1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4179680b7ceSStefano Zampini /* Not sure LogFlops will slow down the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780c0edf612SJunchao Zhang PetscBool all_assembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823c0edf612SJunchao Zhang PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 824c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266*9f196a02SMartin Diehl PetscBool isdraw, isascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 1272*9f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1274*9f196a02SMartin Diehl if (isascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1335*9f196a02SMartin Diehl } else if (isascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389*9f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 1392*9f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 1396*9f196a02SMartin Diehl if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 27888bb0f5c6SPierre Jolivet /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 27928bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIAIJ, 27938bb0f5c6SPierre Jolivet /*69*/ MatGetRowMinAbs_MPIAIJ, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 27968bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, 2797b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2798f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 27998bb0f5c6SPierre Jolivet /*75*/ NULL, 28008bb0f5c6SPierre Jolivet NULL, 28018bb0f5c6SPierre Jolivet NULL, 28028bb0f5c6SPierre Jolivet MatLoad_MPIAIJ, 28038bb0f5c6SPierre Jolivet NULL, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28078bb0f5c6SPierre Jolivet /*83*/ NULL, 2808f4259b30SLisandro Dalcin NULL, 280926be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 28108bb0f5c6SPierre Jolivet MatPtAPNumeric_MPIAIJ_MPIAIJ, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 28138bb0f5c6SPierre Jolivet /*89*/ MatBindToCPU_MPIAIJ, 28148bb0f5c6SPierre Jolivet MatProductSetFromOptions_MPIAIJ, 2815f4259b30SLisandro Dalcin NULL, 2816f4259b30SLisandro Dalcin NULL, 28172fd7e33dSBarry Smith MatConjugate_MPIAIJ, 28188bb0f5c6SPierre Jolivet /*94*/ NULL, 28198bb0f5c6SPierre Jolivet MatSetValuesRow_MPIAIJ, 282099cafbc1SBarry Smith MatRealPart_MPIAIJ, 282169db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2822f4259b30SLisandro Dalcin NULL, 28238bb0f5c6SPierre Jolivet /*99*/ NULL, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28265494a064SHong Zhang MatGetRowMin_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 28288bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPIAIJ, 28298bb0f5c6SPierre Jolivet MatGetSeqNonzeroStructure_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2832f4259b30SLisandro Dalcin NULL, 28338bb0f5c6SPierre Jolivet /*109*/ NULL, 28348bb0f5c6SPierre Jolivet MatMultDiagonalBlock_MPIAIJ, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin NULL, 2837f4259b30SLisandro Dalcin NULL, 28388bb0f5c6SPierre Jolivet /*114*/ MatGetMultiProcBlock_MPIAIJ, 28398bb0f5c6SPierre Jolivet MatFindNonzeroRows_MPIAIJ, 2840a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2841bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2842a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28438bb0f5c6SPierre Jolivet /*119*/ MatCreateSubMatricesMPI_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2847f4259b30SLisandro Dalcin NULL, 28488bb0f5c6SPierre Jolivet /*124*/ NULL, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 28518bb0f5c6SPierre Jolivet MatSetBlockSizes_MPIAIJ, 2852f4259b30SLisandro Dalcin NULL, 28538bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 2854a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28554222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2856f4259b30SLisandro Dalcin NULL, 285772833a62Smarkadams4 NULL, 28588bb0f5c6SPierre Jolivet /*134*/ NULL, 285972833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28602d776b49SBarry Smith NULL, 2861eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28624cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 28638bb0f5c6SPierre Jolivet /*139*/ NULL, 286442ce410bSJunchao Zhang NULL, 286542ce410bSJunchao Zhang NULL, 286603db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 286703db1824SAlex Lindsay MatGetCurrentMemType_MPIAIJ}; 286836ce4990SBarry Smith 2869ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2870d71ae5a4SJacob Faibussowitsch { 28712e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28722e8a6d31SBarry Smith 28732e8a6d31SBarry Smith PetscFunctionBegin; 28749566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28759566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28772e8a6d31SBarry Smith } 28782e8a6d31SBarry Smith 2879ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2880d71ae5a4SJacob Faibussowitsch { 28812e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28822e8a6d31SBarry Smith 28832e8a6d31SBarry Smith PetscFunctionBegin; 28849566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28859566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28872e8a6d31SBarry Smith } 28888a729477SBarry Smith 2889d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2890d71ae5a4SJacob Faibussowitsch { 2891ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28925d2a9ed1SStefano Zampini PetscMPIInt size; 2893a23d5eceSKris Buschelman 2894a23d5eceSKris Buschelman PetscFunctionBegin; 2895ad79cf63SBarry Smith if (B->hash_active) { 2896aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2897ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2898ad79cf63SBarry Smith } 28999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2901899cda47SBarry Smith 2902cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2903eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2904cb7b82ddSBarry Smith #else 29059566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2906cb7b82ddSBarry Smith #endif 29079566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29089566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29099566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2910cb7b82ddSBarry Smith 29119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2912c508b908SBarry Smith 2913c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29159566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29189566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2919c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2920cb7b82ddSBarry Smith 2921c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2922ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29239566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29269566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2927c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2928899cda47SBarry Smith 29299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2931526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2932cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293315001458SStefano Zampini B->assembled = PETSC_FALSE; 29343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2935a23d5eceSKris Buschelman } 2936a23d5eceSKris Buschelman 2937ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2938d71ae5a4SJacob Faibussowitsch { 2939ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29404c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2941846b4da1SFande Kong 2942846b4da1SFande Kong PetscFunctionBegin; 2943846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29444c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29454c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29464c51d546SAlexander 29474c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29484c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29494c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 29504c51d546SAlexander PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29514c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29524c51d546SAlexander 29539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29554c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29564c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29579566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2958846b4da1SFande Kong 2959846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2960846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2961846b4da1SFande Kong B->assembled = PETSC_FALSE; 2962b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2963b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2965846b4da1SFande Kong } 2966846b4da1SFande Kong 2967d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2968d71ae5a4SJacob Faibussowitsch { 2969d6dfbf8fSBarry Smith Mat mat; 2970416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2971d6dfbf8fSBarry Smith 29723a40ed3dSBarry Smith PetscFunctionBegin; 2973f4259b30SLisandro Dalcin *newmat = NULL; 29749566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29779566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2978273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2979e1b6402fSHong Zhang 2980d5f3da31SBarry Smith mat->factortype = matin->factortype; 2981501880eeSStefano Zampini mat->assembled = matin->assembled; 2982e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2983d6dfbf8fSBarry Smith 298417699dbbSLois Curfman McInnes a->size = oldmat->size; 298517699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2986e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2987e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2988501880eeSStefano Zampini a->rowindices = NULL; 2989501880eeSStefano Zampini a->rowvalues = NULL; 2990bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2991d6dfbf8fSBarry Smith 29929566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29939566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2994420957c1SBarry Smith if (matin->hash_active) { 2995420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2996420957c1SBarry Smith } else { 2997420957c1SBarry Smith mat->preallocated = matin->preallocated; 29982ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2999aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3000eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3001b1fc9764SSatish Balay #else 30029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3004b1fc9764SSatish Balay #endif 3005501880eeSStefano Zampini } else a->colmap = NULL; 30063f41c07dSBarry Smith if (oldmat->garray) { 3007b1d57f15SBarry Smith PetscInt len; 3008d0f46423SBarry Smith len = oldmat->B->cmap->n; 30099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30109566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3011501880eeSStefano Zampini } else a->garray = NULL; 3012d6dfbf8fSBarry Smith 30130de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30140de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30150de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3016aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3017cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3018cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3019cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3020cff58d65SJunchao Zhang } 30219566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30229566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3023420957c1SBarry Smith } 30249566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30258a729477SBarry Smith *newmat = mat; 30263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30278a729477SBarry Smith } 3028416022c9SBarry Smith 3029d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3030d71ae5a4SJacob Faibussowitsch { 303152f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303252f91c60SVaclav Hapla 303352f91c60SVaclav Hapla PetscFunctionBegin; 303452f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303552f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3036c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30379566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 304052f91c60SVaclav Hapla if (isbinary) { 