffs[0]; 11159566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111666501d38Svictorle Boff = Boffs[0]; 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11189566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11199566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11229566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1124cd0d46ebSvictorle } 1125cd0d46ebSvictorle 1126ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f) 1127d71ae5a4SJacob Faibussowitsch { 1128a3bbdb47SHong Zhang PetscFunctionBegin; 11299566063dSJacob Faibussowitsch PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f)); 11303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1131a3bbdb47SHong Zhang } 1132a3bbdb47SHong Zhang 1133ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1134d71ae5a4SJacob Faibussowitsch { 1135416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1136da3a660dSBarry Smith 11373a40ed3dSBarry Smith PetscFunctionBegin; 1138da3a660dSBarry Smith /* do nondiagonal part */ 11399566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1140da3a660dSBarry Smith /* do local part */ 11419566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11429613dc34SJunchao Zhang /* add partial results together */ 11439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1146da3a660dSBarry Smith } 1147da3a660dSBarry Smith 11481eb62cbbSBarry Smith /* 11491eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11501eb62cbbSBarry Smith diagonal block 11511eb62cbbSBarry Smith */ 1152ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1153d71ae5a4SJacob Faibussowitsch { 1154416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11553a40ed3dSBarry Smith 11563a40ed3dSBarry Smith PetscFunctionBegin; 115708401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1158aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11599566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11611eb62cbbSBarry Smith } 11621eb62cbbSBarry Smith 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1164d71ae5a4SJacob Faibussowitsch { 1165052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11663a40ed3dSBarry Smith 11673a40ed3dSBarry Smith PetscFunctionBegin; 11689566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11699566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1171052efed2SBarry Smith } 1172052efed2SBarry Smith 1173ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1174d71ae5a4SJacob Faibussowitsch { 11758e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11768e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11778e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11783ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11792e5835c6SStefano Zampini const PetscScalar *aa, *ba; 118017a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 118117a3732bSBarry Smith PetscInt64 nz, hnz; 11823ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11833ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11843ea6fe3dSLisandro Dalcin PetscScalar *matvals; 118517a3732bSBarry Smith PetscMPIInt rank; 11868e2fed03SBarry Smith 11878e2fed03SBarry Smith PetscFunctionBegin; 11889566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11893ea6fe3dSLisandro Dalcin 11903ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11913ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11923ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11933ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11943ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11958e2fed03SBarry Smith nz = A->nz + B->nz; 11963ea6fe3dSLisandro Dalcin 11973ea6fe3dSLisandro Dalcin /* write matrix header */ 11980700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11999371c9d4SSatish Balay header[1] = M; 12009371c9d4SSatish Balay header[2] = N; 120117a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 120217a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 120338b83642SBarry Smith if (rank == 0) { 120438b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 120538b83642SBarry Smith else header[3] = (PetscInt)hnz; 120638b83642SBarry Smith } 12079566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12088e2fed03SBarry Smith 12093ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12113ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12139566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12148e2fed03SBarry Smith 12153ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12173ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12183ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12193ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12203ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12218e2fed03SBarry Smith } 12229371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12239371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12248e2fed03SBarry Smith } 122517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12269566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12279566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12288e2fed03SBarry Smith 12293ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12333ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12343ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12353ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12362e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12378e2fed03SBarry Smith } 12389371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12399371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12408e2fed03SBarry Smith } 12419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 124317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12459566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12468e2fed03SBarry Smith 12473ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12489566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12508e2fed03SBarry Smith } 12518e2fed03SBarry Smith 12529804daf3SBarry Smith #include <petscdraw.h> 1253ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1254d71ae5a4SJacob Faibussowitsch { 125544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 125632dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1257ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1258b0a32e0cSBarry Smith PetscViewer sviewer; 1259f3ef73ceSBarry Smith PetscViewerFormat format; 1260416022c9SBarry Smith 12613a40ed3dSBarry Smith PetscFunctionBegin; 12629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 126532077d6dSBarry Smith if (iascii) { 12669566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1267ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1268ef5fdb51SBarry Smith PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz; 12699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1271ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1272ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1273ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1274ef5fdb51SBarry Smith navg += nz[i]; 1275ef5fdb51SBarry Smith } 12769566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1277ef5fdb51SBarry Smith navg = navg / size; 12789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1280ef5fdb51SBarry Smith } 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1282456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12834e220ebcSLois Curfman McInnes MatInfo info; 12846335e310SSatish Balay PetscInt *inodes = NULL; 1285923f20ffSKris Buschelman 12869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12889566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1290923f20ffSKris Buschelman if (!inodes) { 12919371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12929371c9d4SSatish Balay (double)info.memory)); 12936831982aSBarry Smith } else { 12949371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12959371c9d4SSatish Balay (double)info.memory)); 12966831982aSBarry Smith } 12979566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12999566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13019566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13049566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1306fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1307923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13089566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1309923f20ffSKris Buschelman if (inodes) { 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1311d38fa0fbSBarry Smith } else { 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1313d38fa0fbSBarry Smith } 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13154aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131708480c60SBarry Smith } 13188e2fed03SBarry Smith } else if (isbinary) { 13198e2fed03SBarry Smith if (size == 1) { 13209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13219566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13228e2fed03SBarry Smith } else { 13239566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13248e2fed03SBarry Smith } 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132671e56450SStefano Zampini } else if (iascii && size == 1) { 13279566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13289566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13300f5bd95cSBarry Smith } else if (isdraw) { 1331b0a32e0cSBarry Smith PetscDraw draw; 1332ace3abfcSBarry Smith PetscBool isnull; 13339566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13349566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13353ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 133619bcc07fSBarry Smith } 133719bcc07fSBarry Smith 133871e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 133971e56450SStefano Zampini Mat A = NULL, Av; 134071e56450SStefano Zampini IS isrow, iscol; 13412ee70a88SLois Curfman McInnes 13429566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13449566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13459566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 134671e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 134771e56450SStefano Zampini /* 134871e56450SStefano Zampini Mat *AA, A = NULL, Av; 134971e56450SStefano Zampini IS isrow,iscol; 135071e56450SStefano Zampini 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1354dd400576SPatrick Sanan if (rank == 0) { 13559566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 135671e56450SStefano Zampini A = AA[0]; 135771e56450SStefano Zampini Av = AA[0]; 135895373324SBarry Smith } 13599566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136071e56450SStefano Zampini */ 13619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 136355843e3eSBarry Smith /* 136455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1365b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 136655843e3eSBarry Smith */ 13679566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1368dd400576SPatrick Sanan if (rank == 0) { 136948a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13709566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137195373324SBarry Smith } 13729566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 137495373324SBarry Smith } 13753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13761eb62cbbSBarry Smith } 13771eb62cbbSBarry Smith 1378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1379d71ae5a4SJacob Faibussowitsch { 1380ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1381416022c9SBarry Smith 13823a40ed3dSBarry Smith PetscFunctionBegin; 13839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 138748a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389416022c9SBarry Smith } 1390416022c9SBarry Smith 1391ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1392d71ae5a4SJacob Faibussowitsch { 139344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1394f4259b30SLisandro Dalcin Vec bb1 = NULL; 1395ace3abfcSBarry Smith PetscBool hasop; 13968a729477SBarry Smith 13973a40ed3dSBarry Smith PetscFunctionBegin; 1398a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1401a2b30743SBarry Smith } 1402a2b30743SBarry Smith 140348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14044e980039SJed Brown 1405c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1406da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14082798e883SHong Zhang its--; 1409da3a660dSBarry Smith } 14102798e883SHong Zhang 14112798e883SHong Zhang while (its--) { 14129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14142798e883SHong Zhang 1415c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14169566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14179566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14182798e883SHong Zhang 1419c14dc6b6SHong Zhang /* local sweep */ 14209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14212798e883SHong Zhang } 14223a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1423da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14249566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14252798e883SHong Zhang its--; 1426da3a660dSBarry Smith } 14272798e883SHong Zhang while (its--) { 14289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14302798e883SHong Zhang 1431c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14329566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14339566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1434c14dc6b6SHong Zhang 1435c14dc6b6SHong Zhang /* local sweep */ 14369566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14372798e883SHong Zhang } 14383a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1439da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14412798e883SHong Zhang its--; 1442da3a660dSBarry Smith } 14432798e883SHong Zhang while (its--) { 14449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14462798e883SHong Zhang 1447c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14489566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14499566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14502798e883SHong Zhang 1451c14dc6b6SHong Zhang /* local sweep */ 14529566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14532798e883SHong Zhang } 1454a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1455a7420bb7SBarry Smith Vec xx1; 1456a7420bb7SBarry Smith 14579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1459a7420bb7SBarry Smith 14609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1462a7420bb7SBarry Smith if (!mat->diag) { 14639566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14649566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1465a7420bb7SBarry Smith } 14669566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1467bd0c2dcbSBarry Smith if (hasop) { 14689566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1469bd0c2dcbSBarry Smith } else { 14709566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1471bd0c2dcbSBarry Smith } 14729566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1473887ee2caSBarry Smith 14749566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1475a7420bb7SBarry Smith 1476a7420bb7SBarry Smith /* local sweep */ 14779566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14789566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14799566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1480ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1481c14dc6b6SHong Zhang 14829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1483a0808db4SHong Zhang 14847b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14868a729477SBarry Smith } 1487a66be287SLois Curfman McInnes 1488ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1489d71ae5a4SJacob Faibussowitsch { 149072e6a0cfSJed Brown Mat aA, aB, Aperm; 149172e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 149272e6a0cfSJed Brown PetscScalar *aa, *ba; 149372e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 149472e6a0cfSJed Brown PetscSF rowsf, sf; 14950298fd71SBarry Smith IS parcolp = NULL; 149672e6a0cfSJed Brown PetscBool done; 149742e855d1Svictor 149842e855d1Svictor PetscFunctionBegin; 14999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15029566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 150372e6a0cfSJed Brown 150472e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 150872e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151172e6a0cfSJed Brown 151272e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 151672e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152072e6a0cfSJed Brown 15219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15239566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 152472e6a0cfSJed Brown 152572e6a0cfSJed Brown /* Find out where my gcols should go */ 15269566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15309566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15339566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 153472e6a0cfSJed Brown 15359566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15369566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15379566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 153872e6a0cfSJed Brown for (i = 0; i < m; i++) { 1539131c27b5Sprj- PetscInt row = rdest[i]; 1540131c27b5Sprj- PetscMPIInt rowner; 15419566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 154272e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1543131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1544131c27b5Sprj- PetscMPIInt cowner; 15459566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 154672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154772e6a0cfSJed Brown else onnz[i]++; 154872e6a0cfSJed Brown } 154972e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1550131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1551131c27b5Sprj- PetscMPIInt cowner; 15529566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 155372e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155472e6a0cfSJed Brown else onnz[i]++; 155572e6a0cfSJed Brown } 155672e6a0cfSJed Brown } 15579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15619566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 156272e6a0cfSJed Brown 15639566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 156672e6a0cfSJed Brown for (i = 0; i < m; i++) { 156772e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1568970468b0SJed Brown PetscInt j0, rowlen; 156972e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1570970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1571970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15729566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1573970468b0SJed Brown } 157472e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1575970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1576970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15779566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1578970468b0SJed Brown } 157972e6a0cfSJed Brown } 15809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15829566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15839566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15869566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15879566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15889566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15899566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159072e6a0cfSJed Brown *B = Aperm; 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159242e855d1Svictor } 159342e855d1Svictor 1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1595d71ae5a4SJacob Faibussowitsch { 1596c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1597c5e4d11fSDmitry Karpeev 1598c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15999566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1600c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1602c5e4d11fSDmitry Karpeev } 1603c5e4d11fSDmitry Karpeev 1604ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1605d71ae5a4SJacob Faibussowitsch { 1606a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1607a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16083966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1609a66be287SLois Curfman McInnes 16103a40ed3dSBarry Smith PetscFunctionBegin; 16114e220ebcSLois Curfman McInnes info->block_size = 1.0; 16129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16132205254eSKarl Rupp 16149371c9d4SSatish Balay isend[0] = info->nz_used; 16159371c9d4SSatish Balay isend[1] = info->nz_allocated; 16169371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16179371c9d4SSatish Balay isend[3] = info->memory; 16189371c9d4SSatish Balay isend[4] = info->mallocs; 16192205254eSKarl Rupp 16209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16212205254eSKarl Rupp 16229371c9d4SSatish Balay isend[0] += info->nz_used; 16239371c9d4SSatish Balay isend[1] += info->nz_allocated; 16249371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16259371c9d4SSatish Balay isend[3] += info->memory; 16269371c9d4SSatish Balay isend[4] += info->mallocs; 1627a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16284e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16294e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16304e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16314e220ebcSLois Curfman McInnes info->memory = isend[3]; 16324e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1633a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16341c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16352205254eSKarl Rupp 16364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1641a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16432205254eSKarl Rupp 16444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1649a66be287SLois Curfman McInnes } 16504e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16514e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16524e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1654a66be287SLois Curfman McInnes } 1655a66be287SLois Curfman McInnes 1656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1657d71ae5a4SJacob Faibussowitsch { 1658c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1659c74985f6SBarry Smith 16603a40ed3dSBarry Smith PetscFunctionBegin; 166112c028f9SKris Buschelman switch (op) { 1662512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 166312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 166428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1665a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 166612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16670ad02fcaSStefano Zampini case MAT_USE_INODES: 166812c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16691a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1670fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167312c028f9SKris Buschelman break; 167412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 167543674050SBarry Smith MatCheckPreallocated(A, 1); 16764e0d8c25SBarry Smith a->roworiented = flg; 16772205254eSKarl Rupp 16789566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168012c028f9SKris Buschelman break; 16818c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1682d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1683d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1684d71ae5a4SJacob Faibussowitsch break; 1685d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1686d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1687d71ae5a4SJacob Faibussowitsch break; 1688c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1689ffa07934SHong Zhang case MAT_SPD: 169077e54ba9SKris Buschelman case MAT_SYMMETRIC: 169177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1692bf108f30SBarry Smith case MAT_HERMITIAN: 1693bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1694b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1695b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1696b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 169777e54ba9SKris Buschelman break; 1698d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1699d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1700d71ae5a4SJacob Faibussowitsch break; 1701957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1702957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1703957cac9fSHong Zhang break; 1704d71ae5a4SJacob Faibussowitsch default: 1705d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 17063a40ed3dSBarry Smith } 17073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1708c74985f6SBarry Smith } 1709c74985f6SBarry Smith 1710d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1711d71ae5a4SJacob Faibussowitsch { 1712154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1714d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1715d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1716b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171739e00950SLois Curfman McInnes 17183a40ed3dSBarry Smith PetscFunctionBegin; 171928b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17207a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17217a0afa10SBarry Smith 172270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17237a0afa10SBarry Smith /* 17247a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17257a0afa10SBarry Smith */ 17267a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1727b1d57f15SBarry Smith PetscInt max = 1, tmp; 1728d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17297a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17302205254eSKarl Rupp if (max < tmp) max = tmp; 17317a0afa10SBarry Smith } 17329566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17337a0afa10SBarry Smith } 17347a0afa10SBarry Smith 1735aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1736abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173739e00950SLois Curfman McInnes 17389371c9d4SSatish Balay pvA = &vworkA; 17399371c9d4SSatish Balay pcA = &cworkA; 17409371c9d4SSatish Balay pvB = &vworkB; 17419371c9d4SSatish Balay pcB = &cworkB; 17429371c9d4SSatish Balay if (!v) { 17439371c9d4SSatish Balay pvA = NULL; 17449371c9d4SSatish Balay pvB = NULL; 17459371c9d4SSatish Balay } 17469371c9d4SSatish Balay if (!idx) { 17479371c9d4SSatish Balay pcA = NULL; 17489371c9d4SSatish Balay if (!v) pcB = NULL; 17499371c9d4SSatish Balay } 17509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17519566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1752154123eaSLois Curfman McInnes nztot = nzA + nzB; 1753154123eaSLois Curfman McInnes 175470f0671dSBarry Smith cmap = mat->garray; 1755154123eaSLois Curfman McInnes if (v || idx) { 1756154123eaSLois Curfman McInnes if (nztot) { 1757154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1758b1d57f15SBarry Smith PetscInt imark = -1; 1759154123eaSLois Curfman McInnes if (v) { 176070f0671dSBarry Smith *v = v_p = mat->rowvalues; 176139e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176270f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1763154123eaSLois Curfman McInnes else break; 1764154123eaSLois Curfman McInnes } 1765154123eaSLois Curfman McInnes imark = i; 176670f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176770f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1768154123eaSLois Curfman McInnes } 1769154123eaSLois Curfman McInnes if (idx) { 177070f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177170f0671dSBarry Smith if (imark > -1) { 1772ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177370f0671dSBarry Smith } else { 1774154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1776154123eaSLois Curfman McInnes else break; 1777154123eaSLois Curfman McInnes } 1778154123eaSLois Curfman McInnes imark = i; 177970f0671dSBarry Smith } 178070f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178170f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178239e00950SLois Curfman McInnes } 17833f97c4b0SBarry Smith } else { 1784f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1785f4259b30SLisandro Dalcin if (v) *v = NULL; 17861ca473b0SSatish Balay } 1787154123eaSLois Curfman McInnes } 178839e00950SLois Curfman McInnes *nz = nztot; 17899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17909566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179239e00950SLois Curfman McInnes } 179339e00950SLois Curfman McInnes 1794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1795d71ae5a4SJacob Faibussowitsch { 17967a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17973a40ed3dSBarry Smith 17983a40ed3dSBarry Smith PetscFunctionBegin; 179928b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18007a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180239e00950SLois Curfman McInnes } 180339e00950SLois Curfman McInnes 1804ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1805d71ae5a4SJacob Faibussowitsch { 1806855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1807ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1808d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1809329f5518SBarry Smith PetscReal sum = 0.0; 1810fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181104ca555eSLois Curfman McInnes 18123a40ed3dSBarry Smith PetscFunctionBegin; 181317699dbbSLois Curfman McInnes if (aij->size == 1) { 18149566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181537fa93a5SLois Curfman McInnes } else { 18169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 181804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1819fff043a9SJunchao Zhang v = amata; 182004ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18219371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18229371c9d4SSatish Balay v++; 182304ca555eSLois Curfman McInnes } 1824fff043a9SJunchao Zhang v = bmata; 182504ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18269371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18279371c9d4SSatish Balay v++; 182804ca555eSLois Curfman McInnes } 18291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18308f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18319566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18323a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1833329f5518SBarry Smith PetscReal *tmp, *tmp2; 1834b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 183704ca555eSLois Curfman McInnes *norm = 0.0; 18389371c9d4SSatish Balay v = amata; 18399371c9d4SSatish Balay jj = amat->j; 184004ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18419371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18429371c9d4SSatish Balay v++; 184304ca555eSLois Curfman McInnes } 18449371c9d4SSatish Balay v = bmata; 18459371c9d4SSatish Balay jj = bmat->j; 184604ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18479371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18489371c9d4SSatish Balay v++; 184904ca555eSLois Curfman McInnes } 18501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1851d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 185204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 185304ca555eSLois Curfman McInnes } 18549566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18573a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1858329f5518SBarry Smith PetscReal ntemp = 0.0; 1859d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18608e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186104ca555eSLois Curfman McInnes sum = 0.0; 186204ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18639371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18649371c9d4SSatish Balay v++; 186504ca555eSLois Curfman McInnes } 18668e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186704ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18689371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18699371c9d4SSatish Balay v++; 187004ca555eSLois Curfman McInnes } 1871515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187204ca555eSLois Curfman McInnes } 18731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1875ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187837fa93a5SLois Curfman McInnes } 18793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1880855ac2c5SLois Curfman McInnes } 1881855ac2c5SLois Curfman McInnes 1882ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1883d71ae5a4SJacob Faibussowitsch { 1884a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1885a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1886071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1887071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1888a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1889ce496241SStefano Zampini const MatScalar *pbv, *bv; 1890b7c46309SBarry Smith 18913a40ed3dSBarry Smith PetscFunctionBegin; 18927fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18939371c9d4SSatish Balay ma = A->rmap->n; 18949371c9d4SSatish Balay na = A->cmap->n; 18959371c9d4SSatish Balay mb = a->B->rmap->n; 18969371c9d4SSatish Balay nb = a->B->cmap->n; 18979371c9d4SSatish Balay ai = Aloc->i; 18989371c9d4SSatish Balay aj = Aloc->j; 18999371c9d4SSatish Balay bi = Bloc->i; 19009371c9d4SSatish Balay bj = Bloc->j; 1901fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190280bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190380bcc5a1SJed Brown PetscSFNode *oloc; 1904713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190580bcc5a1SJed Brown 19069566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190780bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19089566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1909cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191080bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191280bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191380bcc5a1SJed Brown /* map those to global */ 19149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19209566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1921d4bb536fSBarry Smith 19229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19259566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19279566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1928fc4dec0aSBarry Smith } else { 1929fc4dec0aSBarry Smith B = *matout; 19309566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1931fc4dec0aSBarry Smith } 1932b7c46309SBarry Smith 1933f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1934a8661f62Sandi selinger A_diag = a->A; 1935a8661f62Sandi selinger B_diag = &b->A; 1936a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1937a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1938a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1939a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1940f79cb1a0Sandi selinger 1941f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1942ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1943f79cb1a0Sandi selinger 19444cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1945a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19467fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19479566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1948f79cb1a0Sandi selinger 1949b7c46309SBarry Smith /* copy over the B part */ 19509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1952ce496241SStefano Zampini pbv = bv; 1953d0f46423SBarry Smith row = A->rmap->rstart; 19542205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195561a2fbbaSHong Zhang cols_tmp = cols; 1956da668accSHong Zhang for (i = 0; i < mb; i++) { 1957da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19589566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19592205254eSKarl Rupp row++; 1960720a2405SPierre Jolivet if (pbv) pbv += ncol; 1961720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1962b7c46309SBarry Smith } 19639566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1965fc73b1b3SBarry Smith 19669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1968cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19690de55854SLois Curfman McInnes *matout = B; 19700de55854SLois Curfman McInnes } else { 19719566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19720de55854SLois Curfman McInnes } 19733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1974b7c46309SBarry Smith } 1975b7c46309SBarry Smith 1976ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1977d71ae5a4SJacob Faibussowitsch { 19784b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19794b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1980b1d57f15SBarry Smith PetscInt s1, s2, s3; 1981a008b906SSatish Balay 19823a40ed3dSBarry Smith PetscFunctionBegin; 19839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19844b967eb1SSatish Balay if (rr) { 19859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198608401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19874b967eb1SSatish Balay /* Overlap communication with computation. */ 19889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1989a008b906SSatish Balay } 19904b967eb1SSatish Balay if (ll) { 19919566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199208401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1993dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19944b967eb1SSatish Balay } 19954b967eb1SSatish Balay /* scale the diagonal block */ 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19974b967eb1SSatish Balay 19984b967eb1SSatish Balay if (rr) { 19994b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2001dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20024b967eb1SSatish Balay } 20033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2004a008b906SSatish Balay } 2005a008b906SSatish Balay 2006ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2007d71ae5a4SJacob Faibussowitsch { 2008bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20093a40ed3dSBarry Smith 20103a40ed3dSBarry Smith PetscFunctionBegin; 20119566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2013bb5a7306SBarry Smith } 2014bb5a7306SBarry Smith 2015ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2016d71ae5a4SJacob Faibussowitsch { 2017d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2018d4bb536fSBarry Smith Mat a, b, c, d; 2019ace3abfcSBarry Smith PetscBool flg; 2020d4bb536fSBarry Smith 20213a40ed3dSBarry Smith PetscFunctionBegin; 20229371c9d4SSatish Balay a = matA->A; 20239371c9d4SSatish Balay b = matA->B; 20249371c9d4SSatish Balay c = matB->A; 20259371c9d4SSatish Balay d = matB->B; 2026d4bb536fSBarry Smith 20279566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2031d4bb536fSBarry Smith } 2032d4bb536fSBarry Smith 2033ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2034d71ae5a4SJacob Faibussowitsch { 2035cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2036cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2037cb5b572fSBarry Smith 2038cb5b572fSBarry Smith PetscFunctionBegin; 203933f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204033f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2041cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2042cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2043cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2044cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2045cb5b572fSBarry Smith then copying the submatrices */ 20469566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2047cb5b572fSBarry Smith } else { 20489566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2050cb5b572fSBarry Smith } 20519566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2053cb5b572fSBarry Smith } 2054cb5b572fSBarry Smith 2055001ddc4fSHong Zhang /* 2056001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2057001ddc4fSHong Zhang have different nonzero structure. 