xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 9939a2d15d16a77a1e35a732e34c6b02a2ee6e47)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663120d049SRichard Tran Mills 
1673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
168f74ef234SStefano Zampini }
169f74ef234SStefano Zampini 
170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
171d71ae5a4SJacob Faibussowitsch {
17226bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17326bda2c4Sstefano_zampini 
17426bda2c4Sstefano_zampini   PetscFunctionBegin;
17546533700Sstefano_zampini   if (mat->A) {
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1779566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17846533700Sstefano_zampini   }
1793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18026bda2c4Sstefano_zampini }
18126bda2c4Sstefano_zampini 
182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
183d71ae5a4SJacob Faibussowitsch {
18427d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18627d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18727d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
188ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18927d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
19027d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19127d4218bSShri Abhyankar 
19227d4218bSShri Abhyankar   PetscFunctionBegin;
193f4259b30SLisandro Dalcin   *keptrows = NULL;
194ce496241SStefano Zampini 
19527d4218bSShri Abhyankar   ia = a->i;
19627d4218bSShri Abhyankar   ib = b->i;
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19927d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
20027d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20127d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20227d4218bSShri Abhyankar     if (!na && !nb) {
20327d4218bSShri Abhyankar       cnt++;
20427d4218bSShri Abhyankar       goto ok1;
20527d4218bSShri Abhyankar     }
206ce496241SStefano Zampini     aa = aav + ia[i];
20727d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20827d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20927d4218bSShri Abhyankar     }
2108e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21127d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21227d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21327d4218bSShri Abhyankar     }
21427d4218bSShri Abhyankar     cnt++;
21527d4218bSShri Abhyankar   ok1:;
21627d4218bSShri Abhyankar   }
2171c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
218ce496241SStefano Zampini   if (!n0rows) {
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
222ce496241SStefano Zampini   }
2239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22427d4218bSShri Abhyankar   cnt = 0;
22527d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22627d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22727d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22827d4218bSShri Abhyankar     if (!na && !nb) continue;
229ce496241SStefano Zampini     aa = aav + ia[i];
23027d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23127d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23227d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23327d4218bSShri Abhyankar         goto ok2;
23427d4218bSShri Abhyankar       }
23527d4218bSShri Abhyankar     }
2368e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23727d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23827d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23927d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
24027d4218bSShri Abhyankar         goto ok2;
24127d4218bSShri Abhyankar       }
24227d4218bSShri Abhyankar     }
24327d4218bSShri Abhyankar   ok2:;
24427d4218bSShri Abhyankar   }
2459566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24927d4218bSShri Abhyankar }
25027d4218bSShri Abhyankar 
251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
252d71ae5a4SJacob Faibussowitsch {
25399e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25494342113SStefano Zampini   PetscBool   cong;
25599e65526SBarry Smith 
25699e65526SBarry Smith   PetscFunctionBegin;
2579566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25894342113SStefano Zampini   if (Y->assembled && cong) {
2599566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
26099e65526SBarry Smith   } else {
2619566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26299e65526SBarry Smith   }
2633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26499e65526SBarry Smith }
26599e65526SBarry Smith 
266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
267d71ae5a4SJacob Faibussowitsch {
268f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
269f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
270f1f41ecbSJed Brown 
271f1f41ecbSJed Brown   PetscFunctionBegin;
2720298fd71SBarry Smith   *zrows = NULL;
2739566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2749566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
275f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2769566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278f1f41ecbSJed Brown }
279f1f41ecbSJed Brown 
280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
281d71ae5a4SJacob Faibussowitsch {
2820716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
283a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2840716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2850716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2860716a85fSBarry Smith   PetscReal         *work;
287ce496241SStefano Zampini   const PetscScalar *dummy;
2880716a85fSBarry Smith 
2890716a85fSBarry Smith   PetscFunctionBegin;
2909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
296857cbf51SRichard Tran Mills   if (type == NORM_2) {
297ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
298ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
299857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
300ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
301ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
302857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
303ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
304ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
306ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
307ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
309ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
310ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
311857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
312857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3131c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3140716a85fSBarry Smith   } else {
3151c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3160716a85fSBarry Smith   }
3179566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
318857cbf51SRichard Tran Mills   if (type == NORM_2) {
319a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
320857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
321a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3220716a85fSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3240716a85fSBarry Smith }
3250716a85fSBarry Smith 
326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
327d71ae5a4SJacob Faibussowitsch {
328e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
329e52d2c62SBarry Smith   IS              sis, gis;
330e52d2c62SBarry Smith   const PetscInt *isis, *igis;
331e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
332e52d2c62SBarry Smith 
333e52d2c62SBarry Smith   PetscFunctionBegin;
3349566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3359566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
340e52d2c62SBarry Smith 
3419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
344e52d2c62SBarry Smith   n = ngis + nsis;
3459566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3469566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
347e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3489566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
349e52d2c62SBarry Smith 
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355e52d2c62SBarry Smith }
356e52d2c62SBarry Smith 
357dd6ea824SBarry Smith /*
3580f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3600f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36272fa4726SStefano Zampini has an order N integer array but is fast to access.
3639e25ed09SBarry Smith */
364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
365d71ae5a4SJacob Faibussowitsch {
36644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
367d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
368dbb450caSBarry Smith 
3693a40ed3dSBarry Smith   PetscFunctionBegin;
37008401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
372eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
373c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
374b1fc9764SSatish Balay #else
3759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
376905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
377b1fc9764SSatish Balay #endif
3783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3799e25ed09SBarry Smith }
3809e25ed09SBarry Smith 
381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
382a8f51744SPierre Jolivet   do { \
383db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
384db4deed7SKarl Rupp     else high1 = nrow1; \
385fd3458f5SBarry Smith     lastcol1 = col; \
386fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
387fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
388fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
389fd3458f5SBarry Smith       else low1 = t; \
390ba4e3ef2SSatish Balay     } \
391fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
392fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
393fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3940c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3950c0d7e18SFande Kong           ap1[_i] += value; \
3960c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3970c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3989371c9d4SSatish Balay         } else ap1[_i] = value; \
39930770e4dSSatish Balay         goto a_noinsert; \
4000520107fSSatish Balay       } \
4010520107fSSatish Balay     } \
4029371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4039371c9d4SSatish Balay       low1  = 0; \
4049371c9d4SSatish Balay       high1 = nrow1; \
4059371c9d4SSatish Balay       goto a_noinsert; \
4069371c9d4SSatish Balay     } \
4079371c9d4SSatish Balay     if (nonew == 1) { \
4089371c9d4SSatish Balay       low1  = 0; \
4099371c9d4SSatish Balay       high1 = nrow1; \
4109371c9d4SSatish Balay       goto a_noinsert; \
4119371c9d4SSatish Balay     } \
41208401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
413fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4149371c9d4SSatish Balay     N = nrow1++ - 1; \
4159371c9d4SSatish Balay     a->nz++; \
4169371c9d4SSatish Balay     high1++; \
4170520107fSSatish Balay     /* shift up all the later entries in this row */ \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4199566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
420fd3458f5SBarry Smith     rp1[_i] = col; \
421fd3458f5SBarry Smith     ap1[_i] = value; \
422e56f5c9eSBarry Smith     A->nonzerostate++; \
42330770e4dSSatish Balay   a_noinsert:; \
424fd3458f5SBarry Smith     ailen[row] = nrow1; \
425a8f51744SPierre Jolivet   } while (0)
4260a198c4cSBarry Smith 
427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
428a8f51744SPierre Jolivet   do { \
429db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
430db4deed7SKarl Rupp     else high2 = nrow2; \
431fd3458f5SBarry Smith     lastcol2 = col; \
432fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
433fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
434fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
435fd3458f5SBarry Smith       else low2 = t; \
436ba4e3ef2SSatish Balay     } \
437fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
438fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
439fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4400c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4410c0d7e18SFande Kong           ap2[_i] += value; \
4420c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4439371c9d4SSatish Balay         } else ap2[_i] = value; \
44430770e4dSSatish Balay         goto b_noinsert; \
44530770e4dSSatish Balay       } \
44630770e4dSSatish Balay     } \
4479371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4489371c9d4SSatish Balay       low2  = 0; \
4499371c9d4SSatish Balay       high2 = nrow2; \
4509371c9d4SSatish Balay       goto b_noinsert; \
4519371c9d4SSatish Balay     } \
4529371c9d4SSatish Balay     if (nonew == 1) { \
4539371c9d4SSatish Balay       low2  = 0; \
4549371c9d4SSatish Balay       high2 = nrow2; \
4559371c9d4SSatish Balay       goto b_noinsert; \
4569371c9d4SSatish Balay     } \
45708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
458fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4599371c9d4SSatish Balay     N = nrow2++ - 1; \
4609371c9d4SSatish Balay     b->nz++; \
4619371c9d4SSatish Balay     high2++; \
46230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
465fd3458f5SBarry Smith     rp2[_i] = col; \
466fd3458f5SBarry Smith     ap2[_i] = value; \
467e56f5c9eSBarry Smith     B->nonzerostate++; \
46830770e4dSSatish Balay   b_noinsert:; \
469fd3458f5SBarry Smith     bilen[row] = nrow2; \
470a8f51744SPierre Jolivet   } while (0)
47130770e4dSSatish Balay 
472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
473d71ae5a4SJacob Faibussowitsch {
4742fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4752fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4762fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
477fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4782fd7e33dSBarry Smith 
4792fd7e33dSBarry Smith   PetscFunctionBegin;
4802fd7e33dSBarry Smith   /* code only works for square matrices A */
4812fd7e33dSBarry Smith 
4822fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4839566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4842fd7e33dSBarry Smith   row = row - diag;
4852fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4862fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4872fd7e33dSBarry Smith   }
488fff043a9SJunchao Zhang   if (l) {
4899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4909566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4919566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
492fff043a9SJunchao Zhang   }
4932fd7e33dSBarry Smith 
4942fd7e33dSBarry Smith   /* diagonal part */
495fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4979566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
499fff043a9SJunchao Zhang   }
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* right of diagonal part */
502fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5049566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5059566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
506fff043a9SJunchao Zhang   }
5073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5082fd7e33dSBarry Smith }
5092fd7e33dSBarry Smith 
510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
511d71ae5a4SJacob Faibussowitsch {
51244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
513071fcb05SBarry Smith   PetscScalar value = 0.0;
514d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
515d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
516ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5178a729477SBarry Smith 
5180520107fSSatish Balay   /* Some Variables required in the macro */
5194ee7247eSSatish Balay   Mat         A     = aij->A;
5204ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52157809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
522ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52330770e4dSSatish Balay   Mat         B                 = aij->B;
52430770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
525d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
526ce496241SStefano Zampini   MatScalar  *aa, *ba;
527fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5288d76821aSHong Zhang   PetscInt    nonew;
529a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5304ee7247eSSatish Balay 
5313a40ed3dSBarry Smith   PetscFunctionBegin;
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5348a729477SBarry Smith   for (i = 0; i < m; i++) {
5355ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53608401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5374b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5384b0e389bSBarry Smith       row      = im[i] - rstart;
539fd3458f5SBarry Smith       lastcol1 = -1;
5408e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5418e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
542fd3458f5SBarry Smith       rmax1    = aimax[row];
543fd3458f5SBarry Smith       nrow1    = ailen[row];
544fd3458f5SBarry Smith       low1     = 0;
545fd3458f5SBarry Smith       high1    = nrow1;
546fd3458f5SBarry Smith       lastcol2 = -1;
5478e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5488e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
549fd3458f5SBarry Smith       rmax2    = bimax[row];
550d498b1e9SBarry Smith       nrow2    = bilen[row];
551fd3458f5SBarry Smith       low2     = 0;
552fd3458f5SBarry Smith       high2    = nrow2;
553fd3458f5SBarry Smith 
5541eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
555071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
556c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
557fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
558fd3458f5SBarry Smith           col   = in[j] - cstart;
5598d76821aSHong Zhang           nonew = a->nonew;
560d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
561f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
562f7d195e4SLawrence Mitchell           continue;
563f7d195e4SLawrence Mitchell         } else {
564f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
565227d817aSBarry Smith           if (mat->was_assembled) {
56648a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
568eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
569fa46199cSSatish Balay             col--;
570b1fc9764SSatish Balay #else
571905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
572b1fc9764SSatish Balay #endif
573fff043a9SJunchao Zhang             if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */
5749566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));                 /* Change aij->B from reduced/local format to expanded/global format */
5754b0e389bSBarry Smith               col = in[j];
5769bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
577f9508a3cSSatish Balay               B     = aij->B;
578f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5799371c9d4SSatish Balay               bimax = b->imax;
5809371c9d4SSatish Balay               bi    = b->i;
5819371c9d4SSatish Balay               bilen = b->ilen;
5829371c9d4SSatish Balay               bj    = b->j;
5839371c9d4SSatish Balay               ba    = b->a;
584d498b1e9SBarry Smith               rp2   = bj + bi[row];
585d498b1e9SBarry Smith               ap2   = ba + bi[row];
586d498b1e9SBarry Smith               rmax2 = bimax[row];
587d498b1e9SBarry Smith               nrow2 = bilen[row];
588d498b1e9SBarry Smith               low2  = 0;
589d498b1e9SBarry Smith               high2 = nrow2;
590d0f46423SBarry Smith               bm    = aij->B->rmap->n;
591f9508a3cSSatish Balay               ba    = b->a;
592d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
5930587a0fcSBarry Smith               if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) {
5949566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59598921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5960587a0fcSBarry Smith             }
597c48de900SBarry Smith           } else col = in[j];
5988d76821aSHong Zhang           nonew = b->nonew;
599d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6001eb62cbbSBarry Smith         }
6011eb62cbbSBarry Smith       }
6025ef9f2a5SBarry Smith     } else {
60328b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60490f02eecSBarry Smith       if (!aij->donotstash) {
6055080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
606d36fbae8SSatish Balay         if (roworiented) {
6078e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
608d36fbae8SSatish Balay         } else {
6098e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6104b0e389bSBarry Smith         }
6111eb62cbbSBarry Smith       }
6128a729477SBarry Smith     }
61390f02eecSBarry Smith   }
6145519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6178a729477SBarry Smith }
6188a729477SBarry Smith 
6192b08fdbeSandi selinger /*
620904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6212b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
622904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6232b08fdbeSandi selinger */
624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
625d71ae5a4SJacob Faibussowitsch {
626904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
627904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6284cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
629904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
630904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
631904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
632904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
633904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6346dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
635904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
636904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
637904d1e70Sandi selinger 
638904d1e70Sandi selinger   PetscFunctionBegin;
639904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
640904d1e70Sandi selinger   for (j = 0; j < am; j++) {
641904d1e70Sandi selinger     dnz = onz = 0;
642904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6436dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
644904d1e70Sandi selinger       /* If column is in the diagonal */
645904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
646904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
647904d1e70Sandi selinger         dnz++;
648904d1e70Sandi selinger       } else { /* off-diagonal entries */
649904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
650904d1e70Sandi selinger         onz++;
651904d1e70Sandi selinger       }
652904d1e70Sandi selinger     }
653904d1e70Sandi selinger     ailen[j] = dnz;
654904d1e70Sandi selinger     bilen[j] = onz;
655904d1e70Sandi selinger   }
6563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
657904d1e70Sandi selinger }
658904d1e70Sandi selinger 
659904d1e70Sandi selinger /*
660904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
661904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6621de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6631de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6641de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
665904d1e70Sandi selinger */
666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
667d71ae5a4SJacob Faibussowitsch {
6683a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6693a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6704cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
671e9ede7d0Sandi selinger   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6733a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6743a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6753a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6763a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6776dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6781de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
679904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
680904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6813a063d27Sandi selinger 
6823a063d27Sandi selinger   PetscFunctionBegin;
6833a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6843a063d27Sandi selinger   for (j = 0; j < am; j++) {
685904d1e70Sandi selinger     dnz_row = onz_row = 0;
686904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
687904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
688e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
689e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
690ae8e66a0Sandi selinger       /* If column is in the diagonal */
6913a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
692904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
693904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
694904d1e70Sandi selinger         dnz_row++;
695ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
696904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
697904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
698904d1e70Sandi selinger         onz_row++;
6993a063d27Sandi selinger       }
7003a063d27Sandi selinger     }
701904d1e70Sandi selinger     ailen[j] = dnz_row;
702904d1e70Sandi selinger     bilen[j] = onz_row;
7033a063d27Sandi selinger   }
7043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7053a063d27Sandi selinger }
7063a063d27Sandi selinger 
707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
708d71ae5a4SJacob Faibussowitsch {
709b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
710d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
711d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
712b49de8d1SLois Curfman McInnes 
7133a40ed3dSBarry Smith   PetscFunctionBegin;
714b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71554c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71654c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71785835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
718b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
719b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
72054c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72154c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
722b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
723b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7249566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
725fa852ad4SSatish Balay       } else {
72648a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
728eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
729fa46199cSSatish Balay         col--;
730b1fc9764SSatish Balay #else
731905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
732b1fc9764SSatish Balay #endif
733e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73448a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
735b49de8d1SLois Curfman McInnes       }
736b49de8d1SLois Curfman McInnes     }
737b49de8d1SLois Curfman McInnes   }
7383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
739b49de8d1SLois Curfman McInnes }
740bc5ccf88SSatish Balay 
741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
742d71ae5a4SJacob Faibussowitsch {
743bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
744b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
745bc5ccf88SSatish Balay 
746bc5ccf88SSatish Balay   PetscFunctionBegin;
7473ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
748bc5ccf88SSatish Balay 
7499566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7509566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7519566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
753bc5ccf88SSatish Balay }
754bc5ccf88SSatish Balay 
755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
756d71ae5a4SJacob Faibussowitsch {
757bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
758b1d57f15SBarry Smith   PetscMPIInt  n;
759b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
760e44c0bd4SBarry Smith   PetscInt    *row, *col;
761ace3abfcSBarry Smith   PetscBool    other_disassembled;
76287828ca2SBarry Smith   PetscScalar *val;
763bc5ccf88SSatish Balay 
76491c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7656e111a19SKarl Rupp 
766bc5ccf88SSatish Balay   PetscFunctionBegin;
7674cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
768a2d1c673SSatish Balay     while (1) {
7699566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
770a2d1c673SSatish Balay       if (!flg) break;
771a2d1c673SSatish Balay 
772bc5ccf88SSatish Balay       for (i = 0; i < n;) {
773bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7742205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7752205254eSKarl Rupp           if (row[j] != rstart) break;
7762205254eSKarl Rupp         }
777bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
778bc5ccf88SSatish Balay         else ncols = n - i;
779bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7809566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
781bc5ccf88SSatish Balay         i = j;
782bc5ccf88SSatish Balay       }
783bc5ccf88SSatish Balay     }
7849566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
785bc5ccf88SSatish Balay   }
7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
787c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7889ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7899ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7919566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7929ecce9b1SRichard Tran Mills   }
793e2cf4d64SStefano Zampini #endif
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
796bc5ccf88SSatish Balay 
797bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
798071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
799bc5ccf88SSatish Balay   /*
800bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
801bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
802bc5ccf88SSatish Balay   */
803bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8045f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80535cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8069566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
807ad59fb31SSatish Balay     }
808ad59fb31SSatish Balay   }
80948a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
812c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
813e2cf4d64SStefano Zampini #endif
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
816bc5ccf88SSatish Balay 
8179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8182205254eSKarl Rupp 
819f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
820a30b2313SHong Zhang 
8219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
822e56f5c9eSBarry Smith 
8234f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8244f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
825e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
827e56f5c9eSBarry Smith   }
8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
829c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
830e2cf4d64SStefano Zampini #endif
8313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
832bc5ccf88SSatish Balay }
833bc5ccf88SSatish Balay 
834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
835d71ae5a4SJacob Faibussowitsch {
83644a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8373a40ed3dSBarry Smith 
8383a40ed3dSBarry Smith   PetscFunctionBegin;
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8409566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8421eb62cbbSBarry Smith }
8431eb62cbbSBarry Smith 
844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
845d71ae5a4SJacob Faibussowitsch {
8461b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8471b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8486e520ac8SStefano Zampini   PetscInt    r, len;
849*9939a2d1SBarry Smith   PetscBool   cong;
8501eb62cbbSBarry Smith 
8513a40ed3dSBarry Smith   PetscFunctionBegin;
8526e520ac8SStefano Zampini   /* get locally owned rows */
8539566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8549566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
85597b48c8fSBarry Smith   /* fix right hand side if needed */
85697b48c8fSBarry Smith   if (x && b) {
8571b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8581b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8591b1dd7adSMatthew G. Knepley 
86028b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8619566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8629566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8631b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8659566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86697b48c8fSBarry Smith   }
867a92ad425SStefano Zampini 
868a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8699566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8709566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
871a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
872a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
873a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
874a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
875a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
876a92ad425SStefano Zampini 
877a92ad425SStefano Zampini     nnwA = aijA->nonew;
878a92ad425SStefano Zampini     nnwB = aijB->nonew;
879a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
880a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
881a92ad425SStefano Zampini     if (!nnzA) {
8829566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
883a92ad425SStefano Zampini       aijA->nonew = 0;
884a92ad425SStefano Zampini     }
885a92ad425SStefano Zampini     if (!nnzB) {
8869566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
887a92ad425SStefano Zampini       aijB->nonew = 0;
888a92ad425SStefano Zampini     }
889a92ad425SStefano Zampini     /* Must zero here before the next loop */
8909566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8919566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8921b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8931b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
894a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8959566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
896e2d53e46SBarry Smith     }
897a92ad425SStefano Zampini     aijA->nonew = nnwA;
898a92ad425SStefano Zampini     aijB->nonew = nnwB;
8996eb55b6aSBarry Smith   } else {
9009566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9019566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9026eb55b6aSBarry Smith   }
9039566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9064f9cfa9eSBarry Smith 
907*9939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
908*9939a2d1SBarry Smith   if (!((Mat_SeqAIJ *)(mat->A->data))->keepnonzeropattern || !((Mat_SeqAIJ *)(mat->A->data))->nonew) {
909*9939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
910*9939a2d1SBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
911*9939a2d1SBarry Smith   }
9123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9131eb62cbbSBarry Smith }
9141eb62cbbSBarry Smith 
915ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
916d71ae5a4SJacob Faibussowitsch {
9179c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9185ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
919131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
92054bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
921131c27b5Sprj-   PetscMPIInt        p = 0;
92254bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92354bd4135SMatthew G. Knepley   PetscSF            sf;
9249c7c4993SBarry Smith   const PetscScalar *xx;
925fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
926564f14d6SBarry Smith   Vec                xmask, lmask;
927564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
928564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
929564f14d6SBarry Smith   PetscScalar       *aa;
9309c7c4993SBarry Smith 
9319c7c4993SBarry Smith   PetscFunctionBegin;
93254bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93454bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93654bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93754bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
938aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9395ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9409566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9415ba17502SJed Brown     }
94254bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94354bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9449c7c4993SBarry Smith   }
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9469566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94754bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9509566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95154bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9529371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9539371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
954564f14d6SBarry Smith   /* zero diagonal part of matrix */
9559566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9564cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9579566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9589566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9599566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
96054bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9629566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9649566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
965a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
966a92ad425SStefano Zampini     PetscBool cong;
967a92ad425SStefano Zampini 
9689566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9709566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9719566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9729566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9739566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
974377aa5a1SBarry Smith   }
9759566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9764cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
978564f14d6SBarry Smith   ii = aij->i;
9798e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
980564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
981564f14d6SBarry Smith   if (aij->compressedrow.use) {
982564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
983564f14d6SBarry Smith     ii   = aij->compressedrow.i;
984564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
985564f14d6SBarry Smith     for (i = 0; i < m; i++) {
986564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
987564f14d6SBarry Smith       aj = aij->j + ii[i];
988fff043a9SJunchao Zhang       aa = aij_a + ii[i];
989564f14d6SBarry Smith 
990564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99125266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
992377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
993564f14d6SBarry Smith           *aa = 0.0;
994564f14d6SBarry Smith         }
995564f14d6SBarry Smith         aa++;
996564f14d6SBarry Smith         aj++;
997564f14d6SBarry Smith       }
998564f14d6SBarry Smith       ridx++;
999564f14d6SBarry Smith     }
1000564f14d6SBarry Smith   } else { /* do not use compressed row format */
1001564f14d6SBarry Smith     m = l->B->rmap->n;
1002564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1003564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1004564f14d6SBarry Smith       aj = aij->j + ii[i];
1005fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1006564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100725266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1008377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1009564f14d6SBarry Smith           *aa = 0.0;
1010564f14d6SBarry Smith         }
1011564f14d6SBarry Smith         aa++;
1012564f14d6SBarry Smith         aj++;
1013564f14d6SBarry Smith       }
1014564f14d6SBarry Smith     }
1015564f14d6SBarry Smith   }
1016a92ad425SStefano Zampini   if (x && b) {
10179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10189566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1019377aa5a1SBarry Smith   }
10209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10219566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10239566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10244f9cfa9eSBarry Smith 
10254f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1026*9939a2d1SBarry Smith   if (!((Mat_SeqAIJ *)(l->A->data))->nonew) {
10274f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10281c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10294f9cfa9eSBarry Smith   }
10303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10319c7c4993SBarry Smith }
10329c7c4993SBarry Smith 
1033ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1034d71ae5a4SJacob Faibussowitsch {
1035416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1036b1d57f15SBarry Smith   PetscInt    nt;
103719b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1038416022c9SBarry Smith 
10393a40ed3dSBarry Smith   PetscFunctionBegin;
10409566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104108401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10429566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1043296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10449566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1045296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10471eb62cbbSBarry Smith }
10481eb62cbbSBarry Smith 
1049ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1050d71ae5a4SJacob Faibussowitsch {
1051bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1052bd0c2dcbSBarry Smith 
1053bd0c2dcbSBarry Smith   PetscFunctionBegin;
10549566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1056bd0c2dcbSBarry Smith }
1057bd0c2dcbSBarry Smith 
1058ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1059d71ae5a4SJacob Faibussowitsch {
1060416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106101ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10623a40ed3dSBarry Smith 
10633a40ed3dSBarry Smith   PetscFunctionBegin;
10649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10659566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10669566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10679566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1069da3a660dSBarry Smith }
1070da3a660dSBarry Smith 
1071ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1072d71ae5a4SJacob Faibussowitsch {
1073416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1074da3a660dSBarry Smith 
10753a40ed3dSBarry Smith   PetscFunctionBegin;
1076da3a660dSBarry Smith   /* do nondiagonal part */
10779566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1078da3a660dSBarry Smith   /* do local part */
10799566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10809613dc34SJunchao Zhang   /* add partial results together */
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1084da3a660dSBarry Smith }
1085da3a660dSBarry Smith 
1086ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1087d71ae5a4SJacob Faibussowitsch {
10884f423910Svictorle   MPI_Comm    comm;
1089ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1090ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1091cd0d46ebSvictorle   IS          Me, Notme;
1092b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109354d735aeSStefano Zampini   PetscBool   lf;
1094b1d57f15SBarry Smith   PetscMPIInt size;
1095cd0d46ebSvictorle 
1096cd0d46ebSvictorle   PetscFunctionBegin;
109742e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10989566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
10991c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11003ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11019566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11033ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110442e5f5b4Svictorle 