30419566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304252f91c60SVaclav Hapla } else if (ishdf5) { 304352f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30449566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304552f91c60SVaclav Hapla #else 304652f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304752f91c60SVaclav Hapla #endif 304852f91c60SVaclav Hapla } else { 304998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 305052f91c60SVaclav Hapla } 30513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305252f91c60SVaclav Hapla } 305352f91c60SVaclav Hapla 3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3055d71ae5a4SJacob Faibussowitsch { 30563ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30573ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30583ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30598fb81238SShri Abhyankar 30608fb81238SShri Abhyankar PetscFunctionBegin; 30619566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30628fb81238SShri Abhyankar 30633ea6fe3dSLisandro Dalcin /* read in matrix header */ 30649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306508401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30669371c9d4SSatish Balay M = header[1]; 30679371c9d4SSatish Balay N = header[2]; 30689371c9d4SSatish Balay nz = header[3]; 306908401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 307008401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307108401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307208ea439dSMark F. Adams 30733ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30749566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30753ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30763ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30773ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30808fb81238SShri Abhyankar 30813ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30829566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3083aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30848fb81238SShri Abhyankar 30853ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30889566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30899371c9d4SSatish Balay rowidxs[0] = 0; 30909371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30911690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3092462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309308401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309438b83642SBarry Smith } 309538b83642SBarry Smith 30963ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30989566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31003ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31019566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31029566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31039566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31058fb81238SShri Abhyankar } 31068fb81238SShri Abhyankar 31073782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3108ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3109d71ae5a4SJacob Faibussowitsch { 31104aa3045dSJed Brown IS iscol_local; 3111c5e4d11fSDmitry Karpeev PetscBool isstride; 31129725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31133782ecc7SHong Zhang 31143782ecc7SHong Zhang PetscFunctionBegin; 31153782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31173782ecc7SHong Zhang 3118c5e4d11fSDmitry Karpeev if (isstride) { 3119c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31209566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31239725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3124c5e4d11fSDmitry Karpeev } 31253782ecc7SHong Zhang 31269725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3127c5e4d11fSDmitry Karpeev if (gisstride) { 3128c5e4d11fSDmitry Karpeev PetscInt N; 31299566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31309566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31329566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3133c5e4d11fSDmitry Karpeev } else { 3134c5bfad50SMark F. Adams PetscInt cbs; 31359566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31369566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31379566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3138b79d0421SJed Brown } 31393782ecc7SHong Zhang 31403782ecc7SHong Zhang *isseq = iscol_local; 31413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3142c5e4d11fSDmitry Karpeev } 31438d2139bdSHong Zhang 3144ddfdf956SHong Zhang /* 31459c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31469c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3147ddfdf956SHong Zhang 3148ddfdf956SHong Zhang Input Parameters: 314927430b45SBarry Smith + mat - matrix 315027430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31519c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315227430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3153ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315427430b45SBarry Smith 315527430b45SBarry Smith Output Parameters: 315627430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315727430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315827430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315927430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3160ddfdf956SHong Zhang */ 3161835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3162d71ae5a4SJacob Faibussowitsch { 3163040216a4SHong Zhang Vec x, cmap; 3164040216a4SHong Zhang const PetscInt *is_idx; 3165040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31669c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3167040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3168040216a4SHong Zhang Mat B = a->B; 3169040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3170a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31718b3fa1f7SHong Zhang MPI_Comm comm; 31723a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31733782ecc7SHong Zhang 31743782ecc7SHong Zhang PetscFunctionBegin; 31759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31778b3fa1f7SHong Zhang 3178ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31799566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31809566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31819566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31829566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31830a351717SHong Zhang 31849c988bcaSHong Zhang /* Get start indices */ 31859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3186ddfdf956SHong Zhang isstart -= ncols; 31879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3188040216a4SHong Zhang 31899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31909566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31919566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3193ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31948b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3195ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31969c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31978b3fa1f7SHong Zhang } 31989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32009566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32018b3fa1f7SHong Zhang 32029c988bcaSHong Zhang /* Get iscol_d */ 32039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32049566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32059566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3206feb78a15SHong Zhang 32079c988bcaSHong Zhang /* Get isrow_d */ 32089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3209feb78a15SHong Zhang rstart = mat->rmap->rstart; 32109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32129c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3214feb78a15SHong Zhang 32159566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32169566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32179566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3218feb78a15SHong Zhang 32199c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3222ddfdf956SHong Zhang 32239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322407250d77SHong Zhang 32259566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32269566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322764efcef9SHong Zhang 32289c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3229ddfdf956SHong Zhang /* off-process column indices */ 32309c988bcaSHong Zhang count = 0; 32319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3233feb78a15SHong Zhang 32349566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32359566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32368b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3237f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32389c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32391c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32401c645242SHong Zhang count++; 32418b3fa1f7SHong Zhang } 32428b3fa1f7SHong Zhang } 32439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324507250d77SHong Zhang 32469566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3247b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3248b6d9b4e0SHong Zhang 32499566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32509c988bcaSHong Zhang *garray = cmap1; 32519c988bcaSHong Zhang 32529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3256040216a4SHong Zhang } 3257040216a4SHong Zhang 3258b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3260d71ae5a4SJacob Faibussowitsch { 3261b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32621fd43edeSHong Zhang Mat M = NULL; 32633b00a383SHong Zhang MPI_Comm comm; 3264b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32653b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3266c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32673b00a383SHong Zhang 32683b00a383SHong Zhang PetscFunctionBegin; 32699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32703b00a383SHong Zhang 32713b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3272b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327428b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32753b00a383SHong Zhang 32769566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327728b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32783b00a383SHong Zhang 32799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 328028b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32813b00a383SHong Zhang 3282b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3283b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328648a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32893b00a383SHong Zhang 32903b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3291c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3292b20e2604SHong Zhang PetscInt BsubN; 32933b00a383SHong Zhang 3294b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32959566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32963b00a383SHong Zhang 3297b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32999566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33003b00a383SHong Zhang 3301c0c276a7Ssdargavi // Compact garray so its not of size Bn 3302c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3303c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3304c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3305c0c276a7Ssdargavi 33069c988bcaSHong Zhang /* Create submatrix M */ 3307c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3308c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3309c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33103b00a383SHong Zhang 3311b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3312b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33137cfce09cSHong Zhang 33149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3315b20e2604SHong Zhang n = asub->B->cmap->N; 3316b20e2604SHong Zhang if (BsubN > n) { 3317c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33187cfce09cSHong Zhang const PetscInt *idx; 