2058001ddc4fSHong Zhang */ 2059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2060d71ae5a4SJacob Faibussowitsch { 2061001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206295b7e79eSJed Brown 206395b7e79eSJed Brown PetscFunctionBegin; 206495b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206595b7e79eSJed Brown for (i = 0; i < m; i++) { 20668e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2067001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2068001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206995b7e79eSJed Brown nnz[i] = 0; 207095b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2071001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2072001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207395b7e79eSJed Brown nnz[i]++; 207495b7e79eSJed Brown } 207595b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207695b7e79eSJed Brown } 20773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207895b7e79eSJed Brown } 207995b7e79eSJed Brown 2080001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2082d71ae5a4SJacob Faibussowitsch { 2083001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2084001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2085001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2086001ddc4fSHong Zhang 2087001ddc4fSHong Zhang PetscFunctionBegin; 20889566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2090001ddc4fSHong Zhang } 2091001ddc4fSHong Zhang 2092ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2093d71ae5a4SJacob Faibussowitsch { 2094ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2095ac90fabeSBarry Smith 2096ac90fabeSBarry Smith PetscFunctionBegin; 2097ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20989566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2100ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2102ac90fabeSBarry Smith } else { 21039f5f6813SShri Abhyankar Mat B; 21049f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2105d9d719b4SStefano Zampini 21069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21109566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21129566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21169566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21179566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2119ac90fabeSBarry Smith } 21203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2121ac90fabeSBarry Smith } 2122ac90fabeSBarry Smith 21232726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2124354c94deSBarry Smith 2125ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2126d71ae5a4SJacob Faibussowitsch { 21275f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21285f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2129354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2130354c94deSBarry Smith 21319566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21335f80ce2aSJacob Faibussowitsch } 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2135354c94deSBarry Smith } 2136354c94deSBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2148d71ae5a4SJacob Faibussowitsch { 214999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215099cafbc1SBarry Smith 215199cafbc1SBarry Smith PetscFunctionBegin; 21529566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215599cafbc1SBarry Smith } 215699cafbc1SBarry Smith 2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2158d71ae5a4SJacob Faibussowitsch { 2159c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2160475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2161475b8b61SHong Zhang PetscScalar *va, *vv; 2162475b8b61SHong Zhang Vec vB, vA; 2163475b8b61SHong Zhang const PetscScalar *vb; 2164c91732d9SHong Zhang 2165c91732d9SHong Zhang PetscFunctionBegin; 21669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 21679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2168475b8b61SHong Zhang 21699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2170c91732d9SHong Zhang if (idx) { 2171475b8b61SHong Zhang for (i = 0; i < m; i++) { 2172d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2173c91732d9SHong Zhang } 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang 21769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 21779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2179c91732d9SHong Zhang 21809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2182475b8b61SHong Zhang for (i = 0; i < m; i++) { 2183c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2184475b8b61SHong Zhang vv[i] = vb[i]; 2185c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2186475b8b61SHong Zhang } else { 2187475b8b61SHong Zhang vv[i] = va[i]; 21889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2189c91732d9SHong Zhang } 2190c91732d9SHong Zhang } 21919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2198c91732d9SHong Zhang } 2199c91732d9SHong Zhang 2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2201eede4a3fSMark Adams { 2202eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2203eede4a3fSMark Adams PetscInt m = A->rmap->n; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 2808a3bbdb47SHong Zhang MatIsSymmetric_MPIAIJ, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2876eede4a3fSMark Adams MatGetRowSumAbs_MPIAIJ}; 287736ce4990SBarry Smith 2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2879d71ae5a4SJacob Faibussowitsch { 28802e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28812e8a6d31SBarry Smith 28822e8a6d31SBarry Smith PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28849566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28862e8a6d31SBarry Smith } 28872e8a6d31SBarry Smith 2888ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2889d71ae5a4SJacob Faibussowitsch { 28902e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28912e8a6d31SBarry Smith 28922e8a6d31SBarry Smith PetscFunctionBegin; 28939566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28949566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28962e8a6d31SBarry Smith } 28978a729477SBarry Smith 2898d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2899d71ae5a4SJacob Faibussowitsch { 2900ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29015d2a9ed1SStefano Zampini PetscMPIInt size; 2902a23d5eceSKris Buschelman 2903a23d5eceSKris Buschelman PetscFunctionBegin; 2904ad79cf63SBarry Smith if (B->hash_active) { 2905aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2906ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2907ad79cf63SBarry Smith } 29089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2910899cda47SBarry Smith 2911cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2912eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2913cb7b82ddSBarry Smith #else 29149566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2915cb7b82ddSBarry Smith #endif 29169566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29189566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2919cb7b82ddSBarry Smith 29209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 29219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2926cb7b82ddSBarry Smith 2927ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2932899cda47SBarry Smith 29339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2935526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2936cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293715001458SStefano Zampini B->assembled = PETSC_FALSE; 29383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2939a23d5eceSKris Buschelman } 2940a23d5eceSKris Buschelman 2941ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2942d71ae5a4SJacob Faibussowitsch { 2943ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2944846b4da1SFande Kong 2945846b4da1SFande Kong PetscFunctionBegin; 2946846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2949846b4da1SFande Kong 2950846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2951eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2952846b4da1SFande Kong #else 29539566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2954846b4da1SFande Kong #endif 29559566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29579566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2958846b4da1SFande Kong 29599566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29609566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2961846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2962846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2963846b4da1SFande Kong B->assembled = PETSC_FALSE; 29643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2965846b4da1SFande Kong } 2966846b4da1SFande Kong 2967d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2968d71ae5a4SJacob Faibussowitsch { 2969d6dfbf8fSBarry Smith Mat mat; 2970416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2971d6dfbf8fSBarry Smith 29723a40ed3dSBarry Smith PetscFunctionBegin; 2973f4259b30SLisandro Dalcin *newmat = NULL; 29749566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29779566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2978273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2979e1b6402fSHong Zhang 2980d5f3da31SBarry Smith mat->factortype = matin->factortype; 2981501880eeSStefano Zampini mat->assembled = matin->assembled; 2982e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2983d6dfbf8fSBarry Smith 298417699dbbSLois Curfman McInnes a->size = oldmat->size; 298517699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2986e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2987e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2988501880eeSStefano Zampini a->rowindices = NULL; 2989501880eeSStefano Zampini a->rowvalues = NULL; 2990bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2991d6dfbf8fSBarry Smith 29929566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29939566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2994420957c1SBarry Smith if (matin->hash_active) { 2995420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2996420957c1SBarry Smith } else { 2997420957c1SBarry Smith mat->preallocated = matin->preallocated; 29982ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2999aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3000eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3001b1fc9764SSatish Balay #else 30029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3004b1fc9764SSatish Balay #endif 3005501880eeSStefano Zampini } else a->colmap = NULL; 30063f41c07dSBarry Smith if (oldmat->garray) { 3007b1d57f15SBarry Smith PetscInt len; 3008d0f46423SBarry Smith len = oldmat->B->cmap->n; 30099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30109566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3011501880eeSStefano Zampini } else a->garray = NULL; 3012d6dfbf8fSBarry Smith 30130de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30140de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30150de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3016aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3017aa624791SPierre Jolivet if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 30189566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30199566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3020420957c1SBarry Smith } 30219566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30228a729477SBarry Smith *newmat = mat; 30233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30248a729477SBarry Smith } 3025416022c9SBarry Smith 3026d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3027d71ae5a4SJacob Faibussowitsch { 302852f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 302952f91c60SVaclav Hapla 303052f91c60SVaclav Hapla PetscFunctionBegin; 303152f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303252f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3033c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30349566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303752f91c60SVaclav Hapla if (isbinary) { 30389566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 303952f91c60SVaclav Hapla } else if (ishdf5) { 304052f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30419566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304252f91c60SVaclav Hapla #else 304352f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304452f91c60SVaclav Hapla #endif 304552f91c60SVaclav Hapla } else { 304698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304752f91c60SVaclav Hapla } 30483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304952f91c60SVaclav Hapla } 305052f91c60SVaclav Hapla 3051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3052d71ae5a4SJacob Faibussowitsch { 30533ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30543ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30553ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30568fb81238SShri Abhyankar 30578fb81238SShri Abhyankar PetscFunctionBegin; 30589566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30598fb81238SShri Abhyankar 30603ea6fe3dSLisandro Dalcin /* read in matrix header */ 30619566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306208401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30639371c9d4SSatish Balay M = header[1]; 30649371c9d4SSatish Balay N = header[2]; 30659371c9d4SSatish Balay nz = header[3]; 306608401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306708401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 306808401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 306908ea439dSMark F. Adams 30703ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30719566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30723ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30733ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30743ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30778fb81238SShri Abhyankar 30783ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30799566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3080aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30818fb81238SShri Abhyankar 30823ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30859566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30869371c9d4SSatish Balay rowidxs[0] = 0; 30879371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 308838b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30891c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309008401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309138b83642SBarry Smith } 309238b83642SBarry Smith 30933ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30959566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30973ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30989566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30999566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31009566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31028fb81238SShri Abhyankar } 31038fb81238SShri Abhyankar 31043782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3105ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3106d71ae5a4SJacob Faibussowitsch { 31074aa3045dSJed Brown IS iscol_local; 3108c5e4d11fSDmitry Karpeev PetscBool isstride; 3109c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31103782ecc7SHong Zhang 31113782ecc7SHong Zhang PetscFunctionBegin; 31123782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31143782ecc7SHong Zhang 3115c5e4d11fSDmitry Karpeev if (isstride) { 3116c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31179566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31199566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3120c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3121c5e4d11fSDmitry Karpeev } 31223782ecc7SHong Zhang 31231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3124c5e4d11fSDmitry Karpeev if (gisstride) { 3125c5e4d11fSDmitry Karpeev PetscInt N; 31269566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31279566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31289566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31299566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3130c5e4d11fSDmitry Karpeev } else { 3131c5bfad50SMark F. Adams PetscInt cbs; 31329566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31339566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31349566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3135b79d0421SJed Brown } 31363782ecc7SHong Zhang 31373782ecc7SHong Zhang *isseq = iscol_local; 31383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3139c5e4d11fSDmitry Karpeev } 31408d2139bdSHong Zhang 3141ddfdf956SHong Zhang /* 31429c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31439c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3144ddfdf956SHong Zhang 3145ddfdf956SHong Zhang Input Parameters: 314627430b45SBarry Smith + mat - matrix 314727430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31489c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 314927430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3150ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315127430b45SBarry Smith 315227430b45SBarry Smith Output Parameters: 315327430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315427430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315527430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315627430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3157ddfdf956SHong Zhang */ 3158ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3159d71ae5a4SJacob Faibussowitsch { 3160040216a4SHong Zhang Vec x, cmap; 3161040216a4SHong Zhang const PetscInt *is_idx; 3162040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31639c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3164040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3165040216a4SHong Zhang Mat B = a->B; 3166040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3167a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31688b3fa1f7SHong Zhang MPI_Comm comm; 31693a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31703782ecc7SHong Zhang 31713782ecc7SHong Zhang PetscFunctionBegin; 31729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31748b3fa1f7SHong Zhang 3175ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31779566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31789566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31799566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31800a351717SHong Zhang 31819c988bcaSHong Zhang /* Get start indices */ 31829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3183ddfdf956SHong Zhang isstart -= ncols; 31849566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3185040216a4SHong Zhang 31869566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31879566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31889566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3190ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31918b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3192ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31939c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31948b3fa1f7SHong Zhang } 31959566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31979566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31988b3fa1f7SHong Zhang 31999c988bcaSHong Zhang /* Get iscol_d */ 32009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32019566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32029566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3203feb78a15SHong Zhang 32049c988bcaSHong Zhang /* Get isrow_d */ 32059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3206feb78a15SHong Zhang rstart = mat->rmap->rstart; 32079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32099c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3211feb78a15SHong Zhang 32129566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32139566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32149566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3215feb78a15SHong Zhang 32169c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3219ddfdf956SHong Zhang 32209566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322107250d77SHong Zhang 32229566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32239566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322464efcef9SHong Zhang 32259c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3226ddfdf956SHong Zhang /* off-process column indices */ 32279c988bcaSHong Zhang count = 0; 32289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3230feb78a15SHong Zhang 32319566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32329566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32338b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3234f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32359c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32361c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32371c645242SHong Zhang count++; 32388b3fa1f7SHong Zhang } 32398b3fa1f7SHong Zhang } 32409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324207250d77SHong Zhang 32439566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3244b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3245b6d9b4e0SHong Zhang 32469566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32479c988bcaSHong Zhang *garray = cmap1; 32489c988bcaSHong Zhang 32499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3253040216a4SHong Zhang } 3254040216a4SHong Zhang 3255b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3256d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3257d71ae5a4SJacob Faibussowitsch { 3258b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32591fd43edeSHong Zhang Mat M = NULL; 32603b00a383SHong Zhang MPI_Comm comm; 3261b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32623b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3263b20e2604SHong Zhang PetscInt n; 32643b00a383SHong Zhang 32653b00a383SHong Zhang PetscFunctionBegin; 32669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32673b00a383SHong Zhang 32683b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3269b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327128b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32723b00a383SHong Zhang 32739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327428b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32753b00a383SHong Zhang 32769566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327728b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32783b00a383SHong Zhang 3279b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3280b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32819566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32829566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328348a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32863b00a383SHong Zhang 32873b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32889c988bcaSHong Zhang const PetscInt *garray; 3289b20e2604SHong Zhang PetscInt BsubN; 32903b00a383SHong Zhang 3291b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32929566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32933b00a383SHong Zhang 3294b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32959566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32969566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32973b00a383SHong Zhang 32989c988bcaSHong Zhang /* Create submatrix M */ 32999566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33003b00a383SHong Zhang 3301b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3302b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33037cfce09cSHong Zhang 33049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3305b20e2604SHong Zhang n = asub->B->cmap->N; 3306b20e2604SHong Zhang if (BsubN > n) { 3307c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33087cfce09cSHong Zhang const PetscInt *idx; 33099c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33109566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33117cfce09cSHong Zhang 33129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33137cfce09cSHong Zhang j = 0; 33149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3315b20e2604SHong Zhang for (i = 0; i < n; i++) { 33167cfce09cSHong Zhang if (j >= BsubN) break; 33179c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33187cfce09cSHong Zhang 33199c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33207cfce09cSHong Zhang idx_new[i] = idx[j++]; 332198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33227cfce09cSHong Zhang } 33239566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33247cfce09cSHong Zhang 33259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33277cfce09cSHong Zhang 3328b20e2604SHong Zhang } else if (BsubN < n) { 332998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3330b20e2604SHong Zhang } 33317cfce09cSHong Zhang 33329566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3333b20e2604SHong Zhang *submat = M; 33343b00a383SHong Zhang 3335e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33369566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33383b00a383SHong Zhang 33399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33413b00a383SHong Zhang 33429566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33443b00a383SHong Zhang } 33453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33463b00a383SHong Zhang } 33473b00a383SHong Zhang 3348d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3349d71ae5a4SJacob Faibussowitsch { 33501358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33513782ecc7SHong Zhang PetscInt csize; 335218e627e3SHong Zhang PetscInt n, i, j, start, end; 33534a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33543782ecc7SHong Zhang MPI_Comm comm; 33553782ecc7SHong Zhang 33563782ecc7SHong Zhang PetscFunctionBegin; 3357bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3358a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33598f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3361d5761cdaSHong Zhang if (isrow_d) { 3362d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3363d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3364d5761cdaSHong Zhang } else { 33659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3366d5761cdaSHong Zhang if (iscol_local) { 3367d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3368d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3369d5761cdaSHong Zhang } 3370d5761cdaSHong Zhang } 33718f69fa7bSHong Zhang } else { 3372e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337318e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33753782ecc7SHong Zhang if (!n) { 337618e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33773782ecc7SHong Zhang } else { 33789566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33799566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3380ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33818f69fa7bSHong Zhang } 33823782ecc7SHong Zhang 3383e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338418e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338618e627e3SHong Zhang if (!n) { 338718e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 338818e627e3SHong Zhang } else { 33899566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33909566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 339118e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339218e627e3SHong Zhang } 339318e627e3SHong Zhang 33949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339618e627e3SHong Zhang sameRowDist = tsameDist[0]; 339718e627e3SHong Zhang } 339818e627e3SHong Zhang 339918e627e3SHong Zhang if (sameRowDist) { 3400b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34013b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34029566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3404b20e2604SHong Zhang } else { /* sameRowDist */ 34053b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34061358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34071358a193SHong Zhang PetscBool sorted; 34089566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34109566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 341108401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34121358a193SHong Zhang 34139566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34141358a193SHong Zhang if (sorted) { 34151358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34183782ecc7SHong Zhang } 34191358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342048c0d076SHong Zhang IS iscol_sub; 34219566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342248c0d076SHong Zhang if (iscol_sub) { 34239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342548c0d076SHong Zhang } 34261358a193SHong Zhang } 34271358a193SHong Zhang } 34281358a193SHong Zhang } 34293782ecc7SHong Zhang 3430bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34313782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34329566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343328b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34343782ecc7SHong Zhang } else { 343548a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34361358a193SHong Zhang } 34373782ecc7SHong Zhang 34389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34399566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34408f69fa7bSHong Zhang 3441b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34429566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3444b79d0421SJed Brown } 34453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34464aa3045dSJed Brown } 34474aa3045dSJed Brown 3448feb78a15SHong Zhang /*@C 344911a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3450feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3451feb78a15SHong Zhang 3452d083f849SBarry Smith Collective 3453feb78a15SHong Zhang 3454feb78a15SHong Zhang Input Parameters: 3455feb78a15SHong Zhang + comm - MPI communicator 3456feb78a15SHong Zhang . A - "diagonal" portion of matrix 3457b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34582ef1f0ffSBarry Smith - garray - global index of `B` columns 3459feb78a15SHong Zhang 3460feb78a15SHong Zhang Output Parameter: 34612ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 346227430b45SBarry Smith 3463feb78a15SHong Zhang Level: advanced 3464feb78a15SHong Zhang 3465feb78a15SHong Zhang Notes: 346611a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346711a5261eSBarry Smith 34682ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3469feb78a15SHong Zhang 34701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3471feb78a15SHong Zhang @*/ 3472d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3473d71ae5a4SJacob Faibussowitsch { 3474feb78a15SHong Zhang Mat_MPIAIJ *maij; 3475e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3476a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3477ce496241SStefano Zampini const PetscScalar *oa; 3478e489de8fSHong Zhang Mat Bnew; 3479feb78a15SHong Zhang PetscInt m, n, N; 34804ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3481feb78a15SHong Zhang 3482feb78a15SHong Zhang PetscFunctionBegin; 34839566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34849566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348508401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348637a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3487b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 348808401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3489feb78a15SHong Zhang 3490e489de8fSHong Zhang /* Get global columns of mat */ 34911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3492feb78a15SHong Zhang 