11057dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11069566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11079566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1109cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1110cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11119566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11129566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11139566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111466501d38Svictorle   Aoff = Aoffs[0];
11159566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111666501d38Svictorle   Boff = Boffs[0];
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11189566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11199566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11219566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11229566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1124cd0d46ebSvictorle }
1125cd0d46ebSvictorle 
1126ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f)
1127d71ae5a4SJacob Faibussowitsch {
1128a3bbdb47SHong Zhang   PetscFunctionBegin;
11299566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f));
11303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1131a3bbdb47SHong Zhang }
1132a3bbdb47SHong Zhang 
1133ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1134d71ae5a4SJacob Faibussowitsch {
1135416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1136da3a660dSBarry Smith 
11373a40ed3dSBarry Smith   PetscFunctionBegin;
1138da3a660dSBarry Smith   /* do nondiagonal part */
11399566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1140da3a660dSBarry Smith   /* do local part */
11419566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11429613dc34SJunchao Zhang   /* add partial results together */
11439566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11449566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1146da3a660dSBarry Smith }
1147da3a660dSBarry Smith 
11481eb62cbbSBarry Smith /*
11491eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11501eb62cbbSBarry Smith    diagonal block
11511eb62cbbSBarry Smith */
1152ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1153d71ae5a4SJacob Faibussowitsch {
1154416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11553a40ed3dSBarry Smith 
11563a40ed3dSBarry Smith   PetscFunctionBegin;
115708401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1158aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11599566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11611eb62cbbSBarry Smith }
11621eb62cbbSBarry Smith 
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1164d71ae5a4SJacob Faibussowitsch {
1165052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11663a40ed3dSBarry Smith 
11673a40ed3dSBarry Smith   PetscFunctionBegin;
11689566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11699566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1171052efed2SBarry Smith }
1172052efed2SBarry Smith 
1173ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1174d71ae5a4SJacob Faibussowitsch {
11758e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11768e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11778e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11783ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11792e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
118017a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
118117a3732bSBarry Smith   PetscInt64         nz, hnz;
11823ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11833ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11843ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
118517a3732bSBarry Smith   PetscMPIInt        rank;
11868e2fed03SBarry Smith 
11878e2fed03SBarry Smith   PetscFunctionBegin;
11889566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11893ea6fe3dSLisandro Dalcin 
11903ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11913ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11923ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11933ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11943ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11958e2fed03SBarry Smith   nz = A->nz + B->nz;
11963ea6fe3dSLisandro Dalcin 
11973ea6fe3dSLisandro Dalcin   /* write matrix header */
11980700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11999371c9d4SSatish Balay   header[1] = M;
12009371c9d4SSatish Balay   header[2] = N;
120117a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
120217a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
120338b83642SBarry Smith   if (rank == 0) {
120438b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
120538b83642SBarry Smith     else header[3] = (PetscInt)hnz;
120638b83642SBarry Smith   }
12079566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12088e2fed03SBarry Smith 
12093ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12113ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12129566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12139566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12148e2fed03SBarry Smith 
12153ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12173ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12183ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12193ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12203ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12218e2fed03SBarry Smith     }
12229371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12239371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12248e2fed03SBarry Smith   }
122517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12269566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12279566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12288e2fed03SBarry Smith 
12293ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12333ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12343ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12353ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12362e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12378e2fed03SBarry Smith     }
12389371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12399371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12408e2fed03SBarry Smith   }
12419566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
124317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12449566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12459566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12468e2fed03SBarry Smith 
12473ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12489566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12508e2fed03SBarry Smith }
12518e2fed03SBarry Smith 
12529804daf3SBarry Smith #include <petscdraw.h>
1253ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1254d71ae5a4SJacob Faibussowitsch {
125544a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
125632dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1257ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1258b0a32e0cSBarry Smith   PetscViewer       sviewer;
1259f3ef73ceSBarry Smith   PetscViewerFormat format;
1260416022c9SBarry Smith 
12613a40ed3dSBarry Smith   PetscFunctionBegin;
12629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12649566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
126532077d6dSBarry Smith   if (iascii) {
12669566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1267ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1268ef5fdb51SBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz;
12699566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12709566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1271ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1272ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1273ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1274ef5fdb51SBarry Smith         navg += nz[i];
1275ef5fdb51SBarry Smith       }
12769566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1277ef5fdb51SBarry Smith       navg = navg / size;
12789566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12793ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1280ef5fdb51SBarry Smith     }
12819566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1282456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12834e220ebcSLois Curfman McInnes       MatInfo   info;
12846335e310SSatish Balay       PetscInt *inodes = NULL;
1285923f20ffSKris Buschelman 
12869566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12889566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12899566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1290923f20ffSKris Buschelman       if (!inodes) {
12919371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12929371c9d4SSatish Balay                                                      (double)info.memory));
12936831982aSBarry Smith       } else {
12949371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12959371c9d4SSatish Balay                                                      (double)info.memory));
12966831982aSBarry Smith       }
12979566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12999566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13009566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13019566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13029566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13039566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13049566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13053ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1306fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1307923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13089566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1309923f20ffSKris Buschelman       if (inodes) {
13109566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1311d38fa0fbSBarry Smith       } else {
13129566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1313d38fa0fbSBarry Smith       }
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13154aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13163ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
131708480c60SBarry Smith     }
13188e2fed03SBarry Smith   } else if (isbinary) {
13198e2fed03SBarry Smith     if (size == 1) {
13209566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13219566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13228e2fed03SBarry Smith     } else {
13239566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13248e2fed03SBarry Smith     }
13253ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
132671e56450SStefano Zampini   } else if (iascii && size == 1) {
13279566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13289566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13300f5bd95cSBarry Smith   } else if (isdraw) {
1331b0a32e0cSBarry Smith     PetscDraw draw;
1332ace3abfcSBarry Smith     PetscBool isnull;
13339566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13349566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13353ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
133619bcc07fSBarry Smith   }
133719bcc07fSBarry Smith 
133871e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
133971e56450SStefano Zampini     Mat A = NULL, Av;
134071e56450SStefano Zampini     IS  isrow, iscol;
13412ee70a88SLois Curfman McInnes 
13429566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13449566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13459566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
134671e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
134771e56450SStefano Zampini     /*
134871e56450SStefano Zampini     Mat *AA, A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow,iscol;
135071e56450SStefano Zampini 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1354dd400576SPatrick Sanan     if (rank == 0) {
13559566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
135671e56450SStefano Zampini        A    = AA[0];
135771e56450SStefano Zampini        Av   = AA[0];
135895373324SBarry Smith     }
13599566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136071e56450SStefano Zampini */
13619566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
136355843e3eSBarry Smith     /*
136455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1365b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
136655843e3eSBarry Smith     */
13679566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1368dd400576SPatrick Sanan     if (rank == 0) {
136948a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13709566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137195373324SBarry Smith     }
13729566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13739566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
137495373324SBarry Smith   }
13753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13761eb62cbbSBarry Smith }
13771eb62cbbSBarry Smith 
1378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1379d71ae5a4SJacob Faibussowitsch {
1380ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1381416022c9SBarry Smith 
13823a40ed3dSBarry Smith   PetscFunctionBegin;
13839566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13849566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13859566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13869566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
138748a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1389416022c9SBarry Smith }
1390416022c9SBarry Smith 
1391ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1392d71ae5a4SJacob Faibussowitsch {
139344a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1394f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1395ace3abfcSBarry Smith   PetscBool   hasop;
13968a729477SBarry Smith 
13973a40ed3dSBarry Smith   PetscFunctionBegin;
1398a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13999566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14003ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1401a2b30743SBarry Smith   }
1402a2b30743SBarry Smith 
140348a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14044e980039SJed Brown 
1405c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1406da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14079566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14082798e883SHong Zhang       its--;
1409da3a660dSBarry Smith     }
14102798e883SHong Zhang 
14112798e883SHong Zhang     while (its--) {
14129566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14139566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14142798e883SHong Zhang 
1415c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14169566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14179566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14182798e883SHong Zhang 
1419c14dc6b6SHong Zhang       /* local sweep */
14209566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14212798e883SHong Zhang     }
14223a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1423da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14249566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14252798e883SHong Zhang       its--;
1426da3a660dSBarry Smith     }
14272798e883SHong Zhang     while (its--) {
14289566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14299566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14302798e883SHong Zhang 
1431c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14329566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14339566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1434c14dc6b6SHong Zhang 
1435c14dc6b6SHong Zhang       /* local sweep */
14369566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14372798e883SHong Zhang     }
14383a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1439da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14409566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14412798e883SHong Zhang       its--;
1442da3a660dSBarry Smith     }
14432798e883SHong Zhang     while (its--) {
14449566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14459566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14462798e883SHong Zhang 
1447c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14489566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14499566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14502798e883SHong Zhang 
1451c14dc6b6SHong Zhang       /* local sweep */
14529566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14532798e883SHong Zhang     }
1454a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1455a7420bb7SBarry Smith     Vec xx1;
1456a7420bb7SBarry Smith 
14579566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14589566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1459a7420bb7SBarry Smith 
14609566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14619566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1462a7420bb7SBarry Smith     if (!mat->diag) {
14639566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14649566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1465a7420bb7SBarry Smith     }
14669566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1467bd0c2dcbSBarry Smith     if (hasop) {
14689566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1469bd0c2dcbSBarry Smith     } else {
14709566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1471bd0c2dcbSBarry Smith     }
14729566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1473887ee2caSBarry Smith 
14749566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1475a7420bb7SBarry Smith 
1476a7420bb7SBarry Smith     /* local sweep */
14779566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14789566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14799566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1480ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1481c14dc6b6SHong Zhang 
14829566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1483a0808db4SHong Zhang 
14847b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14868a729477SBarry Smith }
1487a66be287SLois Curfman McInnes 
1488ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1489d71ae5a4SJacob Faibussowitsch {
149072e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149172e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
149272e6a0cfSJed Brown   PetscScalar    *aa, *ba;
149372e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
149472e6a0cfSJed Brown   PetscSF         rowsf, sf;
14950298fd71SBarry Smith   IS              parcolp = NULL;
149672e6a0cfSJed Brown   PetscBool       done;
149742e855d1Svictor 
149842e855d1Svictor   PetscFunctionBegin;
14999566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15009566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15019566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
150372e6a0cfSJed Brown 
150472e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
150872e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151172e6a0cfSJed Brown 
151272e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
151672e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152072e6a0cfSJed Brown 
15219566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15229566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15239566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
152472e6a0cfSJed Brown 
152572e6a0cfSJed Brown   /* Find out where my gcols should go */
15269566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15309566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15319566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15329566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15339566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
153472e6a0cfSJed Brown 
15359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15369566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15379566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
153872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1539131c27b5Sprj-     PetscInt    row = rdest[i];
1540131c27b5Sprj-     PetscMPIInt rowner;
15419566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
154272e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1543131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1544131c27b5Sprj-       PetscMPIInt cowner;
15459566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
154672e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154772e6a0cfSJed Brown       else onnz[i]++;
154872e6a0cfSJed Brown     }
154972e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1550131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1551131c27b5Sprj-       PetscMPIInt cowner;
15529566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
155372e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155472e6a0cfSJed Brown       else onnz[i]++;
155572e6a0cfSJed Brown     }
155672e6a0cfSJed Brown   }
15579566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15589566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15599566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15609566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15619566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
156272e6a0cfSJed Brown 
15639566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
156672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
156772e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1568970468b0SJed Brown     PetscInt  j0, rowlen;
156972e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1570970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1571970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15729566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1573970468b0SJed Brown     }
157472e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1575970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1576970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15779566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1578970468b0SJed Brown     }
157972e6a0cfSJed Brown   }
15809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15829566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15839566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15869566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15879566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15889566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15899566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159072e6a0cfSJed Brown   *B = Aperm;
15913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
159242e855d1Svictor }
159342e855d1Svictor 
1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1595d71ae5a4SJacob Faibussowitsch {
1596c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1597c5e4d11fSDmitry Karpeev 
1598c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15999566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1600c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1602c5e4d11fSDmitry Karpeev }
1603c5e4d11fSDmitry Karpeev 
1604ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1605d71ae5a4SJacob Faibussowitsch {
1606a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1607a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16083966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1609a66be287SLois Curfman McInnes 
16103a40ed3dSBarry Smith   PetscFunctionBegin;
16114e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16132205254eSKarl Rupp 
16149371c9d4SSatish Balay   isend[0] = info->nz_used;
16159371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16169371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16179371c9d4SSatish Balay   isend[3] = info->memory;
16189371c9d4SSatish Balay   isend[4] = info->mallocs;
16192205254eSKarl Rupp 
16209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16212205254eSKarl Rupp 
16229371c9d4SSatish Balay   isend[0] += info->nz_used;
16239371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16249371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16259371c9d4SSatish Balay   isend[3] += info->memory;
16269371c9d4SSatish Balay   isend[4] += info->mallocs;
1627a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16284e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16294e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16304e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16314e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16324e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1633a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16341c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16352205254eSKarl Rupp 
16364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1641a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16421c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16432205254eSKarl Rupp 
16444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1649a66be287SLois Curfman McInnes   }
16504e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16514e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16524e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1654a66be287SLois Curfman McInnes }
1655a66be287SLois Curfman McInnes 
1656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1657d71ae5a4SJacob Faibussowitsch {
1658c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1659c74985f6SBarry Smith 
16603a40ed3dSBarry Smith   PetscFunctionBegin;
166112c028f9SKris Buschelman   switch (op) {
1662512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
166312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
166428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1665a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
166612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16670ad02fcaSStefano Zampini   case MAT_USE_INODES:
166812c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16691a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1670fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16729566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167312c028f9SKris Buschelman     break;
167412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
167543674050SBarry Smith     MatCheckPreallocated(A, 1);
16764e0d8c25SBarry Smith     a->roworiented = flg;
16772205254eSKarl Rupp 
16789566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168012c028f9SKris Buschelman     break;
16818c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1682d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1683d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1684d71ae5a4SJacob Faibussowitsch     break;
1685d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1686d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1687d71ae5a4SJacob Faibussowitsch     break;
1688c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1689ffa07934SHong Zhang   case MAT_SPD:
169077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1692bf108f30SBarry Smith   case MAT_HERMITIAN:
1693bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1694b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1695b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1696b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
169777e54ba9SKris Buschelman     break;
1698d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1699d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1700d71ae5a4SJacob Faibussowitsch     break;
1701957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1702957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1703957cac9fSHong Zhang     break;
1704d71ae5a4SJacob Faibussowitsch   default:
1705d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
17063a40ed3dSBarry Smith   }
17073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1708c74985f6SBarry Smith }
1709c74985f6SBarry Smith 
1710d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1711d71ae5a4SJacob Faibussowitsch {
1712154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171387828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1714d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1715d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1716b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
171739e00950SLois Curfman McInnes 
17183a40ed3dSBarry Smith   PetscFunctionBegin;
171928b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17207a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17217a0afa10SBarry Smith 
172270f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17237a0afa10SBarry Smith     /*
17247a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17257a0afa10SBarry Smith     */
17267a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1727b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1728d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17297a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17302205254eSKarl Rupp       if (max < tmp) max = tmp;
17317a0afa10SBarry Smith     }
17329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17337a0afa10SBarry Smith   }
17347a0afa10SBarry Smith 
1735aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1736abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
173739e00950SLois Curfman McInnes 
17389371c9d4SSatish Balay   pvA = &vworkA;
17399371c9d4SSatish Balay   pcA = &cworkA;
17409371c9d4SSatish Balay   pvB = &vworkB;
17419371c9d4SSatish Balay   pcB = &cworkB;
17429371c9d4SSatish Balay   if (!v) {
17439371c9d4SSatish Balay     pvA = NULL;
17449371c9d4SSatish Balay     pvB = NULL;
17459371c9d4SSatish Balay   }
17469371c9d4SSatish Balay   if (!idx) {
17479371c9d4SSatish Balay     pcA = NULL;
17489371c9d4SSatish Balay     if (!v) pcB = NULL;
17499371c9d4SSatish Balay   }
17509566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17519566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1752154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1753154123eaSLois Curfman McInnes 
175470f0671dSBarry Smith   cmap = mat->garray;
1755154123eaSLois Curfman McInnes   if (v || idx) {
1756154123eaSLois Curfman McInnes     if (nztot) {
1757154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1758b1d57f15SBarry Smith       PetscInt imark = -1;
1759154123eaSLois Curfman McInnes       if (v) {
176070f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176139e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176270f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1763154123eaSLois Curfman McInnes           else break;
1764154123eaSLois Curfman McInnes         }
1765154123eaSLois Curfman McInnes         imark = i;
176670f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
176770f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1768154123eaSLois Curfman McInnes       }
1769154123eaSLois Curfman McInnes       if (idx) {
177070f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177170f0671dSBarry Smith         if (imark > -1) {
1772ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177370f0671dSBarry Smith         } else {
1774154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177570f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1776154123eaSLois Curfman McInnes             else break;
1777154123eaSLois Curfman McInnes           }
1778154123eaSLois Curfman McInnes           imark = i;
177970f0671dSBarry Smith         }
178070f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178170f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178239e00950SLois Curfman McInnes       }
17833f97c4b0SBarry Smith     } else {
1784f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1785f4259b30SLisandro Dalcin       if (v) *v = NULL;
17861ca473b0SSatish Balay     }
1787154123eaSLois Curfman McInnes   }
178839e00950SLois Curfman McInnes   *nz = nztot;
17899566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17909566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179239e00950SLois Curfman McInnes }
179339e00950SLois Curfman McInnes 
1794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1795d71ae5a4SJacob Faibussowitsch {
17967a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17973a40ed3dSBarry Smith 
17983a40ed3dSBarry Smith   PetscFunctionBegin;
179928b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18007a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180239e00950SLois Curfman McInnes }
180339e00950SLois Curfman McInnes 
1804ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1805d71ae5a4SJacob Faibussowitsch {
1806855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1807ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1808d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1809329f5518SBarry Smith   PetscReal        sum = 0.0;
1810fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181104ca555eSLois Curfman McInnes 
18123a40ed3dSBarry Smith   PetscFunctionBegin;
181317699dbbSLois Curfman McInnes   if (aij->size == 1) {
18149566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181537fa93a5SLois Curfman McInnes   } else {
18169566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
181804ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1819fff043a9SJunchao Zhang       v = amata;
182004ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18219371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18229371c9d4SSatish Balay         v++;
182304ca555eSLois Curfman McInnes       }
1824fff043a9SJunchao Zhang       v = bmata;
182504ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18269371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18279371c9d4SSatish Balay         v++;
182804ca555eSLois Curfman McInnes       }
18291c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18308f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18319566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18323a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1833329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1834b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18359566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
183704ca555eSLois Curfman McInnes       *norm = 0.0;
18389371c9d4SSatish Balay       v     = amata;
18399371c9d4SSatish Balay       jj    = amat->j;
184004ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18419371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18429371c9d4SSatish Balay         v++;
184304ca555eSLois Curfman McInnes       }
18449371c9d4SSatish Balay       v  = bmata;
18459371c9d4SSatish Balay       jj = bmat->j;
184604ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18479371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18489371c9d4SSatish Balay         v++;
184904ca555eSLois Curfman McInnes       }
18501c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1851d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
185204ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
185304ca555eSLois Curfman McInnes       }
18549566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18569566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18573a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1858329f5518SBarry Smith       PetscReal ntemp = 0.0;
1859d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18608e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186104ca555eSLois Curfman McInnes         sum = 0.0;
186204ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18639371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18649371c9d4SSatish Balay           v++;
186504ca555eSLois Curfman McInnes         }
18668e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186704ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18689371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18699371c9d4SSatish Balay           v++;
187004ca555eSLois Curfman McInnes         }
1871515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187204ca555eSLois Curfman McInnes       }
18731c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18749566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1875ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187837fa93a5SLois Curfman McInnes   }
18793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1880855ac2c5SLois Curfman McInnes }
1881855ac2c5SLois Curfman McInnes 
1882ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1883d71ae5a4SJacob Faibussowitsch {
1884a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1885a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1886071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1887071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1888a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1889ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1890b7c46309SBarry Smith 
18913a40ed3dSBarry Smith   PetscFunctionBegin;
18927fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18939371c9d4SSatish Balay   ma = A->rmap->n;
18949371c9d4SSatish Balay   na = A->cmap->n;
18959371c9d4SSatish Balay   mb = a->B->rmap->n;
18969371c9d4SSatish Balay   nb = a->B->cmap->n;
18979371c9d4SSatish Balay   ai = Aloc->i;
18989371c9d4SSatish Balay   aj = Aloc->j;
18999371c9d4SSatish Balay   bi = Bloc->i;
19009371c9d4SSatish Balay   bj = Bloc->j;
1901fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190280bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190380bcc5a1SJed Brown     PetscSFNode         *oloc;
1904713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190580bcc5a1SJed Brown 
19069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190780bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1909cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191080bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191280bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191380bcc5a1SJed Brown     /* map those to global */
19149566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19179566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191857168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19209566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1921d4bb536fSBarry Smith 
19229566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19239566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19269566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19279566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1928fc4dec0aSBarry Smith   } else {
1929fc4dec0aSBarry Smith     B = *matout;
19309566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1931fc4dec0aSBarry Smith   }
1932b7c46309SBarry Smith 
1933f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1934a8661f62Sandi selinger   A_diag      = a->A;
1935a8661f62Sandi selinger   B_diag      = &b->A;
1936a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1937a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1938a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1939a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1940f79cb1a0Sandi selinger 
1941f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1942ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1943f79cb1a0Sandi selinger 
19444cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1945a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19467fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19479566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1948f79cb1a0Sandi selinger 
1949b7c46309SBarry Smith   /* copy over the B part */
19509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1952ce496241SStefano Zampini   pbv = bv;
1953d0f46423SBarry Smith   row = A->rmap->rstart;
19542205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195561a2fbbaSHong Zhang   cols_tmp = cols;
1956da668accSHong Zhang   for (i = 0; i < mb; i++) {
1957da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19589566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19592205254eSKarl Rupp     row++;
1960720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1961720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1962b7c46309SBarry Smith   }
19639566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1965fc73b1b3SBarry Smith 
19669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1968cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19690de55854SLois Curfman McInnes     *matout = B;
19700de55854SLois Curfman McInnes   } else {
19719566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19720de55854SLois Curfman McInnes   }
19733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1974b7c46309SBarry Smith }
1975b7c46309SBarry Smith 
1976ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1977d71ae5a4SJacob Faibussowitsch {
19784b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19794b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1980b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1981a008b906SSatish Balay 
19823a40ed3dSBarry Smith   PetscFunctionBegin;
19839566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19844b967eb1SSatish Balay   if (rr) {
19859566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198608401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19874b967eb1SSatish Balay     /* Overlap communication with computation. */
19889566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1989a008b906SSatish Balay   }
19904b967eb1SSatish Balay   if (ll) {
19919566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199208401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1993dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19944b967eb1SSatish Balay   }
19954b967eb1SSatish Balay   /* scale  the diagonal block */
1996dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19974b967eb1SSatish Balay 
19984b967eb1SSatish Balay   if (rr) {
19994b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20009566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2001dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20024b967eb1SSatish Balay   }
20033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2004a008b906SSatish Balay }
2005a008b906SSatish Balay 
2006ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2007d71ae5a4SJacob Faibussowitsch {
2008bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20093a40ed3dSBarry Smith 
20103a40ed3dSBarry Smith   PetscFunctionBegin;
20119566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2013bb5a7306SBarry Smith }
2014bb5a7306SBarry Smith 
2015ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2016d71ae5a4SJacob Faibussowitsch {
2017d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2018d4bb536fSBarry Smith   Mat         a, b, c, d;
2019ace3abfcSBarry Smith   PetscBool   flg;
2020d4bb536fSBarry Smith 
20213a40ed3dSBarry Smith   PetscFunctionBegin;
20229371c9d4SSatish Balay   a = matA->A;
20239371c9d4SSatish Balay   b = matA->B;
20249371c9d4SSatish Balay   c = matB->A;
20259371c9d4SSatish Balay   d = matB->B;
2026d4bb536fSBarry Smith 
20279566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20291c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2031d4bb536fSBarry Smith }
2032d4bb536fSBarry Smith 
2033ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2034d71ae5a4SJacob Faibussowitsch {
2035cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2036cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2037cb5b572fSBarry Smith 
2038cb5b572fSBarry Smith   PetscFunctionBegin;
203933f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204033f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2041cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2042cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2043cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2044cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2045cb5b572fSBarry Smith        then copying the submatrices */
20469566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2047cb5b572fSBarry Smith   } else {
20489566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2050cb5b572fSBarry Smith   }
20519566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2053cb5b572fSBarry Smith }
2054cb5b572fSBarry Smith 
2055001ddc4fSHong Zhang /*
2056001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2057001ddc4fSHong Zhang    have different nonzero structure.