33199c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33209566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33217cfce09cSHong Zhang 33229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33237cfce09cSHong Zhang j = 0; 33249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3325b20e2604SHong Zhang for (i = 0; i < n; i++) { 33267cfce09cSHong Zhang if (j >= BsubN) break; 33279c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33287cfce09cSHong Zhang 33299c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33307cfce09cSHong Zhang idx_new[i] = idx[j++]; 333198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33327cfce09cSHong Zhang } 33339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33347cfce09cSHong Zhang 33359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33369566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33377cfce09cSHong Zhang 3338b20e2604SHong Zhang } else if (BsubN < n) { 333998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3340b20e2604SHong Zhang } 33417cfce09cSHong Zhang 33429566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3343b20e2604SHong Zhang *submat = M; 33443b00a383SHong Zhang 3345e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33483b00a383SHong Zhang 33499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33513b00a383SHong Zhang 33529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33543b00a383SHong Zhang } 33553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33563b00a383SHong Zhang } 33573b00a383SHong Zhang 3358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3359d71ae5a4SJacob Faibussowitsch { 33601358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33613782ecc7SHong Zhang PetscInt csize; 336218e627e3SHong Zhang PetscInt n, i, j, start, end; 33634a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33643782ecc7SHong Zhang MPI_Comm comm; 33653782ecc7SHong Zhang 33663782ecc7SHong Zhang PetscFunctionBegin; 3367bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3368a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33698f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3371d5761cdaSHong Zhang if (isrow_d) { 3372d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3373d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3374d5761cdaSHong Zhang } else { 33759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3376d5761cdaSHong Zhang if (iscol_local) { 3377d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3378d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3379d5761cdaSHong Zhang } 3380d5761cdaSHong Zhang } 33818f69fa7bSHong Zhang } else { 3382e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 338318e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33853782ecc7SHong Zhang if (!n) { 338618e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33873782ecc7SHong Zhang } else { 33889566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33899566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3390ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33918f69fa7bSHong Zhang } 33923782ecc7SHong Zhang 3393e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 339418e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 339618e627e3SHong Zhang if (!n) { 339718e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339818e627e3SHong Zhang } else { 33999566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34009566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 340118e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 340218e627e3SHong Zhang } 340318e627e3SHong Zhang 34049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3405462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 340618e627e3SHong Zhang sameRowDist = tsameDist[0]; 340718e627e3SHong Zhang } 340818e627e3SHong Zhang 340918e627e3SHong Zhang if (sameRowDist) { 3410b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34113b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3414b20e2604SHong Zhang } else { /* sameRowDist */ 34153b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34161358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34171358a193SHong Zhang PetscBool sorted; 34189566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34209566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 342108401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34221358a193SHong Zhang 34239566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34241358a193SHong Zhang if (sorted) { 34251358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34269566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34283782ecc7SHong Zhang } 34291358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 343048c0d076SHong Zhang IS iscol_sub; 34319566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 343248c0d076SHong Zhang if (iscol_sub) { 34339566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343548c0d076SHong Zhang } 34361358a193SHong Zhang } 34371358a193SHong Zhang } 34381358a193SHong Zhang } 34393782ecc7SHong Zhang 3440bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34413782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34429566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 344328b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34443782ecc7SHong Zhang } else { 344548a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34461358a193SHong Zhang } 34473782ecc7SHong Zhang 34489566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34499566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34508f69fa7bSHong Zhang 3451b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3454b79d0421SJed Brown } 34553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34564aa3045dSJed Brown } 34574aa3045dSJed Brown 3458feb78a15SHong Zhang /*@C 345911a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3460feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3461feb78a15SHong Zhang 3462d083f849SBarry Smith Collective 3463feb78a15SHong Zhang 3464feb78a15SHong Zhang Input Parameters: 3465feb78a15SHong Zhang + comm - MPI communicator 3466c0c276a7Ssdargavi . M - the global row size 3467c0c276a7Ssdargavi . N - the global column size 3468feb78a15SHong Zhang . A - "diagonal" portion of matrix 3469c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3470a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter. 3471feb78a15SHong Zhang 3472feb78a15SHong Zhang Output Parameter: 34732ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 347427430b45SBarry Smith 3475feb78a15SHong Zhang Level: advanced 3476feb78a15SHong Zhang 3477feb78a15SHong Zhang Notes: 347811a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347911a5261eSBarry Smith 3480c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3481feb78a15SHong Zhang 3482a3156c1cSJunchao Zhang If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update 3483a3156c1cSJunchao Zhang `B`'s copy on device. We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or 3484a3156c1cSJunchao Zhang `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray` 3485a3156c1cSJunchao Zhang yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`. 3486a3156c1cSJunchao Zhang 3487b1dff882SJunchao Zhang The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others. 3488b1dff882SJunchao Zhang 34891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3490feb78a15SHong Zhang @*/ 3491c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3492d71ae5a4SJacob Faibussowitsch { 3493c0c276a7Ssdargavi PetscInt m, n; 34944ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3495f18d1d10SJunchao Zhang Mat_MPIAIJ *mpiaij; 3496f18d1d10SJunchao Zhang Mat C; 3497feb78a15SHong Zhang 3498feb78a15SHong Zhang PetscFunctionBegin; 3499f18d1d10SJunchao Zhang PetscCall(MatCreate(comm, &C)); 35009566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 350108401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 350258b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3503feb78a15SHong Zhang 3504f18d1d10SJunchao Zhang PetscCall(MatSetSizes(C, m, n, M, N)); 35054ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35064ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 3507f18d1d10SJunchao Zhang PetscCall(MatSetType(C, mpi_mat_type)); 3508a3156c1cSJunchao Zhang if (!garray) { 3509a3156c1cSJunchao Zhang const PetscScalar *ba; 3510a3156c1cSJunchao Zhang 3511a3156c1cSJunchao Zhang B->nonzerostate++; 3512a3156c1cSJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */ 3513a3156c1cSJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3514a3156c1cSJunchao Zhang } 35154ab4d6f4SRichard Tran Mills 3516f18d1d10SJunchao Zhang PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs)); 3517f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->rmap)); 3518f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->cmap)); 3519feb78a15SHong Zhang 3520f18d1d10SJunchao Zhang mpiaij = (Mat_MPIAIJ *)C->data; 3521c0c276a7Ssdargavi mpiaij->A = A; 3522c0c276a7Ssdargavi mpiaij->B = B; 3523c0c276a7Ssdargavi mpiaij->garray = garray; 3524f18d1d10SJunchao Zhang C->preallocated = PETSC_TRUE; 3525f18d1d10SJunchao Zhang C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3526c0c276a7Ssdargavi 3527f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3528f18d1d10SJunchao Zhang PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3529c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3530c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3531c0c276a7Ssdargavi */ 3532f18d1d10SJunchao Zhang PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3533f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3534f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 3535f18d1d10SJunchao Zhang *mat = C; 35363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3537feb78a15SHong Zhang } 3538feb78a15SHong Zhang 3539ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35404aa3045dSJed Brown 3541d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3542d71ae5a4SJacob Faibussowitsch { 354398b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354485f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354598b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35461fd43edeSHong Zhang Mat M, Msub, B = a->B; 354798b658c4SHong Zhang MatScalar *aa; 354800e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3549a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355098b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355198b658c4SHong Zhang IS iscol_sub, iscmap; 355298b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355318e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3554a31a438cSHong Zhang MPI_Comm comm; 35557e2c5f70SBarry Smith 3556a0ff6018SBarry Smith PetscFunctionBegin; 35579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3558d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356028b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3562d5761cdaSHong Zhang 35639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356428b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3565d5761cdaSHong Zhang 35669566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356728b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3568d5761cdaSHong Zhang 35699566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3570d5761cdaSHong Zhang 3571d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35723b00a383SHong Zhang PetscBool flg; 35733b00a383SHong Zhang 35749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35759566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3576bcae8d28SHong Zhang 35773b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3578366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35799566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3580366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3581462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3582366a327dSHong Zhang if (allcolumns) { 3583366a327dSHong Zhang iscol_sub = iscol_local; 35849566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35859566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3586366a327dSHong Zhang 35873b00a383SHong Zhang } else { 