34939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34944ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34954ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34964ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34974ab4d6f4SRichard Tran Mills 349837a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3499feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3500feb78a15SHong Zhang 3501feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3502feb78a15SHong Zhang 35039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3505feb78a15SHong Zhang 3506e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3507feb78a15SHong Zhang maij->A = A; 3508feb78a15SHong Zhang 3509a5348796SHong Zhang nz = oi[m]; 3510a5348796SHong Zhang for (i = 0; i < nz; i++) { 3511a5348796SHong Zhang col = oj[i]; 3512a5348796SHong Zhang oj[i] = garray[col]; 3513feb78a15SHong Zhang } 3514feb78a15SHong Zhang 3515e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35179566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3519e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3520e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3521e489de8fSHong Zhang maij->B = Bnew; 3522d5761cdaSHong Zhang 352308401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3524d5761cdaSHong Zhang 3525e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3526d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3527d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35289566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3529d5761cdaSHong Zhang 3530e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3531e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3532e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3533feb78a15SHong Zhang 3534a5348796SHong Zhang /* condense columns of maij->B */ 35359566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35389566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35399566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3541feb78a15SHong Zhang } 3542feb78a15SHong Zhang 3543ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35444aa3045dSJed Brown 3545d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3546d71ae5a4SJacob Faibussowitsch { 354798b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354885f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354998b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35501fd43edeSHong Zhang Mat M, Msub, B = a->B; 355198b658c4SHong Zhang MatScalar *aa; 355200e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3553a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355498b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355598b658c4SHong Zhang IS iscol_sub, iscmap; 355698b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355718e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3558a31a438cSHong Zhang MPI_Comm comm; 35597e2c5f70SBarry Smith 3560a0ff6018SBarry Smith PetscFunctionBegin; 35619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3562d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356428b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3566d5761cdaSHong Zhang 35679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356828b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3569d5761cdaSHong Zhang 35709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 357128b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3572d5761cdaSHong Zhang 35739566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3574d5761cdaSHong Zhang 3575d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35763b00a383SHong Zhang PetscBool flg; 35773b00a383SHong Zhang 35789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35799566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3580bcae8d28SHong Zhang 35813b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3582366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35839566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3584366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3586366a327dSHong Zhang if (allcolumns) { 3587366a327dSHong Zhang iscol_sub = iscol_local; 35889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35899566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3590366a327dSHong Zhang 35913b00a383SHong Zhang } else { 35921358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3593244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35978d2139bdSHong Zhang count = 0; 3598a31a438cSHong Zhang k = 0; 3599a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3600a31a438cSHong Zhang j = is_idx[i]; 3601a31a438cSHong Zhang if (j >= cstart && j < cend) { 3602a31a438cSHong Zhang /* diagonal part of mat */ 36038d2139bdSHong Zhang idx[count] = j; 3604366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36054a3daf6eSHong Zhang } else if (Bn) { 3606a31a438cSHong Zhang /* off-diagonal part of mat */ 3607a31a438cSHong Zhang if (j == garray[k]) { 36088d2139bdSHong Zhang idx[count] = j; 3609a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3610a31a438cSHong Zhang } else if (j > garray[k]) { 3611a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3612a31a438cSHong Zhang if (j == garray[k]) { 3613a31a438cSHong Zhang idx[count] = j; 3614a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36158d2139bdSHong Zhang } 36168d2139bdSHong Zhang } 36178d2139bdSHong Zhang } 36188d2139bdSHong Zhang } 36199566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36208d2139bdSHong Zhang 36219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36229566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36239566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3624b6d9b4e0SHong Zhang 36259566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3626a31a438cSHong Zhang } 36278b3fa1f7SHong Zhang 36283b00a383SHong Zhang /* (3) Create sequential Msub */ 36299566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3630d5761cdaSHong Zhang } 36318d2139bdSHong Zhang 36329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363398b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363498b658c4SHong Zhang ii = aij->i; 36359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3636a0ff6018SBarry Smith 3637a0ff6018SBarry Smith /* 3638a0ff6018SBarry Smith m - number of local rows 3639a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3640a0ff6018SBarry Smith rstart - first row in new global matrix generated 3641a0ff6018SBarry Smith */ 36429566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364398b658c4SHong Zhang 36443b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36453b00a383SHong Zhang /* (4) Create parallel newmat */ 364698b658c4SHong Zhang PetscMPIInt rank, size; 3647bcae8d28SHong Zhang PetscInt csize; 364898b658c4SHong Zhang 36499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 365100e6dbe6SBarry Smith 3652a0ff6018SBarry Smith /* 365300e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365400e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3655a0ff6018SBarry Smith */ 365600e6dbe6SBarry Smith 365700e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36596a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36609566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3661a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3662e2c4fddaSBarry Smith nlocal = m; 36636a6a5d1dSBarry Smith } else { 3664a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3665ab50ec6bSBarry Smith } 3666ab50ec6bSBarry Smith } else { 36676a6a5d1dSBarry Smith nlocal = csize; 36686a6a5d1dSBarry Smith } 36699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 367000e6dbe6SBarry Smith rstart = rend - nlocal; 3671aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367200e6dbe6SBarry Smith 367300e6dbe6SBarry Smith /* next, compute all the lengths */ 367498b658c4SHong Zhang jj = aij->j; 36759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367600e6dbe6SBarry Smith olens = dlens + m; 367700e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367800e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367900e6dbe6SBarry Smith olen = 0; 368000e6dbe6SBarry Smith dlen = 0; 368100e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368215b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368300e6dbe6SBarry Smith else dlen++; 368400e6dbe6SBarry Smith jj++; 368500e6dbe6SBarry Smith } 368600e6dbe6SBarry Smith olens[i] = olen; 368700e6dbe6SBarry Smith dlens[i] = dlen; 368800e6dbe6SBarry Smith } 3689b6d9b4e0SHong Zhang 36909566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36919566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369298b658c4SHong Zhang 36939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36969566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36979566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36989566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3699d5761cdaSHong Zhang 3700d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3701a0ff6018SBarry Smith M = *newmat; 37029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370308401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37049566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3705c48de900SBarry Smith /* 3706c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3707c48de900SBarry Smith rather than the slower MatSetValues(). 3708c48de900SBarry Smith */ 3709c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3710c48de900SBarry Smith M->assembled = PETSC_FALSE; 3711a0ff6018SBarry Smith } 3712548ecf4dSHong Zhang 37133b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371698b658c4SHong Zhang 371798b658c4SHong Zhang jj = aij->j; 37189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3719a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3720a0ff6018SBarry Smith row = rstart + i; 372100e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372215b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37239566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37249371c9d4SSatish Balay jj += nz; 37259371c9d4SSatish Balay aa += nz; 3726a0ff6018SBarry Smith } 37279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3729a0ff6018SBarry Smith 37309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3732fee21e36SBarry Smith 37339566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373498b658c4SHong Zhang 373598b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3736fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37373b00a383SHong Zhang *newmat = M; 37389566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub)); 37399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 374098b658c4SHong Zhang 37419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub)); 37429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374398b658c4SHong Zhang 37449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap)); 37459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3746bcae8d28SHong Zhang 3747bcae8d28SHong Zhang if (iscol_local) { 37489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local)); 37499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3750bcae8d28SHong Zhang } 375198b658c4SHong Zhang } 37523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3753a0ff6018SBarry Smith } 3754273d9f13SBarry Smith 3755df40acb1SHong Zhang /* 3756df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3757df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3758df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3759df40acb1SHong Zhang 376011a5261eSBarry Smith This requires a sequential iscol with all indices. 3761df40acb1SHong Zhang */ 3762d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3763d71ae5a4SJacob Faibussowitsch { 3764df40acb1SHong Zhang PetscMPIInt rank, size; 3765df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3766df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3767df40acb1SHong Zhang Mat M, Mreuse; 376898b658c4SHong Zhang MatScalar *aa, *vwork; 3769df40acb1SHong Zhang MPI_Comm comm; 3770df40acb1SHong Zhang Mat_SeqAIJ *aij; 37710b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3772df40acb1SHong Zhang 3773df40acb1SHong Zhang PetscFunctionBegin; 37749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3777df40acb1SHong Zhang 37780b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37799566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37810b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37821c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37830b27a90eSHong Zhang 3784df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378628b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37879566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3788df40acb1SHong Zhang } else { 37899566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3790df40acb1SHong Zhang } 3791df40acb1SHong Zhang 3792df40acb1SHong Zhang /* 3793df40acb1SHong Zhang m - number of local rows 3794df40acb1SHong Zhang n - number of columns (same on all processors) 3795df40acb1SHong Zhang rstart - first row in new global matrix generated 3796df40acb1SHong Zhang */ 37979566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37989566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3799df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3800df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3801df40acb1SHong Zhang ii = aij->i; 3802df40acb1SHong Zhang jj = aij->j; 3803df40acb1SHong Zhang 3804df40acb1SHong Zhang /* 3805df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3806df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3807df40acb1SHong Zhang */ 3808df40acb1SHong Zhang 3809df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3810df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38119566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3812df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3813df40acb1SHong Zhang nlocal = m; 3814df40acb1SHong Zhang } else { 3815df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3816df40acb1SHong Zhang } 3817df40acb1SHong Zhang } else { 3818df40acb1SHong Zhang nlocal = csize; 3819df40acb1SHong Zhang } 38209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3821df40acb1SHong Zhang rstart = rend - nlocal; 3822aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3823df40acb1SHong Zhang 3824df40acb1SHong Zhang /* next, compute all the lengths */ 38259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3826df40acb1SHong Zhang olens = dlens + m; 3827df40acb1SHong Zhang for (i = 0; i < m; i++) { 3828df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3829df40acb1SHong Zhang olen = 0; 3830df40acb1SHong Zhang dlen = 0; 3831df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3832df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3833df40acb1SHong Zhang else dlen++; 3834df40acb1SHong Zhang jj++; 3835df40acb1SHong Zhang } 3836df40acb1SHong Zhang olens[i] = olen; 3837df40acb1SHong Zhang dlens[i] = dlen; 3838df40acb1SHong Zhang } 38399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38419566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38429566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38439566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38449566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3845df40acb1SHong Zhang } else { 3846df40acb1SHong Zhang PetscInt ml, nl; 3847df40acb1SHong Zhang 3848df40acb1SHong Zhang M = *newmat; 38499566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 385008401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38519566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3852df40acb1SHong Zhang /* 3853df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3854df40acb1SHong Zhang rather than the slower MatSetValues(). 3855df40acb1SHong Zhang */ 3856df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3857df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3858df40acb1SHong Zhang } 38599566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3860df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3861df40acb1SHong Zhang ii = aij->i; 3862df40acb1SHong Zhang jj = aij->j; 38632e5835c6SStefano Zampini 38642e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3866df40acb1SHong Zhang for (i = 0; i < m; i++) { 3867df40acb1SHong Zhang row = rstart + i; 3868df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38699371c9d4SSatish Balay cwork = jj; 38708e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38719371c9d4SSatish Balay vwork = aa; 38728e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38739566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3874df40acb1SHong Zhang } 38759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3876df40acb1SHong Zhang 38779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3879df40acb1SHong Zhang *newmat = M; 3880df40acb1SHong Zhang 3881df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3882df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38839566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3885df40acb1SHong Zhang } 38863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3887df40acb1SHong Zhang } 3888df40acb1SHong Zhang 3889ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3890d71ae5a4SJacob Faibussowitsch { 38916a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3892899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3893ccd8e176SBarry Smith const PetscInt *JJ; 3894eeb24464SBarry Smith PetscBool nooffprocentries; 38956a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3896ccd8e176SBarry Smith 3897ccd8e176SBarry Smith PetscFunctionBegin; 3898aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3899899cda47SBarry Smith 39009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3902d0f46423SBarry Smith m = B->rmap->n; 3903d0f46423SBarry Smith cstart = B->cmap->rstart; 3904d0f46423SBarry Smith cend = B->cmap->rend; 3905d0f46423SBarry Smith rstart = B->rmap->rstart; 3906899cda47SBarry Smith 39079566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3908ccd8e176SBarry Smith 390976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39108f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3911ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39128e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 391308401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391408401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391508401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3916ecc77c7aSBarry Smith } 391776bd3646SJed Brown } 3918ecc77c7aSBarry Smith 39198f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3920b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39218e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3922ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3923ccd8e176SBarry Smith d = 0; 39240daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39250daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3926ccd8e176SBarry Smith } 3927ccd8e176SBarry Smith d_nnz[i] = d; 3928ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3929ccd8e176SBarry Smith } 39309566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39319566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3932ccd8e176SBarry Smith 39338f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3934ccd8e176SBarry Smith ii = i + rstart; 39358e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3936ccd8e176SBarry Smith } 3937eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3938eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3941eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3942ccd8e176SBarry Smith 39436a3d2595SBarry Smith /* count number of entries below block diagonal */ 39446a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39456a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39466a3d2595SBarry Smith Aij->ld = ld; 39476a3d2595SBarry Smith for (i = 0; i < m; i++) { 39486a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39496a3d2595SBarry Smith j = 0; 3950ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39516a3d2595SBarry Smith ld[i] = j; 3952720a2405SPierre Jolivet if (J) J += nnz; 39536a3d2595SBarry Smith } 39546a3d2595SBarry Smith 39559566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3957ccd8e176SBarry Smith } 3958ccd8e176SBarry Smith 39591eea217eSSatish Balay /*@ 396011a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3961ccd8e176SBarry Smith (the default parallel PETSc format). 3962ccd8e176SBarry Smith 3963d083f849SBarry Smith Collective 3964ccd8e176SBarry Smith 3965ccd8e176SBarry Smith Input Parameters: 3966a1661176SMatthew Knepley + B - the matrix 3967ccd8e176SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 39680daa03b5SJed Brown . j - the column indices for each local row (starts with zero) 3969ccd8e176SBarry Smith - v - optional values in the matrix 3970ccd8e176SBarry Smith 3971ccd8e176SBarry Smith Level: developer 3972ccd8e176SBarry Smith 397312251496SSatish Balay Notes: 39742ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39752ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397611a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397712251496SSatish Balay 39782ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397912251496SSatish Balay 3980a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3981a4bd8bc0SBarry Smith 3982a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3983a4bd8bc0SBarry Smith 3984a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3985a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3986a4bd8bc0SBarry Smith 398712251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398812251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3989c5e4d11fSDmitry Karpeev as shown 399027430b45SBarry Smith .vb 399127430b45SBarry Smith 1 0 0 399227430b45SBarry Smith 2 0 3 P0 399327430b45SBarry Smith ------- 399427430b45SBarry Smith 4 5 6 P1 399527430b45SBarry Smith 399627430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399727430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399827430b45SBarry Smith j = {0,0,2} [size = 3] 399927430b45SBarry Smith v = {1,2,3} [size = 3] 400027430b45SBarry Smith 400127430b45SBarry Smith Process1 [P1] rows_owned=[2] 400227430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400327430b45SBarry Smith j = {0,1,2} [size = 3] 400427430b45SBarry Smith v = {4,5,6} [size = 3] 400527430b45SBarry Smith .ve 400612251496SSatish Balay 4007fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4008a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4009ccd8e176SBarry Smith @*/ 4010d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4011d71ae5a4SJacob Faibussowitsch { 4012ccd8e176SBarry Smith PetscFunctionBegin; 4013cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4015ccd8e176SBarry Smith } 4016ccd8e176SBarry Smith 4017273d9f13SBarry Smith /*@C 401811a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4019273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4020273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 402120f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4022273d9f13SBarry Smith 4023d083f849SBarry Smith Collective 4024273d9f13SBarry Smith 4025273d9f13SBarry Smith Input Parameters: 40261c4f3114SJed Brown + B - the matrix 4027273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4028273d9f13SBarry Smith (same value is used for all local rows) 4029273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4030273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40312ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4032273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40333287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40343287b5eaSJed Brown the diagonal entry even if it is zero. 4035273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4036273d9f13SBarry Smith submatrix (same value is used for all local rows). 4037273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4038273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40392ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4040273d9f13SBarry Smith structure. The size of this array is equal to the number 4041273d9f13SBarry Smith of local rows, i.e 'm'. 4042273d9f13SBarry Smith 40432920cce0SJacob Faibussowitsch Example Usage: 404427430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404527430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404627430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404727430b45SBarry Smith as follows 404827430b45SBarry Smith 404927430b45SBarry Smith .vb 405027430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 405127430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405227430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405327430b45SBarry Smith ------------------------------------- 405427430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405527430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405627430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405727430b45SBarry Smith ------------------------------------- 405827430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405927430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 406027430b45SBarry Smith .ve 406127430b45SBarry Smith 406227430b45SBarry Smith This can be represented as a collection of submatrices as 406327430b45SBarry Smith .vb 406427430b45SBarry Smith A B C 406527430b45SBarry Smith D E F 406627430b45SBarry Smith G H I 406727430b45SBarry Smith .ve 406827430b45SBarry Smith 406927430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 407027430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 407127430b45SBarry Smith 407227430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407327430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407427430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407527430b45SBarry Smith 407627430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407727430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407827430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407927430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 408027430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 408127430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 408227430b45SBarry Smith 408320f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408420f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408527430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408620f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 408727430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408820f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408927430b45SBarry Smith .vb 409027430b45SBarry Smith proc0 dnz = 2, o_nz = 2 409127430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409227430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409327430b45SBarry Smith .ve 409420f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409527430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409627430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409727430b45SBarry Smith 34 values. 409827430b45SBarry Smith 409920f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 410027430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 410120f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410227430b45SBarry Smith .vb 410327430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410427430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410527430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410627430b45SBarry Smith .ve 410727430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410827430b45SBarry Smith hence pre-allocation is perfect. 410927430b45SBarry Smith 411027430b45SBarry Smith Level: intermediate 411127430b45SBarry Smith 411227430b45SBarry Smith Notes: 411349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411449a6f317SBarry Smith 411527430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41160598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4117651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4118273d9f13SBarry Smith 4119273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4120273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4121273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4122273d9f13SBarry Smith 4123273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4124a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4125a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4126a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4127a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4128a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4129a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4130a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4131a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4132273d9f13SBarry Smith 41332ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4134273d9f13SBarry Smith 413527430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4136aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413727430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4138aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4139aa95bbe8SBarry Smith 41401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4141a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4142273d9f13SBarry Smith @*/ 4143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4144d71ae5a4SJacob Faibussowitsch { 4145273d9f13SBarry Smith PetscFunctionBegin; 41466ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41476ba663aaSJed Brown PetscValidType(B, 1); 4148cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4150273d9f13SBarry Smith } 4151273d9f13SBarry Smith 415258d36128SBarry Smith /*@ 415311a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41548f8f2f0dSBarry Smith CSR format for the local rows. 41552fb0ec9aSBarry Smith 4156d083f849SBarry Smith Collective 41572fb0ec9aSBarry Smith 41582fb0ec9aSBarry Smith Input Parameters: 41592fb0ec9aSBarry Smith + comm - MPI communicator 416011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41612fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 416211a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 41632fb0ec9aSBarry Smith calculated if N is given) For square matrices n is almost always m. 416411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 416511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4166483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41672fb0ec9aSBarry Smith . j - column indices 4168f1f2ae84SBarry Smith - a - optional matrix values 41692fb0ec9aSBarry Smith 41702fb0ec9aSBarry Smith Output Parameter: 41712fb0ec9aSBarry Smith . mat - the matrix 417203bfb495SBarry Smith 41732fb0ec9aSBarry Smith Level: intermediate 41742fb0ec9aSBarry Smith 41752fb0ec9aSBarry Smith Notes: 41762ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 41772fb0ec9aSBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 41782ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41792fb0ec9aSBarry Smith 41802ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 418112251496SSatish Balay 4182a4bd8bc0SBarry Smith Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArrays()` 4183a4bd8bc0SBarry Smith 4184a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 4185a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4186a4bd8bc0SBarry Smith 418712251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 418812251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4189c5e4d11fSDmitry Karpeev as shown 41902ef1f0ffSBarry Smith .vb 41912ef1f0ffSBarry Smith 1 0 0 41922ef1f0ffSBarry Smith 2 0 3 P0 41932ef1f0ffSBarry Smith ------- 41942ef1f0ffSBarry Smith 4 5 6 P1 41958f8f2f0dSBarry Smith 41962ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41972ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41982ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41992ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42002fb0ec9aSBarry Smith 42012ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42022ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42032ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42042ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42052ef1f0ffSBarry Smith .ve 42062ef1f0ffSBarry Smith 42071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4208a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42092fb0ec9aSBarry Smith @*/ 4210d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4211d71ae5a4SJacob Faibussowitsch { 42122fb0ec9aSBarry Smith PetscFunctionBegin; 421308401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421408401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42159566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42179566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42189566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42212fb0ec9aSBarry Smith } 42222fb0ec9aSBarry Smith 42238f8f2f0dSBarry Smith /*@ 422411a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42252ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42262ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42276a3d2595SBarry Smith 42286a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42298f8f2f0dSBarry Smith 42308f8f2f0dSBarry Smith Collective 42318f8f2f0dSBarry Smith 42328f8f2f0dSBarry Smith Input Parameters: 42338f8f2f0dSBarry Smith + mat - the matrix 423411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42358f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423611a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42378f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423811a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423911a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42408f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42418f8f2f0dSBarry Smith . J - column indices 42428f8f2f0dSBarry Smith - v - matrix values 42438f8f2f0dSBarry Smith 42442ef1f0ffSBarry Smith Level: deprecated 42458f8f2f0dSBarry Smith 42461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4247a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42488f8f2f0dSBarry Smith @*/ 4249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4250d71ae5a4SJacob Faibussowitsch { 42516a3d2595SBarry Smith PetscInt nnz, i; 42528f8f2f0dSBarry Smith PetscBool nooffprocentries; 42538f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4254fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4255fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42568f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42576a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42586a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42598f8f2f0dSBarry Smith 42608f8f2f0dSBarry Smith PetscFunctionBegin; 4261aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426208401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426308401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426408401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42658f8f2f0dSBarry Smith 42669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42688f8f2f0dSBarry Smith 42698f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42704c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42714c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42724c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42734c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42744c17f1ccSBarry Smith } 42754c17f1ccSBarry Smith } 42768f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42778f8f2f0dSBarry Smith Iii = Ii[i]; 42788f8f2f0dSBarry Smith ldi = ld[i]; 42798f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42838f8f2f0dSBarry Smith ad += md; 42848f8f2f0dSBarry Smith ao += nnz - md; 42858f8f2f0dSBarry Smith } 42868f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42878f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42919566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42929566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42958f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42978f8f2f0dSBarry Smith } 42988f8f2f0dSBarry Smith 42996a3d2595SBarry Smith /*@ 430011a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43016a3d2595SBarry Smith 43026a3d2595SBarry Smith Collective 43036a3d2595SBarry Smith 43046a3d2595SBarry Smith Input Parameters: 43056a3d2595SBarry Smith + mat - the matrix 43066a3d2595SBarry Smith - v - matrix values, stored by row 43076a3d2595SBarry Smith 43086a3d2595SBarry Smith Level: intermediate 43096a3d2595SBarry Smith 4310a4bd8bc0SBarry Smith Notes: 43116a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43126a3d2595SBarry Smith 4313a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4314a4bd8bc0SBarry Smith 43151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4316a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43176a3d2595SBarry Smith @*/ 4318d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4319d71ae5a4SJacob Faibussowitsch { 43206a3d2595SBarry Smith PetscInt nnz, i, m; 43216a3d2595SBarry Smith PetscBool nooffprocentries; 43226a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43236a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43246a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43256a3d2595SBarry Smith PetscScalar *ad, *ao; 43266a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43276a3d2595SBarry Smith PetscInt ldi, Iii, md; 43286a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43296a3d2595SBarry Smith 43306a3d2595SBarry Smith PetscFunctionBegin; 43316a3d2595SBarry Smith m = mat->rmap->n; 43326a3d2595SBarry Smith 43336a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43346a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43356a3d2595SBarry Smith Iii = 0; 43366a3d2595SBarry Smith for (i = 0; i < m; i++) { 43376a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43386a3d2595SBarry Smith ldi = ld[i]; 43396a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43406a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43416a3d2595SBarry Smith ad += md; 4342810441c8SPierre Jolivet if (ao) { 4343810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4344810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43456a3d2595SBarry Smith ao += nnz - md; 4346810441c8SPierre Jolivet } 43476a3d2595SBarry Smith Iii += nnz; 43486a3d2595SBarry Smith } 43496a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43506a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43516a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43526a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43536a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43546a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43556a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43566a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43576a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43586a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43606a3d2595SBarry Smith } 43616a3d2595SBarry Smith 4362273d9f13SBarry Smith /*@C 436311a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4364273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4365273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43662ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4367273d9f13SBarry Smith 4368d083f849SBarry Smith Collective 4369273d9f13SBarry Smith 4370273d9f13SBarry Smith Input Parameters: 4371273d9f13SBarry Smith + comm - MPI communicator 437211a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4373273d9f13SBarry Smith This value should be the same as the local size used in creating the 4374273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4375273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437645f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4377273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437811a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437911a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4380273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4381273d9f13SBarry Smith (same value is used for all local rows) 4382273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4383273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43842ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4385273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4386273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4387273d9f13SBarry Smith submatrix (same value is used for all local rows). 