2058001ddc4fSHong Zhang */
2059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2060d71ae5a4SJacob Faibussowitsch {
2061001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206295b7e79eSJed Brown 
206395b7e79eSJed Brown   PetscFunctionBegin;
206495b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206595b7e79eSJed Brown   for (i = 0; i < m; i++) {
20668e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2067001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2068001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206995b7e79eSJed Brown     nnz[i] = 0;
207095b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2071001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2072001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207395b7e79eSJed Brown       nnz[i]++;
207495b7e79eSJed Brown     }
207595b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207695b7e79eSJed Brown   }
20773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207895b7e79eSJed Brown }
207995b7e79eSJed Brown 
2080001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2082d71ae5a4SJacob Faibussowitsch {
2083001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2084001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2086001ddc4fSHong Zhang 
2087001ddc4fSHong Zhang   PetscFunctionBegin;
20889566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2090001ddc4fSHong Zhang }
2091001ddc4fSHong Zhang 
2092ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2093d71ae5a4SJacob Faibussowitsch {
2094ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2095ac90fabeSBarry Smith 
2096ac90fabeSBarry Smith   PetscFunctionBegin;
2097ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20989566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2100ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21019566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2102ac90fabeSBarry Smith   } else {
21039f5f6813SShri Abhyankar     Mat       B;
21049f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2105d9d719b4SStefano Zampini 
21069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21089566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21099566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21109566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21129566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21149566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21169566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21179566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2119ac90fabeSBarry Smith   }
21203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2121ac90fabeSBarry Smith }
2122ac90fabeSBarry Smith 
21232726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2124354c94deSBarry Smith 
2125ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2126d71ae5a4SJacob Faibussowitsch {
21275f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21285f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2129354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2130354c94deSBarry Smith 
21319566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21335f80ce2aSJacob Faibussowitsch   }
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2135354c94deSBarry Smith }
2136354c94deSBarry Smith 
2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2138d71ae5a4SJacob Faibussowitsch {
213999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214099cafbc1SBarry Smith 
214199cafbc1SBarry Smith   PetscFunctionBegin;
21429566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214599cafbc1SBarry Smith }
214699cafbc1SBarry Smith 
2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2148d71ae5a4SJacob Faibussowitsch {
214999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215099cafbc1SBarry Smith 
215199cafbc1SBarry Smith   PetscFunctionBegin;
21529566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215599cafbc1SBarry Smith }
215699cafbc1SBarry Smith 
2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2158d71ae5a4SJacob Faibussowitsch {
2159c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2160475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2161475b8b61SHong Zhang   PetscScalar       *va, *vv;
2162475b8b61SHong Zhang   Vec                vB, vA;
2163475b8b61SHong Zhang   const PetscScalar *vb;
2164c91732d9SHong Zhang 
2165c91732d9SHong Zhang   PetscFunctionBegin;
21669566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
21679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2168475b8b61SHong Zhang 
21699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2170c91732d9SHong Zhang   if (idx) {
2171475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2172d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2173c91732d9SHong Zhang     }
2174c91732d9SHong Zhang   }
2175c91732d9SHong Zhang 
21769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
21779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2179c91732d9SHong Zhang 
21809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2182475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2183c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2184475b8b61SHong Zhang       vv[i] = vb[i];
2185c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2186475b8b61SHong Zhang     } else {
2187475b8b61SHong Zhang       vv[i] = va[i];
21889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2189c91732d9SHong Zhang     }
2190c91732d9SHong Zhang   }
21919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2198c91732d9SHong Zhang }
2199c91732d9SHong Zhang 
2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2201eede4a3fSMark Adams {
2202eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2203eede4a3fSMark Adams   PetscInt    m = A->rmap->n;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2789f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
2793d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2794c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27993acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2800b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28075bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
2808a3bbdb47SHong Zhang                                        MatIsSymmetric_MPIAIJ,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
281526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28234222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28262fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
28355494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
28373b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2838d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
2840c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
2842f4259b30SLisandro Dalcin                                        NULL,
2843b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2848f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2849a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2850bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2851a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28527dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
2856187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
28669c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2867a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28684222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2869f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2870f4259b30SLisandro Dalcin                                        NULL,
287172833a62Smarkadams4                                        NULL,
287272833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28732d776b49SBarry Smith                                        NULL,
2874dec0b466SHong Zhang                                        /*150*/ NULL,
2875eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2876eede4a3fSMark Adams                                        MatGetRowSumAbs_MPIAIJ};
287736ce4990SBarry Smith 
2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2879d71ae5a4SJacob Faibussowitsch {
28802e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28812e8a6d31SBarry Smith 
28822e8a6d31SBarry Smith   PetscFunctionBegin;
28839566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28849566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28862e8a6d31SBarry Smith }
28872e8a6d31SBarry Smith 
2888ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2889d71ae5a4SJacob Faibussowitsch {
28902e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28912e8a6d31SBarry Smith 
28922e8a6d31SBarry Smith   PetscFunctionBegin;
28939566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28949566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28962e8a6d31SBarry Smith }
28978a729477SBarry Smith 
2898d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2899d71ae5a4SJacob Faibussowitsch {
2900ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29015d2a9ed1SStefano Zampini   PetscMPIInt size;
2902a23d5eceSKris Buschelman 
2903a23d5eceSKris Buschelman   PetscFunctionBegin;
2904ad79cf63SBarry Smith   if (B->hash_active) {
2905aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2906ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2907ad79cf63SBarry Smith   }
29089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2910899cda47SBarry Smith 
2911cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2912eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2913cb7b82ddSBarry Smith #else
29149566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2915cb7b82ddSBarry Smith #endif
29169566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29189566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2919cb7b82ddSBarry Smith 
29209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
29219566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29249566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2926cb7b82ddSBarry Smith 
2927ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2932899cda47SBarry Smith 
29339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2935526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2936cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293715001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2939a23d5eceSKris Buschelman }
2940a23d5eceSKris Buschelman 
2941ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2942d71ae5a4SJacob Faibussowitsch {
2943ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2944846b4da1SFande Kong 
2945846b4da1SFande Kong   PetscFunctionBegin;
2946846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2949846b4da1SFande Kong 
2950846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2951eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2952846b4da1SFande Kong #else
29539566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2954846b4da1SFande Kong #endif
29559566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29579566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2958846b4da1SFande Kong 
29599566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29609566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2961846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2962846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2963846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2965846b4da1SFande Kong }
2966846b4da1SFande Kong 
2967d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2968d71ae5a4SJacob Faibussowitsch {
2969d6dfbf8fSBarry Smith   Mat         mat;
2970416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2971d6dfbf8fSBarry Smith 
29723a40ed3dSBarry Smith   PetscFunctionBegin;
2973f4259b30SLisandro Dalcin   *newmat = NULL;
29749566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29759566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29769566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29779566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2978273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2979e1b6402fSHong Zhang 
2980d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2981501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2982e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2983d6dfbf8fSBarry Smith 
298417699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298517699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2986e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2987e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2988501880eeSStefano Zampini   a->rowindices   = NULL;
2989501880eeSStefano Zampini   a->rowvalues    = NULL;
2990bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2991d6dfbf8fSBarry Smith 
29929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2994420957c1SBarry Smith   if (matin->hash_active) {
2995420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2996420957c1SBarry Smith   } else {
2997420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29982ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2999aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3000eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3001b1fc9764SSatish Balay #else
30029566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30039566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3004b1fc9764SSatish Balay #endif
3005501880eeSStefano Zampini     } else a->colmap = NULL;
30063f41c07dSBarry Smith     if (oldmat->garray) {
3007b1d57f15SBarry Smith       PetscInt len;
3008d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30109566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3011501880eeSStefano Zampini     } else a->garray = NULL;
3012d6dfbf8fSBarry Smith 
30130de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30140de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30150de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3016aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3017aa624791SPierre Jolivet     if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
30189566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30199566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3020420957c1SBarry Smith   }
30219566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30228a729477SBarry Smith   *newmat = mat;
30233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30248a729477SBarry Smith }
3025416022c9SBarry Smith 
3026d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3027d71ae5a4SJacob Faibussowitsch {
302852f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
302952f91c60SVaclav Hapla 
303052f91c60SVaclav Hapla   PetscFunctionBegin;
303152f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303252f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3033c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30349566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30359566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30369566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
303752f91c60SVaclav Hapla   if (isbinary) {
30389566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
303952f91c60SVaclav Hapla   } else if (ishdf5) {
304052f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30419566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304252f91c60SVaclav Hapla #else
304352f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304452f91c60SVaclav Hapla #endif
304552f91c60SVaclav Hapla   } else {
304698921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
304752f91c60SVaclav Hapla   }
30483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
304952f91c60SVaclav Hapla }
305052f91c60SVaclav Hapla 
3051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3052d71ae5a4SJacob Faibussowitsch {
30533ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30543ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30553ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30568fb81238SShri Abhyankar 
30578fb81238SShri Abhyankar   PetscFunctionBegin;
30589566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30598fb81238SShri Abhyankar 
30603ea6fe3dSLisandro Dalcin   /* read in matrix header */
30619566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306208401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30639371c9d4SSatish Balay   M  = header[1];
30649371c9d4SSatish Balay   N  = header[2];
30659371c9d4SSatish Balay   nz = header[3];
306608401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
306708401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
306808401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
306908ea439dSMark F. Adams 
30703ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30719566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30723ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30733ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30743ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30778fb81238SShri Abhyankar 
30783ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30799566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3080aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30818fb81238SShri Abhyankar 
30823ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30839566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30859566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30869371c9d4SSatish Balay   rowidxs[0] = 0;
30879371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
308838b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30891c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309008401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309138b83642SBarry Smith   }
309238b83642SBarry Smith 
30933ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30959566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30969566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30973ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30999566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31009566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31028fb81238SShri Abhyankar }
31038fb81238SShri Abhyankar 
31043782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3105ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3106d71ae5a4SJacob Faibussowitsch {
31074aa3045dSJed Brown   IS          iscol_local;
3108c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3109c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31103782ecc7SHong Zhang 
31113782ecc7SHong Zhang   PetscFunctionBegin;
31123782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31143782ecc7SHong Zhang 
3115c5e4d11fSDmitry Karpeev   if (isstride) {
3116c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31179566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31189566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31199566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3120c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3121c5e4d11fSDmitry Karpeev   }
31223782ecc7SHong Zhang 
31231c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3124c5e4d11fSDmitry Karpeev   if (gisstride) {
3125c5e4d11fSDmitry Karpeev     PetscInt N;
31269566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31279566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31289566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31299566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3130c5e4d11fSDmitry Karpeev   } else {
3131c5bfad50SMark F. Adams     PetscInt cbs;
31329566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31339566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31349566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3135b79d0421SJed Brown   }
31363782ecc7SHong Zhang 
31373782ecc7SHong Zhang   *isseq = iscol_local;
31383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3139c5e4d11fSDmitry Karpeev }
31408d2139bdSHong Zhang 
3141ddfdf956SHong Zhang /*
31429c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31439c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3144ddfdf956SHong Zhang 
3145ddfdf956SHong Zhang  Input Parameters:
314627430b45SBarry Smith +   mat - matrix
314727430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31489c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
314927430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3150ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315127430b45SBarry Smith 
315227430b45SBarry Smith  Output Parameters:
315327430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315427430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315527430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315627430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3157ddfdf956SHong Zhang  */
3158ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3159d71ae5a4SJacob Faibussowitsch {
3160040216a4SHong Zhang   Vec             x, cmap;
3161040216a4SHong Zhang   const PetscInt *is_idx;
3162040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31639c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3164040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3165040216a4SHong Zhang   Mat             B    = a->B;
3166040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3167a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31688b3fa1f7SHong Zhang   MPI_Comm        comm;
31693a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31703782ecc7SHong Zhang 
31713782ecc7SHong Zhang   PetscFunctionBegin;
31729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31739566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31748b3fa1f7SHong Zhang 
3175ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31779566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31789566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31799566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31800a351717SHong Zhang 
31819c988bcaSHong Zhang   /* Get start indices */
31829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3183ddfdf956SHong Zhang   isstart -= ncols;
31849566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3185040216a4SHong Zhang 
31869566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31879566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31889566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3190ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31918b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3192ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31939c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31948b3fa1f7SHong Zhang   }
31959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31979566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31988b3fa1f7SHong Zhang 
31999c988bcaSHong Zhang   /* Get iscol_d */
32009566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32019566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32029566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3203feb78a15SHong Zhang 
32049c988bcaSHong Zhang   /* Get isrow_d */
32059566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3206feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32089566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32099c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32109566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3211feb78a15SHong Zhang 
32129566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32139566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32149566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3215feb78a15SHong Zhang 
32169c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32179566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32189566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3219ddfdf956SHong Zhang 
32209566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322107250d77SHong Zhang 
32229566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32239566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322464efcef9SHong Zhang 
32259c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3226ddfdf956SHong Zhang   /* off-process column indices */
32279c988bcaSHong Zhang   count = 0;
32289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3230feb78a15SHong Zhang 
32319566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32329566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32338b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3234f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32359c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32361c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32371c645242SHong Zhang       count++;
32388b3fa1f7SHong Zhang     }
32398b3fa1f7SHong Zhang   }
32409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324207250d77SHong Zhang 
32439566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3244b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3245b6d9b4e0SHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32479c988bcaSHong Zhang   *garray = cmap1;
32489c988bcaSHong Zhang 
32499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3253040216a4SHong Zhang }
3254040216a4SHong Zhang 
3255b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3256d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3257d71ae5a4SJacob Faibussowitsch {
3258b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32591fd43edeSHong Zhang   Mat         M = NULL;
32603b00a383SHong Zhang   MPI_Comm    comm;
3261b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32623b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3263b20e2604SHong Zhang   PetscInt    n;
32643b00a383SHong Zhang 
32653b00a383SHong Zhang   PetscFunctionBegin;
32669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32673b00a383SHong Zhang 
32683b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3269b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327128b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32723b00a383SHong Zhang 
32739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327428b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32753b00a383SHong Zhang 
32769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
327728b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32783b00a383SHong Zhang 
3279b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3280b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32819566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32829566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328348a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32849566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32859566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32863b00a383SHong Zhang 
32873b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32889c988bcaSHong Zhang     const PetscInt *garray;
3289b20e2604SHong Zhang     PetscInt        BsubN;
32903b00a383SHong Zhang 
3291b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32929566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32933b00a383SHong Zhang 
3294b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32959566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32969566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32973b00a383SHong Zhang 
32989c988bcaSHong Zhang     /* Create submatrix M */
32999566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33003b00a383SHong Zhang 
3301b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3302b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33037cfce09cSHong Zhang 
33049566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3305b20e2604SHong Zhang     n = asub->B->cmap->N;
3306b20e2604SHong Zhang     if (BsubN > n) {
3307c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33087cfce09cSHong Zhang       const PetscInt *idx;
33099c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33109566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33117cfce09cSHong Zhang 
33129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33137cfce09cSHong Zhang       j = 0;
33149566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3315b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33167cfce09cSHong Zhang         if (j >= BsubN) break;
33179c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33187cfce09cSHong Zhang 
33199c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33207cfce09cSHong Zhang           idx_new[i] = idx[j++];
332198921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33227cfce09cSHong Zhang       }
33239566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33247cfce09cSHong Zhang 
33259566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33269566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33277cfce09cSHong Zhang 
3328b20e2604SHong Zhang     } else if (BsubN < n) {
332998921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3330b20e2604SHong Zhang     }
33317cfce09cSHong Zhang 
33329566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3333b20e2604SHong Zhang     *submat = M;
33343b00a383SHong Zhang 
3335e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33369566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33379566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33383b00a383SHong Zhang 
33399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33413b00a383SHong Zhang 
33429566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33443b00a383SHong Zhang   }
33453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33463b00a383SHong Zhang }
33473b00a383SHong Zhang 
3348d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3349d71ae5a4SJacob Faibussowitsch {
33501358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33513782ecc7SHong Zhang   PetscInt  csize;
335218e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33534a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33543782ecc7SHong Zhang   MPI_Comm  comm;
33553782ecc7SHong Zhang 
33563782ecc7SHong Zhang   PetscFunctionBegin;
3357bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3358a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33598f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33609566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3361d5761cdaSHong Zhang     if (isrow_d) {
3362d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3363d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3364d5761cdaSHong Zhang     } else {
33659566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3366d5761cdaSHong Zhang       if (iscol_local) {
3367d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3368d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3369d5761cdaSHong Zhang       }
3370d5761cdaSHong Zhang     }
33718f69fa7bSHong Zhang   } else {
3372e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337318e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33749566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33753782ecc7SHong Zhang     if (!n) {
337618e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33773782ecc7SHong Zhang     } else {
33789566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33799566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3380ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33818f69fa7bSHong Zhang     }
33823782ecc7SHong Zhang 
3383e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338418e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33859566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
338618e627e3SHong Zhang     if (!n) {
338718e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
338818e627e3SHong Zhang     } else {
33899566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33909566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
339118e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339218e627e3SHong Zhang     }
339318e627e3SHong Zhang 
33949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33951c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
339618e627e3SHong Zhang     sameRowDist = tsameDist[0];
339718e627e3SHong Zhang   }
339818e627e3SHong Zhang 
339918e627e3SHong Zhang   if (sameRowDist) {
3400b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34013b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34029566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34033ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3404b20e2604SHong Zhang     } else { /* sameRowDist */
34053b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34061358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34071358a193SHong Zhang         PetscBool sorted;
34089566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34099566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34109566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
341108401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34121358a193SHong Zhang 
34139566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34141358a193SHong Zhang         if (sorted) {
34151358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34169566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34173ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34183782ecc7SHong Zhang         }
34191358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
342048c0d076SHong Zhang         IS iscol_sub;
34219566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342248c0d076SHong Zhang         if (iscol_sub) {
34239566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34243ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342548c0d076SHong Zhang         }
34261358a193SHong Zhang       }
34271358a193SHong Zhang     }
34281358a193SHong Zhang   }
34293782ecc7SHong Zhang 
3430bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34313782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34329566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343328b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34343782ecc7SHong Zhang   } else {
343548a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34361358a193SHong Zhang   }
34373782ecc7SHong Zhang 
34389566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34399566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34408f69fa7bSHong Zhang 
3441b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34429566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3444b79d0421SJed Brown   }
34453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34464aa3045dSJed Brown }
34474aa3045dSJed Brown 
3448feb78a15SHong Zhang /*@C
344911a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3450feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3451feb78a15SHong Zhang 
3452d083f849SBarry Smith   Collective
3453feb78a15SHong Zhang 
3454feb78a15SHong Zhang   Input Parameters:
3455feb78a15SHong Zhang + comm   - MPI communicator
3456feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3457b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34582ef1f0ffSBarry Smith - garray - global index of `B` columns
3459feb78a15SHong Zhang 
3460feb78a15SHong Zhang   Output Parameter:
34612ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
346227430b45SBarry Smith 
3463feb78a15SHong Zhang   Level: advanced
3464feb78a15SHong Zhang 
3465feb78a15SHong Zhang   Notes:
346611a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346711a5261eSBarry Smith 
34682ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3469feb78a15SHong Zhang 
34701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3471feb78a15SHong Zhang @*/
3472d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3473d71ae5a4SJacob Faibussowitsch {
3474feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3475e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3476a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3477ce496241SStefano Zampini   const PetscScalar *oa;
3478e489de8fSHong Zhang   Mat                Bnew;
3479feb78a15SHong Zhang   PetscInt           m, n, N;
34804ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3481feb78a15SHong Zhang 
3482feb78a15SHong Zhang   PetscFunctionBegin;
34839566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34849566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348508401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348637a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3487b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
348808401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3489feb78a15SHong Zhang 
3490e489de8fSHong Zhang   /* Get global columns of mat */
34911c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3492feb78a15SHong Zhang 
34939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34944ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34954ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34964ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
34974ab4d6f4SRichard Tran Mills 
349837a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3499feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3500feb78a15SHong Zhang 
3501feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3502feb78a15SHong Zhang 
35039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3505feb78a15SHong Zhang 
3506e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3507feb78a15SHong Zhang   maij->A = A;
3508feb78a15SHong Zhang 
3509a5348796SHong Zhang   nz = oi[m];
3510a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3511a5348796SHong Zhang     col   = oj[i];
3512a5348796SHong Zhang     oj[i] = garray[col];
3513feb78a15SHong Zhang   }
3514feb78a15SHong Zhang 
3515e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35179566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3519e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3520e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3521e489de8fSHong Zhang   maij->B     = Bnew;
3522d5761cdaSHong Zhang 
352308401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3524d5761cdaSHong Zhang 
3525e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3526d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3527d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35289566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3529d5761cdaSHong Zhang 
3530e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3531e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3532e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3533feb78a15SHong Zhang 
3534a5348796SHong Zhang   /* condense columns of maij->B */
35359566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35389566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35399566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3541feb78a15SHong Zhang }
3542feb78a15SHong Zhang 
3543ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35444aa3045dSJed Brown 
3545d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3546d71ae5a4SJacob Faibussowitsch {
354798b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354885f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354998b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35501fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
355198b658c4SHong Zhang   MatScalar      *aa;
355200e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3553a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355498b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355598b658c4SHong Zhang   IS              iscol_sub, iscmap;
355698b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355718e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3558a31a438cSHong Zhang   MPI_Comm        comm;
35597e2c5f70SBarry Smith 
3560a0ff6018SBarry Smith   PetscFunctionBegin;
35619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3562d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35639566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356428b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35659566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3566d5761cdaSHong Zhang 
35679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356828b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3569d5761cdaSHong Zhang 
35709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
357128b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3572d5761cdaSHong Zhang 
35739566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3574d5761cdaSHong Zhang 
3575d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35763b00a383SHong Zhang     PetscBool flg;
35773b00a383SHong Zhang 
35789566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35799566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3580bcae8d28SHong Zhang 
35813b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3582366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35839566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3584366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35851c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3586366a327dSHong Zhang     if (allcolumns) {
3587366a327dSHong Zhang       iscol_sub = iscol_local;
35889566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35899566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3590366a327dSHong Zhang 
35913b00a383SHong Zhang     } else {
35921358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3593244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35949566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35959566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35969566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35978d2139bdSHong Zhang       count = 0;
3598a31a438cSHong Zhang       k     = 0;
3599a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3600a31a438cSHong Zhang         j = is_idx[i];
3601a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3602a31a438cSHong Zhang           /* diagonal part of mat */
36038d2139bdSHong Zhang           idx[count]     = j;
3604366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36054a3daf6eSHong Zhang         } else if (Bn) {
3606a31a438cSHong Zhang           /* off-diagonal part of mat */
3607a31a438cSHong Zhang           if (j == garray[k]) {
36088d2139bdSHong Zhang             idx[count]     = j;
3609a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3610a31a438cSHong Zhang           } else if (j > garray[k]) {
3611a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3612a31a438cSHong Zhang             if (j == garray[k]) {
3613a31a438cSHong Zhang               idx[count]     = j;
3614a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36158d2139bdSHong Zhang             }
36168d2139bdSHong Zhang           }
36178d2139bdSHong Zhang         }
36188d2139bdSHong Zhang       }
36199566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36208d2139bdSHong Zhang 
36219566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36229566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36239566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3624b6d9b4e0SHong Zhang 
36259566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3626a31a438cSHong Zhang     }
36278b3fa1f7SHong Zhang 
36283b00a383SHong Zhang     /* (3) Create sequential Msub */
36299566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3630d5761cdaSHong Zhang   }
36318d2139bdSHong Zhang 
36329566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363398b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363498b658c4SHong Zhang   ii  = aij->i;
36359566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3636a0ff6018SBarry Smith 
3637a0ff6018SBarry Smith   /*
3638a0ff6018SBarry Smith       m - number of local rows
3639a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3640a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3641a0ff6018SBarry Smith   */
36429566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364398b658c4SHong Zhang 
36443b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36453b00a383SHong Zhang     /* (4) Create parallel newmat */
364698b658c4SHong Zhang     PetscMPIInt rank, size;
3647bcae8d28SHong Zhang     PetscInt    csize;
364898b658c4SHong Zhang 
36499566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36509566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
365100e6dbe6SBarry Smith 
3652a0ff6018SBarry Smith     /*
365300e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365400e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3655a0ff6018SBarry Smith     */
365600e6dbe6SBarry Smith 
365700e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36589566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36596a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36609566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3661a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3662e2c4fddaSBarry Smith         nlocal = m;
36636a6a5d1dSBarry Smith       } else {
3664a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3665ab50ec6bSBarry Smith       }
3666ab50ec6bSBarry Smith     } else {
36676a6a5d1dSBarry Smith       nlocal = csize;
36686a6a5d1dSBarry Smith     }
36699566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
367000e6dbe6SBarry Smith     rstart = rend - nlocal;
3671aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
367200e6dbe6SBarry Smith 
367300e6dbe6SBarry Smith     /* next, compute all the lengths */
367498b658c4SHong Zhang     jj = aij->j;
36759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367600e6dbe6SBarry Smith     olens = dlens + m;
367700e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367800e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367900e6dbe6SBarry Smith       olen = 0;
368000e6dbe6SBarry Smith       dlen = 0;
368100e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
368215b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368300e6dbe6SBarry Smith         else dlen++;
368400e6dbe6SBarry Smith         jj++;
368500e6dbe6SBarry Smith       }
368600e6dbe6SBarry Smith       olens[i] = olen;
368700e6dbe6SBarry Smith       dlens[i] = dlen;
368800e6dbe6SBarry Smith     }
3689b6d9b4e0SHong Zhang 
36909566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36919566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
369298b658c4SHong Zhang 
36939566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36949566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36959566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36969566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36979566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36989566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3699d5761cdaSHong Zhang 
3700d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3701a0ff6018SBarry Smith     M = *newmat;
37029566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370308401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37049566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3705c48de900SBarry Smith     /*
3706c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3707c48de900SBarry Smith        rather than the slower MatSetValues().