35881358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3589244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35938d2139bdSHong Zhang count = 0; 3594a31a438cSHong Zhang k = 0; 3595a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3596a31a438cSHong Zhang j = is_idx[i]; 3597a31a438cSHong Zhang if (j >= cstart && j < cend) { 3598a31a438cSHong Zhang /* diagonal part of mat */ 35998d2139bdSHong Zhang idx[count] = j; 3600366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36014a3daf6eSHong Zhang } else if (Bn) { 3602a31a438cSHong Zhang /* off-diagonal part of mat */ 3603a31a438cSHong Zhang if (j == garray[k]) { 36048d2139bdSHong Zhang idx[count] = j; 3605a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3606a31a438cSHong Zhang } else if (j > garray[k]) { 3607a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3608a31a438cSHong Zhang if (j == garray[k]) { 3609a31a438cSHong Zhang idx[count] = j; 3610a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36118d2139bdSHong Zhang } 36128d2139bdSHong Zhang } 36138d2139bdSHong Zhang } 36148d2139bdSHong Zhang } 36159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36168d2139bdSHong Zhang 36179566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36189566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36199566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3620b6d9b4e0SHong Zhang 36219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3622a31a438cSHong Zhang } 36238b3fa1f7SHong Zhang 36243b00a383SHong Zhang /* (3) Create sequential Msub */ 36259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3626d5761cdaSHong Zhang } 36278d2139bdSHong Zhang 36289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 362957508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 363098b658c4SHong Zhang ii = aij->i; 36319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3632a0ff6018SBarry Smith 3633a0ff6018SBarry Smith /* 3634a0ff6018SBarry Smith m - number of local rows 3635a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3636a0ff6018SBarry Smith rstart - first row in new global matrix generated 3637a0ff6018SBarry Smith */ 36389566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 363998b658c4SHong Zhang 36403b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36413b00a383SHong Zhang /* (4) Create parallel newmat */ 364298b658c4SHong Zhang PetscMPIInt rank, size; 3643bcae8d28SHong Zhang PetscInt csize; 364498b658c4SHong Zhang 36459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364700e6dbe6SBarry Smith 3648a0ff6018SBarry Smith /* 364900e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365000e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3651a0ff6018SBarry Smith */ 365200e6dbe6SBarry Smith 365300e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36549566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36556a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36569566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3657a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3658e2c4fddaSBarry Smith nlocal = m; 36596a6a5d1dSBarry Smith } else { 3660a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3661ab50ec6bSBarry Smith } 3662ab50ec6bSBarry Smith } else { 36636a6a5d1dSBarry Smith nlocal = csize; 36646a6a5d1dSBarry Smith } 36659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366600e6dbe6SBarry Smith rstart = rend - nlocal; 3667aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 366800e6dbe6SBarry Smith 366900e6dbe6SBarry Smith /* next, compute all the lengths */ 367098b658c4SHong Zhang jj = aij->j; 36719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367200e6dbe6SBarry Smith olens = dlens + m; 367300e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367400e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367500e6dbe6SBarry Smith olen = 0; 367600e6dbe6SBarry Smith dlen = 0; 367700e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 367815b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 367900e6dbe6SBarry Smith else dlen++; 368000e6dbe6SBarry Smith jj++; 368100e6dbe6SBarry Smith } 368200e6dbe6SBarry Smith olens[i] = olen; 368300e6dbe6SBarry Smith dlens[i] = dlen; 368400e6dbe6SBarry Smith } 3685b6d9b4e0SHong Zhang 36869566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36879566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 368898b658c4SHong Zhang 36899566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36919566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36929566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36949566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3695d5761cdaSHong Zhang 3696d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3697a0ff6018SBarry Smith M = *newmat; 36989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 369908401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37009566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3701c48de900SBarry Smith /* 3702c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3703c48de900SBarry Smith rather than the slower MatSetValues(). 3704c48de900SBarry Smith */ 3705c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3706c48de900SBarry Smith M->assembled = PETSC_FALSE; 3707a0ff6018SBarry Smith } 3708548ecf4dSHong Zhang 37093b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37119566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371298b658c4SHong Zhang 371398b658c4SHong Zhang jj = aij->j; 37149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3715a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3716a0ff6018SBarry Smith row = rstart + i; 371700e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 371815b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37199566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37209371c9d4SSatish Balay jj += nz; 37219371c9d4SSatish Balay aa += nz; 3722a0ff6018SBarry Smith } 37239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3725a0ff6018SBarry Smith 37269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3728fee21e36SBarry Smith 37299566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373098b658c4SHong Zhang 373198b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3732fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37333b00a383SHong Zhang *newmat = M; 3734f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373698b658c4SHong Zhang 3737f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 373998b658c4SHong Zhang 3740f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3742bcae8d28SHong Zhang 3743bcae8d28SHong Zhang if (iscol_local) { 3744f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3746bcae8d28SHong Zhang } 374798b658c4SHong Zhang } 37483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3749a0ff6018SBarry Smith } 3750273d9f13SBarry Smith 3751df40acb1SHong Zhang /* 3752df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3753df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3754df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3755df40acb1SHong Zhang 375611a5261eSBarry Smith This requires a sequential iscol with all indices. 3757df40acb1SHong Zhang */ 3758d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3759d71ae5a4SJacob Faibussowitsch { 3760df40acb1SHong Zhang PetscMPIInt rank, size; 3761df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3762df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3763df40acb1SHong Zhang Mat M, Mreuse; 376498b658c4SHong Zhang MatScalar *aa, *vwork; 3765df40acb1SHong Zhang MPI_Comm comm; 3766df40acb1SHong Zhang Mat_SeqAIJ *aij; 37670b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3768df40acb1SHong Zhang 3769df40acb1SHong Zhang PetscFunctionBegin; 37709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3773df40acb1SHong Zhang 37740b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37759566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37770b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3778462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37790b27a90eSHong Zhang 3780df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37819566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378228b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3784df40acb1SHong Zhang } else { 37859566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3786df40acb1SHong Zhang } 3787df40acb1SHong Zhang 3788df40acb1SHong Zhang /* 3789df40acb1SHong Zhang m - number of local rows 3790df40acb1SHong Zhang n - number of columns (same on all processors) 3791df40acb1SHong Zhang rstart - first row in new global matrix generated 3792df40acb1SHong Zhang */ 37939566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37949566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3795df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 379657508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3797df40acb1SHong Zhang ii = aij->i; 3798df40acb1SHong Zhang jj = aij->j; 3799df40acb1SHong Zhang 3800df40acb1SHong Zhang /* 3801df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3802df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3803df40acb1SHong Zhang */ 3804df40acb1SHong Zhang 3805df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3806df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38079566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3808df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3809df40acb1SHong Zhang nlocal = m; 3810df40acb1SHong Zhang } else { 3811df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3812df40acb1SHong Zhang } 3813df40acb1SHong Zhang } else { 3814df40acb1SHong Zhang nlocal = csize; 3815df40acb1SHong Zhang } 38169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3817df40acb1SHong Zhang rstart = rend - nlocal; 3818aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3819df40acb1SHong Zhang 3820df40acb1SHong Zhang /* next, compute all the lengths */ 38219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3822df40acb1SHong Zhang olens = dlens + m; 3823df40acb1SHong Zhang for (i = 0; i < m; i++) { 3824df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3825df40acb1SHong Zhang olen = 0; 3826df40acb1SHong Zhang dlen = 0; 3827df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3828df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3829df40acb1SHong Zhang else dlen++; 3830df40acb1SHong Zhang jj++; 3831df40acb1SHong Zhang } 3832df40acb1SHong Zhang olens[i] = olen; 3833df40acb1SHong Zhang dlens[i] = dlen; 3834df40acb1SHong Zhang } 38359566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38379566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38389566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38399566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38409566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3841df40acb1SHong Zhang } else { 3842df40acb1SHong Zhang PetscInt ml, nl; 3843df40acb1SHong Zhang 3844df40acb1SHong Zhang M = *newmat; 38459566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384608401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38479566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3848df40acb1SHong Zhang /* 3849df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3850df40acb1SHong Zhang rather than the slower MatSetValues(). 