4388273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4389273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43902ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4391273d9f13SBarry Smith structure. The size of this array is equal to the number 4392273d9f13SBarry Smith of local rows, i.e 'm'. 4393273d9f13SBarry Smith 4394273d9f13SBarry Smith Output Parameter: 4395273d9f13SBarry Smith . A - the matrix 4396273d9f13SBarry Smith 439727430b45SBarry Smith Options Database Keys: 439827430b45SBarry Smith + -mat_no_inode - Do not use inodes 439927430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 440027430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 440127430b45SBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix. 440227430b45SBarry Smith Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440327430b45SBarry Smith 44042ef1f0ffSBarry Smith Level: intermediate 44052ef1f0ffSBarry Smith 440627430b45SBarry Smith Notes: 440777433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4408f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4410175b88e8SBarry Smith 441149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441249a6f317SBarry Smith 44132ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44142ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4415273d9f13SBarry Smith storage requirements for this matrix. 4416273d9f13SBarry Smith 441711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4418273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4419273d9f13SBarry Smith that argument. 4420273d9f13SBarry Smith 4421273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4422273d9f13SBarry Smith (possibly both). 4423273d9f13SBarry Smith 442433a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 442533a7c187SSatish Balay first m0 rows belong to process 0, the next m1 rows belong to 442633a7c187SSatish Balay process 1, the next m2 rows belong to process 2 etc.. where 442733a7c187SSatish Balay m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 442833a7c187SSatish Balay values corresponding to [m x N] submatrix. 4429273d9f13SBarry Smith 443033a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443133a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4432df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443333a7c187SSatish Balay 443433a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443533a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443633a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443733a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443833a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443933a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 444033a7c187SSatish Balay illustrates this concept. 444133a7c187SSatish Balay 444233a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444333a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444433a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444533a7c187SSatish Balay local matrix (a rectangular submatrix). 4446273d9f13SBarry Smith 44472ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4448273d9f13SBarry Smith 444997d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44502ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4451da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4452da57b5cdSKarl Rupp .vb 44532ef1f0ffSBarry Smith MatCreate(..., &A); 44542ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44552ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44562ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4457da57b5cdSKarl Rupp .ve 445897d05335SKris Buschelman 4459273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4460273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4461273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4462273d9f13SBarry Smith 44632920cce0SJacob Faibussowitsch Example Usage: 4464273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4465273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4466273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4467efc377ccSKarl Rupp as follows 4468273d9f13SBarry Smith 4469273d9f13SBarry Smith .vb 4470273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4471273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4472273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4473273d9f13SBarry Smith ------------------------------------- 4474273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4475273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4476273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4477273d9f13SBarry Smith ------------------------------------- 4478273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4479273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4480273d9f13SBarry Smith .ve 4481273d9f13SBarry Smith 4482da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4483273d9f13SBarry Smith 4484273d9f13SBarry Smith .vb 4485273d9f13SBarry Smith A B C 4486273d9f13SBarry Smith D E F 4487273d9f13SBarry Smith G H I 4488273d9f13SBarry Smith .ve 4489273d9f13SBarry Smith 4490273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4491273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4492273d9f13SBarry Smith 4493273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4494273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4495273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4496273d9f13SBarry Smith 4497273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4498273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4499273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4500273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450127430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4502273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4503273d9f13SBarry Smith 45042ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45052ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4506273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45072ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4508273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45092ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4510273d9f13SBarry Smith .vb 451127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4514273d9f13SBarry Smith .ve 45152ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4516273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4517273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4518273d9f13SBarry Smith 34 values. 4519273d9f13SBarry Smith 45202ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4521a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4522da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4523273d9f13SBarry Smith .vb 452427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4527273d9f13SBarry Smith .ve 4528273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4529273d9f13SBarry Smith hence pre-allocation is perfect. 4530273d9f13SBarry Smith 45311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4532db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()` 4533273d9f13SBarry Smith @*/ 4534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4535d71ae5a4SJacob Faibussowitsch { 4536b1d57f15SBarry Smith PetscMPIInt size; 4537273d9f13SBarry Smith 4538273d9f13SBarry Smith PetscFunctionBegin; 45399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4542273d9f13SBarry Smith if (size > 1) { 45439566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45449566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4545273d9f13SBarry Smith } else { 45469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4548273d9f13SBarry Smith } 45493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4550273d9f13SBarry Smith } 4551195d93cdSBarry Smith 45520b98dbb4SBarry Smith /*MC 45530b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45540b98dbb4SBarry Smith 45550b98dbb4SBarry Smith Synopsis: 45560b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45570b98dbb4SBarry Smith 45580b98dbb4SBarry Smith Not Collective 45590b98dbb4SBarry Smith 45600b98dbb4SBarry Smith Input Parameter: 45610b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45620b98dbb4SBarry Smith 45630b98dbb4SBarry Smith Output Parameters: 45640b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45654cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45662ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45670b98dbb4SBarry Smith - ierr - error code 45680b98dbb4SBarry Smith 45690b98dbb4SBarry Smith Level: advanced 45700b98dbb4SBarry Smith 45710b98dbb4SBarry Smith Note: 45720b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45730b98dbb4SBarry Smith 45741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45750b98dbb4SBarry Smith M*/ 45760b98dbb4SBarry Smith 45770b98dbb4SBarry Smith /*MC 45780b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith Synopsis: 45810b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45820b98dbb4SBarry Smith 45830b98dbb4SBarry Smith Not Collective 45840b98dbb4SBarry Smith 45850b98dbb4SBarry Smith Input Parameters: 45860b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45870b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45884cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45892ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45900b98dbb4SBarry Smith - ierr - error code 45910b98dbb4SBarry Smith 45920b98dbb4SBarry Smith Level: advanced 45930b98dbb4SBarry Smith 45941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45950b98dbb4SBarry Smith M*/ 45960b98dbb4SBarry Smith 4597127ca0efSMatthew Knepley /*@C 45980ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4599127ca0efSMatthew Knepley 46002ef1f0ffSBarry Smith Not Collective 4601127ca0efSMatthew Knepley 4602127ca0efSMatthew Knepley Input Parameter: 460311a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4604127ca0efSMatthew Knepley 4605127ca0efSMatthew Knepley Output Parameters: 460611a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 460711a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46082ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4609127ca0efSMatthew Knepley 46100ab4885dSBarry Smith Level: intermediate 46110ab4885dSBarry Smith 461211a5261eSBarry Smith Note: 46132ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46142ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46152ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4616127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4617127ca0efSMatthew Knepley 4618fe59aa6dSJacob Faibussowitsch Fortran Notes: 46190ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4620127ca0efSMatthew Knepley 4621fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4622127ca0efSMatthew Knepley @*/ 4623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4624d71ae5a4SJacob Faibussowitsch { 4625195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462604cf37c7SBarry Smith PetscBool flg; 4627b1d57f15SBarry Smith 4628195d93cdSBarry Smith PetscFunctionBegin; 46299566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463028b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463121e72a00SBarry Smith if (Ad) *Ad = a->A; 463221e72a00SBarry Smith if (Ao) *Ao = a->B; 463321e72a00SBarry Smith if (colmap) *colmap = a->garray; 46343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4635195d93cdSBarry Smith } 4636a2243be0SBarry Smith 4637d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4638d71ae5a4SJacob Faibussowitsch { 4639110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46409b8102ccSHong Zhang PetscInt *indx; 4641110bb6e1SHong Zhang PetscScalar *values; 4642421ddf4dSJunchao Zhang MatType rootType; 46439b8102ccSHong Zhang 46449b8102ccSHong Zhang PetscFunctionBegin; 46459566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4646110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4647110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4648110bb6e1SHong Zhang 464948a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4650a22543b6SHong Zhang /* Check sum(n) = N */ 46511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465208401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4653a22543b6SHong Zhang 46549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46559b8102ccSHong Zhang rstart -= m; 46569b8102ccSHong Zhang 4657d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46589b8102ccSHong Zhang for (i = 0; i < m; i++) { 46599566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46609566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46619566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46629b8102ccSHong Zhang } 46639b8102ccSHong Zhang 46649566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46659566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46669566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46679566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46689566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46699566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46719566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4672d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46739566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46749b8102ccSHong Zhang } 46759b8102ccSHong Zhang 4676110bb6e1SHong Zhang /* numeric phase */ 46779566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46789b8102ccSHong Zhang for (i = 0; i < m; i++) { 46799566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46809b8102ccSHong Zhang Ii = i + rstart; 46819566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46829566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46839b8102ccSHong Zhang } 46849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4687c5d6d63eSBarry Smith } 4688c5d6d63eSBarry Smith 4689d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4690d71ae5a4SJacob Faibussowitsch { 46916718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469251a7d1a8SHong Zhang 469351a7d1a8SHong Zhang PetscFunctionBegin; 46943ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46959566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46969566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46979566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47079566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471051a7d1a8SHong Zhang } 471151a7d1a8SHong Zhang 4712c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4713c6db04a5SJed Brown #include <petscbt.h> 47144ebed01fSBarry Smith 4715d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4716d71ae5a4SJacob Faibussowitsch { 4717ce94432eSBarry Smith MPI_Comm comm; 471855d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4719b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4720a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4721b1d57f15SBarry Smith PetscInt proc, m; 4722b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4723b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4724b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472555d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472655d1abb9SHong Zhang MPI_Status *status; 4727fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4728dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 472955d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4730776b82aeSLisandro Dalcin PetscContainer container; 473155d1abb9SHong Zhang 473255d1abb9SHong Zhang PetscFunctionBegin; 47339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47349566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47353c2c1871SHong Zhang 47369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 473855d1abb9SHong Zhang 47399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474028b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47419566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4743fff043a9SJunchao Zhang aa = a_a; 4744bf0cc555SLisandro Dalcin 474555d1abb9SHong Zhang bi = merge->bi; 474655d1abb9SHong Zhang bj = merge->bj; 474755d1abb9SHong Zhang buf_ri = merge->buf_ri; 474855d1abb9SHong Zhang buf_rj = merge->buf_rj; 474955d1abb9SHong Zhang 47509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47517a2fc3feSBarry Smith owners = merge->rowmap->range; 475255d1abb9SHong Zhang len_s = merge->len_s; 475355d1abb9SHong Zhang 475455d1abb9SHong Zhang /* send and recv matrix values */ 47559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47569566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 475755d1abb9SHong Zhang 47589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 475955d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476055d1abb9SHong Zhang if (!len_s[proc]) continue; 476155d1abb9SHong Zhang i = owners[proc]; 47629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476355d1abb9SHong Zhang k++; 476455d1abb9SHong Zhang } 476555d1abb9SHong Zhang 47669566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47679566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47689566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 476955d1abb9SHong Zhang 47709566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47719566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477255d1abb9SHong Zhang 477355d1abb9SHong Zhang /* insert mat values of mpimat */ 47749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47759566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477655d1abb9SHong Zhang 477755d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 477855d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 477955d1abb9SHong Zhang nrows = *(buf_ri_k[k]); 478055d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4781a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478255d1abb9SHong Zhang } 478355d1abb9SHong Zhang 478455d1abb9SHong Zhang /* set values of ba */ 47857a2fc3feSBarry Smith m = merge->rowmap->n; 478655d1abb9SHong Zhang for (i = 0; i < m; i++) { 478755d1abb9SHong Zhang arow = owners[rank] + i; 478855d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 478955d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47909566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479155d1abb9SHong Zhang 479255d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479355d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479455d1abb9SHong Zhang aj = a->j + ai[arow]; 4795fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479655d1abb9SHong Zhang nextaj = 0; 479755d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 479855d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 479955d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480055d1abb9SHong Zhang } 480155d1abb9SHong Zhang } 480255d1abb9SHong Zhang 480355d1abb9SHong Zhang /* add received vals into ba */ 480455d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480555d1abb9SHong Zhang /* i-th row */ 480655d1abb9SHong Zhang if (i == *nextrow[k]) { 480755d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 480855d1abb9SHong Zhang aj = buf_rj[k] + *(nextai[k]); 480955d1abb9SHong Zhang aa = abuf_r[k] + *(nextai[k]); 481055d1abb9SHong Zhang nextaj = 0; 481155d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481255d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481355d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481455d1abb9SHong Zhang } 481555d1abb9SHong Zhang } 48169371c9d4SSatish Balay nextrow[k]++; 48179371c9d4SSatish Balay nextai[k]++; 481855d1abb9SHong Zhang } 481955d1abb9SHong Zhang } 48209566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482155d1abb9SHong Zhang } 48229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482555d1abb9SHong Zhang 48269566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48279566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48289566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48299566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483255d1abb9SHong Zhang } 483338f152feSBarry Smith 4834d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4835d71ae5a4SJacob Faibussowitsch { 483655a3bba9SHong Zhang Mat B_mpi; 4837c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4838b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4839b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4840d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4841a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4842c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4843b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484455d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484558cb9c82SHong Zhang MPI_Status *status; 48460298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4847be0fcf8dSHong Zhang PetscBT lnkbt; 484851a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4849776b82aeSLisandro Dalcin PetscContainer container; 485002c68681SHong Zhang 4851e5f2cdd8SHong Zhang PetscFunctionBegin; 48529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48533c2c1871SHong Zhang 485438f152feSBarry Smith /* make sure it is a PETSc comm */ 48559566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 485855d1abb9SHong Zhang 48599566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4861e5f2cdd8SHong Zhang 48626abd8857SHong Zhang /* determine row ownership */ 48639566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487055d1abb9SHong Zhang 48717a2fc3feSBarry Smith m = merge->rowmap->n; 48727a2fc3feSBarry Smith owners = merge->rowmap->range; 48736abd8857SHong Zhang 48746abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48753e06a4e6SHong Zhang len_s = merge->len_s; 487651a7d1a8SHong Zhang 48772257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4878c2234fe3SHong Zhang merge->nsend = 0; 4879409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48802257cef7SHong Zhang len_si[proc] = 0; 48813e06a4e6SHong Zhang if (proc == rank) { 48826abd8857SHong Zhang len_s[proc] = 0; 48833e06a4e6SHong Zhang } else { 488402c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48853e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48863e06a4e6SHong Zhang } 48873e06a4e6SHong Zhang if (len_s[proc]) { 4888c2234fe3SHong Zhang merge->nsend++; 48892257cef7SHong Zhang nrows = 0; 48902257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48912257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48922257cef7SHong Zhang } 48932257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48942257cef7SHong Zhang len += len_si[proc]; 4895409913e3SHong Zhang } 489658cb9c82SHong Zhang } 4897409913e3SHong Zhang 48982257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48999566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49009566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4901671beff6SHong Zhang 49023e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49039566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49049566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490502c68681SHong Zhang 49063e06a4e6SHong Zhang /* post the Isend of j-structure */ 49079566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49083e06a4e6SHong Zhang 49092257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4910409913e3SHong Zhang if (!len_s[proc]) continue; 491102c68681SHong Zhang i = owners[proc]; 49129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491351a7d1a8SHong Zhang k++; 491451a7d1a8SHong Zhang } 491551a7d1a8SHong Zhang 49163e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49179566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49189566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 491902c68681SHong Zhang 492002c68681SHong Zhang /* send and recv i-structure */ 49219566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49229566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492302c68681SHong Zhang 49249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49253e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49262257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 492702c68681SHong Zhang if (!len_s[proc]) continue; 49283e06a4e6SHong Zhang /* form outgoing message for i-structure: 49293e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49303e06a4e6SHong Zhang [1:nrows]: row index (global) 49313e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49323e06a4e6SHong Zhang */ 49332257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49343e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49353e06a4e6SHong Zhang buf_si[0] = nrows; 49363e06a4e6SHong Zhang buf_si_i[0] = 0; 49373e06a4e6SHong Zhang nrows = 0; 49383e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49393e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49403e06a4e6SHong Zhang if (anzi) { 49413e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49423e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49433e06a4e6SHong Zhang nrows++; 49443e06a4e6SHong Zhang } 49453e06a4e6SHong Zhang } 49469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 494702c68681SHong Zhang k++; 49482257cef7SHong Zhang buf_si += len_si[proc]; 494902c68681SHong Zhang } 49502257cef7SHong Zhang 49519566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49529566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495302c68681SHong Zhang 49549566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495548a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49563e06a4e6SHong Zhang 49579566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49589566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49599566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49609566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49619566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496458cb9c82SHong Zhang 4965bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496658cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 496858cb9c82SHong Zhang bi[0] = 0; 496958cb9c82SHong Zhang 4970be0fcf8dSHong Zhang /* create and initialize a linked list */ 4971be0fcf8dSHong Zhang nlnk = N + 1; 49729566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497358cb9c82SHong Zhang 4974bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4975bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49769566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49772205254eSKarl Rupp 497858cb9c82SHong Zhang current_space = free_space; 497958cb9c82SHong Zhang 4980bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49819566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49821d79065fSBarry Smith 49833e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49842257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49853e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49863e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4987a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49883e06a4e6SHong Zhang } 49892257cef7SHong Zhang 4990d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4991bcc1bcd5SHong Zhang len = 0; 499258cb9c82SHong Zhang for (i = 0; i < m; i++) { 499358cb9c82SHong Zhang bnzi = 0; 499458cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499558cb9c82SHong Zhang arow = owners[rank] + i; 499658cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 499758cb9c82SHong Zhang aj = a->j + ai[arow]; 49989566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 499958cb9c82SHong Zhang bnzi += nlnk; 500058cb9c82SHong Zhang /* add received col data into lnk */ 500151a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500255d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50033e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50043e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50059566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50063e06a4e6SHong Zhang bnzi += nlnk; 50079371c9d4SSatish Balay nextrow[k]++; 50089371c9d4SSatish Balay nextai[k]++; 50093e06a4e6SHong Zhang } 501058cb9c82SHong Zhang } 5011bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501258cb9c82SHong Zhang 501358cb9c82SHong Zhang /* if free space is not available, make more free space */ 501448a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501558cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50169566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50179566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5018bcc1bcd5SHong Zhang 501958cb9c82SHong Zhang current_space->array += bnzi; 502058cb9c82SHong Zhang current_space->local_used += bnzi; 502158cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502258cb9c82SHong Zhang 502358cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502458cb9c82SHong Zhang } 5025bcc1bcd5SHong Zhang 50269566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5027bcc1bcd5SHong Zhang 50289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50299566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50309566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5031409913e3SHong Zhang 5032bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50339566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503554b84b50SHong Zhang if (n == PETSC_DECIDE) { 50369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 503754b84b50SHong Zhang } else { 50389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 503954b84b50SHong Zhang } 50409566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50419566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50429566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5043d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50449566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504558cb9c82SHong Zhang 504690431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50476abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5048affca5deSHong Zhang merge->bi = bi; 5049affca5deSHong Zhang merge->bj = bj; 505002c68681SHong Zhang merge->buf_ri = buf_ri; 505102c68681SHong Zhang merge->buf_rj = buf_rj; 50520298fd71SBarry Smith merge->coi = NULL; 50530298fd71SBarry Smith merge->coj = NULL; 50540298fd71SBarry Smith merge->owners_co = NULL; 5055affca5deSHong Zhang 50569566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5057bf0cc555SLisandro Dalcin 5058affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50599566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50609566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50619566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50629566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50639566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5064affca5deSHong Zhang *mpimat = B_mpi; 506538f152feSBarry Smith 50669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5068e5f2cdd8SHong Zhang } 506925616d81SHong Zhang 5070d4036a1aSHong Zhang /*@C 507111a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5072d4036a1aSHong Zhang matrices from each processor 5073d4036a1aSHong Zhang 5074d083f849SBarry Smith Collective 5075d4036a1aSHong Zhang 5076d4036a1aSHong Zhang Input Parameters: 5077d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5078d4036a1aSHong Zhang . seqmat - the input sequential matrices 507911a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508011a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5082d4036a1aSHong Zhang 5083d4036a1aSHong Zhang Output Parameter: 5084d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5085d4036a1aSHong Zhang 5086d4036a1aSHong Zhang Level: advanced 