3708c48de900SBarry Smith     */
3709c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3710c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3711a0ff6018SBarry Smith   }
3712548ecf4dSHong Zhang 
37133b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37159566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371698b658c4SHong Zhang 
371798b658c4SHong Zhang   jj = aij->j;
37189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3719a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3720a0ff6018SBarry Smith     row = rstart + i;
372100e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
372215b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37239566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37249371c9d4SSatish Balay     jj += nz;
37259371c9d4SSatish Balay     aa += nz;
3726a0ff6018SBarry Smith   }
37279566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37289566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3729a0ff6018SBarry Smith 
37309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3732fee21e36SBarry Smith 
37339566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373498b658c4SHong Zhang 
373598b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3736fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37373b00a383SHong Zhang     *newmat = M;
37389566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub));
37399566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
374098b658c4SHong Zhang 
37419566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub));
37429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374398b658c4SHong Zhang 
37449566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap));
37459566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3746bcae8d28SHong Zhang 
3747bcae8d28SHong Zhang     if (iscol_local) {
37489566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local));
37499566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3750bcae8d28SHong Zhang     }
375198b658c4SHong Zhang   }
37523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3753a0ff6018SBarry Smith }
3754273d9f13SBarry Smith 
3755df40acb1SHong Zhang /*
3756df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3757df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3758df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3759df40acb1SHong Zhang 
376011a5261eSBarry Smith   This requires a sequential iscol with all indices.
3761df40acb1SHong Zhang */
3762d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3763d71ae5a4SJacob Faibussowitsch {
3764df40acb1SHong Zhang   PetscMPIInt rank, size;
3765df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3766df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3767df40acb1SHong Zhang   Mat         M, Mreuse;
376898b658c4SHong Zhang   MatScalar  *aa, *vwork;
3769df40acb1SHong Zhang   MPI_Comm    comm;
3770df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37710b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3772df40acb1SHong Zhang 
3773df40acb1SHong Zhang   PetscFunctionBegin;
37749566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37769566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3777df40acb1SHong Zhang 
37780b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37799566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37809566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37810b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37821c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37830b27a90eSHong Zhang 
3784df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37859566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378628b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37879566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3788df40acb1SHong Zhang   } else {
37899566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3790df40acb1SHong Zhang   }
3791df40acb1SHong Zhang 
3792df40acb1SHong Zhang   /*
3793df40acb1SHong Zhang       m - number of local rows
3794df40acb1SHong Zhang       n - number of columns (same on all processors)
3795df40acb1SHong Zhang       rstart - first row in new global matrix generated
3796df40acb1SHong Zhang   */
37979566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37989566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3799df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3800df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3801df40acb1SHong Zhang     ii  = aij->i;
3802df40acb1SHong Zhang     jj  = aij->j;
3803df40acb1SHong Zhang 
3804df40acb1SHong Zhang     /*
3805df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3806df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3807df40acb1SHong Zhang     */
3808df40acb1SHong Zhang 
3809df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3810df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38119566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3812df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3813df40acb1SHong Zhang         nlocal = m;
3814df40acb1SHong Zhang       } else {
3815df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3816df40acb1SHong Zhang       }
3817df40acb1SHong Zhang     } else {
3818df40acb1SHong Zhang       nlocal = csize;
3819df40acb1SHong Zhang     }
38209566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3821df40acb1SHong Zhang     rstart = rend - nlocal;
3822aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3823df40acb1SHong Zhang 
3824df40acb1SHong Zhang     /* next, compute all the lengths */
38259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3826df40acb1SHong Zhang     olens = dlens + m;
3827df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3828df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3829df40acb1SHong Zhang       olen = 0;
3830df40acb1SHong Zhang       dlen = 0;
3831df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3832df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3833df40acb1SHong Zhang         else dlen++;
3834df40acb1SHong Zhang         jj++;
3835df40acb1SHong Zhang       }
3836df40acb1SHong Zhang       olens[i] = olen;
3837df40acb1SHong Zhang       dlens[i] = dlen;
3838df40acb1SHong Zhang     }
38399566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38409566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38419566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38429566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38439566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38449566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3845df40acb1SHong Zhang   } else {
3846df40acb1SHong Zhang     PetscInt ml, nl;
3847df40acb1SHong Zhang 
3848df40acb1SHong Zhang     M = *newmat;
38499566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
385008401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38519566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3852df40acb1SHong Zhang     /*
3853df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3854df40acb1SHong Zhang        rather than the slower MatSetValues().
3855df40acb1SHong Zhang     */
3856df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3857df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3858df40acb1SHong Zhang   }
38599566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3860df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3861df40acb1SHong Zhang   ii  = aij->i;
3862df40acb1SHong Zhang   jj  = aij->j;
38632e5835c6SStefano Zampini 
38642e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3866df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3867df40acb1SHong Zhang     row   = rstart + i;
3868df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38699371c9d4SSatish Balay     cwork = jj;
38708e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38719371c9d4SSatish Balay     vwork = aa;
38728e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38739566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3874df40acb1SHong Zhang   }
38759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3876df40acb1SHong Zhang 
38779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3879df40acb1SHong Zhang   *newmat = M;
3880df40acb1SHong Zhang 
3881df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3882df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38839566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38849566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3885df40acb1SHong Zhang   }
38863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3887df40acb1SHong Zhang }
3888df40acb1SHong Zhang 
3889ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3890d71ae5a4SJacob Faibussowitsch {
38916a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3892899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3893ccd8e176SBarry Smith   const PetscInt *JJ;
3894eeb24464SBarry Smith   PetscBool       nooffprocentries;
38956a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3896ccd8e176SBarry Smith 
3897ccd8e176SBarry Smith   PetscFunctionBegin;
3898aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3899899cda47SBarry Smith 
39009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3902d0f46423SBarry Smith   m      = B->rmap->n;
3903d0f46423SBarry Smith   cstart = B->cmap->rstart;
3904d0f46423SBarry Smith   cend   = B->cmap->rend;
3905d0f46423SBarry Smith   rstart = B->rmap->rstart;
3906899cda47SBarry Smith 
39079566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3908ccd8e176SBarry Smith 
390976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39108f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3911ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39128e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
391308401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391408401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391508401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3916ecc77c7aSBarry Smith     }
391776bd3646SJed Brown   }
3918ecc77c7aSBarry Smith 
39198f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3920b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39218e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3922ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3923ccd8e176SBarry Smith     d       = 0;
39240daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39250daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3926ccd8e176SBarry Smith     }
3927ccd8e176SBarry Smith     d_nnz[i] = d;
3928ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3929ccd8e176SBarry Smith   }
39309566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39319566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3932ccd8e176SBarry Smith 
39338f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3934ccd8e176SBarry Smith     ii = i + rstart;
39358e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3936ccd8e176SBarry Smith   }
3937eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3938eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3941eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3942ccd8e176SBarry Smith 
39436a3d2595SBarry Smith   /* count number of entries below block diagonal */
39446a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39456a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39466a3d2595SBarry Smith   Aij->ld = ld;
39476a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39486a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39496a3d2595SBarry Smith     j   = 0;
3950ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39516a3d2595SBarry Smith     ld[i] = j;
3952720a2405SPierre Jolivet     if (J) J += nnz;
39536a3d2595SBarry Smith   }
39546a3d2595SBarry Smith 
39559566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3957ccd8e176SBarry Smith }
3958ccd8e176SBarry Smith 
39591eea217eSSatish Balay /*@
396011a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3961ccd8e176SBarry Smith   (the default parallel PETSc format).
3962ccd8e176SBarry Smith 
3963d083f849SBarry Smith   Collective
3964ccd8e176SBarry Smith 
3965ccd8e176SBarry Smith   Input Parameters:
3966a1661176SMatthew Knepley + B - the matrix
3967ccd8e176SBarry Smith . i - the indices into j for the start of each local row (starts with zero)
39680daa03b5SJed Brown . j - the column indices for each local row (starts with zero)
3969ccd8e176SBarry Smith - v - optional values in the matrix
3970ccd8e176SBarry Smith 
3971ccd8e176SBarry Smith   Level: developer
3972ccd8e176SBarry Smith 
397312251496SSatish Balay   Notes:
39742ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39752ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397611a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397712251496SSatish Balay 
39782ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397912251496SSatish Balay 
3980a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3981a4bd8bc0SBarry Smith 
3982a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3983a4bd8bc0SBarry Smith 
3984a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3985a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3986a4bd8bc0SBarry Smith 
398712251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398812251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3989c5e4d11fSDmitry Karpeev   as shown
399027430b45SBarry Smith .vb
399127430b45SBarry Smith         1 0 0
399227430b45SBarry Smith         2 0 3     P0
399327430b45SBarry Smith        -------
399427430b45SBarry Smith         4 5 6     P1
399527430b45SBarry Smith 
399627430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399727430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399827430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399927430b45SBarry Smith         v =  {1,2,3}  [size = 3]
400027430b45SBarry Smith 
400127430b45SBarry Smith      Process1 [P1] rows_owned=[2]
400227430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400327430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400427430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400527430b45SBarry Smith .ve
400612251496SSatish Balay 
4007fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4008a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4009ccd8e176SBarry Smith @*/
4010d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4011d71ae5a4SJacob Faibussowitsch {
4012ccd8e176SBarry Smith   PetscFunctionBegin;
4013cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4015ccd8e176SBarry Smith }
4016ccd8e176SBarry Smith 
4017273d9f13SBarry Smith /*@C
401811a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4019273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4020273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
402120f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4022273d9f13SBarry Smith 
4023d083f849SBarry Smith   Collective
4024273d9f13SBarry Smith 
4025273d9f13SBarry Smith   Input Parameters:
40261c4f3114SJed Brown + B     - the matrix
4027273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4028273d9f13SBarry Smith            (same value is used for all local rows)
4029273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4030273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40312ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4032273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40333287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40343287b5eaSJed Brown            the diagonal entry even if it is zero.
4035273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4036273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4037273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4038273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40392ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4040273d9f13SBarry Smith            structure. The size of this array is equal to the number
4041273d9f13SBarry Smith            of local rows, i.e 'm'.
4042273d9f13SBarry Smith 
40432920cce0SJacob Faibussowitsch   Example Usage:
404427430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404527430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404627430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404727430b45SBarry Smith   as follows
404827430b45SBarry Smith 
404927430b45SBarry Smith .vb
405027430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
405127430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
405227430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405327430b45SBarry Smith     -------------------------------------
405427430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405527430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405627430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405727430b45SBarry Smith     -------------------------------------
405827430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405927430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
406027430b45SBarry Smith .ve
406127430b45SBarry Smith 
406227430b45SBarry Smith   This can be represented as a collection of submatrices as
406327430b45SBarry Smith .vb
406427430b45SBarry Smith       A B C
406527430b45SBarry Smith       D E F
406627430b45SBarry Smith       G H I
406727430b45SBarry Smith .ve
406827430b45SBarry Smith 
406927430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
407027430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
407127430b45SBarry Smith 
407227430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407327430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407427430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407527430b45SBarry Smith 
407627430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407727430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407827430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407927430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
408027430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
408127430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
408227430b45SBarry Smith 
408320f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408420f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408527430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408620f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
408727430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408820f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408927430b45SBarry Smith .vb
409027430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
409127430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
409227430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409327430b45SBarry Smith .ve
409420f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409527430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409627430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409727430b45SBarry Smith   34 values.
409827430b45SBarry Smith 
409920f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
410027430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
410120f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
410227430b45SBarry Smith .vb
410327430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410427430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410527430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410627430b45SBarry Smith .ve
410727430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410827430b45SBarry Smith   hence pre-allocation is perfect.
410927430b45SBarry Smith 
411027430b45SBarry Smith   Level: intermediate
411127430b45SBarry Smith 
411227430b45SBarry Smith   Notes:
411349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411449a6f317SBarry Smith 
411527430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41160598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4117651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4118273d9f13SBarry Smith 
4119273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4120273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4121273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4122273d9f13SBarry Smith 
4123273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4124a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4125a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4126a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4127a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4128a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4129a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4130a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4131a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4132273d9f13SBarry Smith 
41332ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4134273d9f13SBarry Smith 
413527430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4136aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413727430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4138aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4139aa95bbe8SBarry Smith 
41401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4141a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4142273d9f13SBarry Smith @*/
4143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4144d71ae5a4SJacob Faibussowitsch {
4145273d9f13SBarry Smith   PetscFunctionBegin;
41466ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41476ba663aaSJed Brown   PetscValidType(B, 1);
4148cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4150273d9f13SBarry Smith }
4151273d9f13SBarry Smith 
415258d36128SBarry Smith /*@
415311a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41548f8f2f0dSBarry Smith   CSR format for the local rows.
41552fb0ec9aSBarry Smith 
4156d083f849SBarry Smith   Collective
41572fb0ec9aSBarry Smith 
41582fb0ec9aSBarry Smith   Input Parameters:
41592fb0ec9aSBarry Smith + comm - MPI communicator
416011a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41612fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
416211a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
41632fb0ec9aSBarry Smith        calculated if N is given) For square matrices n is almost always m.
416411a5261eSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
416511a5261eSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4166483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41672fb0ec9aSBarry Smith . j    - column indices
4168f1f2ae84SBarry Smith - a    - optional matrix values
41692fb0ec9aSBarry Smith 
41702fb0ec9aSBarry Smith   Output Parameter:
41712fb0ec9aSBarry Smith . mat - the matrix
417203bfb495SBarry Smith 
41732fb0ec9aSBarry Smith   Level: intermediate
41742fb0ec9aSBarry Smith 
41752fb0ec9aSBarry Smith   Notes:
41762ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
41772fb0ec9aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
41782ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41792fb0ec9aSBarry Smith 
41802ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
418112251496SSatish Balay 
4182a4bd8bc0SBarry Smith   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArrays()`
4183a4bd8bc0SBarry Smith 
4184a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
4185a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4186a4bd8bc0SBarry Smith 
418712251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
418812251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4189c5e4d11fSDmitry Karpeev   as shown
41902ef1f0ffSBarry Smith .vb
41912ef1f0ffSBarry Smith         1 0 0
41922ef1f0ffSBarry Smith         2 0 3     P0
41932ef1f0ffSBarry Smith        -------
41942ef1f0ffSBarry Smith         4 5 6     P1
41958f8f2f0dSBarry Smith 
41962ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41972ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41982ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41992ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42002fb0ec9aSBarry Smith 
42012ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42022ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42032ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42042ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42052ef1f0ffSBarry Smith .ve
42062ef1f0ffSBarry Smith 
42071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4208a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42092fb0ec9aSBarry Smith @*/
4210d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4211d71ae5a4SJacob Faibussowitsch {
42122fb0ec9aSBarry Smith   PetscFunctionBegin;
421308401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421408401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42159566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42169566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42179566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42189566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42199566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42212fb0ec9aSBarry Smith }
42222fb0ec9aSBarry Smith 
42238f8f2f0dSBarry Smith /*@
422411a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42252ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42262ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42276a3d2595SBarry Smith 
42286a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42298f8f2f0dSBarry Smith 
42308f8f2f0dSBarry Smith   Collective
42318f8f2f0dSBarry Smith 
42328f8f2f0dSBarry Smith   Input Parameters:
42338f8f2f0dSBarry Smith + mat - the matrix
423411a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42358f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423611a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42378f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423811a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423911a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42408f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42418f8f2f0dSBarry Smith . J   - column indices
42428f8f2f0dSBarry Smith - v   - matrix values
42438f8f2f0dSBarry Smith 
42442ef1f0ffSBarry Smith   Level: deprecated
42458f8f2f0dSBarry Smith 
42461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4247a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42488f8f2f0dSBarry Smith @*/
4249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4250d71ae5a4SJacob Faibussowitsch {
42516a3d2595SBarry Smith   PetscInt        nnz, i;
42528f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42538f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4254fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4255fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42568f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42576a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42586a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42598f8f2f0dSBarry Smith 
42608f8f2f0dSBarry Smith   PetscFunctionBegin;
4261aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426208401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426308401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426408401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42658f8f2f0dSBarry Smith 
42669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42688f8f2f0dSBarry Smith 
42698f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42704c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42714c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42724c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42734c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42744c17f1ccSBarry Smith       }
42754c17f1ccSBarry Smith     }
42768f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42778f8f2f0dSBarry Smith     Iii = Ii[i];
42788f8f2f0dSBarry Smith     ldi = ld[i];
42798f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42809566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42819566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42838f8f2f0dSBarry Smith     ad += md;
42848f8f2f0dSBarry Smith     ao += nnz - md;
42858f8f2f0dSBarry Smith   }
42868f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42878f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42909566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42919566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42929566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42958f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42978f8f2f0dSBarry Smith }
42988f8f2f0dSBarry Smith 
42996a3d2595SBarry Smith /*@
430011a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43016a3d2595SBarry Smith 
43026a3d2595SBarry Smith   Collective
43036a3d2595SBarry Smith 
43046a3d2595SBarry Smith   Input Parameters:
43056a3d2595SBarry Smith + mat - the matrix
43066a3d2595SBarry Smith - v   - matrix values, stored by row
43076a3d2595SBarry Smith 
43086a3d2595SBarry Smith   Level: intermediate
43096a3d2595SBarry Smith 
4310a4bd8bc0SBarry Smith   Notes:
43116a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43126a3d2595SBarry Smith 
4313a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4314a4bd8bc0SBarry Smith 
43151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4316a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43176a3d2595SBarry Smith @*/
4318d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4319d71ae5a4SJacob Faibussowitsch {
43206a3d2595SBarry Smith   PetscInt        nnz, i, m;
43216a3d2595SBarry Smith   PetscBool       nooffprocentries;
43226a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43236a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43246a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43256a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43266a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43276a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43286a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43296a3d2595SBarry Smith 
43306a3d2595SBarry Smith   PetscFunctionBegin;
43316a3d2595SBarry Smith   m = mat->rmap->n;
43326a3d2595SBarry Smith 
43336a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43346a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43356a3d2595SBarry Smith   Iii = 0;
43366a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43376a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43386a3d2595SBarry Smith     ldi = ld[i];
43396a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43406a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43416a3d2595SBarry Smith     ad += md;
4342810441c8SPierre Jolivet     if (ao) {
4343810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4344810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43456a3d2595SBarry Smith       ao += nnz - md;
4346810441c8SPierre Jolivet     }
43476a3d2595SBarry Smith     Iii += nnz;
43486a3d2595SBarry Smith   }
43496a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43506a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43516a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43526a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43536a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43546a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43556a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43566a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43576a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43586a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43606a3d2595SBarry Smith }
43616a3d2595SBarry Smith 
4362273d9f13SBarry Smith /*@C
436311a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4364273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4365273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43662ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4367273d9f13SBarry Smith 
4368d083f849SBarry Smith   Collective
4369273d9f13SBarry Smith 
4370273d9f13SBarry Smith   Input Parameters:
4371273d9f13SBarry Smith + comm  - MPI communicator
437211a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4373273d9f13SBarry Smith            This value should be the same as the local size used in creating the
4374273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
4375273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437645f401ebSJose E. Roman        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4377273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
437811a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437911a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4380273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4381273d9f13SBarry Smith            (same value is used for all local rows)
4382273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4383273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
43842ef1f0ffSBarry Smith            or `NULL`, if `d_nz` is used to specify the nonzero structure.
4385273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
4386273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4387273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4388273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4389273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
43902ef1f0ffSBarry Smith            each row) or `NULL`, if `o_nz` is used to specify the nonzero
4391273d9f13SBarry Smith            structure. The size of this array is equal to the number
4392273d9f13SBarry Smith            of local rows, i.e 'm'.
4393273d9f13SBarry Smith 
4394273d9f13SBarry Smith   Output Parameter:
4395273d9f13SBarry Smith . A - the matrix
4396273d9f13SBarry Smith 
439727430b45SBarry Smith   Options Database Keys:
439827430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439927430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
440027430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
440127430b45SBarry Smith         See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix.
440227430b45SBarry Smith         Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440327430b45SBarry Smith 
44042ef1f0ffSBarry Smith   Level: intermediate
44052ef1f0ffSBarry Smith 
440627430b45SBarry Smith   Notes:
440777433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4408f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440911a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4410175b88e8SBarry Smith 
441149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
441249a6f317SBarry Smith 
44132ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44142ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4415273d9f13SBarry Smith   storage requirements for this matrix.
4416273d9f13SBarry Smith 
441711a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4418273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4419273d9f13SBarry Smith   that argument.
4420273d9f13SBarry Smith 
4421273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4422273d9f13SBarry Smith   (possibly both).
4423273d9f13SBarry Smith 
442433a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
442533a7c187SSatish Balay   first m0 rows belong to process 0, the next m1 rows belong to
442633a7c187SSatish Balay   process 1, the next m2 rows belong to process 2 etc.. where
442733a7c187SSatish Balay   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
442833a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4429273d9f13SBarry Smith 
443033a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443133a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4432df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443333a7c187SSatish Balay 
443433a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443533a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443633a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443733a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443833a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443933a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
444033a7c187SSatish Balay   illustrates this concept.
444133a7c187SSatish Balay 
444233a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444333a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444433a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444533a7c187SSatish Balay   local matrix (a rectangular submatrix).
4446273d9f13SBarry Smith 
44472ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4448273d9f13SBarry Smith 
444997d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44502ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4451da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4452da57b5cdSKarl Rupp .vb
44532ef1f0ffSBarry Smith   MatCreate(..., &A);
44542ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44552ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44562ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4457da57b5cdSKarl Rupp .ve
445897d05335SKris Buschelman 
4459273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4460273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4461273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4462273d9f13SBarry Smith 
44632920cce0SJacob Faibussowitsch   Example Usage:
4464273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4465273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4466273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4467efc377ccSKarl Rupp   as follows
4468273d9f13SBarry Smith 
4469273d9f13SBarry Smith .vb
4470273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4471273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4472273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4473273d9f13SBarry Smith     -------------------------------------
4474273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4475273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4476273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4477273d9f13SBarry Smith     -------------------------------------
4478273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4479273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4480273d9f13SBarry Smith .ve
4481273d9f13SBarry Smith 
4482da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4483273d9f13SBarry Smith 
4484273d9f13SBarry Smith .vb
4485273d9f13SBarry Smith       A B C
4486273d9f13SBarry Smith       D E F
4487273d9f13SBarry Smith       G H I
4488273d9f13SBarry Smith .ve
4489273d9f13SBarry Smith 
4490273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4491273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4492273d9f13SBarry Smith 
4493273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4494273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4495273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4496273d9f13SBarry Smith 
4497273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4498273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4499273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4500273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450127430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4502273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4503273d9f13SBarry Smith 
45042ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45052ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4506273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45072ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4508273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45092ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4510273d9f13SBarry Smith .vb
451127430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451227430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451327430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4514273d9f13SBarry Smith .ve
45152ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4516273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4517273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4518273d9f13SBarry Smith   34 values.
4519273d9f13SBarry Smith 
45202ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4521a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4522da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4523273d9f13SBarry Smith .vb
452427430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452527430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452627430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4527273d9f13SBarry Smith .ve
4528273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4529273d9f13SBarry Smith   hence pre-allocation is perfect.