3851df40acb1SHong Zhang */ 3852df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3853df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3854df40acb1SHong Zhang } 38559566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 385657508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3857df40acb1SHong Zhang ii = aij->i; 3858df40acb1SHong Zhang jj = aij->j; 38592e5835c6SStefano Zampini 38602e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3862df40acb1SHong Zhang for (i = 0; i < m; i++) { 3863df40acb1SHong Zhang row = rstart + i; 3864df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38659371c9d4SSatish Balay cwork = jj; 38668e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38679371c9d4SSatish Balay vwork = aa; 38688e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38699566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3870df40acb1SHong Zhang } 38719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3872df40acb1SHong Zhang 38739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3875df40acb1SHong Zhang *newmat = M; 3876df40acb1SHong Zhang 3877df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3878df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38799566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3881df40acb1SHong Zhang } 38823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3883df40acb1SHong Zhang } 3884df40acb1SHong Zhang 3885ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3886d71ae5a4SJacob Faibussowitsch { 38876a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38889f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3889ccd8e176SBarry Smith const PetscInt *JJ; 3890eeb24464SBarry Smith PetscBool nooffprocentries; 38916a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3892ccd8e176SBarry Smith 3893ccd8e176SBarry Smith PetscFunctionBegin; 38949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3896d0f46423SBarry Smith m = B->rmap->n; 3897d0f46423SBarry Smith cstart = B->cmap->rstart; 3898d0f46423SBarry Smith cend = B->cmap->rend; 3899d0f46423SBarry Smith rstart = B->rmap->rstart; 39009f0612e4SBarry Smith irstart = Ii[0]; 3901899cda47SBarry Smith 39029566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3903ccd8e176SBarry Smith 390476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39058f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3906ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39079f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 390808401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 390908401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391008401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3911ecc77c7aSBarry Smith } 391276bd3646SJed Brown } 3913ecc77c7aSBarry Smith 39148f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3915b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39169f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3917ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3918ccd8e176SBarry Smith d = 0; 39190daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39200daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3921ccd8e176SBarry Smith } 3922ccd8e176SBarry Smith d_nnz[i] = d; 3923ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3924ccd8e176SBarry Smith } 39259566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39269566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3927ccd8e176SBarry Smith 39288f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3929ccd8e176SBarry Smith ii = i + rstart; 39309f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3931ccd8e176SBarry Smith } 3932eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3933eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3936eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3937ccd8e176SBarry Smith 39386a3d2595SBarry Smith /* count number of entries below block diagonal */ 39396a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39406a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39416a3d2595SBarry Smith Aij->ld = ld; 39426a3d2595SBarry Smith for (i = 0; i < m; i++) { 39436a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39446a3d2595SBarry Smith j = 0; 3945ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39466a3d2595SBarry Smith ld[i] = j; 3947720a2405SPierre Jolivet if (J) J += nnz; 39486a3d2595SBarry Smith } 39496a3d2595SBarry Smith 39509566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3952ccd8e176SBarry Smith } 3953ccd8e176SBarry Smith 39541eea217eSSatish Balay /*@ 395511a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3956ccd8e176SBarry Smith (the default parallel PETSc format). 3957ccd8e176SBarry Smith 3958d083f849SBarry Smith Collective 3959ccd8e176SBarry Smith 3960ccd8e176SBarry Smith Input Parameters: 3961a1661176SMatthew Knepley + B - the matrix 3962d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3963d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3964ccd8e176SBarry Smith - v - optional values in the matrix 3965ccd8e176SBarry Smith 3966ccd8e176SBarry Smith Level: developer 3967ccd8e176SBarry Smith 396812251496SSatish Balay Notes: 39692ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39702ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397111a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397212251496SSatish Balay 39732ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397412251496SSatish Balay 3975a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3976a4bd8bc0SBarry Smith 3977a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3978a4bd8bc0SBarry Smith 3979a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3980a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3981a4bd8bc0SBarry Smith 398212251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398312251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3984c5e4d11fSDmitry Karpeev as shown 398527430b45SBarry Smith .vb 398627430b45SBarry Smith 1 0 0 398727430b45SBarry Smith 2 0 3 P0 398827430b45SBarry Smith ------- 398927430b45SBarry Smith 4 5 6 P1 399027430b45SBarry Smith 399127430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399227430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399327430b45SBarry Smith j = {0,0,2} [size = 3] 399427430b45SBarry Smith v = {1,2,3} [size = 3] 399527430b45SBarry Smith 399627430b45SBarry Smith Process1 [P1] rows_owned=[2] 399727430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 399827430b45SBarry Smith j = {0,1,2} [size = 3] 399927430b45SBarry Smith v = {4,5,6} [size = 3] 400027430b45SBarry Smith .ve 400112251496SSatish Balay 4002fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4003a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4004ccd8e176SBarry Smith @*/ 4005d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4006d71ae5a4SJacob Faibussowitsch { 4007ccd8e176SBarry Smith PetscFunctionBegin; 4008cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4010ccd8e176SBarry Smith } 4011ccd8e176SBarry Smith 40125d83a8b1SBarry Smith /*@ 401311a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4014273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4015273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401620f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4017273d9f13SBarry Smith 4018d083f849SBarry Smith Collective 4019273d9f13SBarry Smith 4020273d9f13SBarry Smith Input Parameters: 40211c4f3114SJed Brown + B - the matrix 4022273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4023273d9f13SBarry Smith (same value is used for all local rows) 4024273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4025273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40262ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4027273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40283287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40293287b5eaSJed Brown the diagonal entry even if it is zero. 4030273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4031273d9f13SBarry Smith submatrix (same value is used for all local rows). 4032273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4033273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40342ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4035273d9f13SBarry Smith structure. The size of this array is equal to the number 4036273d9f13SBarry Smith of local rows, i.e 'm'. 4037273d9f13SBarry Smith 40382920cce0SJacob Faibussowitsch Example Usage: 403927430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404027430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404127430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404227430b45SBarry Smith as follows 404327430b45SBarry Smith 404427430b45SBarry Smith .vb 404527430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404627430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 404727430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 404827430b45SBarry Smith ------------------------------------- 404927430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405027430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405127430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405227430b45SBarry Smith ------------------------------------- 405327430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405427430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405527430b45SBarry Smith .ve 405627430b45SBarry Smith 405727430b45SBarry Smith This can be represented as a collection of submatrices as 405827430b45SBarry Smith .vb 405927430b45SBarry Smith A B C 406027430b45SBarry Smith D E F 406127430b45SBarry Smith G H I 406227430b45SBarry Smith .ve 406327430b45SBarry Smith 406427430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406527430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406627430b45SBarry Smith 406727430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406827430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406927430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407027430b45SBarry Smith 407127430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407227430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407327430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407427430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407527430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40765163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 407727430b45SBarry Smith 407820f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40795163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40805163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40815163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40825163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408320f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408427430b45SBarry Smith .vb 408527430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408627430b45SBarry Smith proc1 dnz = 3, o_nz = 2 408727430b45SBarry Smith proc2 dnz = 1, o_nz = 4 408827430b45SBarry Smith .ve 408920f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409027430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409127430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409227430b45SBarry Smith 34 values. 409327430b45SBarry Smith 409420f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409527430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409620f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 409727430b45SBarry Smith .vb 409827430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 409927430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410027430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410127430b45SBarry Smith .ve 410227430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410327430b45SBarry Smith hence pre-allocation is perfect. 