5087d4036a1aSHong Zhang 508811a5261eSBarry Smith Note: 5089d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5090d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 509111a5261eSBarry Smith destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat. 50922ef1f0ffSBarry Smith 50931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5094d4036a1aSHong Zhang @*/ 5095d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5096d71ae5a4SJacob Faibussowitsch { 50977e63b356SHong Zhang PetscMPIInt size; 509855d1abb9SHong Zhang 509955d1abb9SHong Zhang PetscFunctionBegin; 51009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51017e63b356SHong Zhang if (size == 1) { 51029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51037e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51049566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51057e63b356SHong Zhang } else { 51069566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51077e63b356SHong Zhang } 51089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51107e63b356SHong Zhang } 51119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511248a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51139566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511655d1abb9SHong Zhang } 51174ebed01fSBarry Smith 5118bc08b0f1SBarry Smith /*@ 51192920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51208a9c020eSBarry Smith 51218a9c020eSBarry Smith Not Collective 51228a9c020eSBarry Smith 51232fe279fdSBarry Smith Input Parameter: 512420f4b53cSBarry Smith . A - the matrix 51258a9c020eSBarry Smith 51268a9c020eSBarry Smith Output Parameter: 51278a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51288a9c020eSBarry Smith 51298a9c020eSBarry Smith Level: developer 51308a9c020eSBarry Smith 51318a9c020eSBarry Smith Notes: 51322920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51332920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51342920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51352920cce0SJacob Faibussowitsch 513611a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51378a9c020eSBarry Smith 51382920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51392920cce0SJacob Faibussowitsch 514011a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51418a9c020eSBarry Smith 51421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51438a9c020eSBarry Smith @*/ 5144d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5145d71ae5a4SJacob Faibussowitsch { 51468a9c020eSBarry Smith PetscBool mpi; 51478a9c020eSBarry Smith 51488a9c020eSBarry Smith PetscFunctionBegin; 51498a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51508a9c020eSBarry Smith if (mpi) { 51518a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51528a9c020eSBarry Smith } else { 51538a9c020eSBarry Smith *A_loc = A; 51548a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51558a9c020eSBarry Smith } 51563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51578a9c020eSBarry Smith } 51588a9c020eSBarry Smith 51598a9c020eSBarry Smith /*@ 51602920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516125616d81SHong Zhang 516232fba14fSHong Zhang Not Collective 516325616d81SHong Zhang 516425616d81SHong Zhang Input Parameters: 516525616d81SHong Zhang + A - the matrix 516611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 516725616d81SHong Zhang 516825616d81SHong Zhang Output Parameter: 516925616d81SHong Zhang . A_loc - the local sequential matrix generated 517025616d81SHong Zhang 517125616d81SHong Zhang Level: developer 517225616d81SHong Zhang 517377c65a98SStefano Zampini Notes: 51742920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51752920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51762920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51772920cce0SJacob Faibussowitsch 517811a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51798a9c020eSBarry Smith 51802920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51812920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51822920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51832920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518477c65a98SStefano Zampini 51851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518625616d81SHong Zhang @*/ 5187d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5188d71ae5a4SJacob Faibussowitsch { 518901b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5190b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5191b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5192ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5193ce496241SStefano Zampini PetscScalar *ca, *cam; 519477c65a98SStefano Zampini PetscMPIInt size; 5195d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51965a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51978661ff28SBarry Smith PetscBool match; 519825616d81SHong Zhang 519925616d81SHong Zhang PetscFunctionBegin; 52009566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520128b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520377c65a98SStefano Zampini if (size == 1) { 520477c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520677c65a98SStefano Zampini *A_loc = mpimat->A; 520777c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52089566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 520977c65a98SStefano Zampini } 52103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521177c65a98SStefano Zampini } 521270a9ba44SHong Zhang 52139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5214b78526a6SJose E. Roman a = (Mat_SeqAIJ *)(mpimat->A)->data; 5215b78526a6SJose E. Roman b = (Mat_SeqAIJ *)(mpimat->B)->data; 52169371c9d4SSatish Balay ai = a->i; 52179371c9d4SSatish Balay aj = a->j; 52189371c9d4SSatish Balay bi = b->i; 52199371c9d4SSatish Balay bj = b->j; 52209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5222ce496241SStefano Zampini aa = aav; 5223ce496241SStefano Zampini ba = bav; 522401b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5226dea91ad1SHong Zhang ci[0] = 0; 5227ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5230dea91ad1SHong Zhang k = 0; 523101b7ae99SHong Zhang for (i = 0; i < am; i++) { 52325a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52335a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523401b7ae99SHong Zhang /* off-diagonal portion of A */ 52355a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52365a7d977cSHong Zhang col = cmap[*bj]; 52375a7d977cSHong Zhang if (col >= cstart) break; 52389371c9d4SSatish Balay cj[k] = col; 52399371c9d4SSatish Balay bj++; 52405a7d977cSHong Zhang ca[k++] = *ba++; 52415a7d977cSHong Zhang } 52425a7d977cSHong Zhang /* diagonal portion of A */ 52435a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52445a7d977cSHong Zhang cj[k] = cstart + *aj++; 52455a7d977cSHong Zhang ca[k++] = *aa++; 52465a7d977cSHong Zhang } 52475a7d977cSHong Zhang /* off-diagonal portion of A */ 52485a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52495a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52505a7d977cSHong Zhang ca[k++] = *ba++; 52515a7d977cSHong Zhang } 525225616d81SHong Zhang } 5253dea91ad1SHong Zhang /* put together the new matrix */ 52549566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5255dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5256dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5257dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5258e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5259e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5260dea91ad1SHong Zhang mat->nonew = 0; 52615a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52625a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5263fff043a9SJunchao Zhang ci = mat->i; 5264fff043a9SJunchao Zhang cj = mat->j; 52659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52665a7d977cSHong Zhang for (i = 0; i < am; i++) { 52675a7d977cSHong Zhang /* off-diagonal portion of A */ 52685a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52695a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52705a7d977cSHong Zhang col = cmap[*bj]; 52715a7d977cSHong Zhang if (col >= cstart) break; 52729371c9d4SSatish Balay *cam++ = *ba++; 52739371c9d4SSatish Balay bj++; 52745a7d977cSHong Zhang } 52755a7d977cSHong Zhang /* diagonal portion of A */ 5276ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5277a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52785a7d977cSHong Zhang /* off-diagonal portion of A */ 5279f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52809371c9d4SSatish Balay *cam++ = *ba++; 52819371c9d4SSatish Balay bj++; 5282f33d1a9aSHong Zhang } 52835a7d977cSHong Zhang } 52849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52889566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529025616d81SHong Zhang } 529125616d81SHong Zhang 5292ed502f03SStefano Zampini /*@ 529311a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52944cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5295ed502f03SStefano Zampini 5296ed502f03SStefano Zampini Not Collective 5297ed502f03SStefano Zampini 5298ed502f03SStefano Zampini Input Parameters: 5299ed502f03SStefano Zampini + A - the matrix 530011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5301ed502f03SStefano Zampini 5302d8d19677SJose E. Roman Output Parameters: 53032ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5304ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5305ed502f03SStefano Zampini 5306ed502f03SStefano Zampini Level: developer 5307ed502f03SStefano Zampini 530811a5261eSBarry Smith Note: 53092ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53104cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5311ed502f03SStefano Zampini 53121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5313ed502f03SStefano Zampini @*/ 5314d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5315d71ae5a4SJacob Faibussowitsch { 5316ed502f03SStefano Zampini Mat Ao, Ad; 5317ed502f03SStefano Zampini const PetscInt *cmap; 5318ed502f03SStefano Zampini PetscMPIInt size; 5319ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5320ed502f03SStefano Zampini 5321ed502f03SStefano Zampini PetscFunctionBegin; 53229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5324ed502f03SStefano Zampini if (size == 1) { 5325ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53269566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5327ed502f03SStefano Zampini *A_loc = Ad; 5328ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53299566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5330ed502f03SStefano Zampini } 53319566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5333ed502f03SStefano Zampini } 53349566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53359566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5336ed502f03SStefano Zampini if (f) { 53379566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5338ed502f03SStefano Zampini } else { 5339ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5340ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5341ed502f03SStefano Zampini Mat_SeqAIJ *c; 5342ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5343ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5344ed502f03SStefano Zampini PetscInt *ci, *cj; 5345ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5346ed502f03SStefano Zampini PetscScalar *ca; 5347ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5348ed502f03SStefano Zampini 53499566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53509566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5353ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5354ed502f03SStefano Zampini PetscInt k; 53559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5358ed502f03SStefano Zampini ci[0] = 0; 5359ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5360ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5361ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5362ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5363ed502f03SStefano Zampini /* diagonal portion of A */ 5364ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5365ed502f03SStefano Zampini cj[k] = *aj++; 5366ed502f03SStefano Zampini ca[k] = *aa++; 5367ed502f03SStefano Zampini } 5368ed502f03SStefano Zampini /* off-diagonal portion of A */ 5369ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5370ed502f03SStefano Zampini cj[k] = dn + *bj++; 5371ed502f03SStefano Zampini ca[k] = *ba++; 5372ed502f03SStefano Zampini } 5373ed502f03SStefano Zampini } 5374ed502f03SStefano Zampini /* put together the new matrix */ 53759566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5376ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5377ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5378ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5379ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5380ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5381ed502f03SStefano Zampini c->nonew = 0; 53829566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5383ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5385ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5386ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5387ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5388ed502f03SStefano Zampini /* diagonal portion of A */ 5389ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5390ed502f03SStefano Zampini /* off-diagonal portion of A */ 5391ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5392ed502f03SStefano Zampini } 53939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5397ed502f03SStefano Zampini if (glob) { 5398ed502f03SStefano Zampini PetscInt cst, *gidx; 5399ed502f03SStefano Zampini 54009566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5402ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5403ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54049566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5405ed502f03SStefano Zampini } 5406ed502f03SStefano Zampini } 54079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5409ed502f03SStefano Zampini } 5410ed502f03SStefano Zampini 541132fba14fSHong Zhang /*@C 541211a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541332fba14fSHong Zhang 541432fba14fSHong Zhang Not Collective 541532fba14fSHong Zhang 541632fba14fSHong Zhang Input Parameters: 541732fba14fSHong Zhang + A - the matrix 541811a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 541920f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542020f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542132fba14fSHong Zhang 542232fba14fSHong Zhang Output Parameter: 542332fba14fSHong Zhang . A_loc - the local sequential matrix generated 542432fba14fSHong Zhang 542532fba14fSHong Zhang Level: developer 542632fba14fSHong Zhang 54271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 542832fba14fSHong Zhang @*/ 5429d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5430d71ae5a4SJacob Faibussowitsch { 543132fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543232fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543332fba14fSHong Zhang IS isrowa, iscola; 543432fba14fSHong Zhang Mat *aloc; 54354a2b5492SBarry Smith PetscBool match; 543632fba14fSHong Zhang 543732fba14fSHong Zhang PetscFunctionBegin; 54389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 543928b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54409566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544132fba14fSHong Zhang if (!row) { 54429371c9d4SSatish Balay start = A->rmap->rstart; 54439371c9d4SSatish Balay end = A->rmap->rend; 54449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544532fba14fSHong Zhang } else { 544632fba14fSHong Zhang isrowa = *row; 544732fba14fSHong Zhang } 544832fba14fSHong Zhang if (!col) { 5449d0f46423SBarry Smith start = A->cmap->rstart; 545032fba14fSHong Zhang cmap = a->garray; 5451d0f46423SBarry Smith nzA = a->A->cmap->n; 5452d0f46423SBarry Smith nzB = a->B->cmap->n; 54539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545432fba14fSHong Zhang ncols = 0; 545532fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545632fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 545732fba14fSHong Zhang else break; 545832fba14fSHong Zhang } 545932fba14fSHong Zhang imark = i; 546032fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546132fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54629566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546332fba14fSHong Zhang } else { 546432fba14fSHong Zhang iscola = *col; 546532fba14fSHong Zhang } 546632fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 546832fba14fSHong Zhang aloc[0] = *A_loc; 546932fba14fSHong Zhang } 54709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5471109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54729566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5473109e0772SStefano Zampini } 547432fba14fSHong Zhang *A_loc = aloc[0]; 54759566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547648a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 547748a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548032fba14fSHong Zhang } 548132fba14fSHong Zhang 54825c65b9ecSFande Kong /* 54835c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54845c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54855c65b9ecSFande Kong * on a global size. 54865c65b9ecSFande Kong * */ 5487ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5488d71ae5a4SJacob Faibussowitsch { 54895c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 54905c65b9ecSFande Kong Mat_SeqAIJ *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth; 5491131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5492131c27b5Sprj- PetscMPIInt owner; 54935c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54945c65b9ecSFande Kong const PetscInt *lrowindices; 54955c65b9ecSFande Kong PetscSF sf, osf; 54965c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54975c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54985c65b9ecSFande Kong MPI_Comm comm; 54995c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5500fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55015c65b9ecSFande Kong 55025c65b9ecSFande Kong PetscFunctionBegin; 55039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55045c65b9ecSFande Kong /* plocalsize is the number of roots 55055c65b9ecSFande Kong * nrows is the number of leaves 55065c65b9ecSFande Kong * */ 55079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55099566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55115c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55125c65b9ecSFande Kong /* Find a remote index and an owner for a row 55135c65b9ecSFande Kong * The row could be local or remote 55145c65b9ecSFande Kong * */ 551534bcad68SFande Kong owner = 0; 551634bcad68SFande Kong lidx = 0; 55179566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55185c65b9ecSFande Kong iremote[i].index = lidx; 55195c65b9ecSFande Kong iremote[i].rank = owner; 55205c65b9ecSFande Kong } 55215c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5523f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55245c65b9ecSFande Kong * offsets 55255c65b9ecSFande Kong * */ 55269566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55279566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55289566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5529bc8e477aSFande Kong 55309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55335c65b9ecSFande Kong roffsets[0] = 0; 55345c65b9ecSFande Kong roffsets[1] = 0; 55355c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55364cf0e950SBarry Smith /* diagonal */ 55375c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55384cf0e950SBarry Smith /* off-diagonal */ 55395c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55405c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55415c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55425c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55435c65b9ecSFande Kong } 55449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55465c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55529566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55539566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55545c65b9ecSFande Kong dntotalcols = 0; 55555c65b9ecSFande Kong ontotalcols = 0; 5556bc8e477aSFande Kong ncol = 0; 55575c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55585c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5559bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55604cf0e950SBarry Smith /* diagonal */ 55615c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55624cf0e950SBarry Smith /* off-diagonal */ 55635c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55645c65b9ecSFande Kong } 55655c65b9ecSFande Kong /* We do not need to figure the right number of columns 55665c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55675c65b9ecSFande Kong * */ 55689566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55699566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55709566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55715c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55724cf0e950SBarry Smith /* diagonal */ 55739566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55744cf0e950SBarry Smith /* off-diagonal */ 55759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55764cf0e950SBarry Smith /* diagonal */ 55779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55784cf0e950SBarry Smith /* off-diagonal */ 55799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55805c65b9ecSFande Kong dntotalcols = 0; 55815c65b9ecSFande Kong ontotalcols = 0; 55825c65b9ecSFande Kong ntotalcols = 0; 55835c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558434bcad68SFande Kong owner = 0; 55859566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55865c65b9ecSFande Kong /* Set iremote for diag matrix */ 55875c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55885c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55895c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55905c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55915c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55925c65b9ecSFande Kong } 55934cf0e950SBarry Smith /* off-diagonal */ 55945c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55955c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55965c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55975c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55985c65b9ecSFande Kong } 55995c65b9ecSFande Kong } 56009566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56019566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56029566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56039566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56045c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56055c65b9ecSFande Kong * Diag matrix 56065c65b9ecSFande Kong * */ 56079566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56089566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56099566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56105c65b9ecSFande Kong 56119566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56124cf0e950SBarry Smith /* off-diagonal */ 56139566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56149566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56159566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56184cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56225c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56235c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56255c65b9ecSFande Kong /* We want P_oth store global indices */ 56269566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56275c65b9ecSFande Kong /* Use memory scalable approach */ 56289566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56299566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56325c65b9ecSFande Kong /* Convert back to local indices */ 56335c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56355c65b9ecSFande Kong nout = 0; 56369566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 563708401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56395c65b9ecSFande Kong /* Exchange values */ 56409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56445c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56455c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56485c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56509566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56545c65b9ecSFande Kong } 56555c65b9ecSFande Kong 56565c65b9ecSFande Kong /* 56575c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56585c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56595c65b9ecSFande Kong * */ 5660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5661d71ae5a4SJacob Faibussowitsch { 56625c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5663bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5664bc8e477aSFande Kong IS rows, map; 5665bc8e477aSFande Kong PetscHMapI hamp; 5666bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56675c65b9ecSFande Kong MPI_Comm comm; 56685c65b9ecSFande Kong PetscSF sf, osf; 5669bc8e477aSFande Kong PetscBool has; 56705c65b9ecSFande Kong 56715c65b9ecSFande Kong PetscFunctionBegin; 56729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56745c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56755c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56765c65b9ecSFande Kong * */ 56775c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56785c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5679eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5681bc8e477aSFande Kong count = 0; 5682bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5683bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5684bc8e477aSFande Kong key = a->garray[i] / dof; 56859566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5686bc8e477aSFande Kong if (!has) { 5687bc8e477aSFande Kong mapping[i] = count; 56889566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5689bc8e477aSFande Kong } else { 5690bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5691bc8e477aSFande Kong mapping[i] = count - 1; 56925c65b9ecSFande Kong } 5693bc8e477aSFande Kong } 56949566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56959566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5696eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56985c65b9ecSFande Kong off = 0; 56999566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57009566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57019566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57035c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57049566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57069566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57095c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57105c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571135cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5712fff043a9SJunchao Zhang */ 5713fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5714fff043a9SJunchao Zhang 57159566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57169566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 571708401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57185c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57195c65b9ecSFande Kong /* Update values in place */ 57209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57286718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57315c65b9ecSFande Kong } 57325c65b9ecSFande Kong 573325616d81SHong Zhang /*@C 573420f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573525616d81SHong Zhang 5736c3339decSBarry Smith Collective 573725616d81SHong Zhang 573825616d81SHong Zhang Input Parameters: 573911a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574011a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574225616d81SHong Zhang 5743f1a722f8SMatthew G. Knepley Output Parameters: 574427430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574527430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5746f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 574725616d81SHong Zhang 574825616d81SHong Zhang Level: developer 574925616d81SHong Zhang 575020f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575125616d81SHong Zhang @*/ 5752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5753d71ae5a4SJacob Faibussowitsch { 5754899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5755b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575625616d81SHong Zhang IS isrowb, iscolb; 57570298fd71SBarry Smith Mat *bseq = NULL; 575825616d81SHong Zhang 575925616d81SHong Zhang PetscFunctionBegin; 576020f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576120f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576325616d81SHong Zhang 576425616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5765d0f46423SBarry Smith start = A->cmap->rstart; 576625616d81SHong Zhang cmap = a->garray; 5767d0f46423SBarry Smith nzA = a->A->cmap->n; 5768d0f46423SBarry Smith nzB = a->B->cmap->n; 57699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577025616d81SHong Zhang ncols = 0; 57710390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577225616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577325616d81SHong Zhang else break; 577425616d81SHong Zhang } 577525616d81SHong Zhang imark = i; 57760390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57770390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57789566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57799566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578025616d81SHong Zhang } else { 578108401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57829371c9d4SSatish Balay isrowb = *rowb; 57839371c9d4SSatish Balay iscolb = *colb; 57849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578525616d81SHong Zhang bseq[0] = *B_seq; 578625616d81SHong Zhang } 57879566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 578825616d81SHong Zhang *B_seq = bseq[0]; 57899566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579025616d81SHong Zhang if (!rowb) { 57919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579225616d81SHong Zhang } else { 579325616d81SHong Zhang *rowb = isrowb; 579425616d81SHong Zhang } 579525616d81SHong Zhang if (!colb) { 57969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 579725616d81SHong Zhang } else { 579825616d81SHong Zhang *colb = iscolb; 579925616d81SHong Zhang } 58009566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580225616d81SHong Zhang } 5803429d309bSHong Zhang 5804f8487c73SHong Zhang /* 580527430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580601b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5807429d309bSHong Zhang 5808c3339decSBarry Smith Collective 5809429d309bSHong Zhang 5810429d309bSHong Zhang Input Parameters: 581127430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581227430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5813429d309bSHong Zhang 5814429d309bSHong Zhang Output Parameter: 58150298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58160298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58170298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5818598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5819429d309bSHong Zhang 582011a5261eSBarry Smith Developer Note: 582111a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58226eb45d04SBarry Smith for this matrix. This is not desirable.. 