4530273d9f13SBarry Smith 
45311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4532db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`
4533273d9f13SBarry Smith @*/
4534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4535d71ae5a4SJacob Faibussowitsch {
4536b1d57f15SBarry Smith   PetscMPIInt size;
4537273d9f13SBarry Smith 
4538273d9f13SBarry Smith   PetscFunctionBegin;
45399566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45409566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4542273d9f13SBarry Smith   if (size > 1) {
45439566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45449566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4545273d9f13SBarry Smith   } else {
45469566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4548273d9f13SBarry Smith   }
45493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4550273d9f13SBarry Smith }
4551195d93cdSBarry Smith 
45520b98dbb4SBarry Smith /*MC
45530b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45540b98dbb4SBarry Smith 
45550b98dbb4SBarry Smith     Synopsis:
45560b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45570b98dbb4SBarry Smith 
45580b98dbb4SBarry Smith     Not Collective
45590b98dbb4SBarry Smith 
45600b98dbb4SBarry Smith     Input Parameter:
45610b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45620b98dbb4SBarry Smith 
45630b98dbb4SBarry Smith     Output Parameters:
45640b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45654cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45662ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45670b98dbb4SBarry Smith -   ierr - error code
45680b98dbb4SBarry Smith 
45690b98dbb4SBarry Smith      Level: advanced
45700b98dbb4SBarry Smith 
45710b98dbb4SBarry Smith     Note:
45720b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45730b98dbb4SBarry Smith 
45741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45750b98dbb4SBarry Smith M*/
45760b98dbb4SBarry Smith 
45770b98dbb4SBarry Smith /*MC
45780b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45790b98dbb4SBarry Smith 
45800b98dbb4SBarry Smith     Synopsis:
45810b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45820b98dbb4SBarry Smith 
45830b98dbb4SBarry Smith     Not Collective
45840b98dbb4SBarry Smith 
45850b98dbb4SBarry Smith     Input Parameters:
45860b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45870b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45884cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45892ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45900b98dbb4SBarry Smith -   ierr - error code
45910b98dbb4SBarry Smith 
45920b98dbb4SBarry Smith      Level: advanced
45930b98dbb4SBarry Smith 
45941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45950b98dbb4SBarry Smith M*/
45960b98dbb4SBarry Smith 
4597127ca0efSMatthew Knepley /*@C
45980ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4599127ca0efSMatthew Knepley 
46002ef1f0ffSBarry Smith   Not Collective
4601127ca0efSMatthew Knepley 
4602127ca0efSMatthew Knepley   Input Parameter:
460311a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4604127ca0efSMatthew Knepley 
4605127ca0efSMatthew Knepley   Output Parameters:
460611a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
460711a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46082ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4609127ca0efSMatthew Knepley 
46100ab4885dSBarry Smith   Level: intermediate
46110ab4885dSBarry Smith 
461211a5261eSBarry Smith   Note:
46132ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46142ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46152ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4616127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4617127ca0efSMatthew Knepley 
4618fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46190ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4620127ca0efSMatthew Knepley 
4621fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4622127ca0efSMatthew Knepley @*/
4623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4624d71ae5a4SJacob Faibussowitsch {
4625195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
462604cf37c7SBarry Smith   PetscBool   flg;
4627b1d57f15SBarry Smith 
4628195d93cdSBarry Smith   PetscFunctionBegin;
46299566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463028b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463121e72a00SBarry Smith   if (Ad) *Ad = a->A;
463221e72a00SBarry Smith   if (Ao) *Ao = a->B;
463321e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4635195d93cdSBarry Smith }
4636a2243be0SBarry Smith 
4637d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4638d71ae5a4SJacob Faibussowitsch {
4639110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46409b8102ccSHong Zhang   PetscInt    *indx;
4641110bb6e1SHong Zhang   PetscScalar *values;
4642421ddf4dSJunchao Zhang   MatType      rootType;
46439b8102ccSHong Zhang 
46449b8102ccSHong Zhang   PetscFunctionBegin;
46459566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4646110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4647110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4648110bb6e1SHong Zhang 
464948a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4650a22543b6SHong Zhang     /* Check sum(n) = N */
46511c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465208401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4653a22543b6SHong Zhang 
46549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46559b8102ccSHong Zhang     rstart -= m;
46569b8102ccSHong Zhang 
4657d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46589b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46599566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46609566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46619566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46629b8102ccSHong Zhang     }
46639b8102ccSHong Zhang 
46649566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46659566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46669566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46679566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46689566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46699566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46719566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4672d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46739566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46749b8102ccSHong Zhang   }
46759b8102ccSHong Zhang 
4676110bb6e1SHong Zhang   /* numeric phase */
46779566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46789b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46799566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46809b8102ccSHong Zhang     Ii = i + rstart;
46819566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46829566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46839b8102ccSHong Zhang   }
46849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4687c5d6d63eSBarry Smith }
4688c5d6d63eSBarry Smith 
4689d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4690d71ae5a4SJacob Faibussowitsch {
46916718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
469251a7d1a8SHong Zhang 
469351a7d1a8SHong Zhang   PetscFunctionBegin;
46943ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46959566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46969566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46979566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46989566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46999566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47079566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471051a7d1a8SHong Zhang }
471151a7d1a8SHong Zhang 
4712c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4713c6db04a5SJed Brown #include <petscbt.h>
47144ebed01fSBarry Smith 
4715d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4716d71ae5a4SJacob Faibussowitsch {
4717ce94432eSBarry Smith   MPI_Comm             comm;
471855d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4719b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4720a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4721b1d57f15SBarry Smith   PetscInt             proc, m;
4722b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4723b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4724b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
472555d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
472655d1abb9SHong Zhang   MPI_Status          *status;
4727fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4728dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
472955d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4730776b82aeSLisandro Dalcin   PetscContainer       container;
473155d1abb9SHong Zhang 
473255d1abb9SHong Zhang   PetscFunctionBegin;
47339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47353c2c1871SHong Zhang 
47369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
473855d1abb9SHong Zhang 
47399566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474028b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47419566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4743fff043a9SJunchao Zhang   aa = a_a;
4744bf0cc555SLisandro Dalcin 
474555d1abb9SHong Zhang   bi     = merge->bi;
474655d1abb9SHong Zhang   bj     = merge->bj;
474755d1abb9SHong Zhang   buf_ri = merge->buf_ri;
474855d1abb9SHong Zhang   buf_rj = merge->buf_rj;
474955d1abb9SHong Zhang 
47509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47517a2fc3feSBarry Smith   owners = merge->rowmap->range;
475255d1abb9SHong Zhang   len_s  = merge->len_s;
475355d1abb9SHong Zhang 
475455d1abb9SHong Zhang   /* send and recv matrix values */
47559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47569566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
475755d1abb9SHong Zhang 
47589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
475955d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476055d1abb9SHong Zhang     if (!len_s[proc]) continue;
476155d1abb9SHong Zhang     i = owners[proc];
47629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476355d1abb9SHong Zhang     k++;
476455d1abb9SHong Zhang   }
476555d1abb9SHong Zhang 
47669566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47679566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47689566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
476955d1abb9SHong Zhang 
47709566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47719566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477255d1abb9SHong Zhang 
477355d1abb9SHong Zhang   /* insert mat values of mpimat */
47749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
477655d1abb9SHong Zhang 
477755d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
477855d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
477955d1abb9SHong Zhang     nrows       = *(buf_ri_k[k]);
478055d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4781a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478255d1abb9SHong Zhang   }
478355d1abb9SHong Zhang 
478455d1abb9SHong Zhang   /* set values of ba */
47857a2fc3feSBarry Smith   m = merge->rowmap->n;
478655d1abb9SHong Zhang   for (i = 0; i < m; i++) {
478755d1abb9SHong Zhang     arow = owners[rank] + i;
478855d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
478955d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47909566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479155d1abb9SHong Zhang 
479255d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479355d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479455d1abb9SHong Zhang     aj     = a->j + ai[arow];
4795fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
479655d1abb9SHong Zhang     nextaj = 0;
479755d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
479855d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
479955d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480055d1abb9SHong Zhang       }
480155d1abb9SHong Zhang     }
480255d1abb9SHong Zhang 
480355d1abb9SHong Zhang     /* add received vals into ba */
480455d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
480555d1abb9SHong Zhang       /* i-th row */
480655d1abb9SHong Zhang       if (i == *nextrow[k]) {
480755d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
480855d1abb9SHong Zhang         aj     = buf_rj[k] + *(nextai[k]);
480955d1abb9SHong Zhang         aa     = abuf_r[k] + *(nextai[k]);
481055d1abb9SHong Zhang         nextaj = 0;
481155d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481255d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481355d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481455d1abb9SHong Zhang           }
481555d1abb9SHong Zhang         }
48169371c9d4SSatish Balay         nextrow[k]++;
48179371c9d4SSatish Balay         nextai[k]++;
481855d1abb9SHong Zhang       }
481955d1abb9SHong Zhang     }
48209566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482155d1abb9SHong Zhang   }
48229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
482555d1abb9SHong Zhang 
48269566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48279566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48289566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48299566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483255d1abb9SHong Zhang }
483338f152feSBarry Smith 
4834d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4835d71ae5a4SJacob Faibussowitsch {
483655a3bba9SHong Zhang   Mat                  B_mpi;
4837c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4838b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4839b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4840d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4841a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4842c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4843b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484455d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
484558cb9c82SHong Zhang   MPI_Status          *status;
48460298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4847be0fcf8dSHong Zhang   PetscBT              lnkbt;
484851a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4849776b82aeSLisandro Dalcin   PetscContainer       container;
485002c68681SHong Zhang 
4851e5f2cdd8SHong Zhang   PetscFunctionBegin;
48529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48533c2c1871SHong Zhang 
485438f152feSBarry Smith   /* make sure it is a PETSc comm */
48559566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
485855d1abb9SHong Zhang 
48599566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4861e5f2cdd8SHong Zhang 
48626abd8857SHong Zhang   /* determine row ownership */
48639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48649566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487055d1abb9SHong Zhang 
48717a2fc3feSBarry Smith   m      = merge->rowmap->n;
48727a2fc3feSBarry Smith   owners = merge->rowmap->range;
48736abd8857SHong Zhang 
48746abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48753e06a4e6SHong Zhang   len_s = merge->len_s;
487651a7d1a8SHong Zhang 
48772257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4878c2234fe3SHong Zhang   merge->nsend = 0;
4879409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48802257cef7SHong Zhang     len_si[proc] = 0;
48813e06a4e6SHong Zhang     if (proc == rank) {
48826abd8857SHong Zhang       len_s[proc] = 0;
48833e06a4e6SHong Zhang     } else {
488402c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48853e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48863e06a4e6SHong Zhang     }
48873e06a4e6SHong Zhang     if (len_s[proc]) {
4888c2234fe3SHong Zhang       merge->nsend++;
48892257cef7SHong Zhang       nrows = 0;
48902257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48912257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48922257cef7SHong Zhang       }
48932257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48942257cef7SHong Zhang       len += len_si[proc];
4895409913e3SHong Zhang     }
489658cb9c82SHong Zhang   }
4897409913e3SHong Zhang 
48982257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48999566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49009566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4901671beff6SHong Zhang 
49023e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49039566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49049566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
490502c68681SHong Zhang 
49063e06a4e6SHong Zhang   /* post the Isend of j-structure */
49079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49083e06a4e6SHong Zhang 
49092257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4910409913e3SHong Zhang     if (!len_s[proc]) continue;
491102c68681SHong Zhang     i = owners[proc];
49129566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491351a7d1a8SHong Zhang     k++;
491451a7d1a8SHong Zhang   }
491551a7d1a8SHong Zhang 
49163e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49179566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49189566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
491902c68681SHong Zhang 
492002c68681SHong Zhang   /* send and recv i-structure */
49219566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49229566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492302c68681SHong Zhang 
49249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49253e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49262257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
492702c68681SHong Zhang     if (!len_s[proc]) continue;
49283e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49293e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49303e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49313e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49323e06a4e6SHong Zhang     */
49332257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49343e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49353e06a4e6SHong Zhang     buf_si[0]   = nrows;
49363e06a4e6SHong Zhang     buf_si_i[0] = 0;
49373e06a4e6SHong Zhang     nrows       = 0;
49383e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49393e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49403e06a4e6SHong Zhang       if (anzi) {
49413e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49423e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49433e06a4e6SHong Zhang         nrows++;
49443e06a4e6SHong Zhang       }
49453e06a4e6SHong Zhang     }
49469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
494702c68681SHong Zhang     k++;
49482257cef7SHong Zhang     buf_si += len_si[proc];
494902c68681SHong Zhang   }
49502257cef7SHong Zhang 
49519566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49529566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495302c68681SHong Zhang 
49549566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
495548a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49563e06a4e6SHong Zhang 
49579566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49589566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49599566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49609566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49619566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49629566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496458cb9c82SHong Zhang 
4965bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
496658cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
496858cb9c82SHong Zhang   bi[0] = 0;
496958cb9c82SHong Zhang 
4970be0fcf8dSHong Zhang   /* create and initialize a linked list */
4971be0fcf8dSHong Zhang   nlnk = N + 1;
49729566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497358cb9c82SHong Zhang 
4974bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4975bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49769566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49772205254eSKarl Rupp 
497858cb9c82SHong Zhang   current_space = free_space;
497958cb9c82SHong Zhang 
4980bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49821d79065fSBarry Smith 
49833e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49842257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49853e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49863e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4987a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49883e06a4e6SHong Zhang   }
49892257cef7SHong Zhang 
4990d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4991bcc1bcd5SHong Zhang   len = 0;
499258cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499358cb9c82SHong Zhang     bnzi = 0;
499458cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
499558cb9c82SHong Zhang     arow = owners[rank] + i;
499658cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
499758cb9c82SHong Zhang     aj   = a->j + ai[arow];
49989566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
499958cb9c82SHong Zhang     bnzi += nlnk;
500058cb9c82SHong Zhang     /* add received col data into lnk */
500151a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500255d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50033e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50043e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50059566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50063e06a4e6SHong Zhang         bnzi += nlnk;
50079371c9d4SSatish Balay         nextrow[k]++;
50089371c9d4SSatish Balay         nextai[k]++;
50093e06a4e6SHong Zhang       }
501058cb9c82SHong Zhang     }
5011bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501258cb9c82SHong Zhang 
501358cb9c82SHong Zhang     /* if free space is not available, make more free space */
501448a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
501558cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50169566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50179566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5018bcc1bcd5SHong Zhang 
501958cb9c82SHong Zhang     current_space->array += bnzi;
502058cb9c82SHong Zhang     current_space->local_used += bnzi;
502158cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502258cb9c82SHong Zhang 
502358cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502458cb9c82SHong Zhang   }
5025bcc1bcd5SHong Zhang 
50269566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5027bcc1bcd5SHong Zhang 
50289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50299566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50309566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5031409913e3SHong Zhang 
5032bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50339566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50349566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
503554b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50369566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
503754b84b50SHong Zhang   } else {
50389566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
503954b84b50SHong Zhang   }
50409566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50419566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50429566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5043d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50449566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
504558cb9c82SHong Zhang 
504690431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50476abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5048affca5deSHong Zhang   merge->bi        = bi;
5049affca5deSHong Zhang   merge->bj        = bj;
505002c68681SHong Zhang   merge->buf_ri    = buf_ri;
505102c68681SHong Zhang   merge->buf_rj    = buf_rj;
50520298fd71SBarry Smith   merge->coi       = NULL;
50530298fd71SBarry Smith   merge->coj       = NULL;
50540298fd71SBarry Smith   merge->owners_co = NULL;
5055affca5deSHong Zhang 
50569566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5057bf0cc555SLisandro Dalcin 
5058affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50599566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50609566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50619566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50629566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50639566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5064affca5deSHong Zhang   *mpimat = B_mpi;
506538f152feSBarry Smith 
50669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5068e5f2cdd8SHong Zhang }
506925616d81SHong Zhang 
5070d4036a1aSHong Zhang /*@C
507111a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5072d4036a1aSHong Zhang   matrices from each processor
5073d4036a1aSHong Zhang 
5074d083f849SBarry Smith   Collective
5075d4036a1aSHong Zhang 
5076d4036a1aSHong Zhang   Input Parameters:
5077d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5078d4036a1aSHong Zhang . seqmat - the input sequential matrices
507911a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508011a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508111a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5082d4036a1aSHong Zhang 
5083d4036a1aSHong Zhang   Output Parameter:
5084d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5085d4036a1aSHong Zhang 
5086d4036a1aSHong Zhang   Level: advanced
5087d4036a1aSHong Zhang 
508811a5261eSBarry Smith   Note:
5089d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5090d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
509111a5261eSBarry Smith   destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat.
50922ef1f0ffSBarry Smith 
50931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5094d4036a1aSHong Zhang @*/
5095d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5096d71ae5a4SJacob Faibussowitsch {
50977e63b356SHong Zhang   PetscMPIInt size;
509855d1abb9SHong Zhang 
509955d1abb9SHong Zhang   PetscFunctionBegin;
51009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51017e63b356SHong Zhang   if (size == 1) {
51029566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51037e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51049566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51057e63b356SHong Zhang     } else {
51069566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51077e63b356SHong Zhang     }
51089566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51107e63b356SHong Zhang   }
51119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511248a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51139566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51149566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
511655d1abb9SHong Zhang }
51174ebed01fSBarry Smith 
5118bc08b0f1SBarry Smith /*@
51192920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51208a9c020eSBarry Smith 
51218a9c020eSBarry Smith   Not Collective
51228a9c020eSBarry Smith 
51232fe279fdSBarry Smith   Input Parameter:
512420f4b53cSBarry Smith . A - the matrix
51258a9c020eSBarry Smith 
51268a9c020eSBarry Smith   Output Parameter:
51278a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51288a9c020eSBarry Smith 
51298a9c020eSBarry Smith   Level: developer
51308a9c020eSBarry Smith 
51318a9c020eSBarry Smith   Notes:
51322920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51332920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51342920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51352920cce0SJacob Faibussowitsch 
513611a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51378a9c020eSBarry Smith 
51382920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51392920cce0SJacob Faibussowitsch 
514011a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51418a9c020eSBarry Smith 
51421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51438a9c020eSBarry Smith @*/
5144d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5145d71ae5a4SJacob Faibussowitsch {
51468a9c020eSBarry Smith   PetscBool mpi;
51478a9c020eSBarry Smith 
51488a9c020eSBarry Smith   PetscFunctionBegin;
51498a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51508a9c020eSBarry Smith   if (mpi) {
51518a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51528a9c020eSBarry Smith   } else {
51538a9c020eSBarry Smith     *A_loc = A;
51548a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51558a9c020eSBarry Smith   }
51563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51578a9c020eSBarry Smith }
51588a9c020eSBarry Smith 
51598a9c020eSBarry Smith /*@
51602920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516125616d81SHong Zhang 
516232fba14fSHong Zhang   Not Collective
516325616d81SHong Zhang 
516425616d81SHong Zhang   Input Parameters:
516525616d81SHong Zhang + A     - the matrix
516611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
516725616d81SHong Zhang 
516825616d81SHong Zhang   Output Parameter:
516925616d81SHong Zhang . A_loc - the local sequential matrix generated
517025616d81SHong Zhang 
517125616d81SHong Zhang   Level: developer
517225616d81SHong Zhang 
517377c65a98SStefano Zampini   Notes:
51742920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51752920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51762920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51772920cce0SJacob Faibussowitsch 
517811a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51798a9c020eSBarry Smith 
51802920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51812920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51822920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51832920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518477c65a98SStefano Zampini 
51851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
518625616d81SHong Zhang @*/
5187d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5188d71ae5a4SJacob Faibussowitsch {
518901b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5190b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5191b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5192ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5193ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519477c65a98SStefano Zampini   PetscMPIInt        size;
5195d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51965a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51978661ff28SBarry Smith   PetscBool          match;
519825616d81SHong Zhang 
519925616d81SHong Zhang   PetscFunctionBegin;
52009566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520128b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520377c65a98SStefano Zampini   if (size == 1) {
520477c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52059566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
520677c65a98SStefano Zampini       *A_loc = mpimat->A;
520777c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52089566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
520977c65a98SStefano Zampini     }
52103ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521177c65a98SStefano Zampini   }
521270a9ba44SHong Zhang 
52139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5214b78526a6SJose E. Roman   a  = (Mat_SeqAIJ *)(mpimat->A)->data;
5215b78526a6SJose E. Roman   b  = (Mat_SeqAIJ *)(mpimat->B)->data;
52169371c9d4SSatish Balay   ai = a->i;
52179371c9d4SSatish Balay   aj = a->j;
52189371c9d4SSatish Balay   bi = b->i;
52199371c9d4SSatish Balay   bj = b->j;
52209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5222ce496241SStefano Zampini   aa = aav;
5223ce496241SStefano Zampini   ba = bav;
522401b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5226dea91ad1SHong Zhang     ci[0] = 0;
5227ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5230dea91ad1SHong Zhang     k = 0;
523101b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52325a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52335a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523401b7ae99SHong Zhang       /* off-diagonal portion of A */
52355a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52365a7d977cSHong Zhang         col = cmap[*bj];
52375a7d977cSHong Zhang         if (col >= cstart) break;
52389371c9d4SSatish Balay         cj[k] = col;
52399371c9d4SSatish Balay         bj++;
52405a7d977cSHong Zhang         ca[k++] = *ba++;
52415a7d977cSHong Zhang       }
52425a7d977cSHong Zhang       /* diagonal portion of A */
52435a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52445a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52455a7d977cSHong Zhang         ca[k++] = *aa++;
52465a7d977cSHong Zhang       }
52475a7d977cSHong Zhang       /* off-diagonal portion of A */
52485a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52495a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52505a7d977cSHong Zhang         ca[k++] = *ba++;
52515a7d977cSHong Zhang       }
525225616d81SHong Zhang     }
5253dea91ad1SHong Zhang     /* put together the new matrix */
52549566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5255dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5256dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5257dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5258e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5259e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5260dea91ad1SHong Zhang     mat->nonew   = 0;
52615a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52625a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5263fff043a9SJunchao Zhang     ci  = mat->i;
5264fff043a9SJunchao Zhang     cj  = mat->j;
52659566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52665a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52675a7d977cSHong Zhang       /* off-diagonal portion of A */
52685a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52695a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52705a7d977cSHong Zhang         col = cmap[*bj];
52715a7d977cSHong Zhang         if (col >= cstart) break;
52729371c9d4SSatish Balay         *cam++ = *ba++;
52739371c9d4SSatish Balay         bj++;
52745a7d977cSHong Zhang       }
52755a7d977cSHong Zhang       /* diagonal portion of A */
5276ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5277a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52785a7d977cSHong Zhang       /* off-diagonal portion of A */
5279f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52809371c9d4SSatish Balay         *cam++ = *ba++;
52819371c9d4SSatish Balay         bj++;
5282f33d1a9aSHong Zhang       }
52835a7d977cSHong Zhang     }
52849566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
528598921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52889566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529025616d81SHong Zhang }
529125616d81SHong Zhang 
5292ed502f03SStefano Zampini /*@
529311a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52944cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5295ed502f03SStefano Zampini 
5296ed502f03SStefano Zampini   Not Collective
5297ed502f03SStefano Zampini 
5298ed502f03SStefano Zampini   Input Parameters:
5299ed502f03SStefano Zampini + A     - the matrix
530011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5301ed502f03SStefano Zampini 
5302d8d19677SJose E. Roman   Output Parameters:
53032ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5304ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5305ed502f03SStefano Zampini 
5306ed502f03SStefano Zampini   Level: developer
5307ed502f03SStefano Zampini 
530811a5261eSBarry Smith   Note:
53092ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53104cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5311ed502f03SStefano Zampini 
53121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5313ed502f03SStefano Zampini @*/
5314d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5315d71ae5a4SJacob Faibussowitsch {
5316ed502f03SStefano Zampini   Mat             Ao, Ad;
5317ed502f03SStefano Zampini   const PetscInt *cmap;
5318ed502f03SStefano Zampini   PetscMPIInt     size;
5319ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5320ed502f03SStefano Zampini 
5321ed502f03SStefano Zampini   PetscFunctionBegin;
53229566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5324ed502f03SStefano Zampini   if (size == 1) {
5325ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53269566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5327ed502f03SStefano Zampini       *A_loc = Ad;
5328ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53299566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5330ed502f03SStefano Zampini     }
53319566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53323ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5333ed502f03SStefano Zampini   }
53349566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5336ed502f03SStefano Zampini   if (f) {
53379566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5338ed502f03SStefano Zampini   } else {
5339ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5340ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5341ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5342ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5343ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5344ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5345ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5346ed502f03SStefano Zampini     PetscScalar       *ca;
5347ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5348ed502f03SStefano Zampini 
53499566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53509566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53519566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53529566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5353ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5354ed502f03SStefano Zampini       PetscInt k;
53559566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5358ed502f03SStefano Zampini       ci[0] = 0;
5359ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5360ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5361ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5362ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5363ed502f03SStefano Zampini         /* diagonal portion of A */
5364ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5365ed502f03SStefano Zampini           cj[k] = *aj++;
5366ed502f03SStefano Zampini           ca[k] = *aa++;
5367ed502f03SStefano Zampini         }
5368ed502f03SStefano Zampini         /* off-diagonal portion of A */
5369ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5370ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5371ed502f03SStefano Zampini           ca[k] = *ba++;
5372ed502f03SStefano Zampini         }
5373ed502f03SStefano Zampini       }
5374ed502f03SStefano Zampini       /* put together the new matrix */
53759566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5376ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5377ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5378ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5379ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5380ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5381ed502f03SStefano Zampini       c->nonew   = 0;
53829566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5383ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53849566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5385ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5386ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5387ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5388ed502f03SStefano Zampini         /* diagonal portion of A */
5389ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5390ed502f03SStefano Zampini         /* off-diagonal portion of A */
5391ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5392ed502f03SStefano Zampini       }
53939566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539498921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5397ed502f03SStefano Zampini     if (glob) {
5398ed502f03SStefano Zampini       PetscInt cst, *gidx;
5399ed502f03SStefano Zampini 
54009566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54019566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5402ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5403ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54049566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5405ed502f03SStefano Zampini     }
5406ed502f03SStefano Zampini   }
54079566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5409ed502f03SStefano Zampini }
5410ed502f03SStefano Zampini 
541132fba14fSHong Zhang /*@C
541211a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541332fba14fSHong Zhang 
541432fba14fSHong Zhang   Not Collective
541532fba14fSHong Zhang 
541632fba14fSHong Zhang   Input Parameters:
541732fba14fSHong Zhang + A     - the matrix
541811a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
541920f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542020f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542132fba14fSHong Zhang 
542232fba14fSHong Zhang   Output Parameter:
542332fba14fSHong Zhang . A_loc - the local sequential matrix generated
542432fba14fSHong Zhang 
542532fba14fSHong Zhang   Level: developer
542632fba14fSHong Zhang 
54271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
542832fba14fSHong Zhang @*/
5429d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5430d71ae5a4SJacob Faibussowitsch {
543132fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543232fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543332fba14fSHong Zhang   IS          isrowa, iscola;
543432fba14fSHong Zhang   Mat        *aloc;
54354a2b5492SBarry Smith   PetscBool   match;
543632fba14fSHong Zhang 
543732fba14fSHong Zhang   PetscFunctionBegin;
54389566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
543928b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544132fba14fSHong Zhang   if (!row) {
54429371c9d4SSatish Balay     start = A->rmap->rstart;
54439371c9d4SSatish Balay     end   = A->rmap->rend;
54449566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
544532fba14fSHong Zhang   } else {
544632fba14fSHong Zhang     isrowa = *row;
544732fba14fSHong Zhang   }
544832fba14fSHong Zhang   if (!col) {
5449d0f46423SBarry Smith     start = A->cmap->rstart;
545032fba14fSHong Zhang     cmap  = a->garray;
5451d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5452d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545432fba14fSHong Zhang     ncols = 0;
545532fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
545632fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
545732fba14fSHong Zhang       else break;
545832fba14fSHong Zhang     }
545932fba14fSHong Zhang     imark = i;
546032fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546132fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54629566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546332fba14fSHong Zhang   } else {
546432fba14fSHong Zhang     iscola = *col;
546532fba14fSHong Zhang   }
546632fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
546832fba14fSHong Zhang     aloc[0] = *A_loc;
546932fba14fSHong Zhang   }
54709566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5471109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54729566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5473109e0772SStefano Zampini   }
547432fba14fSHong Zhang   *A_loc = aloc[0];
54759566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
547648a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
547748a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548032fba14fSHong Zhang }
548132fba14fSHong Zhang 
54825c65b9ecSFande Kong /*
54835c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54845c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54855c65b9ecSFande Kong  * on a global size.