410427430b45SBarry Smith 410527430b45SBarry Smith Level: intermediate 410627430b45SBarry Smith 410727430b45SBarry Smith Notes: 410849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 410949a6f317SBarry Smith 411027430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41110598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4112651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4113273d9f13SBarry Smith 4114273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4115273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4116273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4117273d9f13SBarry Smith 4118273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4119a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4120a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4121a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4122a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4123a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4124a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4125a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4126a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4127273d9f13SBarry Smith 41282ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4129273d9f13SBarry Smith 413027430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4131aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413227430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4133aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4134aa95bbe8SBarry Smith 41351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4136a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4137273d9f13SBarry Smith @*/ 4138d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4139d71ae5a4SJacob Faibussowitsch { 4140273d9f13SBarry Smith PetscFunctionBegin; 41416ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41426ba663aaSJed Brown PetscValidType(B, 1); 4143cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4145273d9f13SBarry Smith } 4146273d9f13SBarry Smith 414758d36128SBarry Smith /*@ 414811a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41498f8f2f0dSBarry Smith CSR format for the local rows. 41502fb0ec9aSBarry Smith 4151d083f849SBarry Smith Collective 41522fb0ec9aSBarry Smith 41532fb0ec9aSBarry Smith Input Parameters: 41542fb0ec9aSBarry Smith + comm - MPI communicator 415511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41562fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4157d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4158d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4159d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4160d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41615693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41625693b835SJunchao Zhang . j - global column indices 4163f1f2ae84SBarry Smith - a - optional matrix values 41642fb0ec9aSBarry Smith 41652fb0ec9aSBarry Smith Output Parameter: 41662fb0ec9aSBarry Smith . mat - the matrix 416703bfb495SBarry Smith 41682fb0ec9aSBarry Smith Level: intermediate 41692fb0ec9aSBarry Smith 41702fb0ec9aSBarry Smith Notes: 41712ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4172d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4173d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41742fb0ec9aSBarry Smith 41752ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417612251496SSatish Balay 41775693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4178a4bd8bc0SBarry Smith 41795693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4180a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4181a4bd8bc0SBarry Smith 418212251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4183d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4184c5e4d11fSDmitry Karpeev as shown 41852ef1f0ffSBarry Smith .vb 41862ef1f0ffSBarry Smith 1 0 0 41872ef1f0ffSBarry Smith 2 0 3 P0 41882ef1f0ffSBarry Smith ------- 41892ef1f0ffSBarry Smith 4 5 6 P1 41908f8f2f0dSBarry Smith 41912ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41922ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41932ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41942ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41952fb0ec9aSBarry Smith 41962ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41972ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41982ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41992ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42002ef1f0ffSBarry Smith .ve 42012ef1f0ffSBarry Smith 4202d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42035693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42042fb0ec9aSBarry Smith @*/ 4205d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4206d71ae5a4SJacob Faibussowitsch { 42072fb0ec9aSBarry Smith PetscFunctionBegin; 420808401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 420908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42109566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42129566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42139566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42162fb0ec9aSBarry Smith } 42172fb0ec9aSBarry Smith 42188f8f2f0dSBarry Smith /*@ 421911a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42202ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42212ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42226a3d2595SBarry Smith 42236a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42248f8f2f0dSBarry Smith 42258f8f2f0dSBarry Smith Collective 42268f8f2f0dSBarry Smith 42278f8f2f0dSBarry Smith Input Parameters: 42288f8f2f0dSBarry Smith + mat - the matrix 422911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42308f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423111a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42328f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42358f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42368f8f2f0dSBarry Smith . J - column indices 42378f8f2f0dSBarry Smith - v - matrix values 42388f8f2f0dSBarry Smith 42392ef1f0ffSBarry Smith Level: deprecated 42408f8f2f0dSBarry Smith 42411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4242a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42438f8f2f0dSBarry Smith @*/ 4244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4245d71ae5a4SJacob Faibussowitsch { 42466a3d2595SBarry Smith PetscInt nnz, i; 42478f8f2f0dSBarry Smith PetscBool nooffprocentries; 42488f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4249fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4250fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42518f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42526a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42536a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42548f8f2f0dSBarry Smith 42558f8f2f0dSBarry Smith PetscFunctionBegin; 4256aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 425808401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 425908401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42608f8f2f0dSBarry Smith 42619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42638f8f2f0dSBarry Smith 42648f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42654c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42664c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42674c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42684c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42694c17f1ccSBarry Smith } 42704c17f1ccSBarry Smith } 42718f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42728f8f2f0dSBarry Smith Iii = Ii[i]; 42738f8f2f0dSBarry Smith ldi = ld[i]; 42748f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42788f8f2f0dSBarry Smith ad += md; 42798f8f2f0dSBarry Smith ao += nnz - md; 42808f8f2f0dSBarry Smith } 42818f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42828f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42859566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42869566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42908f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42928f8f2f0dSBarry Smith } 42938f8f2f0dSBarry Smith 42946a3d2595SBarry Smith /*@ 429511a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42966a3d2595SBarry Smith 42976a3d2595SBarry Smith Collective 42986a3d2595SBarry Smith 42996a3d2595SBarry Smith Input Parameters: 43006a3d2595SBarry Smith + mat - the matrix 43016a3d2595SBarry Smith - v - matrix values, stored by row 43026a3d2595SBarry Smith 43036a3d2595SBarry Smith Level: intermediate 43046a3d2595SBarry Smith 4305a4bd8bc0SBarry Smith Notes: 43066a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43076a3d2595SBarry Smith 4308a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4309a4bd8bc0SBarry Smith 43101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4311a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43126a3d2595SBarry Smith @*/ 4313d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4314d71ae5a4SJacob Faibussowitsch { 43156a3d2595SBarry Smith PetscInt nnz, i, m; 43166a3d2595SBarry Smith PetscBool nooffprocentries; 43176a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43186a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43196a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43206a3d2595SBarry Smith PetscScalar *ad, *ao; 43216a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43226a3d2595SBarry Smith PetscInt ldi, Iii, md; 43236a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43246a3d2595SBarry Smith 43256a3d2595SBarry Smith PetscFunctionBegin; 43266a3d2595SBarry Smith m = mat->rmap->n; 43276a3d2595SBarry Smith 43286a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43296a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43306a3d2595SBarry Smith Iii = 0; 43316a3d2595SBarry Smith for (i = 0; i < m; i++) { 43326a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43336a3d2595SBarry Smith ldi = ld[i]; 43346a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43356a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43366a3d2595SBarry Smith ad += md; 4337810441c8SPierre Jolivet if (ao) { 4338810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4339810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43406a3d2595SBarry Smith ao += nnz - md; 4341810441c8SPierre Jolivet } 43426a3d2595SBarry Smith Iii += nnz; 43436a3d2595SBarry Smith } 43446a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43456a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43466a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43476a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43486a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43496a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43506a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43516a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43526a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43536a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43556a3d2595SBarry Smith } 43566a3d2595SBarry Smith 43575d83a8b1SBarry Smith /*@ 435811a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4359273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4360273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43612ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4362273d9f13SBarry Smith 4363d083f849SBarry Smith Collective 4364273d9f13SBarry Smith 4365273d9f13SBarry Smith Input Parameters: 4366273d9f13SBarry Smith + comm - MPI communicator 436711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4368273d9f13SBarry Smith This value should be the same as the local size used in creating the 4369273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4370273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437145f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4372273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4375273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4376273d9f13SBarry Smith (same value is used for all local rows) 4377273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4378273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43792ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4380273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4381273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4382273d9f13SBarry Smith submatrix (same value is used for all local rows). 4383273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4384273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43852ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4386273d9f13SBarry Smith structure. The size of this array is equal to the number 4387273d9f13SBarry Smith of local rows, i.e 'm'. 