58236eb45d04SBarry Smith 5824429d309bSHong Zhang Level: developer 5825429d309bSHong Zhang 5826f8487c73SHong Zhang */ 5827d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5828d71ae5a4SJacob Faibussowitsch { 5829899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 583087025532SHong Zhang Mat_SeqAIJ *b_oth; 58314b8d542aSHong Zhang VecScatter ctx; 5832ce94432eSBarry Smith MPI_Comm comm; 58333515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58343515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5835277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5836f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5837277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5838ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5839ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5840429d309bSHong Zhang 5841429d309bSHong Zhang PetscFunctionBegin; 58429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5844a7c7454dSHong Zhang 584520f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584620f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58479566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5849a6b2eed2SHong Zhang 5850ec07b8f8SHong Zhang if (size == 1) { 5851ec07b8f8SHong Zhang startsj_s = NULL; 5852ec07b8f8SHong Zhang bufa_ptr = NULL; 585352f7967eSHong Zhang *B_oth = NULL; 58543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5855ec07b8f8SHong Zhang } 5856ec07b8f8SHong Zhang 5857fa83eaafSHong Zhang ctx = a->Mvctx; 58584b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58594b8d542aSHong Zhang 58609566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58613515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58629566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58639566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5865ddea5d60SJunchao Zhang rwaits = reqs; 58668e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5867429d309bSHong Zhang 5868b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5869429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5870a6b2eed2SHong Zhang /* i-array */ 5871a6b2eed2SHong Zhang /* post receives */ 58729566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5873a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587474268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5875e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5877429d309bSHong Zhang } 5878a6b2eed2SHong Zhang 5879a6b2eed2SHong Zhang /* pack the outgoing message */ 58809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58812205254eSKarl Rupp 58822205254eSKarl Rupp sstartsj[0] = 0; 58832205254eSKarl Rupp rstartsj[0] = 0; 5884a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58853515ee7fSJunchao Zhang if (nsends) { 58863515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58883515ee7fSJunchao Zhang } 5889a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58903515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5891e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589287025532SHong Zhang for (j = 0; j < nrows; j++) { 5893d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5894e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58959566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58962205254eSKarl Rupp 5897e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58982205254eSKarl Rupp 5899e42f35eeSHong Zhang len += ncols; 59009566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5901e42f35eeSHong Zhang } 5902a6b2eed2SHong Zhang k++; 5903429d309bSHong Zhang } 59049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59052205254eSKarl Rupp 5906dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5907429d309bSHong Zhang } 590887025532SHong Zhang /* recvs and sends of i-array are completed */ 59099566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59109566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5911e42f35eeSHong Zhang 5912a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5915a6b2eed2SHong Zhang 591687025532SHong Zhang /* create i-array of B_oth */ 59179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59182205254eSKarl Rupp 591987025532SHong Zhang b_othi[0] = 0; 5920a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5921a6b2eed2SHong Zhang k = 0; 5922a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59233515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59243515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592587025532SHong Zhang for (j = 0; j < nrows; j++) { 592687025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59279566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5928f91af8c7SBarry Smith k++; 5929a6b2eed2SHong Zhang } 5930dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5931a6b2eed2SHong Zhang } 59329566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5933a6b2eed2SHong Zhang 59346aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5937a6b2eed2SHong Zhang 593887025532SHong Zhang /* j-array */ 5939a6b2eed2SHong Zhang /* post receives of j-array */ 5940a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594187025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5943a6b2eed2SHong Zhang } 5944e42f35eeSHong Zhang 5945e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59463515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5947a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5948e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5949a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595087025532SHong Zhang for (j = 0; j < nrows; j++) { 5951d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5952e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59539566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5954ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59559566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5956e42f35eeSHong Zhang } 595787025532SHong Zhang } 59589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 595987025532SHong Zhang } 596087025532SHong Zhang 596187025532SHong Zhang /* recvs and sends of j-array are completed */ 59629566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596387025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5964b7f45c76SHong Zhang sstartsj = *startsj_s; 59651d79065fSBarry Smith rstartsj = *startsj_r; 596687025532SHong Zhang bufa = *bufa_ptr; 596787025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5969ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597087025532SHong Zhang 597187025532SHong Zhang /* a-array */ 597287025532SHong Zhang /* post receives of a-array */ 597387025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597487025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597687025532SHong Zhang } 5977e42f35eeSHong Zhang 5978e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59793515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598087025532SHong Zhang for (i = 0; i < nsends; i++) { 5981e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598287025532SHong Zhang bufA = bufa + sstartsj[i]; 598387025532SHong Zhang for (j = 0; j < nrows; j++) { 5984d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5985e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59869566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5987ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59889566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5989e42f35eeSHong Zhang } 5990a6b2eed2SHong Zhang } 59919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5992a6b2eed2SHong Zhang } 599387025532SHong Zhang /* recvs and sends of a-array are completed */ 59949566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59959566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5996a6b2eed2SHong Zhang 599787025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5998a6b2eed2SHong Zhang /* put together the new matrix */ 59999566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6000a6b2eed2SHong Zhang 6001a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6002a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600387025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6004e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6005e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600687025532SHong Zhang b_oth->nonew = 0; 6007a6b2eed2SHong Zhang 60089566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6009b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60109566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60119566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6012dea91ad1SHong Zhang } else { 6013b7f45c76SHong Zhang *startsj_s = sstartsj; 60141d79065fSBarry Smith *startsj_r = rstartsj; 601587025532SHong Zhang *bufa_ptr = bufa; 601687025532SHong Zhang } 6017fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6019dea91ad1SHong Zhang } 60203515ee7fSJunchao Zhang 60219566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60229566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6025429d309bSHong Zhang } 6026ccd8e176SBarry Smith 6027cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6028cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6029ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60309779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6031a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6032191b95cbSRichard Tran Mills #endif 6033ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6034cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60355d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6036cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60375d7652ecSHong Zhang #endif 6038d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6039d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6040d24d4204SJose E. Roman #endif 604163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604363c07aadSStefano Zampini #endif 60443338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60453338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60463338378cSStefano Zampini #endif 6047d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6048d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6049d5e393b6SSuyash Tandon #endif 60503d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60513d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60523d0639e7SStefano Zampini #endif 6053d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60544222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60554222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605617667f90SBarry Smith 6057fc4dec0aSBarry Smith /* 6058fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6059fc4dec0aSBarry Smith 6060fc4dec0aSBarry Smith n p p 60612da392ccSBarry Smith [ ] [ ] [ ] 60622da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60632da392ccSBarry Smith [ ] [ ] [ ] 6064fc4dec0aSBarry Smith 6065fc4dec0aSBarry Smith */ 6066d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6067d71ae5a4SJacob Faibussowitsch { 6068fc4dec0aSBarry Smith Mat At, Bt, Ct; 6069fc4dec0aSBarry Smith 6070fc4dec0aSBarry Smith PetscFunctionBegin; 60719566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60729566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60739566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60759566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60767fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60779566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6080fc4dec0aSBarry Smith } 6081fc4dec0aSBarry Smith 6082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6083d71ae5a4SJacob Faibussowitsch { 60846718818eSStefano Zampini PetscBool cisdense; 6085fc4dec0aSBarry Smith 6086fc4dec0aSBarry Smith PetscFunctionBegin; 608708401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6090d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60929566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6093f75ecaa4SHong Zhang 60944222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6096fc4dec0aSBarry Smith } 6097fc4dec0aSBarry Smith 6098d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6099d71ae5a4SJacob Faibussowitsch { 61004222ddf1SHong Zhang Mat_Product *product = C->product; 61014222ddf1SHong Zhang Mat A = product->A, B = product->B; 6102fc4dec0aSBarry Smith 6103fc4dec0aSBarry Smith PetscFunctionBegin; 610420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61064222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61074222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6109fc4dec0aSBarry Smith } 6110fc4dec0aSBarry Smith 6111d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6112d71ae5a4SJacob Faibussowitsch { 61134222ddf1SHong Zhang Mat_Product *product = C->product; 61144222ddf1SHong Zhang 61154222ddf1SHong Zhang PetscFunctionBegin; 611648a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61184222ddf1SHong Zhang } 6119394ed5ebSJunchao Zhang 612027430b45SBarry Smith /* 612127430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6122394ed5ebSJunchao Zhang 6123394ed5ebSJunchao Zhang Input Parameters: 6124394ed5ebSJunchao Zhang 6125651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6126651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6127394ed5ebSJunchao Zhang 6128158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6129394ed5ebSJunchao Zhang 6130394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6131394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6132394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6133394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6134394ed5ebSJunchao Zhang 6135394ed5ebSJunchao Zhang Similar for Set2. 6136394ed5ebSJunchao Zhang 6137394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6138394ed5ebSJunchao Zhang 6139158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6140394ed5ebSJunchao Zhang 6141394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6142394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6143394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6144394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6145394ed5ebSJunchao Zhang */ 6146d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6147d71ae5a4SJacob Faibussowitsch { 6148394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6149394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6150394ed5ebSJunchao Zhang 6151394ed5ebSJunchao Zhang PetscFunctionBegin; 61529566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6153394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6154394ed5ebSJunchao Zhang i[0] = 0; 6155394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6156394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6157394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6158394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6159394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6160394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6161394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6162394ed5ebSJunchao Zhang j[t] = j1[b1]; 6163394ed5ebSJunchao Zhang imap1[t1] = t; 6164394ed5ebSJunchao Zhang imap2[t2] = t; 6165394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6166394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61679371c9d4SSatish Balay t1++; 61689371c9d4SSatish Balay t2++; 61699371c9d4SSatish Balay t++; 6170394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6171394ed5ebSJunchao Zhang j[t] = j1[b1]; 6172394ed5ebSJunchao Zhang imap1[t1] = t; 6173394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61749371c9d4SSatish Balay t1++; 61759371c9d4SSatish Balay t++; 6176394ed5ebSJunchao Zhang } else { 6177394ed5ebSJunchao Zhang j[t] = j2[b2]; 6178394ed5ebSJunchao Zhang imap2[t2] = t; 6179394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61809371c9d4SSatish Balay t2++; 61819371c9d4SSatish Balay t++; 6182394ed5ebSJunchao Zhang } 6183394ed5ebSJunchao Zhang } 6184394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6185394ed5ebSJunchao Zhang while (b1 < e1) { 6186394ed5ebSJunchao Zhang j[t] = j1[b1]; 6187394ed5ebSJunchao Zhang imap1[t1] = t; 6188394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61899371c9d4SSatish Balay t1++; 61909371c9d4SSatish Balay t++; 6191394ed5ebSJunchao Zhang } 6192394ed5ebSJunchao Zhang while (b2 < e2) { 6193394ed5ebSJunchao Zhang j[t] = j2[b2]; 6194394ed5ebSJunchao Zhang imap2[t2] = t; 6195394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61969371c9d4SSatish Balay t2++; 61979371c9d4SSatish Balay t++; 6198394ed5ebSJunchao Zhang } 6199394ed5ebSJunchao Zhang i[r + 1] = t; 6200394ed5ebSJunchao Zhang } 62013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6202394ed5ebSJunchao Zhang } 6203394ed5ebSJunchao Zhang 620427430b45SBarry Smith /* 620527430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6206394ed5ebSJunchao Zhang 6207394ed5ebSJunchao Zhang Input Parameters: 6208394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6209394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6210394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6211394ed5ebSJunchao Zhang 6212394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6213394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6214394ed5ebSJunchao Zhang 6215394ed5ebSJunchao Zhang Output Parameters: 6216394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6217394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6218394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6219394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6220394ed5ebSJunchao Zhang 6221394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6222158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6223158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6224394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6225394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6226394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6227394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6228394ed5ebSJunchao Zhang 6229394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6230394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6231394ed5ebSJunchao Zhang 6232394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6233394ed5ebSJunchao Zhang 6234158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6235394ed5ebSJunchao Zhang */ 6236d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6237d71ae5a4SJacob Faibussowitsch { 6238394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6239394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6240394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6241394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6242394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6243394ed5ebSJunchao Zhang 6244394ed5ebSJunchao Zhang PetscFunctionBegin; 62459566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62469566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6247394ed5ebSJunchao Zhang m = rend - rstart; 6248394ed5ebSJunchao Zhang 6249651b1cf9SStefano Zampini /* Skip negative rows */ 6250651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62519371c9d4SSatish Balay if (i[k] >= 0) break; 6252394ed5ebSJunchao Zhang 6253394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6254394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6255394ed5ebSJunchao Zhang */ 6256394ed5ebSJunchao Zhang while (k < n) { 6257394ed5ebSJunchao Zhang row = i[k]; 6258394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62599371c9d4SSatish Balay for (s = k; s < n; s++) 62609371c9d4SSatish Balay if (i[s] != row) break; 6261651b1cf9SStefano Zampini 6262651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6263394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6264651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 626554c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6266394ed5ebSJunchao Zhang } 62679566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6268158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6269394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6270394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6271394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6272394ed5ebSJunchao Zhang 6273394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6274394ed5ebSJunchao Zhang Atot += mid - k; 6275394ed5ebSJunchao Zhang Btot += s - mid; 6276394ed5ebSJunchao Zhang 6277651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6278394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6279394ed5ebSJunchao Zhang col = j[p]; 62809371c9d4SSatish Balay do { 6281651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62829371c9d4SSatish Balay p++; 6283651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6284394ed5ebSJunchao Zhang Annz++; 6285394ed5ebSJunchao Zhang } 6286394ed5ebSJunchao Zhang 6287651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6288394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6289394ed5ebSJunchao Zhang col = j[p]; 6290d71ae5a4SJacob Faibussowitsch do { 6291d71ae5a4SJacob Faibussowitsch p++; 6292d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6293394ed5ebSJunchao Zhang Bnnz++; 6294394ed5ebSJunchao Zhang } 6295394ed5ebSJunchao Zhang k = s; 6296394ed5ebSJunchao Zhang } 6297394ed5ebSJunchao Zhang 6298394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6299158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6300158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6301158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6302158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6303394ed5ebSJunchao Zhang 63046aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6305394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6306394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6307394ed5ebSJunchao Zhang k = rowBegin[r]; 6308394ed5ebSJunchao Zhang mid = rowMid[r]; 6309394ed5ebSJunchao Zhang s = rowEnd[r]; 63108e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63118e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6312394ed5ebSJunchao Zhang Atot += mid - k; 6313394ed5ebSJunchao Zhang Btot += s - mid; 6314394ed5ebSJunchao Zhang 6315394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6316394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6317394ed5ebSJunchao Zhang col = j[p]; 6318394ed5ebSJunchao Zhang q = p; 6319d71ae5a4SJacob Faibussowitsch do { 6320d71ae5a4SJacob Faibussowitsch p++; 6321d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6322394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6323394ed5ebSJunchao Zhang Annz++; 6324394ed5ebSJunchao Zhang } 6325394ed5ebSJunchao Zhang 6326394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6327394ed5ebSJunchao Zhang col = j[p]; 6328394ed5ebSJunchao Zhang q = p; 6329d71ae5a4SJacob Faibussowitsch do { 6330d71ae5a4SJacob Faibussowitsch p++; 6331d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6332394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6333394ed5ebSJunchao Zhang Bnnz++; 6334394ed5ebSJunchao Zhang } 6335394ed5ebSJunchao Zhang } 6336394ed5ebSJunchao Zhang /* Output */ 6337394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6338394ed5ebSJunchao Zhang *Annz_ = Annz; 6339394ed5ebSJunchao Zhang *Atot_ = Atot; 6340394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6341394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6342394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6343394ed5ebSJunchao Zhang *Btot_ = Btot; 6344394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6346394ed5ebSJunchao Zhang } 6347394ed5ebSJunchao Zhang 634827430b45SBarry Smith /* 634927430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6350158ec288SJunchao Zhang 6351158ec288SJunchao Zhang Input Parameters: 6352158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6353158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6354158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6355651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6356158ec288SJunchao Zhang 6357158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6358158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6359158ec288SJunchao Zhang 6360158ec288SJunchao Zhang Example: 6361158ec288SJunchao Zhang nnz1 = 4 6362158ec288SJunchao Zhang nnz = 6 6363158ec288SJunchao Zhang imap = [1,3,4,5] 6364158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6365158ec288SJunchao Zhang then, 6366158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6367158ec288SJunchao Zhang */ 6368d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6369d71ae5a4SJacob Faibussowitsch { 6370158ec288SJunchao Zhang PetscCount k, p; 6371158ec288SJunchao Zhang 6372158ec288SJunchao Zhang PetscFunctionBegin; 6373158ec288SJunchao Zhang jmap_new[0] = 0; 6374158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6375158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6376158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6377158ec288SJunchao Zhang } 6378158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6380158ec288SJunchao Zhang } 6381158ec288SJunchao Zhang 63822c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63832c4ab24aSJunchao Zhang { 63842c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63852c4ab24aSJunchao Zhang 63862c4ab24aSJunchao Zhang PetscFunctionBegin; 63872c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63882c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63892c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63902c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64012c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64022c4ab24aSJunchao Zhang } 64032c4ab24aSJunchao Zhang 6404d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6405d71ae5a4SJacob Faibussowitsch { 6406394ed5ebSJunchao Zhang MPI_Comm comm; 6407394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6408394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6409394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6410394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64112c4ab24aSJunchao Zhang PetscContainer container; 64122c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6413394ed5ebSJunchao Zhang 6414394ed5ebSJunchao Zhang PetscFunctionBegin; 64159566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6417cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6418eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6419cbc6b225SStefano Zampini #else 64209566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6421cbc6b225SStefano Zampini #endif 64229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6423cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6424cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6425cbc6b225SStefano Zampini 64269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64299566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64309566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64319566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64329566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64349566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6435394ed5ebSJunchao Zhang 64366aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6437394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6438394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6439e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6440e8729f6fSJunchao Zhang 6441e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6442394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6443394ed5ebSJunchao Zhang 6444394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6445394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6446394ed5ebSJunchao Zhang will have positive row indices. 6447394ed5ebSJunchao Zhang */ 6448394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6449394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6450394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6451f7d195e4SLawrence Mitchell else { 6452f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6453f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6454f7d195e4SLawrence Mitchell } 6455394ed5ebSJunchao Zhang } 6456394ed5ebSJunchao Zhang 6457da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64589566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6459651b1cf9SStefano Zampini 6460651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6461651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64629371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6463651b1cf9SStefano Zampini PetscInt i1start = k; 6464651b1cf9SStefano Zampini 64659566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6466394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6467394ed5ebSJunchao Zhang 6468394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6469394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6470394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6471394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6472394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6473394ed5ebSJunchao Zhang const PetscInt *ranges; 6474394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6475394ed5ebSJunchao Zhang 64769566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6478394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6479394ed5ebSJunchao Zhang PetscMPIInt owner; 6480394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6481cbc6b225SStefano Zampini 6482394ed5ebSJunchao Zhang /* Locate a row range */ 6483394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64849566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6485394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6486394ed5ebSJunchao Zhang 6487394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64889566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6489394ed5ebSJunchao Zhang 6490394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6491394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6492394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6493394ed5ebSJunchao Zhang PetscInt *nentries2; 6494394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6495cbc6b225SStefano Zampini 64969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64999566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6500394ed5ebSJunchao Zhang sendto = sendto2; 6501394ed5ebSJunchao Zhang nentries = nentries2; 6502394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6503394ed5ebSJunchao Zhang } 6504394ed5ebSJunchao Zhang sendto[nsend] = owner; 6505394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65069566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6507394ed5ebSJunchao Zhang nsend++; 6508394ed5ebSJunchao Zhang k = p; 6509394ed5ebSJunchao Zhang } 6510394ed5ebSJunchao Zhang 6511394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6512394ed5ebSJunchao Zhang PetscSF sf1; 6513394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6514394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6515394ed5ebSJunchao Zhang PetscInt *offsets; 6516394ed5ebSJunchao Zhang PetscSFNode *iremote; 6517394ed5ebSJunchao Zhang 65189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6521394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6522394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6523394ed5ebSJunchao Zhang iremote[k].index = 0; 6524394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652554c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6526394ed5ebSJunchao Zhang } 65279566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65289566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65299566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65309566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 653163a3b9bcSJacob Faibussowitsch PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem); 6532394ed5ebSJunchao Zhang 6533394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6534394ed5ebSJunchao Zhang PetscSF sf2; 6535394ed5ebSJunchao Zhang nroots = nroots2; 6536394ed5ebSJunchao Zhang nleaves = nleaves2; 65379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65389566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6540394ed5ebSJunchao Zhang p = 0; 6541394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654254c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6543394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6544394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6545394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6546394ed5ebSJunchao Zhang } 6547394ed5ebSJunchao Zhang } 65489566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6549394ed5ebSJunchao Zhang 6550394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6551394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6552394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65539566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 65549566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 65559566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE)); 65569566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 65579566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE)); 6558394ed5ebSJunchao Zhang 65599566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65609566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6561394ed5ebSJunchao Zhang 6562394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6563394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65649566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6565394ed5ebSJunchao Zhang 6566651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6567651b1cf9SStefano Zampini PetscCount *Cperm1; 6568651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6569651b1cf9SStefano Zampini PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves)); 6570651b1cf9SStefano Zampini 6571651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6572651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6573651b1cf9SStefano Zampini PetscBool hypre; 6574651b1cf9SStefano Zampini const char *name; 6575651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6576651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6577651b1cf9SStefano Zampini if (hypre) { 6578651b1cf9SStefano Zampini PetscInt *minj; 6579651b1cf9SStefano Zampini PetscBT hasdiag; 6580651b1cf9SStefano Zampini 6581651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6582651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6583651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6584651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6585651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6586651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6587651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6588651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6589651b1cf9SStefano Zampini } 6590651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6591651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6592651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6593651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6594651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6595651b1cf9SStefano Zampini } 6596651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6597651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6598651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6599651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6600651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6601651b1cf9SStefano Zampini } 6602651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6603651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6604651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6605651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6606651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6607651b1cf9SStefano Zampini } 6608651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6609651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6610651b1cf9SStefano Zampini } 6611651b1cf9SStefano Zampini 6612651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6613651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6614651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6615651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6616394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6617394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6618394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6619394ed5ebSJunchao Zhang 6620651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66219566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6622651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66239566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6624394ed5ebSJunchao Zhang 6625394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6626394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6627394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6628394ed5ebSJunchao Zhang 66299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6633394ed5ebSJunchao Zhang 6634394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6635158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6636158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6637158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6638158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6639394ed5ebSJunchao Zhang 66409566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66419566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6642158ec288SJunchao Zhang 6643158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6644158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6645158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6646158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6647158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6648158ec288SJunchao Zhang 6649158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6650158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6651158ec288SJunchao Zhang 6652158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6653158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6654158ec288SJunchao Zhang 6655158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6656158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6657158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6658158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66599566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66609566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6661e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66629566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6663394ed5ebSJunchao Zhang 6664158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6665158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6666158ec288SJunchao Zhang 6667394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6668394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6669394ed5ebSJunchao Zhang PetscInt *Aj_new; 66709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66729566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6673394ed5ebSJunchao Zhang Aj = Aj_new; 6674394ed5ebSJunchao Zhang } 6675394ed5ebSJunchao Zhang 6676394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6677394ed5ebSJunchao Zhang PetscInt *Bj_new; 66789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66809566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6681394ed5ebSJunchao Zhang Bj = Bj_new; 6682394ed5ebSJunchao Zhang } 6683394ed5ebSJunchao Zhang 6684cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6685394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6686cbc6b225SStefano Zampini MatType rtype; 6687394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6688cf8ba265SJunchao Zhang PetscObjectState state; 66899566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6691394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66929371c9d4SSatish Balay if (cstart) { 66939371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66949371c9d4SSatish