54865c65b9ecSFande Kong  * */
5487ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5488d71ae5a4SJacob Faibussowitsch {
54895c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
54905c65b9ecSFande Kong   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth;
5491131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5492131c27b5Sprj-   PetscMPIInt            owner;
54935c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54945c65b9ecSFande Kong   const PetscInt        *lrowindices;
54955c65b9ecSFande Kong   PetscSF                sf, osf;
54965c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54975c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54985c65b9ecSFande Kong   MPI_Comm               comm;
54995c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5500fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55015c65b9ecSFande Kong 
55025c65b9ecSFande Kong   PetscFunctionBegin;
55039566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55045c65b9ecSFande Kong   /* plocalsize is the number of roots
55055c65b9ecSFande Kong    * nrows is the number of leaves
55065c65b9ecSFande Kong    * */
55079566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55099566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55115c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55125c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55135c65b9ecSFande Kong      * The row could be local or remote
55145c65b9ecSFande Kong      * */
551534bcad68SFande Kong     owner = 0;
551634bcad68SFande Kong     lidx  = 0;
55179566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55185c65b9ecSFande Kong     iremote[i].index = lidx;
55195c65b9ecSFande Kong     iremote[i].rank  = owner;
55205c65b9ecSFande Kong   }
55215c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5523f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55245c65b9ecSFande Kong    * offsets
55255c65b9ecSFande Kong    * */
55269566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55279566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55289566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5529bc8e477aSFande Kong 
55309566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55335c65b9ecSFande Kong   roffsets[0] = 0;
55345c65b9ecSFande Kong   roffsets[1] = 0;
55355c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55364cf0e950SBarry Smith     /* diagonal */
55375c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55384cf0e950SBarry Smith     /* off-diagonal */
55395c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55405c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55415c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55425c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55435c65b9ecSFande Kong   }
55449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55465c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55479566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55489566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55519566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55529566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55539566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55545c65b9ecSFande Kong   dntotalcols = 0;
55555c65b9ecSFande Kong   ontotalcols = 0;
5556bc8e477aSFande Kong   ncol        = 0;
55575c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55585c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5559bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55604cf0e950SBarry Smith     /* diagonal */
55615c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55624cf0e950SBarry Smith     /* off-diagonal */
55635c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55645c65b9ecSFande Kong   }
55655c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55665c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55675c65b9ecSFande Kong    * */
55689566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55699566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55709566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55715c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55724cf0e950SBarry Smith   /* diagonal */
55739566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55744cf0e950SBarry Smith   /* off-diagonal */
55759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55764cf0e950SBarry Smith   /* diagonal */
55779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55784cf0e950SBarry Smith   /* off-diagonal */
55799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55805c65b9ecSFande Kong   dntotalcols = 0;
55815c65b9ecSFande Kong   ontotalcols = 0;
55825c65b9ecSFande Kong   ntotalcols  = 0;
55835c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558434bcad68SFande Kong     owner = 0;
55859566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55865c65b9ecSFande Kong     /* Set iremote for diag matrix */
55875c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55885c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55895c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55905c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55915c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55925c65b9ecSFande Kong     }
55934cf0e950SBarry Smith     /* off-diagonal */
55945c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55955c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55965c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55975c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55985c65b9ecSFande Kong     }
55995c65b9ecSFande Kong   }
56009566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56019566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56029566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56039566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56045c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56055c65b9ecSFande Kong    * Diag matrix
56065c65b9ecSFande Kong    * */
56079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56089566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56099566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56105c65b9ecSFande Kong 
56119566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56124cf0e950SBarry Smith   /* off-diagonal */
56139566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56184cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56199566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56219566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56225c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56235c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56255c65b9ecSFande Kong   /* We want P_oth store global indices */
56269566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56275c65b9ecSFande Kong   /* Use memory scalable approach */
56289566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56299566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56309566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56319566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56325c65b9ecSFande Kong   /* Convert back to local indices */
56335c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56349566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56355c65b9ecSFande Kong   nout = 0;
56369566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
563708401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56389566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56395c65b9ecSFande Kong   /* Exchange values */
56409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56445c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56455c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56485c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56499566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56509566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56519566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56529566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56545c65b9ecSFande Kong }
56555c65b9ecSFande Kong 
56565c65b9ecSFande Kong /*
56575c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56585c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56595c65b9ecSFande Kong  * */
5660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5661d71ae5a4SJacob Faibussowitsch {
56625c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5663bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5664bc8e477aSFande Kong   IS          rows, map;
5665bc8e477aSFande Kong   PetscHMapI  hamp;
5666bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56675c65b9ecSFande Kong   MPI_Comm    comm;
56685c65b9ecSFande Kong   PetscSF     sf, osf;
5669bc8e477aSFande Kong   PetscBool   has;
56705c65b9ecSFande Kong 
56715c65b9ecSFande Kong   PetscFunctionBegin;
56729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56739566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56745c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56755c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56765c65b9ecSFande Kong    * */
56775c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56785c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5679eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56809566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5681bc8e477aSFande Kong     count = 0;
5682bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5683bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5684bc8e477aSFande Kong       key = a->garray[i] / dof;
56859566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5686bc8e477aSFande Kong       if (!has) {
5687bc8e477aSFande Kong         mapping[i] = count;
56889566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5689bc8e477aSFande Kong       } else {
5690bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5691bc8e477aSFande Kong         mapping[i] = count - 1;
56925c65b9ecSFande Kong       }
5693bc8e477aSFande Kong     }
56949566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56959566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5696eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56979566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56985c65b9ecSFande Kong     off = 0;
56999566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57009566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57019566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57029566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57035c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57049566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57059566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57069566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57079566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57089566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57095c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57105c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571135cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5712fff043a9SJunchao Zhang      */
5713fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5714fff043a9SJunchao Zhang 
57159566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57169566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
571708401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57185c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57195c65b9ecSFande Kong     /* Update values in place */
57209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57219566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57229566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57239566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57249566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57259566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57286718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57299566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57315c65b9ecSFande Kong }
57325c65b9ecSFande Kong 
573325616d81SHong Zhang /*@C
573420f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
573525616d81SHong Zhang 
5736c3339decSBarry Smith   Collective
573725616d81SHong Zhang 
573825616d81SHong Zhang   Input Parameters:
573911a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574011a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574225616d81SHong Zhang 
5743f1a722f8SMatthew G. Knepley   Output Parameters:
574427430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
574527430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5746f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
574725616d81SHong Zhang 
574825616d81SHong Zhang   Level: developer
574925616d81SHong Zhang 
575020f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575125616d81SHong Zhang @*/
5752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5753d71ae5a4SJacob Faibussowitsch {
5754899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5755b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
575625616d81SHong Zhang   IS          isrowb, iscolb;
57570298fd71SBarry Smith   Mat        *bseq = NULL;
575825616d81SHong Zhang 
575925616d81SHong Zhang   PetscFunctionBegin;
576020f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576120f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576325616d81SHong Zhang 
576425616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5765d0f46423SBarry Smith     start = A->cmap->rstart;
576625616d81SHong Zhang     cmap  = a->garray;
5767d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5768d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577025616d81SHong Zhang     ncols = 0;
57710390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577225616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577325616d81SHong Zhang       else break;
577425616d81SHong Zhang     }
577525616d81SHong Zhang     imark = i;
57760390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57770390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57789566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57799566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578025616d81SHong Zhang   } else {
578108401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57829371c9d4SSatish Balay     isrowb = *rowb;
57839371c9d4SSatish Balay     iscolb = *colb;
57849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
578525616d81SHong Zhang     bseq[0] = *B_seq;
578625616d81SHong Zhang   }
57879566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
578825616d81SHong Zhang   *B_seq = bseq[0];
57899566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579025616d81SHong Zhang   if (!rowb) {
57919566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579225616d81SHong Zhang   } else {
579325616d81SHong Zhang     *rowb = isrowb;
579425616d81SHong Zhang   }
579525616d81SHong Zhang   if (!colb) {
57969566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
579725616d81SHong Zhang   } else {
579825616d81SHong Zhang     *colb = iscolb;
579925616d81SHong Zhang   }
58009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580225616d81SHong Zhang }
5803429d309bSHong Zhang 
5804f8487c73SHong Zhang /*
580527430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
580601b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5807429d309bSHong Zhang 
5808c3339decSBarry Smith     Collective
5809429d309bSHong Zhang 
5810429d309bSHong Zhang    Input Parameters:
581127430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581227430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5813429d309bSHong Zhang 
5814429d309bSHong Zhang    Output Parameter:
58150298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58160298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58170298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5818598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5819429d309bSHong Zhang 
582011a5261eSBarry Smith     Developer Note:
582111a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58226eb45d04SBarry Smith      for this matrix. This is not desirable..
58236eb45d04SBarry Smith 
5824429d309bSHong Zhang     Level: developer
5825429d309bSHong Zhang 
5826f8487c73SHong Zhang */
5827d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5828d71ae5a4SJacob Faibussowitsch {
5829899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
583087025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58314b8d542aSHong Zhang   VecScatter         ctx;
5832ce94432eSBarry Smith   MPI_Comm           comm;
58333515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58343515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5835277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5836f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5837277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5838ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5839ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5840429d309bSHong Zhang 
5841429d309bSHong Zhang   PetscFunctionBegin;
58429566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5844a7c7454dSHong Zhang 
584520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
584620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58479566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5849a6b2eed2SHong Zhang 
5850ec07b8f8SHong Zhang   if (size == 1) {
5851ec07b8f8SHong Zhang     startsj_s = NULL;
5852ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585352f7967eSHong Zhang     *B_oth    = NULL;
58543ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5855ec07b8f8SHong Zhang   }
5856ec07b8f8SHong Zhang 
5857fa83eaafSHong Zhang   ctx = a->Mvctx;
58584b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58594b8d542aSHong Zhang 
58609566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58613515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58629566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58639566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5865ddea5d60SJunchao Zhang   rwaits = reqs;
58668e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5867429d309bSHong Zhang 
5868b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5869429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5870a6b2eed2SHong Zhang     /* i-array */
5871a6b2eed2SHong Zhang     /*  post receives */
58729566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5873a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587474268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5875e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58769566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5877429d309bSHong Zhang     }
5878a6b2eed2SHong Zhang 
5879a6b2eed2SHong Zhang     /* pack the outgoing message */
58809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58812205254eSKarl Rupp 
58822205254eSKarl Rupp     sstartsj[0] = 0;
58832205254eSKarl Rupp     rstartsj[0] = 0;
5884a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58853515ee7fSJunchao Zhang     if (nsends) {
58863515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58883515ee7fSJunchao Zhang     }
5889a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58903515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5891e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589287025532SHong Zhang       for (j = 0; j < nrows; j++) {
5893d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5894e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58959566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58962205254eSKarl Rupp 
5897e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58982205254eSKarl Rupp 
5899e42f35eeSHong Zhang           len += ncols;
59009566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5901e42f35eeSHong Zhang         }
5902a6b2eed2SHong Zhang         k++;
5903429d309bSHong Zhang       }
59049566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59052205254eSKarl Rupp 
5906dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5907429d309bSHong Zhang     }
590887025532SHong Zhang     /* recvs and sends of i-array are completed */
59099566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59109566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5911e42f35eeSHong Zhang 
5912a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5915a6b2eed2SHong Zhang 
591687025532SHong Zhang     /* create i-array of B_oth */
59179566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59182205254eSKarl Rupp 
591987025532SHong Zhang     b_othi[0] = 0;
5920a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5921a6b2eed2SHong Zhang     k         = 0;
5922a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59233515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59243515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
592587025532SHong Zhang       for (j = 0; j < nrows; j++) {
592687025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59279566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5928f91af8c7SBarry Smith         k++;
5929a6b2eed2SHong Zhang       }
5930dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5931a6b2eed2SHong Zhang     }
59329566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5933a6b2eed2SHong Zhang 
59346aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5937a6b2eed2SHong Zhang 
593887025532SHong Zhang     /* j-array */
5939a6b2eed2SHong Zhang     /*  post receives of j-array */
5940a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594187025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59429566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5943a6b2eed2SHong Zhang     }
5944e42f35eeSHong Zhang 
5945e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59463515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5947a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5948e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5949a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595087025532SHong Zhang       for (j = 0; j < nrows; j++) {
5951d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5952e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59539566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5954ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59559566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5956e42f35eeSHong Zhang         }
595787025532SHong Zhang       }
59589566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
595987025532SHong Zhang     }
596087025532SHong Zhang 
596187025532SHong Zhang     /* recvs and sends of j-array are completed */
59629566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596387025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5964b7f45c76SHong Zhang     sstartsj = *startsj_s;
59651d79065fSBarry Smith     rstartsj = *startsj_r;
596687025532SHong Zhang     bufa     = *bufa_ptr;
596787025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59689566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5969ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597087025532SHong Zhang 
597187025532SHong Zhang   /* a-array */
597287025532SHong Zhang   /*  post receives of a-array */
597387025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597487025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
597687025532SHong Zhang   }
5977e42f35eeSHong Zhang 
5978e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59793515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598087025532SHong Zhang   for (i = 0; i < nsends; i++) {
5981e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598287025532SHong Zhang     bufA  = bufa + sstartsj[i];
598387025532SHong Zhang     for (j = 0; j < nrows; j++) {
5984d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5985e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59869566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5987ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59889566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5989e42f35eeSHong Zhang       }
5990a6b2eed2SHong Zhang     }
59919566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5992a6b2eed2SHong Zhang   }
599387025532SHong Zhang   /* recvs and sends of a-array are completed */
59949566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59959566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5996a6b2eed2SHong Zhang 
599787025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5998a6b2eed2SHong Zhang     /* put together the new matrix */
59999566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6000a6b2eed2SHong Zhang 
6001a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6002a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
600387025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6004e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6005e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
600687025532SHong Zhang     b_oth->nonew   = 0;
6007a6b2eed2SHong Zhang 
60089566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6009b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60109566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60119566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6012dea91ad1SHong Zhang     } else {
6013b7f45c76SHong Zhang       *startsj_s = sstartsj;
60141d79065fSBarry Smith       *startsj_r = rstartsj;
601587025532SHong Zhang       *bufa_ptr  = bufa;
601687025532SHong Zhang     }
6017fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6019dea91ad1SHong Zhang   }
60203515ee7fSJunchao Zhang 
60219566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60229566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6025429d309bSHong Zhang }
6026ccd8e176SBarry Smith 
6027cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6028cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6029ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60309779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6031a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6032191b95cbSRichard Tran Mills #endif
6033ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6034cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60355d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6036cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60375d7652ecSHong Zhang #endif
6038d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6039d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6040d24d4204SJose E. Roman #endif
604163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
604263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
604363c07aadSStefano Zampini #endif
60443338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60453338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60463338378cSStefano Zampini #endif
6047d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6048d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6049d5e393b6SSuyash Tandon #endif
60503d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60513d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60523d0639e7SStefano Zampini #endif
6053d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60544222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60554222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
605617667f90SBarry Smith 
6057fc4dec0aSBarry Smith /*
6058fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6059fc4dec0aSBarry Smith 
6060fc4dec0aSBarry Smith                n                       p                          p
60612da392ccSBarry Smith         [             ]       [             ]         [                 ]
60622da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60632da392ccSBarry Smith         [             ]       [             ]         [                 ]
6064fc4dec0aSBarry Smith 
6065fc4dec0aSBarry Smith */
6066d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6067d71ae5a4SJacob Faibussowitsch {
6068fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6069fc4dec0aSBarry Smith 
6070fc4dec0aSBarry Smith   PetscFunctionBegin;
60719566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60729566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60739566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60759566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60767fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60779566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60789566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6080fc4dec0aSBarry Smith }
6081fc4dec0aSBarry Smith 
6082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6083d71ae5a4SJacob Faibussowitsch {
60846718818eSStefano Zampini   PetscBool cisdense;
6085fc4dec0aSBarry Smith 
6086fc4dec0aSBarry Smith   PetscFunctionBegin;
608708401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60889566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60899566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6090d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60929566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6093f75ecaa4SHong Zhang 
60944222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6096fc4dec0aSBarry Smith }
6097fc4dec0aSBarry Smith 
6098d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6099d71ae5a4SJacob Faibussowitsch {
61004222ddf1SHong Zhang   Mat_Product *product = C->product;
61014222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6102fc4dec0aSBarry Smith 
6103fc4dec0aSBarry Smith   PetscFunctionBegin;
610420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
610520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61064222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61074222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6109fc4dec0aSBarry Smith }
6110fc4dec0aSBarry Smith 
6111d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6112d71ae5a4SJacob Faibussowitsch {
61134222ddf1SHong Zhang   Mat_Product *product = C->product;
61144222ddf1SHong Zhang 
61154222ddf1SHong Zhang   PetscFunctionBegin;
611648a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61184222ddf1SHong Zhang }
6119394ed5ebSJunchao Zhang 
612027430b45SBarry Smith /*
612127430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6122394ed5ebSJunchao Zhang 
6123394ed5ebSJunchao Zhang   Input Parameters:
6124394ed5ebSJunchao Zhang 
6125651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6126651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6127394ed5ebSJunchao Zhang 
6128158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6129394ed5ebSJunchao Zhang 
6130394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6131394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6132394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6133394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6134394ed5ebSJunchao Zhang 
6135394ed5ebSJunchao Zhang     Similar for Set2.
6136394ed5ebSJunchao Zhang 
6137394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6138394ed5ebSJunchao Zhang 
6139158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6140394ed5ebSJunchao Zhang 
6141394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6142394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6143394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6144394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6145394ed5ebSJunchao Zhang */
6146d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6147d71ae5a4SJacob Faibussowitsch {
6148394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6149394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6150394ed5ebSJunchao Zhang 
6151394ed5ebSJunchao Zhang   PetscFunctionBegin;
61529566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6153394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6154394ed5ebSJunchao Zhang   i[0]        = 0;
6155394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6156394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6157394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6158394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6159394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6160394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6161394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6162394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6163394ed5ebSJunchao Zhang         imap1[t1] = t;
6164394ed5ebSJunchao Zhang         imap2[t2] = t;
6165394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6166394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61679371c9d4SSatish Balay         t1++;
61689371c9d4SSatish Balay         t2++;
61699371c9d4SSatish Balay         t++;
6170394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6171394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6172394ed5ebSJunchao Zhang         imap1[t1] = t;
6173394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61749371c9d4SSatish Balay         t1++;
61759371c9d4SSatish Balay         t++;
6176394ed5ebSJunchao Zhang       } else {
6177394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6178394ed5ebSJunchao Zhang         imap2[t2] = t;
6179394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61809371c9d4SSatish Balay         t2++;
61819371c9d4SSatish Balay         t++;
6182394ed5ebSJunchao Zhang       }
6183394ed5ebSJunchao Zhang     }
6184394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6185394ed5ebSJunchao Zhang     while (b1 < e1) {
6186394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6187394ed5ebSJunchao Zhang       imap1[t1] = t;
6188394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61899371c9d4SSatish Balay       t1++;
61909371c9d4SSatish Balay       t++;
6191394ed5ebSJunchao Zhang     }
6192394ed5ebSJunchao Zhang     while (b2 < e2) {
6193394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6194394ed5ebSJunchao Zhang       imap2[t2] = t;
6195394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61969371c9d4SSatish Balay       t2++;
61979371c9d4SSatish Balay       t++;
6198394ed5ebSJunchao Zhang     }
6199394ed5ebSJunchao Zhang     i[r + 1] = t;
6200394ed5ebSJunchao Zhang   }
62013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6202394ed5ebSJunchao Zhang }
6203394ed5ebSJunchao Zhang 
620427430b45SBarry Smith /*
620527430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6206394ed5ebSJunchao Zhang 
6207394ed5ebSJunchao Zhang   Input Parameters:
6208394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6209394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6210394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6211394ed5ebSJunchao Zhang 
6212394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6213394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6214394ed5ebSJunchao Zhang 
6215394ed5ebSJunchao Zhang   Output Parameters:
6216394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6217394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6218394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6219394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6220394ed5ebSJunchao Zhang 
6221394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6222158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6223158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6224394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6225394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6226394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6227394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6228394ed5ebSJunchao Zhang 
6229394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6230394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6231394ed5ebSJunchao Zhang 
6232394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6233394ed5ebSJunchao Zhang 
6234158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6235394ed5ebSJunchao Zhang */
6236d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6237d71ae5a4SJacob Faibussowitsch {
6238394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6239394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6240394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6241394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6242394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6243394ed5ebSJunchao Zhang 
6244394ed5ebSJunchao Zhang   PetscFunctionBegin;
62459566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62469566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6247394ed5ebSJunchao Zhang   m = rend - rstart;
6248394ed5ebSJunchao Zhang 
6249651b1cf9SStefano Zampini   /* Skip negative rows */
6250651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62519371c9d4SSatish Balay     if (i[k] >= 0) break;
6252394ed5ebSJunchao Zhang 
6253394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6254394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6255394ed5ebSJunchao Zhang   */
6256394ed5ebSJunchao Zhang   while (k < n) {
6257394ed5ebSJunchao Zhang     row = i[k];
6258394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62599371c9d4SSatish Balay     for (s = k; s < n; s++)
62609371c9d4SSatish Balay       if (i[s] != row) break;
6261651b1cf9SStefano Zampini 
6262651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6263394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6264651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
626554c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6266394ed5ebSJunchao Zhang     }
62679566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6268158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6269394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6270394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6271394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6272394ed5ebSJunchao Zhang 
6273394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6274394ed5ebSJunchao Zhang     Atot += mid - k;
6275394ed5ebSJunchao Zhang     Btot += s - mid;
6276394ed5ebSJunchao Zhang 
6277651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6278394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6279394ed5ebSJunchao Zhang       col = j[p];
62809371c9d4SSatish Balay       do {
6281651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62829371c9d4SSatish Balay         p++;
6283651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6284394ed5ebSJunchao Zhang       Annz++;
6285394ed5ebSJunchao Zhang     }
6286394ed5ebSJunchao Zhang 
6287651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6288394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6289394ed5ebSJunchao Zhang       col = j[p];
6290d71ae5a4SJacob Faibussowitsch       do {
6291d71ae5a4SJacob Faibussowitsch         p++;
6292d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6293394ed5ebSJunchao Zhang       Bnnz++;
6294394ed5ebSJunchao Zhang     }
6295394ed5ebSJunchao Zhang     k = s;
6296394ed5ebSJunchao Zhang   }
6297394ed5ebSJunchao Zhang 
6298394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6299158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6300158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6301158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6302158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6303394ed5ebSJunchao Zhang 
63046aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6305394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6306394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6307394ed5ebSJunchao Zhang     k   = rowBegin[r];
6308394ed5ebSJunchao Zhang     mid = rowMid[r];
6309394ed5ebSJunchao Zhang     s   = rowEnd[r];
63108e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63118e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6312394ed5ebSJunchao Zhang     Atot += mid - k;
6313394ed5ebSJunchao Zhang     Btot += s - mid;
6314394ed5ebSJunchao Zhang 
6315394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6316394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6317394ed5ebSJunchao Zhang       col = j[p];
6318394ed5ebSJunchao Zhang       q   = p;
6319d71ae5a4SJacob Faibussowitsch       do {
6320d71ae5a4SJacob Faibussowitsch         p++;
6321d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6322394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6323394ed5ebSJunchao Zhang       Annz++;
6324394ed5ebSJunchao Zhang     }
6325394ed5ebSJunchao Zhang 
6326394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6327394ed5ebSJunchao Zhang       col = j[p];
6328394ed5ebSJunchao Zhang       q   = p;
6329d71ae5a4SJacob Faibussowitsch       do {
6330d71ae5a4SJacob Faibussowitsch         p++;
6331d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6332394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6333394ed5ebSJunchao Zhang       Bnnz++;
6334394ed5ebSJunchao Zhang     }
6335394ed5ebSJunchao Zhang   }
6336394ed5ebSJunchao Zhang   /* Output */
6337394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6338394ed5ebSJunchao Zhang   *Annz_  = Annz;
6339394ed5ebSJunchao Zhang   *Atot_  = Atot;
6340394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6341394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6342394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6343394ed5ebSJunchao Zhang   *Btot_  = Btot;
6344394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6346394ed5ebSJunchao Zhang }
6347394ed5ebSJunchao Zhang 
634827430b45SBarry Smith /*
634927430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6350158ec288SJunchao Zhang 
6351158ec288SJunchao Zhang   Input Parameters:
6352158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6353158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6354158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6355651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6356158ec288SJunchao Zhang 
6357158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6358158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6359158ec288SJunchao Zhang 
6360158ec288SJunchao Zhang   Example:
6361158ec288SJunchao Zhang     nnz1 = 4
6362158ec288SJunchao Zhang     nnz  = 6
6363158ec288SJunchao Zhang     imap = [1,3,4,5]
6364158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6365158ec288SJunchao Zhang    then,
6366158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6367158ec288SJunchao Zhang */
6368d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6369d71ae5a4SJacob Faibussowitsch {
6370158ec288SJunchao Zhang   PetscCount k, p;
6371158ec288SJunchao Zhang 
6372158ec288SJunchao Zhang   PetscFunctionBegin;
6373158ec288SJunchao Zhang   jmap_new[0] = 0;
6374158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6375158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6376158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6377158ec288SJunchao Zhang   }
6378158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6380158ec288SJunchao Zhang }
6381158ec288SJunchao Zhang 
63822c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63832c4ab24aSJunchao Zhang {
63842c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63852c4ab24aSJunchao Zhang 
63862c4ab24aSJunchao Zhang   PetscFunctionBegin;
63872c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63882c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63892c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63902c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63912c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63922c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64012c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64022c4ab24aSJunchao Zhang }
64032c4ab24aSJunchao Zhang 
6404d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6405d71ae5a4SJacob Faibussowitsch {
6406394ed5ebSJunchao Zhang   MPI_Comm             comm;
6407394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6408394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6409394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6410394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64112c4ab24aSJunchao Zhang   PetscContainer       container;
64122c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6413394ed5ebSJunchao Zhang 
6414394ed5ebSJunchao Zhang   PetscFunctionBegin;
64159566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6417cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6418eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6419cbc6b225SStefano Zampini #else
64209566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6421cbc6b225SStefano Zampini #endif
64229566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6423cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6424cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6425cbc6b225SStefano Zampini 
64269566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64309566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64339566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64349566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6435394ed5ebSJunchao Zhang 
64366aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6437394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6438394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6439e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6440e8729f6fSJunchao Zhang 
6441e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6442394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6443394ed5ebSJunchao Zhang 
6444394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6445394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6446394ed5ebSJunchao Zhang      will have positive row indices.