4388273d9f13SBarry Smith 4389273d9f13SBarry Smith Output Parameter: 4390273d9f13SBarry Smith . A - the matrix 4391273d9f13SBarry Smith 439227430b45SBarry Smith Options Database Keys: 439327430b45SBarry Smith + -mat_no_inode - Do not use inodes 439427430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439527430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4396727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4397727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 439827430b45SBarry Smith 43992ef1f0ffSBarry Smith Level: intermediate 44002ef1f0ffSBarry Smith 440127430b45SBarry Smith Notes: 440277433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4403f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440411a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4405175b88e8SBarry Smith 440649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 440749a6f317SBarry Smith 44082ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44092ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4410273d9f13SBarry Smith storage requirements for this matrix. 4411273d9f13SBarry Smith 441211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4413273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4414273d9f13SBarry Smith that argument. 4415273d9f13SBarry Smith 4416727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4417727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4418727bdf9bSBarry Smith 4419273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4420273d9f13SBarry Smith (possibly both). 4421273d9f13SBarry Smith 442233a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4423727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4424727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4425727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 442633a7c187SSatish Balay values corresponding to [m x N] submatrix. 4427273d9f13SBarry Smith 442833a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 442933a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4430df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443133a7c187SSatish Balay 443233a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443333a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443433a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443533a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443633a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443733a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44380b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44390b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 444033a7c187SSatish Balay 444133a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444233a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444333a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444433a7c187SSatish Balay local matrix (a rectangular submatrix). 4445273d9f13SBarry Smith 44462ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4447273d9f13SBarry Smith 444897d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44492ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4450da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4451da57b5cdSKarl Rupp .vb 44522ef1f0ffSBarry Smith MatCreate(..., &A); 44532ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44542ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44552ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4456da57b5cdSKarl Rupp .ve 445797d05335SKris Buschelman 4458273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4459273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4460273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4461273d9f13SBarry Smith 44622920cce0SJacob Faibussowitsch Example Usage: 4463273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4464273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4465273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4466efc377ccSKarl Rupp as follows 4467273d9f13SBarry Smith 4468273d9f13SBarry Smith .vb 4469273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4470273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4471273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4472273d9f13SBarry Smith ------------------------------------- 4473273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4474273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4475273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4476273d9f13SBarry Smith ------------------------------------- 4477273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4478273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4479273d9f13SBarry Smith .ve 4480273d9f13SBarry Smith 4481da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4482273d9f13SBarry Smith 4483273d9f13SBarry Smith .vb 4484273d9f13SBarry Smith A B C 4485273d9f13SBarry Smith D E F 4486273d9f13SBarry Smith G H I 4487273d9f13SBarry Smith .ve 4488273d9f13SBarry Smith 4489273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4490273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4491273d9f13SBarry Smith 4492273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4493273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4494273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4495273d9f13SBarry Smith 4496273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4497273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4498273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4499273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450027430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45015163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4502273d9f13SBarry Smith 45032ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45045163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45055163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45065163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45075163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45082ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4509273d9f13SBarry Smith .vb 451027430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451127430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451227430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4513273d9f13SBarry Smith .ve 45142ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4515273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4516273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4517273d9f13SBarry Smith 34 values. 4518273d9f13SBarry Smith 45192ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4520a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4521da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4522273d9f13SBarry Smith .vb 452327430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452427430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452527430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4526273d9f13SBarry Smith .ve 4527273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4528273d9f13SBarry Smith hence pre-allocation is perfect. 4529273d9f13SBarry Smith 45301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4531727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4532727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4533273d9f13SBarry Smith @*/ 4534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4535d71ae5a4SJacob Faibussowitsch { 4536b1d57f15SBarry Smith PetscMPIInt size; 4537273d9f13SBarry Smith 4538273d9f13SBarry Smith PetscFunctionBegin; 45399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4542273d9f13SBarry Smith if (size > 1) { 45439566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45449566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4545273d9f13SBarry Smith } else { 45469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4548273d9f13SBarry Smith } 45493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4550273d9f13SBarry Smith } 4551195d93cdSBarry Smith 4552127ca0efSMatthew Knepley /*@C 45530ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4554127ca0efSMatthew Knepley 45552ef1f0ffSBarry Smith Not Collective 4556127ca0efSMatthew Knepley 4557127ca0efSMatthew Knepley Input Parameter: 455811a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4559127ca0efSMatthew Knepley 4560127ca0efSMatthew Knepley Output Parameters: 456111a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 456211a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45632ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4564127ca0efSMatthew Knepley 45650ab4885dSBarry Smith Level: intermediate 45660ab4885dSBarry Smith 456711a5261eSBarry Smith Note: 45682ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45692ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45702ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4571127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4572127ca0efSMatthew Knepley 4573ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4574127ca0efSMatthew Knepley @*/ 4575d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4576d71ae5a4SJacob Faibussowitsch { 4577195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 457804cf37c7SBarry Smith PetscBool flg; 4579b1d57f15SBarry Smith 4580195d93cdSBarry Smith PetscFunctionBegin; 45819566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 458228b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 458321e72a00SBarry Smith if (Ad) *Ad = a->A; 458421e72a00SBarry Smith if (Ao) *Ao = a->B; 458521e72a00SBarry Smith if (colmap) *colmap = a->garray; 45863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4587195d93cdSBarry Smith } 4588a2243be0SBarry Smith 4589d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4590d71ae5a4SJacob Faibussowitsch { 4591110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 45929b8102ccSHong Zhang PetscInt *indx; 4593110bb6e1SHong Zhang PetscScalar *values; 4594421ddf4dSJunchao Zhang MatType rootType; 45959b8102ccSHong Zhang 45969b8102ccSHong Zhang PetscFunctionBegin; 45979566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4598110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4599110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4600110bb6e1SHong Zhang 460148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4602a22543b6SHong Zhang /* Check sum(n) = N */ 4603462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 460408401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4605a22543b6SHong Zhang 46069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46079b8102ccSHong Zhang rstart -= m; 46089b8102ccSHong Zhang 4609d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46109b8102ccSHong Zhang for (i = 0; i < m; i++) { 46119566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46129566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46139566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46149b8102ccSHong Zhang } 46159b8102ccSHong Zhang 46169566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46189566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46199566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46209566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46219566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46239566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4624d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46259566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46269b8102ccSHong Zhang } 46279b8102ccSHong Zhang 4628110bb6e1SHong Zhang /* numeric phase */ 46299566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46309b8102ccSHong Zhang for (i = 0; i < m; i++) { 46319566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46329b8102ccSHong Zhang Ii = i + rstart; 46339566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46349566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46359b8102ccSHong Zhang } 46369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4639c5d6d63eSBarry Smith } 4640c5d6d63eSBarry Smith 464149abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4642d71ae5a4SJacob Faibussowitsch { 464349abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 464451a7d1a8SHong Zhang 464551a7d1a8SHong Zhang PetscFunctionBegin; 