Balay } 66959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->A)); 66969566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 66979566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 66989566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66999566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67009566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67015bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6702cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6703cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6704cbc6b225SStefano Zampini 6705394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6706394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6707394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6708394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6709394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6710394ed5ebSJunchao Zhang 6711cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67129566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67139566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67159566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6716cbc6b225SStefano Zampini 67172c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67182c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67192c4ab24aSJunchao Zhang coo->n = coo_n; 67202c4ab24aSJunchao Zhang coo->sf = sf2; 67212c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67222c4ab24aSJunchao Zhang coo->recvlen = nroots; 67232c4ab24aSJunchao Zhang coo->Annz = Annz; 67242c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67252c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67262c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67272c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67282c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67292c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67302c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67312c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67322c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67332c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67342c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67352c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67362c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67372c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67382c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67392c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67402c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67412c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67422c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67432c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67442c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67452c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67462c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67472c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67482c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6750394ed5ebSJunchao Zhang } 6751394ed5ebSJunchao Zhang 6752d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6753d71ae5a4SJacob Faibussowitsch { 6754394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6755394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6756394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67572c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67582c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67592c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67602c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67612c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67622c4ab24aSJunchao Zhang PetscContainer container; 67632c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6764394ed5ebSJunchao Zhang 6765394ed5ebSJunchao Zhang PetscFunctionBegin; 67662c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67672c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67682c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67692c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67702c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67712c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67722c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67732c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67742c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67752c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67762c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67772c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67782c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67792c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67802c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67812c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67822c4ab24aSJunchao Zhang 67839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6785394ed5ebSJunchao Zhang 6786394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67872c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6788394ed5ebSJunchao Zhang 6789394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67902c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6791394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67922c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6793da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6794158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6795158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6796394ed5ebSJunchao Zhang } 67972c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6798158ec288SJunchao Zhang PetscScalar sum = 0.0; 6799158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6800158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6801394ed5ebSJunchao Zhang } 68022c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6803394ed5ebSJunchao Zhang 6804394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68052c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6806394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6807394ed5ebSJunchao Zhang } 68082c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6809394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6810394ed5ebSJunchao Zhang } 68119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6814394ed5ebSJunchao Zhang } 6815394ed5ebSJunchao Zhang 6816ccd8e176SBarry Smith /*MC 6817ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6818ccd8e176SBarry Smith 6819ccd8e176SBarry Smith Options Database Keys: 682011a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6821ccd8e176SBarry Smith 6822ccd8e176SBarry Smith Level: beginner 68230cd7f59aSBarry Smith 68240cd7f59aSBarry Smith Notes: 68252ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68260cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68270cd7f59aSBarry Smith in the matrix 68280cd7f59aSBarry Smith 682911a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 683011a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6831ccd8e176SBarry Smith 68321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6833ccd8e176SBarry Smith M*/ 6834d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6835d71ae5a4SJacob Faibussowitsch { 6836ccd8e176SBarry Smith Mat_MPIAIJ *b; 6837ccd8e176SBarry Smith PetscMPIInt size; 6838ccd8e176SBarry Smith 6839ccd8e176SBarry Smith PetscFunctionBegin; 68409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68412205254eSKarl Rupp 68424dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6843ccd8e176SBarry Smith B->data = (void *)b; 6844aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6845ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6846ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6847ccd8e176SBarry Smith b->size = size; 68482205254eSKarl Rupp 68499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6850ccd8e176SBarry Smith 6851ccd8e176SBarry Smith /* build cache for off array entries formed */ 68529566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68532205254eSKarl Rupp 6854ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6855f4259b30SLisandro Dalcin b->colmap = NULL; 6856f4259b30SLisandro Dalcin b->garray = NULL; 6857ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6858ccd8e176SBarry Smith 6859ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68600298fd71SBarry Smith b->lvec = NULL; 68610298fd71SBarry Smith b->Mvctx = NULL; 6862ccd8e176SBarry Smith 6863ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6864f4259b30SLisandro Dalcin b->rowindices = NULL; 6865f4259b30SLisandro Dalcin b->rowvalues = NULL; 6866ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6867ccd8e176SBarry Smith 6868f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68690298fd71SBarry Smith b->spptr = NULL; 6870f60c3dc2SHong Zhang 68719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68813d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68833d0639e7SStefano Zampini #endif 6884d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6885d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6886d5e393b6SSuyash Tandon #endif 68873d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68893d0639e7SStefano Zampini #endif 68909779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6892191b95cbSRichard Tran Mills #endif 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68975d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68995d7652ecSHong Zhang #endif 6900d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6902d24d4204SJose E. Roman #endif 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69053dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69083dad0653Sstefano_zampini #endif 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6915ccd8e176SBarry Smith } 691681824310SBarry Smith 6917cce60c4dSBarry Smith /*@C 691811a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 691903bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 692003bfb495SBarry Smith 6921d083f849SBarry Smith Collective 692203bfb495SBarry Smith 692303bfb495SBarry Smith Input Parameters: 692403bfb495SBarry Smith + comm - MPI communicator 692511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 692603bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 692711a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 69282ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69292ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69302ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6931483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 693204ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 693303bfb495SBarry Smith . a - matrix values 6934483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69352ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 693603bfb495SBarry Smith - oa - matrix values 693703bfb495SBarry Smith 693803bfb495SBarry Smith Output Parameter: 693903bfb495SBarry Smith . mat - the matrix 694003bfb495SBarry Smith 694103bfb495SBarry Smith Level: advanced 694203bfb495SBarry Smith 694303bfb495SBarry Smith Notes: 69442ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user 6945292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 694603bfb495SBarry Smith 69472ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 694803bfb495SBarry Smith 69492ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 695003bfb495SBarry Smith 69517b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69527b55108eSBarry Smith 6953dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6954dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6955dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6956dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 695711a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6958dca341c0SJed Brown communication if it is known that only local entries will be set. 695903bfb495SBarry Smith 69601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6961db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69622b26979fSBarry Smith @*/ 6963d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6964d71ae5a4SJacob Faibussowitsch { 696503bfb495SBarry Smith Mat_MPIAIJ *maij; 696603bfb495SBarry Smith 696703bfb495SBarry Smith PetscFunctionBegin; 696808401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6969aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6970aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69719566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69739566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 697403bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69752205254eSKarl Rupp 69768d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 697703bfb495SBarry Smith 69789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 698003bfb495SBarry Smith 69819566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69829566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 698303bfb495SBarry Smith 69849566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69879566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69889566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 699003bfb495SBarry Smith } 699103bfb495SBarry Smith 69924e84afc0SStefano Zampini typedef struct { 69934e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69944e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69954e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69964e84afc0SStefano Zampini 69974e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69984e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69994e84afc0SStefano Zampini PetscScalar *bufa; 70004e84afc0SStefano Zampini Mat P_oth; 70014e84afc0SStefano Zampini 70024e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7003ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70044e84afc0SStefano Zampini 7005ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70064e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70074e84afc0SStefano Zampini of the temporary storage */ 70084e84afc0SStefano Zampini PetscBool reusesym; 70094e84afc0SStefano Zampini 70104e84afc0SStefano Zampini /* support for COO values insertion */ 7011ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7012ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7013ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7014ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7015c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7016c215019aSStefano Zampini PetscMemType mtype; 70174e84afc0SStefano Zampini 70184e84afc0SStefano Zampini /* customization */ 70194e84afc0SStefano Zampini PetscBool abmerge; 7020abb89eb1SStefano Zampini PetscBool P_oth_bind; 70214e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70224e84afc0SStefano Zampini 7023ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7024d71ae5a4SJacob Faibussowitsch { 70254e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70264e84afc0SStefano Zampini PetscInt i; 70274e84afc0SStefano Zampini 70284e84afc0SStefano Zampini PetscFunctionBegin; 70299566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70309566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70319566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70329566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 703648a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70379566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70389566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70399566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70409566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70419566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70429566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70444e84afc0SStefano Zampini } 70454e84afc0SStefano Zampini 7046fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7047fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7048fff043a9SJunchao Zhang */ 7049d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7050d71ae5a4SJacob Faibussowitsch { 7051c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7052c215019aSStefano Zampini 7053c215019aSStefano Zampini PetscFunctionBegin; 70549566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7055c215019aSStefano Zampini if (f) { 70569566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7057c215019aSStefano Zampini } else { 7058c215019aSStefano Zampini const PetscScalar *vv; 7059c215019aSStefano Zampini 70609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7061c215019aSStefano Zampini if (n && idx) { 7062c215019aSStefano Zampini PetscScalar *w = v; 7063c215019aSStefano Zampini const PetscInt *oi = idx; 7064c215019aSStefano Zampini PetscInt j; 7065c215019aSStefano Zampini 7066c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7067c215019aSStefano Zampini } else { 70689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7069c215019aSStefano Zampini } 70709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7071c215019aSStefano Zampini } 70723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7073c215019aSStefano Zampini } 7074c215019aSStefano Zampini 7075d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7076d71ae5a4SJacob Faibussowitsch { 70774e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70784e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70794e84afc0SStefano Zampini 70804e84afc0SStefano Zampini PetscFunctionBegin; 70814e84afc0SStefano Zampini MatCheckProduct(C, 1); 708228b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70834e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70844e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 708548a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 708648a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70874e84afc0SStefano Zampini } 70884e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7089abb89eb1SStefano Zampini 7090abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 709108401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70929566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7093abb89eb1SStefano Zampini } 70944e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70954e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 70964e84afc0SStefano Zampini 70974e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70984e84afc0SStefano Zampini if (noff) { 7099c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7100c215019aSStefano Zampini 71019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71034e84afc0SStefano Zampini n_o += noff; 71044e84afc0SStefano Zampini n_d += nown; 71054e84afc0SStefano Zampini } else { 7106c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7107c215019aSStefano Zampini 71089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71094e84afc0SStefano Zampini n_d += mm->nz; 71104e84afc0SStefano Zampini } 71114e84afc0SStefano Zampini } 7112c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71139566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71149566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71154e84afc0SStefano Zampini } 71169566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71184e84afc0SStefano Zampini } 71194e84afc0SStefano Zampini 71204e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71214e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7122d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7123d71ae5a4SJacob Faibussowitsch { 71244e84afc0SStefano Zampini Mat_Product *product = C->product; 7125ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71264e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71274e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71284e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71294e84afc0SStefano Zampini IS glob = NULL; 71304e84afc0SStefano Zampini const char *prefix; 71314e84afc0SStefano Zampini char pprefix[256]; 71324e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 713382a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 713482a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7135ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7136ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7137ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7138ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7139ddea5d60SJunchao Zhang 71404e84afc0SStefano Zampini MatProductType ptype; 7141d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71424e84afc0SStefano Zampini PetscMPIInt size; 71434e84afc0SStefano Zampini 71444e84afc0SStefano Zampini PetscFunctionBegin; 71454e84afc0SStefano Zampini MatCheckProduct(C, 1); 714628b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71474e84afc0SStefano Zampini ptype = product->type; 7148b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7149fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7150fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7151fa046f9fSJunchao Zhang } 71524e84afc0SStefano Zampini switch (ptype) { 71534e84afc0SStefano Zampini case MATPRODUCT_AB: 71544e84afc0SStefano Zampini A = product->A; 71554e84afc0SStefano Zampini P = product->B; 71564e84afc0SStefano Zampini m = A->rmap->n; 71574e84afc0SStefano Zampini n = P->cmap->n; 71584e84afc0SStefano Zampini M = A->rmap->N; 71594e84afc0SStefano Zampini N = P->cmap->N; 7160ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71614e84afc0SStefano Zampini break; 71624e84afc0SStefano Zampini case MATPRODUCT_AtB: 71634e84afc0SStefano Zampini P = product->A; 71644e84afc0SStefano Zampini A = product->B; 71654e84afc0SStefano Zampini m = P->cmap->n; 71664e84afc0SStefano Zampini n = A->cmap->n; 71674e84afc0SStefano Zampini M = P->cmap->N; 71684e84afc0SStefano Zampini N = A->cmap->N; 71694e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71704e84afc0SStefano Zampini break; 71714e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71724e84afc0SStefano Zampini A = product->A; 71734e84afc0SStefano Zampini P = product->B; 71744e84afc0SStefano Zampini m = P->cmap->n; 71754e84afc0SStefano Zampini n = P->cmap->n; 71764e84afc0SStefano Zampini M = P->cmap->N; 71774e84afc0SStefano Zampini N = P->cmap->N; 71784e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71794e84afc0SStefano Zampini break; 7180d71ae5a4SJacob Faibussowitsch default: 7181d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71824e84afc0SStefano Zampini } 71839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71844e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71854e84afc0SStefano Zampini 71864e84afc0SStefano Zampini /* defaults */ 71874e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71884e84afc0SStefano Zampini mp[i] = NULL; 71894e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71904e84afc0SStefano Zampini rmapt[i] = -1; 71914e84afc0SStefano Zampini cmapt[i] = -1; 71924e84afc0SStefano Zampini rmapa[i] = NULL; 71934e84afc0SStefano Zampini cmapa[i] = NULL; 71944e84afc0SStefano Zampini } 71954e84afc0SStefano Zampini 71964e84afc0SStefano Zampini /* customization */ 71979566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71984e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71994e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72004e84afc0SStefano Zampini if (product->api_user) { 7201d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72029566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7204d0609cedSBarry Smith PetscOptionsEnd(); 72054e84afc0SStefano Zampini } else { 7206d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72079566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72089566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7209d0609cedSBarry Smith PetscOptionsEnd(); 7210abb89eb1SStefano Zampini } 7211abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7212abb89eb1SStefano Zampini if (product->api_user) { 7213d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72149566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7215d0609cedSBarry Smith PetscOptionsEnd(); 7216abb89eb1SStefano Zampini } else { 7217d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72189566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7219d0609cedSBarry Smith PetscOptionsEnd(); 72204e84afc0SStefano Zampini } 72214e84afc0SStefano Zampini } 72224e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72234e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72259566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72279566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72289566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7229ddea5d60SJunchao Zhang 7230ddea5d60SJunchao Zhang cp = 0; 72314e84afc0SStefano Zampini switch (ptype) { 72324e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72339566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72344e84afc0SStefano Zampini 7235ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7236ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72374e84afc0SStefano Zampini /* P is product->B */ 72389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72399566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72409566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72419566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72429566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72439566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72449566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72454e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72469566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72479566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72494e84afc0SStefano Zampini rmapt[cp] = 1; 72504e84afc0SStefano Zampini cmapt[cp] = 2; 72514e84afc0SStefano Zampini cmapa[cp] = globidx; 72524e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72534e84afc0SStefano Zampini cp++; 7254ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72559566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72569566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72579566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72589566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72599566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72609566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72614e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72629566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72639566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72644e84afc0SStefano Zampini rmapt[cp] = 1; 72654e84afc0SStefano Zampini cmapt[cp] = 1; 72664e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72674e84afc0SStefano Zampini cp++; 72689566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72709566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72729566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72739566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72744e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72769566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72774e84afc0SStefano Zampini rmapt[cp] = 1; 72784e84afc0SStefano Zampini cmapt[cp] = 2; 72794e84afc0SStefano Zampini cmapa[cp] = p->garray; 72804e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72814e84afc0SStefano Zampini cp++; 72824e84afc0SStefano Zampini } 7283ddea5d60SJunchao Zhang 7284ddea5d60SJunchao Zhang /* A_off * P_other */ 72854e84afc0SStefano Zampini if (mmdata->P_oth) { 72869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72879566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 72889566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 72899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72909566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72919566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72929566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72939566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72949566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72959566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72964e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72979566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72989566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72994e84afc0SStefano Zampini rmapt[cp] = 1; 73004e84afc0SStefano Zampini cmapt[cp] = 2; 73014e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73024e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73034e84afc0SStefano Zampini cp++; 73044e84afc0SStefano Zampini } 73054e84afc0SStefano Zampini break; 7306ddea5d60SJunchao Zhang 73074e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73084e84afc0SStefano Zampini /* A is product->B */ 73099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7310ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73119566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73129566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73139566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73149566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73159566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73169566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73174e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73189566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73199566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73214e84afc0SStefano Zampini rmapt[cp] = 2; 73224e84afc0SStefano Zampini rmapa[cp] = globidx; 73234e84afc0SStefano Zampini cmapt[cp] = 2; 73244e84afc0SStefano Zampini cmapa[cp] = globidx; 73254e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73264e84afc0SStefano Zampini cp++; 73274e84afc0SStefano Zampini } else { 73289566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73309566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73319566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73329566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73339566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73344e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73359566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73369566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73384e84afc0SStefano Zampini rmapt[cp] = 1; 73394e84afc0SStefano Zampini cmapt[cp] = 2; 73404e84afc0SStefano Zampini cmapa[cp] = globidx; 73414e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73424e84afc0SStefano Zampini cp++; 73439566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73459566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73469566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73479566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73489566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73494e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73509566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73519566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73524e84afc0SStefano Zampini rmapt[cp] = 2; 73534e84afc0SStefano Zampini rmapa[cp] = p->garray; 73544e84afc0SStefano Zampini cmapt[cp] = 2; 73554e84afc0SStefano Zampini cmapa[cp] = globidx; 73564e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73574e84afc0SStefano Zampini cp++; 73584e84afc0SStefano Zampini } 73594e84afc0SStefano Zampini break; 73604e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73619566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73624e84afc0SStefano Zampini /* P is product->B */ 73639566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73649566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73659566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73669566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73679566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73689566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73699566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73704e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73719566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73729566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73744e84afc0SStefano Zampini rmapt[cp] = 2; 73754e84afc0SStefano Zampini rmapa[cp] = globidx; 73764e84afc0SStefano Zampini cmapt[cp] = 2; 73774e84afc0SStefano Zampini cmapa[cp] = globidx; 73784e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73794e84afc0SStefano Zampini cp++; 73804e84afc0SStefano Zampini if (mmdata->P_oth) { 73819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73829566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 73839566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 73849566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73859566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73869566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73879566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73889566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73899566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73909566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73914e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73929566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73939566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73944e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73954e84afc0SStefano Zampini cp++; 73969566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73979566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73989566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73999566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74009566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74019566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74024e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74039566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74049566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74054e84afc0SStefano Zampini rmapt[cp] = 2; 74064e84afc0SStefano Zampini rmapa[cp] = globidx; 74074e84afc0SStefano Zampini cmapt[cp] = 2; 74084e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74094e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74104e84afc0SStefano Zampini cp++; 74114e84afc0SStefano Zampini } 74124e84afc0SStefano Zampini break; 7413d71ae5a4SJacob Faibussowitsch default: 7414d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74154e84afc0SStefano Zampini } 74164e84afc0SStefano Zampini /* sanity check */ 74179371c9d4SSatish Balay if (size > 1) 74189371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74194e84afc0SStefano Zampini 74209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7421ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7422ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7423ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7424ddea5d60SJunchao Zhang } 74254e84afc0SStefano Zampini mmdata->cp = cp; 74264e84afc0SStefano Zampini C->product->data = mmdata; 74274e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74284e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74294e84afc0SStefano Zampini 7430c215019aSStefano Zampini /* memory type */ 7431c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7433d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7435c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7436d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74373214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7438c215019aSStefano Zampini 74394e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7440ddea5d60SJunchao Zhang 7441ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7442ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7443ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7444ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7445ddea5d60SJunchao Zhang */ 74464e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74474e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74484e84afc0SStefano Zampini if (mptmp[cp]) continue; 