6447394ed5ebSJunchao Zhang   */
6448394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6449394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6450394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6451f7d195e4SLawrence Mitchell     else {
6452f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6453f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6454f7d195e4SLawrence Mitchell     }
6455394ed5ebSJunchao Zhang   }
6456394ed5ebSJunchao Zhang 
6457da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64589566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6459651b1cf9SStefano Zampini 
6460651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6461651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64629371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6463651b1cf9SStefano Zampini   PetscInt i1start = k;
6464651b1cf9SStefano Zampini 
64659566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6466394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6467394ed5ebSJunchao Zhang 
6468394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6469394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6470394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6471394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6472394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6473394ed5ebSJunchao Zhang   const PetscInt *ranges;
6474394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6475394ed5ebSJunchao Zhang 
64769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6478394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6479394ed5ebSJunchao Zhang     PetscMPIInt owner;
6480394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6481cbc6b225SStefano Zampini 
6482394ed5ebSJunchao Zhang     /* Locate a row range */
6483394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64849566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6485394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6486394ed5ebSJunchao Zhang 
6487394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64889566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6489394ed5ebSJunchao Zhang 
6490394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6491394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6492394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6493394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6494394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6495cbc6b225SStefano Zampini 
64969566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64979566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64989566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64999566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6500394ed5ebSJunchao Zhang       sendto   = sendto2;
6501394ed5ebSJunchao Zhang       nentries = nentries2;
6502394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6503394ed5ebSJunchao Zhang     }
6504394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6505394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65069566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6507394ed5ebSJunchao Zhang     nsend++;
6508394ed5ebSJunchao Zhang     k = p;
6509394ed5ebSJunchao Zhang   }
6510394ed5ebSJunchao Zhang 
6511394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6512394ed5ebSJunchao Zhang   PetscSF      sf1;
6513394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6514394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6515394ed5ebSJunchao Zhang   PetscInt    *offsets;
6516394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6517394ed5ebSJunchao Zhang 
65189566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6521394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6522394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6523394ed5ebSJunchao Zhang     iremote[k].index = 0;
6524394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
652554c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6526394ed5ebSJunchao Zhang   }
65279566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65289566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65299566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65309566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
653163a3b9bcSJacob Faibussowitsch   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem);
6532394ed5ebSJunchao Zhang 
6533394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6534394ed5ebSJunchao Zhang   PetscSF sf2;
6535394ed5ebSJunchao Zhang   nroots  = nroots2;
6536394ed5ebSJunchao Zhang   nleaves = nleaves2;
65379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6540394ed5ebSJunchao Zhang   p = 0;
6541394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654254c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6543394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6544394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6545394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6546394ed5ebSJunchao Zhang     }
6547394ed5ebSJunchao Zhang   }
65489566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6549394ed5ebSJunchao Zhang 
6550394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6551394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6552394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
65549566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
65559566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE));
65569566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
65579566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE));
6558394ed5ebSJunchao Zhang 
65599566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65609566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6561394ed5ebSJunchao Zhang 
6562394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6563394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65649566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6565394ed5ebSJunchao Zhang 
6566651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6567651b1cf9SStefano Zampini   PetscCount *Cperm1;
6568651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6569651b1cf9SStefano Zampini   PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves));
6570651b1cf9SStefano Zampini 
6571651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6572651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6573651b1cf9SStefano Zampini   PetscBool   hypre;
6574651b1cf9SStefano Zampini   const char *name;
6575651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6576651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6577651b1cf9SStefano Zampini   if (hypre) {
6578651b1cf9SStefano Zampini     PetscInt *minj;
6579651b1cf9SStefano Zampini     PetscBT   hasdiag;
6580651b1cf9SStefano Zampini 
6581651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6582651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6583651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6584651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6585651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6586651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6587651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6588651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6589651b1cf9SStefano Zampini     }
6590651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6591651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6592651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6593651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6594651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6595651b1cf9SStefano Zampini     }
6596651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6597651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6598651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6599651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6600651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6601651b1cf9SStefano Zampini     }
6602651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6603651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6604651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6605651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6606651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6607651b1cf9SStefano Zampini     }
6608651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6609651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6610651b1cf9SStefano Zampini   }
6611651b1cf9SStefano Zampini 
6612651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6613651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6614651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6615651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6616394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6617394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6618394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6619394ed5ebSJunchao Zhang 
6620651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6622651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66239566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6624394ed5ebSJunchao Zhang 
6625394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6626394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6627394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6628394ed5ebSJunchao Zhang 
66299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6633394ed5ebSJunchao Zhang 
6634394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6635158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6636158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6637158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6638158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6639394ed5ebSJunchao Zhang 
66409566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66419566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6642158ec288SJunchao Zhang 
6643158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6644158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6645158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6646158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6647158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6648158ec288SJunchao Zhang 
6649158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6650158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6651158ec288SJunchao Zhang 
6652158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6653158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6654158ec288SJunchao Zhang 
6655158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6656158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6657158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6658158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66599566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66609566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6661e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66629566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6663394ed5ebSJunchao Zhang 
6664158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6665158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6666158ec288SJunchao Zhang 
6667394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6668394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6669394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66719566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66729566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6673394ed5ebSJunchao Zhang     Aj = Aj_new;
6674394ed5ebSJunchao Zhang   }
6675394ed5ebSJunchao Zhang 
6676394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6677394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66789566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66799566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66809566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6681394ed5ebSJunchao Zhang     Bj = Bj_new;
6682394ed5ebSJunchao Zhang   }
6683394ed5ebSJunchao Zhang 
6684cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6685394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6686cbc6b225SStefano Zampini   MatType          rtype;
6687394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6688cf8ba265SJunchao Zhang   PetscObjectState state;
66899566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6691394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66929371c9d4SSatish Balay   if (cstart) {
66939371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66949371c9d4SSatish Balay   }
66959566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mpiaij->A));
66969566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mpiaij->B));
66979566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
66989566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66999566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67009566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67015bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6702cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6703cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6704cbc6b225SStefano Zampini 
6705394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6706394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6707394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6708394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6709394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6710394ed5ebSJunchao Zhang 
6711cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67129566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67139566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67159566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6716cbc6b225SStefano Zampini 
67172c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67182c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67192c4ab24aSJunchao Zhang   coo->n       = coo_n;
67202c4ab24aSJunchao Zhang   coo->sf      = sf2;
67212c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67222c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67232c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67242c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67252c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67262c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67272c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67282c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67292c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67302c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67312c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67322c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67332c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67342c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67352c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67362c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67372c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67382c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67392c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67402c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67412c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67422c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67432c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67442c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67452c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67462c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67472c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67482c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6750394ed5ebSJunchao Zhang }
6751394ed5ebSJunchao Zhang 
6752d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6753d71ae5a4SJacob Faibussowitsch {
6754394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6755394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6756394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67572c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67582c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67592c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67602c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67612c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67622c4ab24aSJunchao Zhang   PetscContainer       container;
67632c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6764394ed5ebSJunchao Zhang 
6765394ed5ebSJunchao Zhang   PetscFunctionBegin;
67662c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67672c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67682c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67692c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67702c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67712c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67722c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67732c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67742c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67752c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67762c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67772c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67782c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67792c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67802c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67812c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67822c4ab24aSJunchao Zhang 
67839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6785394ed5ebSJunchao Zhang 
6786394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67872c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6788394ed5ebSJunchao Zhang 
6789394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67902c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6791394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67922c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6793da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6794158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6795158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6796394ed5ebSJunchao Zhang   }
67972c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6798158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6799158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6800158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6801394ed5ebSJunchao Zhang   }
68022c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6803394ed5ebSJunchao Zhang 
6804394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68052c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6806394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6807394ed5ebSJunchao Zhang   }
68082c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6809394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6810394ed5ebSJunchao Zhang   }
68119566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6814394ed5ebSJunchao Zhang }
6815394ed5ebSJunchao Zhang 
6816ccd8e176SBarry Smith /*MC
6817ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6818ccd8e176SBarry Smith 
6819ccd8e176SBarry Smith    Options Database Keys:
682011a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6821ccd8e176SBarry Smith 
6822ccd8e176SBarry Smith    Level: beginner
68230cd7f59aSBarry Smith 
68240cd7f59aSBarry Smith    Notes:
68252ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68260cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68270cd7f59aSBarry Smith     in the matrix
68280cd7f59aSBarry Smith 
682911a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
683011a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6831ccd8e176SBarry Smith 
68321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6833ccd8e176SBarry Smith M*/
6834d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6835d71ae5a4SJacob Faibussowitsch {
6836ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6837ccd8e176SBarry Smith   PetscMPIInt size;
6838ccd8e176SBarry Smith 
6839ccd8e176SBarry Smith   PetscFunctionBegin;
68409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68412205254eSKarl Rupp 
68424dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6843ccd8e176SBarry Smith   B->data       = (void *)b;
6844aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6845ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6846ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6847ccd8e176SBarry Smith   b->size       = size;
68482205254eSKarl Rupp 
68499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6850ccd8e176SBarry Smith 
6851ccd8e176SBarry Smith   /* build cache for off array entries formed */
68529566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68532205254eSKarl Rupp 
6854ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6855f4259b30SLisandro Dalcin   b->colmap      = NULL;
6856f4259b30SLisandro Dalcin   b->garray      = NULL;
6857ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6858ccd8e176SBarry Smith 
6859ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68600298fd71SBarry Smith   b->lvec  = NULL;
68610298fd71SBarry Smith   b->Mvctx = NULL;
6862ccd8e176SBarry Smith 
6863ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6864f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6865f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6866ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6867ccd8e176SBarry Smith 
6868f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68690298fd71SBarry Smith   b->spptr = NULL;
6870f60c3dc2SHong Zhang 
68719566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68729566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68813d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68833d0639e7SStefano Zampini #endif
6884d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6885d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6886d5e393b6SSuyash Tandon #endif
68873d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68893d0639e7SStefano Zampini #endif
68909779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6892191b95cbSRichard Tran Mills #endif
68939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68975d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68995d7652ecSHong Zhang #endif
6900d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6902d24d4204SJose E. Roman #endif
69039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69053dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69083dad0653Sstefano_zampini #endif
69099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6915ccd8e176SBarry Smith }
691681824310SBarry Smith 
6917cce60c4dSBarry Smith /*@C
691811a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
691903bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
692003bfb495SBarry Smith 
6921d083f849SBarry Smith   Collective
692203bfb495SBarry Smith 
692303bfb495SBarry Smith   Input Parameters:
692403bfb495SBarry Smith + comm - MPI communicator
692511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
692603bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
692711a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
69282ef1f0ffSBarry Smith        calculated if `N` is given) For square matrices `n` is almost always `m`.
69292ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69302ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6931483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
693204ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
693303bfb495SBarry Smith . a    - matrix values
6934483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69352ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
693603bfb495SBarry Smith - oa   - matrix values
693703bfb495SBarry Smith 
693803bfb495SBarry Smith   Output Parameter:
693903bfb495SBarry Smith . mat - the matrix
694003bfb495SBarry Smith 
694103bfb495SBarry Smith   Level: advanced
694203bfb495SBarry Smith 
694303bfb495SBarry Smith   Notes:
69442ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6945292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
694603bfb495SBarry Smith 
69472ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
694803bfb495SBarry Smith 
69492ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
695003bfb495SBarry Smith 
69517b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69527b55108eSBarry Smith 
6953dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6954dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6955dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6956dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
695711a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6958dca341c0SJed Brown   communication if it is known that only local entries will be set.
695903bfb495SBarry Smith 
69601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6961db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69622b26979fSBarry Smith @*/
6963d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6964d71ae5a4SJacob Faibussowitsch {
696503bfb495SBarry Smith   Mat_MPIAIJ *maij;
696603bfb495SBarry Smith 
696703bfb495SBarry Smith   PetscFunctionBegin;
696808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6969aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6970aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69719566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69729566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69739566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
697403bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69752205254eSKarl Rupp 
69768d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
697703bfb495SBarry Smith 
69789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
698003bfb495SBarry Smith 
69819566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69829566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
698303bfb495SBarry Smith 
69849566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69879566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69889566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
699003bfb495SBarry Smith }
699103bfb495SBarry Smith 
69924e84afc0SStefano Zampini typedef struct {
69934e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69944e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69954e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69964e84afc0SStefano Zampini 
69974e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69984e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69994e84afc0SStefano Zampini   PetscScalar *bufa;
70004e84afc0SStefano Zampini   Mat          P_oth;
70014e84afc0SStefano Zampini 
70024e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7003ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70044e84afc0SStefano Zampini 
7005ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70064e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70074e84afc0SStefano Zampini      of the temporary storage */
70084e84afc0SStefano Zampini   PetscBool reusesym;
70094e84afc0SStefano Zampini 
70104e84afc0SStefano Zampini   /* support for COO values insertion */
7011ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7012ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7013ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7014ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7015c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7016c215019aSStefano Zampini   PetscMemType mtype;
70174e84afc0SStefano Zampini 
70184e84afc0SStefano Zampini   /* customization */
70194e84afc0SStefano Zampini   PetscBool abmerge;
7020abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70214e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70224e84afc0SStefano Zampini 
7023ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7024d71ae5a4SJacob Faibussowitsch {
70254e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70264e84afc0SStefano Zampini   PetscInt             i;
70274e84afc0SStefano Zampini 
70284e84afc0SStefano Zampini   PetscFunctionBegin;
70299566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70309566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70319566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70329566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70339566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70349566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70359566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
703648a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70379566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70389566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70399566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70409566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70419566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70429566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70444e84afc0SStefano Zampini }
70454e84afc0SStefano Zampini 
7046fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7047fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7048fff043a9SJunchao Zhang  */
7049d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7050d71ae5a4SJacob Faibussowitsch {
7051c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7052c215019aSStefano Zampini 
7053c215019aSStefano Zampini   PetscFunctionBegin;
70549566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7055c215019aSStefano Zampini   if (f) {
70569566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7057c215019aSStefano Zampini   } else {
7058c215019aSStefano Zampini     const PetscScalar *vv;
7059c215019aSStefano Zampini 
70609566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7061c215019aSStefano Zampini     if (n && idx) {
7062c215019aSStefano Zampini       PetscScalar    *w  = v;
7063c215019aSStefano Zampini       const PetscInt *oi = idx;
7064c215019aSStefano Zampini       PetscInt        j;
7065c215019aSStefano Zampini 
7066c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7067c215019aSStefano Zampini     } else {
70689566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7069c215019aSStefano Zampini     }
70709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7071c215019aSStefano Zampini   }
70723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7073c215019aSStefano Zampini }
7074c215019aSStefano Zampini 
7075d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7076d71ae5a4SJacob Faibussowitsch {
70774e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70784e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70794e84afc0SStefano Zampini 
70804e84afc0SStefano Zampini   PetscFunctionBegin;
70814e84afc0SStefano Zampini   MatCheckProduct(C, 1);
708228b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70834e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70844e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
708548a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
708648a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70874e84afc0SStefano Zampini   }
70884e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7089abb89eb1SStefano Zampini 
7090abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
709108401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70929566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7093abb89eb1SStefano Zampini   }
70944e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70954e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
70964e84afc0SStefano Zampini 
70974e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70984e84afc0SStefano Zampini     if (noff) {
7099c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7100c215019aSStefano Zampini 
71019566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71029566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71034e84afc0SStefano Zampini       n_o += noff;
71044e84afc0SStefano Zampini       n_d += nown;
71054e84afc0SStefano Zampini     } else {
7106c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7107c215019aSStefano Zampini 
71089566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71094e84afc0SStefano Zampini       n_d += mm->nz;
71104e84afc0SStefano Zampini     }
71114e84afc0SStefano Zampini   }
7112c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71139566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71149566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71154e84afc0SStefano Zampini   }
71169566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71184e84afc0SStefano Zampini }
71194e84afc0SStefano Zampini 
71204e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71214e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7122d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7123d71ae5a4SJacob Faibussowitsch {
71244e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7125ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71264e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71274e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71284e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71294e84afc0SStefano Zampini   IS                     glob      = NULL;
71304e84afc0SStefano Zampini   const char            *prefix;
71314e84afc0SStefano Zampini   char                   pprefix[256];
71324e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
713382a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
713482a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7135ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7136ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7137ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7138ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7139ddea5d60SJunchao Zhang 
71404e84afc0SStefano Zampini   MatProductType ptype;
7141d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71424e84afc0SStefano Zampini   PetscMPIInt    size;
71434e84afc0SStefano Zampini 
71444e84afc0SStefano Zampini   PetscFunctionBegin;
71454e84afc0SStefano Zampini   MatCheckProduct(C, 1);
714628b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71474e84afc0SStefano Zampini   ptype = product->type;
7148b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7149fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7150fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7151fa046f9fSJunchao Zhang   }
71524e84afc0SStefano Zampini   switch (ptype) {
71534e84afc0SStefano Zampini   case MATPRODUCT_AB:
71544e84afc0SStefano Zampini     A          = product->A;
71554e84afc0SStefano Zampini     P          = product->B;
71564e84afc0SStefano Zampini     m          = A->rmap->n;
71574e84afc0SStefano Zampini     n          = P->cmap->n;
71584e84afc0SStefano Zampini     M          = A->rmap->N;
71594e84afc0SStefano Zampini     N          = P->cmap->N;
7160ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71614e84afc0SStefano Zampini     break;
71624e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71634e84afc0SStefano Zampini     P          = product->A;
71644e84afc0SStefano Zampini     A          = product->B;
71654e84afc0SStefano Zampini     m          = P->cmap->n;
71664e84afc0SStefano Zampini     n          = A->cmap->n;
71674e84afc0SStefano Zampini     M          = P->cmap->N;
71684e84afc0SStefano Zampini     N          = A->cmap->N;
71694e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71704e84afc0SStefano Zampini     break;
71714e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71724e84afc0SStefano Zampini     A          = product->A;
71734e84afc0SStefano Zampini     P          = product->B;
71744e84afc0SStefano Zampini     m          = P->cmap->n;
71754e84afc0SStefano Zampini     n          = P->cmap->n;
71764e84afc0SStefano Zampini     M          = P->cmap->N;
71774e84afc0SStefano Zampini     N          = P->cmap->N;
71784e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71794e84afc0SStefano Zampini     break;
7180d71ae5a4SJacob Faibussowitsch   default:
7181d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71824e84afc0SStefano Zampini   }
71839566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71844e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71854e84afc0SStefano Zampini 
71864e84afc0SStefano Zampini   /* defaults */
71874e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71884e84afc0SStefano Zampini     mp[i]    = NULL;
71894e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71904e84afc0SStefano Zampini     rmapt[i] = -1;
71914e84afc0SStefano Zampini     cmapt[i] = -1;
71924e84afc0SStefano Zampini     rmapa[i] = NULL;
71934e84afc0SStefano Zampini     cmapa[i] = NULL;
71944e84afc0SStefano Zampini   }
71954e84afc0SStefano Zampini 
71964e84afc0SStefano Zampini   /* customization */
71979566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71984e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71994e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72004e84afc0SStefano Zampini     if (product->api_user) {
7201d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72029566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72039566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7204d0609cedSBarry Smith       PetscOptionsEnd();
72054e84afc0SStefano Zampini     } else {
7206d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72079566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72089566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7209d0609cedSBarry Smith       PetscOptionsEnd();
7210abb89eb1SStefano Zampini     }
7211abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7212abb89eb1SStefano Zampini     if (product->api_user) {
7213d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72149566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7215d0609cedSBarry Smith       PetscOptionsEnd();
7216abb89eb1SStefano Zampini     } else {
7217d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72189566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7219d0609cedSBarry Smith       PetscOptionsEnd();
72204e84afc0SStefano Zampini     }
72214e84afc0SStefano Zampini   }
72224e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72234e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72249566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72279566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72289566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7229ddea5d60SJunchao Zhang 
7230ddea5d60SJunchao Zhang   cp = 0;
72314e84afc0SStefano Zampini   switch (ptype) {
72324e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72339566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72344e84afc0SStefano Zampini 
7235ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7236ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72374e84afc0SStefano Zampini       /* P is product->B */
72389566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72399566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72409566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72419566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72429566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72439566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72449566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72454e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72469566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72479566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72489566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72494e84afc0SStefano Zampini       rmapt[cp] = 1;
72504e84afc0SStefano Zampini       cmapt[cp] = 2;
72514e84afc0SStefano Zampini       cmapa[cp] = globidx;
72524e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72534e84afc0SStefano Zampini       cp++;
7254ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72559566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72569566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72579566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72589566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72599566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72609566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72614e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72629566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72639566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72644e84afc0SStefano Zampini       rmapt[cp] = 1;
72654e84afc0SStefano Zampini       cmapt[cp] = 1;
72664e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72674e84afc0SStefano Zampini       cp++;
72689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72774e84afc0SStefano Zampini       rmapt[cp] = 1;
72784e84afc0SStefano Zampini       cmapt[cp] = 2;
72794e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72804e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72814e84afc0SStefano Zampini       cp++;
72824e84afc0SStefano Zampini     }
7283ddea5d60SJunchao Zhang 
7284ddea5d60SJunchao Zhang     /* A_off * P_other */
72854e84afc0SStefano Zampini     if (mmdata->P_oth) {
72869566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72879566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
72889566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
72899566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72909566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72919566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72929566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72939566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72949566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72959566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72964e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72979566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72989566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72994e84afc0SStefano Zampini       rmapt[cp] = 1;
73004e84afc0SStefano Zampini       cmapt[cp] = 2;
73014e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73024e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73034e84afc0SStefano Zampini       cp++;
73044e84afc0SStefano Zampini     }
73054e84afc0SStefano Zampini     break;
7306ddea5d60SJunchao Zhang 
73074e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73084e84afc0SStefano Zampini     /* A is product->B */
73099566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7310ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73119566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73129566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73139566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73149566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73159566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73169566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73174e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73189566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73199566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73209566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73214e84afc0SStefano Zampini       rmapt[cp] = 2;
73224e84afc0SStefano Zampini       rmapa[cp] = globidx;
73234e84afc0SStefano Zampini       cmapt[cp] = 2;
73244e84afc0SStefano Zampini       cmapa[cp] = globidx;
73254e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73264e84afc0SStefano Zampini       cp++;
73274e84afc0SStefano Zampini     } else {
73289566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73299566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73309566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73319566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73329566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73339566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73344e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73359566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73369566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73379566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73384e84afc0SStefano Zampini       rmapt[cp] = 1;
73394e84afc0SStefano Zampini       cmapt[cp] = 2;
73404e84afc0SStefano Zampini       cmapa[cp] = globidx;
73414e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73424e84afc0SStefano Zampini       cp++;
73439566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73449566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73459566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73469566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73479566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73489566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73494e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73509566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73519566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73524e84afc0SStefano Zampini       rmapt[cp] = 2;
73534e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73544e84afc0SStefano Zampini       cmapt[cp] = 2;
73554e84afc0SStefano Zampini       cmapa[cp] = globidx;
73564e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73574e84afc0SStefano Zampini       cp++;
73584e84afc0SStefano Zampini     }
73594e84afc0SStefano Zampini     break;
73604e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73619566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73624e84afc0SStefano Zampini     /* P is product->B */
73639566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73649566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73659566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73669566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73679566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73689566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73699566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73704e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73719566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73729566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73739566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73744e84afc0SStefano Zampini     rmapt[cp] = 2;
73754e84afc0SStefano Zampini     rmapa[cp] = globidx;
73764e84afc0SStefano Zampini     cmapt[cp] = 2;
73774e84afc0SStefano Zampini     cmapa[cp] = globidx;
73784e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73794e84afc0SStefano Zampini     cp++;
73804e84afc0SStefano Zampini     if (mmdata->P_oth) {
73819566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73829566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
73839566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
73849566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73859566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73869566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73879566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73889566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73899566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73909566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73914e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73929566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73939566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73944e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73954e84afc0SStefano Zampini       cp++;
73969566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73979566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73989566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73999566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74009566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74019566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74024e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74039566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74049566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74054e84afc0SStefano Zampini       rmapt[cp] = 2;
74064e84afc0SStefano Zampini       rmapa[cp] = globidx;
74074e84afc0SStefano Zampini       cmapt[cp] = 2;
74084e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74094e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74104e84afc0SStefano Zampini       cp++;
74114e84afc0SStefano Zampini     }
74124e84afc0SStefano Zampini     break;
7413d71ae5a4SJacob Faibussowitsch   default:
7414d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74154e84afc0SStefano Zampini   }
74164e84afc0SStefano Zampini   /* sanity check */
74179371c9d4SSatish Balay   if (size > 1)
74189371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74194e84afc0SStefano Zampini 
74209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7421ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7422ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7423ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7424ddea5d60SJunchao Zhang   }
74254e84afc0SStefano Zampini   mmdata->cp             = cp;
74264e84afc0SStefano Zampini   C->product->data       = mmdata;
74274e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74284e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74294e84afc0SStefano Zampini 
7430c215019aSStefano Zampini   /* memory type */
7431c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7433d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74349566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7435c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7436d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74373214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7438c215019aSStefano Zampini 
74394e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7440ddea5d60SJunchao Zhang 
7441ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7442ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7443ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7444ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7445ddea5d60SJunchao Zhang   */
74464e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74474e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74484e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7449ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74504e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74514e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74524e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74534e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74544e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74554e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74564e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74574e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7458ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7459ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74604e84afc0SStefano Zampini       }
74614e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74624e84afc0SStefano Zampini   }
7463ddea5d60SJunchao Zhang 
7464ddea5d60SJunchao Zhang   /*
7465ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7466ddea5d60SJunchao Zhang 
7467ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7468ddea5d60SJunchao Zhang 
7469d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7470ddea5d60SJunchao Zhang 
7471ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7472ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7473ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7474ddea5d60SJunchao Zhang 
7475ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7476da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7477ddea5d60SJunchao Zhang   */
74789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7480ddea5d60SJunchao Zhang 
7481ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7482ddea5d60SJunchao Zhang   if (hasoffproc) {
74834e84afc0SStefano Zampini     PetscSF  msf;
74844e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74854e84afc0SStefano Zampini 
74869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7489ddea5d60SJunchao Zhang 
74904e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74914e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74924e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74934e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7494ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74954e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74964e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74974e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74984e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74994e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75004e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75014e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75024e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75034e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75044e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75054e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75064e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75074e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7508ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75094e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75104e84afc0SStefano Zampini               *coi++    = gr;
75114e84afc0SStefano Zampini               *idxoff++ = j;
75124e84afc0SStefano Zampini             }
75134e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75144e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75154e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75164e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75174e84afc0SStefano Zampini             } else { /* offdiag */
75184e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75194e84afc0SStefano Zampini             }
75204e84afc0SStefano Zampini             ncoo_o += nz;
7521ddea5d60SJunchao Zhang           } else { /* this is a local row */
75224e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75234e84afc0SStefano Zampini           }
75244e84afc0SStefano Zampini         }
75254e84afc0SStefano Zampini       }
75264e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75274e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75284e84afc0SStefano Zampini     }
75294e84afc0SStefano Zampini 
75309566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75319566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75329566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75339566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75344e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75369566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75379566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75389566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75399566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75409566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7541ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75429566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75434e84afc0SStefano Zampini     coo_i = coo_i2;
75444e84afc0SStefano Zampini     coo_j = coo_j2;
75454e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75464e84afc0SStefano Zampini     ncoo = ncoo_d;
75479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7548c215019aSStefano Zampini 
75499566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75509566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75519566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75524e84afc0SStefano Zampini   }
7553c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75544e84afc0SStefano Zampini 
7555ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75564e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75574e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75584e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75594e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75604e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75614e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75624e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75634e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75644e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75654e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75664e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75674e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75684e84afc0SStefano Zampini 
75694e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7570ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7571ddea5d60SJunchao Zhang       /* fill coo_i */
75724e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75734e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75744e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75754e84afc0SStefano Zampini       }
7576ddea5d60SJunchao Zhang       /* fill coo_j */
7577ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75789566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7579ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7580ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7581ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75824e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75834e84afc0SStefano Zampini       }
75844e84afc0SStefano Zampini       ncoo_d += mm->nz;
7585ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75864e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75874e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75884e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75894e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7590ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75914e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7592ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75934e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75944e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75954e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7596ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75974e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75984e84afc0SStefano Zampini           }
75994e84afc0SStefano Zampini           ncoo_d += nz;
76004e84afc0SStefano Zampini         }
76014e84afc0SStefano Zampini       }
76024e84afc0SStefano Zampini     }
76034e84afc0SStefano Zampini   }
760448a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76059566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
760648a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76079566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7608ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76099566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76104e84afc0SStefano Zampini 
76114e84afc0SStefano Zampini   /* preallocate with COO data */
76129566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76139566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76154e84afc0SStefano Zampini }
76164e84afc0SStefano Zampini 
7617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7618d71ae5a4SJacob Faibussowitsch {
76194e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76204e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76214e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7622abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76234e84afc0SStefano Zampini #else
76244e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76254e84afc0SStefano Zampini #endif
76264e84afc0SStefano Zampini 
76274e84afc0SStefano Zampini   PetscFunctionBegin;
76284e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76294e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
763048a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
763165e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7632abb89eb1SStefano Zampini     switch (product->type) {
7633abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7634abb89eb1SStefano Zampini       if (product->api_user) {
7635d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76369566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7637d0609cedSBarry Smith         PetscOptionsEnd();
7638abb89eb1SStefano Zampini       } else {
7639d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76409566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7641d0609cedSBarry Smith         PetscOptionsEnd();
7642abb89eb1SStefano Zampini       }
7643abb89eb1SStefano Zampini       break;
7644abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7645abb89eb1SStefano Zampini       if (product->api_user) {
7646d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76479566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7648d0609cedSBarry Smith         PetscOptionsEnd();
7649abb89eb1SStefano Zampini       } else {
7650d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76519566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7652d0609cedSBarry Smith         PetscOptionsEnd();
7653abb89eb1SStefano Zampini       }
7654abb89eb1SStefano Zampini       break;
7655abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7656abb89eb1SStefano Zampini       if (product->api_user) {
7657d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76589566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7659d0609cedSBarry Smith         PetscOptionsEnd();
7660abb89eb1SStefano Zampini       } else {
7661d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76629566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7663d0609cedSBarry Smith         PetscOptionsEnd();
7664abb89eb1SStefano Zampini       }
7665abb89eb1SStefano Zampini       break;
7666d71ae5a4SJacob Faibussowitsch     default:
7667d71ae5a4SJacob Faibussowitsch       break;
7668abb89eb1SStefano Zampini     }
7669abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7670abb89eb1SStefano Zampini   }
76714e84afc0SStefano Zampini #endif
76724e84afc0SStefano Zampini   if (match) {
76734e84afc0SStefano Zampini     switch (product->type) {
76744e84afc0SStefano Zampini     case MATPRODUCT_AB:
76754e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7676d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7677d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7678d71ae5a4SJacob Faibussowitsch       break;
7679d71ae5a4SJacob Faibussowitsch     default:
7680d71ae5a4SJacob Faibussowitsch       break;
76814e84afc0SStefano Zampini     }
76824e84afc0SStefano Zampini   }
76834e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76849566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768681824310SBarry Smith }
768798921bdaSJacob Faibussowitsch 
768898921bdaSJacob Faibussowitsch /*
768972833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
769072833a62Smarkadams4 
769172833a62Smarkadams4    n - the number of block indices in cc[]
769272833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
769372833a62Smarkadams4 */
7694d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7695d71ae5a4SJacob Faibussowitsch {
769672833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
769772833a62Smarkadams4   const PetscInt *idx;
769872833a62Smarkadams4 
769972833a62Smarkadams4   PetscFunctionBegin;
770072833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
770172833a62Smarkadams4   if (nidx) {
770272833a62Smarkadams4     cnt     = 0;
770372833a62Smarkadams4     cc[cnt] = idx[0] / bs;
770472833a62Smarkadams4     for (j = 1; j < nidx; j++) {
770572833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
770672833a62Smarkadams4     }
770772833a62Smarkadams4   }
770872833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
770972833a62Smarkadams4   *n = cnt + 1;
77103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771172833a62Smarkadams4 }
771272833a62Smarkadams4 
771372833a62Smarkadams4 /*
771472833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
771572833a62Smarkadams4 
771672833a62Smarkadams4     ncollapsed - the number of block indices
771772833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
771872833a62Smarkadams4 */
7719d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7720d71ae5a4SJacob Faibussowitsch {
772172833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
772272833a62Smarkadams4 
772372833a62Smarkadams4   PetscFunctionBegin;
772472833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
772572833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
772672833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
772772833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77289371c9d4SSatish Balay     cprevtmp = cprev;
77299371c9d4SSatish Balay     cprev    = merged;
77309371c9d4SSatish Balay     merged   = cprevtmp;
773172833a62Smarkadams4   }
773272833a62Smarkadams4   *ncollapsed = nprev;
773372833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773572833a62Smarkadams4 }
773672833a62Smarkadams4 
77372d776b49SBarry Smith /*
773872833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
773972833a62Smarkadams4 
774072833a62Smarkadams4  Input Parameter:
774172833a62Smarkadams4  . Amat - matrix
774272833a62Smarkadams4  - symmetrize - make the result symmetric
774372833a62Smarkadams4  + scale - scale with diagonal
774472833a62Smarkadams4 
774572833a62Smarkadams4  Output Parameter:
774672833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
774772833a62Smarkadams4 
774872833a62Smarkadams4 */
7749e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7750d71ae5a4SJacob Faibussowitsch {
775172833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
775272833a62Smarkadams4   MPI_Comm  comm;
775372833a62Smarkadams4   Mat       Gmat;
775472833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
775572833a62Smarkadams4   Mat       a, b, c;
775672833a62Smarkadams4   MatType   jtype;
775772833a62Smarkadams4 
775872833a62Smarkadams4   PetscFunctionBegin;
775972833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
776072833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
776172833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
776272833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
776372833a62Smarkadams4   nloc = (Iend - Istart) / bs;
776472833a62Smarkadams4 
776572833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
776672833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
776772833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
776872833a62Smarkadams4 
776972833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
777072833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
777172833a62Smarkadams4      implementation */
777272833a62Smarkadams4   if (bs > 1) {
777372833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
777472833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
777572833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
777672833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
777772833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
777872833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
777972833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77802cf69117Smarkadams4       MatScalar *aa, val, *AA;
77812cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77829371c9d4SSatish Balay       if (isseqaij) {
77839371c9d4SSatish Balay         a = Amat;
77849371c9d4SSatish Balay         b = NULL;
77859371c9d4SSatish Balay       } else {
778672833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77879371c9d4SSatish Balay         a             = d->A;
77889371c9d4SSatish Balay         b             = d->B;
778972833a62Smarkadams4       }
779072833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
779172833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
779272833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77932cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
779459ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
779559ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
779659ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
779759ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
779859ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
779972833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
780059ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
780159ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
780259ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
780359ee9f9fSPierre Jolivet             else {
780459ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
780559ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
780659ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
780772833a62Smarkadams4               }
780859ee9f9fSPierre Jolivet             }
780959ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
781059ee9f9fSPierre Jolivet           }
781159ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
781272833a62Smarkadams4           if (!ok) {
781372833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
781459ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
781572833a62Smarkadams4             goto old_bs;
781672833a62Smarkadams4           }
781772833a62Smarkadams4         }
781872833a62Smarkadams4       }
781972833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
782072833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
782172833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78222cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
782372833a62Smarkadams4       // diag
782472833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
782572833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
782672833a62Smarkadams4         ai               = aseq->i;
782772833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
782872833a62Smarkadams4         aj               = aseq->j + ai[brow];
782972833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
783072833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
783172833a62Smarkadams4           val        = 0;
7832e02fb3cdSMark Adams           if (index_size == 0) {
783372833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
783472833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
783572833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
783672833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
783772833a62Smarkadams4               }
783872833a62Smarkadams4             }
7839e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7840e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7841e02fb3cdSMark Adams               int ii = index[iii];
7842e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7843e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7844e02fb3cdSMark Adams                 int jj = index[jjj];
7845cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7846e02fb3cdSMark Adams               }
7847e02fb3cdSMark Adams             }
7848e02fb3cdSMark Adams           }
784959ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
785072833a62Smarkadams4           AA[k / bs] = val;
785172833a62Smarkadams4         }
785272833a62Smarkadams4         grow = Istart / bs + brow / bs;
785372833a62Smarkadams4         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES));
785472833a62Smarkadams4       }
785572833a62Smarkadams4       // off-diag
785672833a62Smarkadams4       if (ismpiaij) {
785772833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
785872833a62Smarkadams4         const PetscScalar *vals;
785972833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
786072833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
786172833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
786272833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
786372833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
786459ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
786572833a62Smarkadams4             AA[k / bs] = 0;
786672833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
786772833a62Smarkadams4           }
786872833a62Smarkadams4           nc = ncols / bs;
786972833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7870e02fb3cdSMark Adams           if (index_size == 0) {
787172833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
787272833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
787372833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
787472833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
787559ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
787672833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
787772833a62Smarkadams4                 }
787872833a62Smarkadams4               }
787972833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
788072833a62Smarkadams4             }
7881e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7882e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7883e02fb3cdSMark Adams               int ii = index[iii];
7884e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7885e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7886e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7887e02fb3cdSMark Adams                   int jj = index[jjj];
7888e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7889e02fb3cdSMark Adams                 }
7890e02fb3cdSMark Adams               }
7891e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7892e02fb3cdSMark Adams             }
7893e02fb3cdSMark Adams           }
789472833a62Smarkadams4           grow = Istart / bs + brow / bs;
789572833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES));
789672833a62Smarkadams4         }
789772833a62Smarkadams4       }
789872833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
789972833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79002cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
790172833a62Smarkadams4     } else {
790272833a62Smarkadams4       const PetscScalar *vals;
790372833a62Smarkadams4       const PetscInt    *idx;
790472833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
790572833a62Smarkadams4     old_bs:
790672833a62Smarkadams4       /*
790772833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
790872833a62Smarkadams4        */
790972833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
791072833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
791172833a62Smarkadams4       if (isseqaij) {
791272833a62Smarkadams4         PetscInt max_d_nnz;
791372833a62Smarkadams4         /*
791472833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
791572833a62Smarkadams4          */
791672833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
791772833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
791872833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
791948a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792072833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792172833a62Smarkadams4       } else if (ismpiaij) {
792272833a62Smarkadams4         Mat             Daij, Oaij;
792372833a62Smarkadams4         const PetscInt *garray;
792472833a62Smarkadams4         PetscInt        max_d_nnz;
792572833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
792672833a62Smarkadams4         /*
792772833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
792872833a62Smarkadams4          */
792972833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
793072833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793172833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793248a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793372833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793472833a62Smarkadams4         /*
793572833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
793672833a62Smarkadams4          */
793772833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
793872833a62Smarkadams4           o_nnz[jj] = 0;
793972833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
794072833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794172833a62Smarkadams4             o_nnz[jj] += ncols;
794272833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794372833a62Smarkadams4           }
794472833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
794572833a62Smarkadams4         }
794672833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
794772833a62Smarkadams4       /* get scalar copy (norms) of matrix */
794872833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
794972833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
795072833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
795172833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
795272833a62Smarkadams4         PetscInt dest_row = Ii / bs;
795372833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
795472833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
795572833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
795672833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
795772833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
795872833a62Smarkadams4         }
795972833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
796072833a62Smarkadams4       }
796172833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
796272833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
796372833a62Smarkadams4     }
796472833a62Smarkadams4   } else {
79652d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79662d776b49SBarry Smith     else {
79672d776b49SBarry Smith       Gmat = Amat;
79682d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79692d776b49SBarry Smith     }
79709371c9d4SSatish Balay     if (isseqaij) {
79719371c9d4SSatish Balay       a = Gmat;
79729371c9d4SSatish Balay       b = NULL;
79739371c9d4SSatish Balay     } else {
797472833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79759371c9d4SSatish Balay       a             = d->A;
79769371c9d4SSatish Balay       b             = d->B;
797772833a62Smarkadams4     }
79782d776b49SBarry Smith     if (filter >= 0 || scale) {
79792d776b49SBarry Smith       /* take absolute value of each entry */
798072833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
798172833a62Smarkadams4         MatInfo      info;
798272833a62Smarkadams4         PetscScalar *avals;
798372833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
798472833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
798572833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
798672833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
798772833a62Smarkadams4       }
798872833a62Smarkadams4     }
79892d776b49SBarry Smith   }
799072833a62Smarkadams4   if (symmetrize) {
7991b94d7dedSBarry Smith     PetscBool isset, issym;
7992b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
7993b94d7dedSBarry Smith     if (!isset || !issym) {
799472833a62Smarkadams4       Mat matTrans;
799572833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
79961fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
799772833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
799872833a62Smarkadams4     }
799972833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80002d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
800172833a62Smarkadams4   if (scale) {
800272833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
800372833a62Smarkadams4     Vec diag;
800472833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
800572833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
800672833a62Smarkadams4     PetscCall(VecReciprocal(diag));
800772833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
800872833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
800972833a62Smarkadams4     PetscCall(VecDestroy(&diag));
801072833a62Smarkadams4   }
801172833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80122d776b49SBarry Smith 
80132d776b49SBarry Smith   if (filter >= 0) {
80142ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80152ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80162d776b49SBarry Smith   }
801772833a62Smarkadams4   *a_Gmat = Gmat;
80183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
801972833a62Smarkadams4 }
802072833a62Smarkadams4 
802172833a62Smarkadams4 /*
802298921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
802398921bdaSJacob Faibussowitsch */
802498921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h>
802598921bdaSJacob Faibussowitsch 
802698921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80279566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80289566063dSJacob Faibussowitsch #undef PetscCall
80299371c9d4SSatish Balay #define PetscCall(...) \
80309371c9d4SSatish Balay   do { \
80315f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
803298921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
803398921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
803498921bdaSJacob Faibussowitsch       return; \
803598921bdaSJacob Faibussowitsch     } \
803698921bdaSJacob Faibussowitsch   } while (0)
803798921bdaSJacob Faibussowitsch 
803898921bdaSJacob Faibussowitsch #undef SETERRQ
80399371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80409371c9d4SSatish Balay   do { \
804198921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
804298921bdaSJacob Faibussowitsch     return; \
804398921bdaSJacob Faibussowitsch   } while (0)
804498921bdaSJacob Faibussowitsch 
804598921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
804698921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
804798921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
804898921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
804998921bdaSJacob Faibussowitsch #else
805098921bdaSJacob Faibussowitsch #endif
8051d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8052d71ae5a4SJacob Faibussowitsch {
805398921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
805498921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
805598921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
805698921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
805798921bdaSJacob Faibussowitsch   PetscScalar value;
805898921bdaSJacob Faibussowitsch 
805998921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
806098921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80615f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
806298921bdaSJacob Faibussowitsch   {
806398921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
806498921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
806598921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
806698921bdaSJacob Faibussowitsch 
806798921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
806898921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
806998921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
807098921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
807198921bdaSJacob Faibussowitsch     MatScalar  *aa;
807298921bdaSJacob Faibussowitsch     PetscBool   ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
807398921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
807498921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
807598921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
807698921bdaSJacob Faibussowitsch     MatScalar  *ba;
807798921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
807898921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
807998921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
808098921bdaSJacob Faibussowitsch 
808198921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
808298921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
808398921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
808498921bdaSJacob Faibussowitsch 
808598921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80879566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
808898921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
808998921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
80906bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
809198921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
809298921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
809398921bdaSJacob Faibussowitsch         lastcol1 = -1;
809498921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
809598921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
809698921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
809798921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
809898921bdaSJacob Faibussowitsch         low1     = 0;
809998921bdaSJacob Faibussowitsch         high1    = nrow1;
810098921bdaSJacob Faibussowitsch         lastcol2 = -1;
810198921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
810298921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
810398921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
810498921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
810598921bdaSJacob Faibussowitsch         low2     = 0;
810698921bdaSJacob Faibussowitsch         high2    = nrow2;
810798921bdaSJacob Faibussowitsch 
810898921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
810998921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
811098921bdaSJacob Faibussowitsch           else value = v[i + j * m];
811198921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
811298921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
811398921bdaSJacob Faibussowitsch             col = in[j] - cstart;
811498921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
811598921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
811698921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
811763a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
811898921bdaSJacob Faibussowitsch           } else {
811998921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
812048a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
812198921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8122eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
812398921bdaSJacob Faibussowitsch               col--;
812498921bdaSJacob Faibussowitsch #else
812598921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
812698921bdaSJacob Faibussowitsch #endif
812798921bdaSJacob Faibussowitsch               if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
81289566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
812998921bdaSJacob Faibussowitsch                 col = in[j];
813098921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
813198921bdaSJacob Faibussowitsch                 B        = aij->B;
813298921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81339371c9d4SSatish Balay                 bimax    = b->imax;
81349371c9d4SSatish Balay                 bi       = b->i;
81359371c9d4SSatish Balay                 bilen    = b->ilen;
81369371c9d4SSatish Balay                 bj       = b->j;
813798921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
813898921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
813998921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
814098921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
814198921bdaSJacob Faibussowitsch                 low2     = 0;
814298921bdaSJacob Faibussowitsch                 high2    = nrow2;
814398921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
814498921bdaSJacob Faibussowitsch                 ba       = b->a;
814598921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
814698921bdaSJacob Faibussowitsch               }
814798921bdaSJacob Faibussowitsch             } else col = in[j];
814898921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
814998921bdaSJacob Faibussowitsch           }
815098921bdaSJacob Faibussowitsch         }
815198921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
815298921bdaSJacob Faibussowitsch         if (roworiented) {
81539566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
815498921bdaSJacob Faibussowitsch         } else {
81559566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
815698921bdaSJacob Faibussowitsch         }
815798921bdaSJacob Faibussowitsch       }
815898921bdaSJacob Faibussowitsch     }
81599566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81609566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
816198921bdaSJacob Faibussowitsch   }
816298921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
816398921bdaSJacob Faibussowitsch }
816472833a62Smarkadams4 
816598921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
816698921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
816798921bdaSJacob Faibussowitsch  * original definitions */
81689566063dSJacob Faibussowitsch #undef PetscCall
816998921bdaSJacob Faibussowitsch #undef SETERRQ
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