7449ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74504e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74514e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74524e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74534e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74544e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74554e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74564e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74574e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7458ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7459ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74604e84afc0SStefano Zampini } 74614e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74624e84afc0SStefano Zampini } 7463ddea5d60SJunchao Zhang 7464ddea5d60SJunchao Zhang /* 7465ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7466ddea5d60SJunchao Zhang 7467ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7468ddea5d60SJunchao Zhang 7469d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7470ddea5d60SJunchao Zhang 7471ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7472ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7473ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7474ddea5d60SJunchao Zhang 7475ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7476da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7477ddea5d60SJunchao Zhang */ 74789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7480ddea5d60SJunchao Zhang 7481ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7482ddea5d60SJunchao Zhang if (hasoffproc) { 74834e84afc0SStefano Zampini PetscSF msf; 74844e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74854e84afc0SStefano Zampini 74869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7489ddea5d60SJunchao Zhang 74904e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74914e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74924e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74934e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7494ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74954e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74964e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74974e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74984e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74994e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75004e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75014e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75024e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75034e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75044e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75054e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75064e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75074e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7508ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75094e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75104e84afc0SStefano Zampini *coi++ = gr; 75114e84afc0SStefano Zampini *idxoff++ = j; 75124e84afc0SStefano Zampini } 75134e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75144e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75154e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75164e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75174e84afc0SStefano Zampini } else { /* offdiag */ 75184e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75194e84afc0SStefano Zampini } 75204e84afc0SStefano Zampini ncoo_o += nz; 7521ddea5d60SJunchao Zhang } else { /* this is a local row */ 75224e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75234e84afc0SStefano Zampini } 75244e84afc0SStefano Zampini } 75254e84afc0SStefano Zampini } 75264e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75274e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75284e84afc0SStefano Zampini } 75294e84afc0SStefano Zampini 75309566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75319566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75329566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75339566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75344e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75369566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75379566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75389566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75399566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75409566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7541ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75429566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75434e84afc0SStefano Zampini coo_i = coo_i2; 75444e84afc0SStefano Zampini coo_j = coo_j2; 75454e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75464e84afc0SStefano Zampini ncoo = ncoo_d; 75479566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7548c215019aSStefano Zampini 75499566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75509566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75519566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75524e84afc0SStefano Zampini } 7553c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75544e84afc0SStefano Zampini 7555ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75564e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75574e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75584e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75594e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75604e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75614e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75624e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75634e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75644e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75654e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75664e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75674e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75684e84afc0SStefano Zampini 75694e84afc0SStefano Zampini if (mptmp[cp]) continue; 7570ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7571ddea5d60SJunchao Zhang /* fill coo_i */ 75724e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75734e84afc0SStefano Zampini const PetscInt gr = i + rs; 75744e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75754e84afc0SStefano Zampini } 7576ddea5d60SJunchao Zhang /* fill coo_j */ 7577ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7579ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7580ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7581ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75824e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75834e84afc0SStefano Zampini } 75844e84afc0SStefano Zampini ncoo_d += mm->nz; 7585ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75864e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75874e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75884e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75894e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7590ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75914e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7592ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75934e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75944e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75954e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7596ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75974e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75984e84afc0SStefano Zampini } 75994e84afc0SStefano Zampini ncoo_d += nz; 76004e84afc0SStefano Zampini } 76014e84afc0SStefano Zampini } 76024e84afc0SStefano Zampini } 76034e84afc0SStefano Zampini } 760448a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 760648a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76079566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7608ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76099566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76104e84afc0SStefano Zampini 76114e84afc0SStefano Zampini /* preallocate with COO data */ 76129566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76139566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76154e84afc0SStefano Zampini } 76164e84afc0SStefano Zampini 7617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7618d71ae5a4SJacob Faibussowitsch { 76194e84afc0SStefano Zampini Mat_Product *product = mat->product; 76204e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76214e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7622abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76234e84afc0SStefano Zampini #else 76244e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76254e84afc0SStefano Zampini #endif 76264e84afc0SStefano Zampini 76274e84afc0SStefano Zampini PetscFunctionBegin; 76284e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76294e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 763048a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 763165e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7632abb89eb1SStefano Zampini switch (product->type) { 7633abb89eb1SStefano Zampini case MATPRODUCT_AB: 7634abb89eb1SStefano Zampini if (product->api_user) { 7635d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76369566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7637d0609cedSBarry Smith PetscOptionsEnd(); 7638abb89eb1SStefano Zampini } else { 7639d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76409566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7641d0609cedSBarry Smith PetscOptionsEnd(); 7642abb89eb1SStefano Zampini } 7643abb89eb1SStefano Zampini break; 7644abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7645abb89eb1SStefano Zampini if (product->api_user) { 7646d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76479566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7648d0609cedSBarry Smith PetscOptionsEnd(); 7649abb89eb1SStefano Zampini } else { 7650d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7652d0609cedSBarry Smith PetscOptionsEnd(); 7653abb89eb1SStefano Zampini } 7654abb89eb1SStefano Zampini break; 7655abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7656abb89eb1SStefano Zampini if (product->api_user) { 7657d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76589566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7659d0609cedSBarry Smith PetscOptionsEnd(); 7660abb89eb1SStefano Zampini } else { 7661d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76629566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7663d0609cedSBarry Smith PetscOptionsEnd(); 7664abb89eb1SStefano Zampini } 7665abb89eb1SStefano Zampini break; 7666d71ae5a4SJacob Faibussowitsch default: 7667d71ae5a4SJacob Faibussowitsch break; 7668abb89eb1SStefano Zampini } 7669abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7670abb89eb1SStefano Zampini } 76714e84afc0SStefano Zampini #endif 76724e84afc0SStefano Zampini if (match) { 76734e84afc0SStefano Zampini switch (product->type) { 76744e84afc0SStefano Zampini case MATPRODUCT_AB: 76754e84afc0SStefano Zampini case MATPRODUCT_AtB: 7676d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7677d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7678d71ae5a4SJacob Faibussowitsch break; 7679d71ae5a4SJacob Faibussowitsch default: 7680d71ae5a4SJacob Faibussowitsch break; 76814e84afc0SStefano Zampini } 76824e84afc0SStefano Zampini } 76834e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76849566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768681824310SBarry Smith } 768798921bdaSJacob Faibussowitsch 768898921bdaSJacob Faibussowitsch /* 768972833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 769072833a62Smarkadams4 769172833a62Smarkadams4 n - the number of block indices in cc[] 769272833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 769372833a62Smarkadams4 */ 7694d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7695d71ae5a4SJacob Faibussowitsch { 769672833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 769772833a62Smarkadams4 const PetscInt *idx; 769872833a62Smarkadams4 769972833a62Smarkadams4 PetscFunctionBegin; 770072833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 770172833a62Smarkadams4 if (nidx) { 770272833a62Smarkadams4 cnt = 0; 770372833a62Smarkadams4 cc[cnt] = idx[0] / bs; 770472833a62Smarkadams4 for (j = 1; j < nidx; j++) { 770572833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 770672833a62Smarkadams4 } 770772833a62Smarkadams4 } 770872833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 770972833a62Smarkadams4 *n = cnt + 1; 77103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771172833a62Smarkadams4 } 771272833a62Smarkadams4 771372833a62Smarkadams4 /* 771472833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 771572833a62Smarkadams4 771672833a62Smarkadams4 ncollapsed - the number of block indices 771772833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 771872833a62Smarkadams4 */ 7719d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7720d71ae5a4SJacob Faibussowitsch { 772172833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 772272833a62Smarkadams4 772372833a62Smarkadams4 PetscFunctionBegin; 772472833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 772572833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 772672833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 772772833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77289371c9d4SSatish Balay cprevtmp = cprev; 77299371c9d4SSatish Balay cprev = merged; 77309371c9d4SSatish Balay merged = cprevtmp; 773172833a62Smarkadams4 } 773272833a62Smarkadams4 *ncollapsed = nprev; 773372833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773572833a62Smarkadams4 } 773672833a62Smarkadams4 77372d776b49SBarry Smith /* 773872833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 773972833a62Smarkadams4 774072833a62Smarkadams4 Input Parameter: 774172833a62Smarkadams4 . Amat - matrix 774272833a62Smarkadams4 - symmetrize - make the result symmetric 774372833a62Smarkadams4 + scale - scale with diagonal 774472833a62Smarkadams4 774572833a62Smarkadams4 Output Parameter: 774672833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 774772833a62Smarkadams4 774872833a62Smarkadams4 */ 7749e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7750d71ae5a4SJacob Faibussowitsch { 775172833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 775272833a62Smarkadams4 MPI_Comm comm; 775372833a62Smarkadams4 Mat Gmat; 775472833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 775572833a62Smarkadams4 Mat a, b, c; 775672833a62Smarkadams4 MatType jtype; 775772833a62Smarkadams4 775872833a62Smarkadams4 PetscFunctionBegin; 775972833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 776072833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 776172833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 776272833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 776372833a62Smarkadams4 nloc = (Iend - Istart) / bs; 776472833a62Smarkadams4 776572833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 776672833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 776772833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 776872833a62Smarkadams4 776972833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 777072833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 777172833a62Smarkadams4 implementation */ 777272833a62Smarkadams4 if (bs > 1) { 777372833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 777472833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 777572833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 777672833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 777772833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 777872833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 777972833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77802cf69117Smarkadams4 MatScalar *aa, val, *AA; 77812cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77829371c9d4SSatish Balay if (isseqaij) { 77839371c9d4SSatish Balay a = Amat; 77849371c9d4SSatish Balay b = NULL; 77859371c9d4SSatish Balay } else { 778672833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77879371c9d4SSatish Balay a = d->A; 77889371c9d4SSatish Balay b = d->B; 778972833a62Smarkadams4 } 779072833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 779172833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 779272833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77932cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 779459ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 779559ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 779659ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 779759ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 779859ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 779972833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 780059ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 780159ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 780259ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 780359ee9f9fSPierre Jolivet else { 780459ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 780559ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 780659ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 780772833a62Smarkadams4 } 780859ee9f9fSPierre Jolivet } 780959ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 781059ee9f9fSPierre Jolivet } 781159ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 781272833a62Smarkadams4 if (!ok) { 781372833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 781459ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 781572833a62Smarkadams4 goto old_bs; 781672833a62Smarkadams4 } 781772833a62Smarkadams4 } 781872833a62Smarkadams4 } 781972833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 782072833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 782172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78222cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 782372833a62Smarkadams4 // diag 782472833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 782572833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 782672833a62Smarkadams4 ai = aseq->i; 782772833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 782872833a62Smarkadams4 aj = aseq->j + ai[brow]; 782972833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 783072833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 783172833a62Smarkadams4 val = 0; 7832e02fb3cdSMark Adams if (index_size == 0) { 783372833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 783472833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 783572833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 783672833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 783772833a62Smarkadams4 } 783872833a62Smarkadams4 } 7839e02fb3cdSMark Adams } else { // use (index,index) value if provided 7840e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7841e02fb3cdSMark Adams int ii = index[iii]; 7842e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7843e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7844e02fb3cdSMark Adams int jj = index[jjj]; 7845cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7846e02fb3cdSMark Adams } 7847e02fb3cdSMark Adams } 7848e02fb3cdSMark Adams } 784959ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 785072833a62Smarkadams4 AA[k / bs] = val; 785172833a62Smarkadams4 } 785272833a62Smarkadams4 grow = Istart / bs + brow / bs; 785372833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES)); 785472833a62Smarkadams4 } 785572833a62Smarkadams4 // off-diag 785672833a62Smarkadams4 if (ismpiaij) { 785772833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 785872833a62Smarkadams4 const PetscScalar *vals; 785972833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 786072833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 786172833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 786272833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 786372833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 786459ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 786572833a62Smarkadams4 AA[k / bs] = 0; 786672833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 786772833a62Smarkadams4 } 786872833a62Smarkadams4 nc = ncols / bs; 786972833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7870e02fb3cdSMark Adams if (index_size == 0) { 787172833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 787272833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 787372833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 787472833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 787559ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 787672833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 787772833a62Smarkadams4 } 787872833a62Smarkadams4 } 787972833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 788072833a62Smarkadams4 } 7881e02fb3cdSMark Adams } else { // use (index,index) value if provided 7882e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7883e02fb3cdSMark Adams int ii = index[iii]; 7884e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7885e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7886e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7887e02fb3cdSMark Adams int jj = index[jjj]; 7888e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7889e02fb3cdSMark Adams } 7890e02fb3cdSMark Adams } 7891e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7892e02fb3cdSMark Adams } 7893e02fb3cdSMark Adams } 789472833a62Smarkadams4 grow = Istart / bs + brow / bs; 789572833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES)); 789672833a62Smarkadams4 } 789772833a62Smarkadams4 } 789872833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 789972833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79002cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 790172833a62Smarkadams4 } else { 790272833a62Smarkadams4 const PetscScalar *vals; 790372833a62Smarkadams4 const PetscInt *idx; 790472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 790572833a62Smarkadams4 old_bs: 790672833a62Smarkadams4 /* 790772833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 790872833a62Smarkadams4 */ 790972833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 791072833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 791172833a62Smarkadams4 if (isseqaij) { 791272833a62Smarkadams4 PetscInt max_d_nnz; 791372833a62Smarkadams4 /* 791472833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 791572833a62Smarkadams4 */ 791672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 791772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 791872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 791948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792172833a62Smarkadams4 } else if (ismpiaij) { 792272833a62Smarkadams4 Mat Daij, Oaij; 792372833a62Smarkadams4 const PetscInt *garray; 792472833a62Smarkadams4 PetscInt max_d_nnz; 792572833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 792672833a62Smarkadams4 /* 792772833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 792872833a62Smarkadams4 */ 792972833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 793072833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793172833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793248a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793372833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793472833a62Smarkadams4 /* 793572833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 793672833a62Smarkadams4 */ 793772833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 793872833a62Smarkadams4 o_nnz[jj] = 0; 793972833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 794072833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794172833a62Smarkadams4 o_nnz[jj] += ncols; 794272833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794372833a62Smarkadams4 } 794472833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 794572833a62Smarkadams4 } 794672833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 794772833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 794872833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 794972833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 795072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 795172833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 795272833a62Smarkadams4 PetscInt dest_row = Ii / bs; 795372833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 795472833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 795572833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 795672833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 795772833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 795872833a62Smarkadams4 } 795972833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 796072833a62Smarkadams4 } 796172833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 796272833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 796372833a62Smarkadams4 } 796472833a62Smarkadams4 } else { 79652d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79662d776b49SBarry Smith else { 79672d776b49SBarry Smith Gmat = Amat; 79682d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79692d776b49SBarry Smith } 79709371c9d4SSatish Balay if (isseqaij) { 79719371c9d4SSatish Balay a = Gmat; 79729371c9d4SSatish Balay b = NULL; 79739371c9d4SSatish Balay } else { 797472833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79759371c9d4SSatish Balay a = d->A; 79769371c9d4SSatish Balay b = d->B; 797772833a62Smarkadams4 } 79782d776b49SBarry Smith if (filter >= 0 || scale) { 79792d776b49SBarry Smith /* take absolute value of each entry */ 798072833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 798172833a62Smarkadams4 MatInfo info; 798272833a62Smarkadams4 PetscScalar *avals; 798372833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 798472833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 798572833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 798672833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 798772833a62Smarkadams4 } 798872833a62Smarkadams4 } 79892d776b49SBarry Smith } 799072833a62Smarkadams4 if (symmetrize) { 7991b94d7dedSBarry Smith PetscBool isset, issym; 7992b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 7993b94d7dedSBarry Smith if (!isset || !issym) { 799472833a62Smarkadams4 Mat matTrans; 799572833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 79961fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 799772833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 799872833a62Smarkadams4 } 799972833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80002d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 800172833a62Smarkadams4 if (scale) { 800272833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 800372833a62Smarkadams4 Vec diag; 800472833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 800572833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 800672833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 800772833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 800872833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 800972833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 801072833a62Smarkadams4 } 801172833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80122d776b49SBarry Smith 80132d776b49SBarry Smith if (filter >= 0) { 80142ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80152ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80162d776b49SBarry Smith } 801772833a62Smarkadams4 *a_Gmat = Gmat; 80183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 801972833a62Smarkadams4 } 802072833a62Smarkadams4 802172833a62Smarkadams4 /* 802298921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 802398921bdaSJacob Faibussowitsch */ 802498921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h> 802598921bdaSJacob Faibussowitsch 802698921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80279566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80289566063dSJacob Faibussowitsch #undef PetscCall 80299371c9d4SSatish Balay #define PetscCall(...) \ 80309371c9d4SSatish Balay do { \ 80315f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 803298921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 803398921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 803498921bdaSJacob Faibussowitsch return; \ 803598921bdaSJacob Faibussowitsch } \ 803698921bdaSJacob Faibussowitsch } while (0) 803798921bdaSJacob Faibussowitsch 803898921bdaSJacob Faibussowitsch #undef SETERRQ 80399371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80409371c9d4SSatish Balay do { \ 804198921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 804298921bdaSJacob Faibussowitsch return; \ 804398921bdaSJacob Faibussowitsch } while (0) 804498921bdaSJacob Faibussowitsch 804598921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 804698921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 804798921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 804898921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 804998921bdaSJacob Faibussowitsch #else 805098921bdaSJacob Faibussowitsch #endif 8051d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8052d71ae5a4SJacob Faibussowitsch { 805398921bdaSJacob Faibussowitsch Mat mat = *mmat; 805498921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 805598921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 805698921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 805798921bdaSJacob Faibussowitsch PetscScalar value; 805898921bdaSJacob Faibussowitsch 805998921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 806098921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80615f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 806298921bdaSJacob Faibussowitsch { 806398921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 806498921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 806598921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 806698921bdaSJacob Faibussowitsch 806798921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 806898921bdaSJacob Faibussowitsch Mat A = aij->A; 806998921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 807098921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 807198921bdaSJacob Faibussowitsch MatScalar *aa; 807298921bdaSJacob Faibussowitsch PetscBool ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 807398921bdaSJacob Faibussowitsch Mat B = aij->B; 807498921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 807598921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 807698921bdaSJacob Faibussowitsch MatScalar *ba; 807798921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 807898921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 807998921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 808098921bdaSJacob Faibussowitsch 808198921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 808298921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 808398921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 808498921bdaSJacob Faibussowitsch 808598921bdaSJacob Faibussowitsch PetscFunctionBegin; 80869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 808898921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 808998921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 80906bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 809198921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 809298921bdaSJacob Faibussowitsch row = im[i] - rstart; 809398921bdaSJacob Faibussowitsch lastcol1 = -1; 809498921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 809598921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 809698921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 809798921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 809898921bdaSJacob Faibussowitsch low1 = 0; 809998921bdaSJacob Faibussowitsch high1 = nrow1; 810098921bdaSJacob Faibussowitsch lastcol2 = -1; 810198921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 810298921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 810398921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 810498921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 810598921bdaSJacob Faibussowitsch low2 = 0; 810698921bdaSJacob Faibussowitsch high2 = nrow2; 810798921bdaSJacob Faibussowitsch 810898921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 810998921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 811098921bdaSJacob Faibussowitsch else value = v[i + j * m]; 811198921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 811298921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 811398921bdaSJacob Faibussowitsch col = in[j] - cstart; 811498921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 811598921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 811698921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 811763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 811898921bdaSJacob Faibussowitsch } else { 811998921bdaSJacob Faibussowitsch if (mat->was_assembled) { 812048a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 812198921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8122eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 812398921bdaSJacob Faibussowitsch col--; 812498921bdaSJacob Faibussowitsch #else 812598921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 812698921bdaSJacob Faibussowitsch #endif 812798921bdaSJacob Faibussowitsch if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 81289566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 812998921bdaSJacob Faibussowitsch col = in[j]; 813098921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 813198921bdaSJacob Faibussowitsch B = aij->B; 813298921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81339371c9d4SSatish Balay bimax = b->imax; 81349371c9d4SSatish Balay bi = b->i; 81359371c9d4SSatish Balay bilen = b->ilen; 81369371c9d4SSatish Balay bj = b->j; 813798921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 813898921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 813998921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 814098921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814198921bdaSJacob Faibussowitsch low2 = 0; 814298921bdaSJacob Faibussowitsch high2 = nrow2; 814398921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 814498921bdaSJacob Faibussowitsch ba = b->a; 814598921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 814698921bdaSJacob Faibussowitsch } 814798921bdaSJacob Faibussowitsch } else col = in[j]; 814898921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 814998921bdaSJacob Faibussowitsch } 815098921bdaSJacob Faibussowitsch } 815198921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 815298921bdaSJacob Faibussowitsch if (roworiented) { 81539566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 815498921bdaSJacob Faibussowitsch } else { 81559566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 815698921bdaSJacob Faibussowitsch } 815798921bdaSJacob Faibussowitsch } 815898921bdaSJacob Faibussowitsch } 81599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 816198921bdaSJacob Faibussowitsch } 816298921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 816398921bdaSJacob Faibussowitsch } 816472833a62Smarkadams4 816598921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 816698921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 816798921bdaSJacob Faibussowitsch * original definitions */ 81689566063dSJacob Faibussowitsch #undef PetscCall 816998921bdaSJacob Faibussowitsch #undef SETERRQ 8170