46463ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46479566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46489566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46499566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46509566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46519566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46529566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46539566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46549566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46559566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46569566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46579566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46589566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46599566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46609566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 466251a7d1a8SHong Zhang } 466351a7d1a8SHong Zhang 4664c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4665c6db04a5SJed Brown #include <petscbt.h> 46664ebed01fSBarry Smith 4667d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4668d71ae5a4SJacob Faibussowitsch { 4669ce94432eSBarry Smith MPI_Comm comm; 467055d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4671b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 46726497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 46736497c311SBarry Smith PetscMPIInt proc, k; 4674b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 46756497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4676b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 467755d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 467855d1abb9SHong Zhang MPI_Status *status; 4679fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4680dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 468155d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4682776b82aeSLisandro Dalcin PetscContainer container; 468355d1abb9SHong Zhang 468455d1abb9SHong Zhang PetscFunctionBegin; 46859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 46869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 46873c2c1871SHong Zhang 46889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 46899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 469055d1abb9SHong Zhang 46919566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 469228b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 46939566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 46949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4695fff043a9SJunchao Zhang aa = a_a; 4696bf0cc555SLisandro Dalcin 469755d1abb9SHong Zhang bi = merge->bi; 469855d1abb9SHong Zhang bj = merge->bj; 469955d1abb9SHong Zhang buf_ri = merge->buf_ri; 470055d1abb9SHong Zhang buf_rj = merge->buf_rj; 470155d1abb9SHong Zhang 47029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47037a2fc3feSBarry Smith owners = merge->rowmap->range; 470455d1abb9SHong Zhang len_s = merge->len_s; 470555d1abb9SHong Zhang 470655d1abb9SHong Zhang /* send and recv matrix values */ 47079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47089566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 470955d1abb9SHong Zhang 47109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 471155d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 471255d1abb9SHong Zhang if (!len_s[proc]) continue; 471355d1abb9SHong Zhang i = owners[proc]; 47146497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 471555d1abb9SHong Zhang k++; 471655d1abb9SHong Zhang } 471755d1abb9SHong Zhang 47189566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47199566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47209566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 472155d1abb9SHong Zhang 47229566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47239566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 472455d1abb9SHong Zhang 472555d1abb9SHong Zhang /* insert mat values of mpimat */ 47269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47279566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 472855d1abb9SHong Zhang 472955d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 473055d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4731f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 473255d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4733a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 473455d1abb9SHong Zhang } 473555d1abb9SHong Zhang 473655d1abb9SHong Zhang /* set values of ba */ 47377a2fc3feSBarry Smith m = merge->rowmap->n; 473855d1abb9SHong Zhang for (i = 0; i < m; i++) { 473955d1abb9SHong Zhang arow = owners[rank] + i; 474055d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 474155d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47429566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 474355d1abb9SHong Zhang 474455d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 474555d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 474655d1abb9SHong Zhang aj = a->j + ai[arow]; 4747fff043a9SJunchao Zhang aa = a_a + ai[arow]; 474855d1abb9SHong Zhang nextaj = 0; 474955d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 475055d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 475155d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 475255d1abb9SHong Zhang } 475355d1abb9SHong Zhang } 475455d1abb9SHong Zhang 475555d1abb9SHong Zhang /* add received vals into ba */ 475655d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 475755d1abb9SHong Zhang /* i-th row */ 475855d1abb9SHong Zhang if (i == *nextrow[k]) { 475955d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4760f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4761f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 476255d1abb9SHong Zhang nextaj = 0; 476355d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 476455d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 476555d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 476655d1abb9SHong Zhang } 476755d1abb9SHong Zhang } 47689371c9d4SSatish Balay nextrow[k]++; 47699371c9d4SSatish Balay nextai[k]++; 477055d1abb9SHong Zhang } 477155d1abb9SHong Zhang } 47729566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 477355d1abb9SHong Zhang } 47749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 477755d1abb9SHong Zhang 47789566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47799566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47809566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47819566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 478455d1abb9SHong Zhang } 478538f152feSBarry Smith 4786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4787d71ae5a4SJacob Faibussowitsch { 478855a3bba9SHong Zhang Mat B_mpi; 4789c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4790b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4791b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4792d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 47936497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4794c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4795b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 479655d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 479758cb9c82SHong Zhang MPI_Status *status; 47980298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4799be0fcf8dSHong Zhang PetscBT lnkbt; 480051a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4801776b82aeSLisandro Dalcin PetscContainer container; 480202c68681SHong Zhang 4803e5f2cdd8SHong Zhang PetscFunctionBegin; 48049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48053c2c1871SHong Zhang 480638f152feSBarry Smith /* make sure it is a PETSc comm */ 48079566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 481055d1abb9SHong Zhang 48119566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4813e5f2cdd8SHong Zhang 48146abd8857SHong Zhang /* determine row ownership */ 48159566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 482255d1abb9SHong Zhang 48237a2fc3feSBarry Smith m = merge->rowmap->n; 48247a2fc3feSBarry Smith owners = merge->rowmap->range; 48256abd8857SHong Zhang 48266abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48273e06a4e6SHong Zhang len_s = merge->len_s; 482851a7d1a8SHong Zhang 48292257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4830c2234fe3SHong Zhang merge->nsend = 0; 48316497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48322257cef7SHong Zhang len_si[proc] = 0; 48333e06a4e6SHong Zhang if (proc == rank) { 48346abd8857SHong Zhang len_s[proc] = 0; 48353e06a4e6SHong Zhang } else { 48366497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48376497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48383e06a4e6SHong Zhang } 48393e06a4e6SHong Zhang if (len_s[proc]) { 4840c2234fe3SHong Zhang merge->nsend++; 48412257cef7SHong Zhang nrows = 0; 48422257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48432257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48442257cef7SHong Zhang } 48456497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48462257cef7SHong Zhang len += len_si[proc]; 4847409913e3SHong Zhang } 484858cb9c82SHong Zhang } 4849409913e3SHong Zhang 48502257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48519566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48529566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4853671beff6SHong Zhang 48543e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48559566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48569566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 485702c68681SHong Zhang 48583e06a4e6SHong Zhang /* post the Isend of j-structure */ 48599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48603e06a4e6SHong Zhang 48616497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4862409913e3SHong Zhang if (!len_s[proc]) continue; 486302c68681SHong Zhang i = owners[proc]; 48646497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 486551a7d1a8SHong Zhang k++; 486651a7d1a8SHong Zhang } 486751a7d1a8SHong Zhang 48683e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48699566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48709566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 487102c68681SHong Zhang 487202c68681SHong Zhang /* send and recv i-structure */ 48739566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48749566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 487502c68681SHong Zhang 48769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48773e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48786497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 487902c68681SHong Zhang if (!len_s[proc]) continue; 48803e06a4e6SHong Zhang /* form outgoing message for i-structure: 48813e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48823e06a4e6SHong Zhang [1:nrows]: row index (global) 48833e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48843e06a4e6SHong Zhang */ 48852257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 48863e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 48873e06a4e6SHong Zhang buf_si[0] = nrows; 48883e06a4e6SHong Zhang buf_si_i[0] = 0; 48893e06a4e6SHong Zhang nrows = 0; 48903e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48913e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 48923e06a4e6SHong Zhang if (anzi) { 48933e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 48943e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 48953e06a4e6SHong Zhang nrows++; 48963e06a4e6SHong Zhang } 48973e06a4e6SHong Zhang } 48986497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 489902c68681SHong Zhang k++; 49002257cef7SHong Zhang buf_si += len_si[proc]; 490102c68681SHong Zhang } 49022257cef7SHong Zhang 49039566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49049566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 490502c68681SHong Zhang 49069566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 490748a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49083e06a4e6SHong Zhang 49099566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49109566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49119566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49129566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49139566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49149566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49159566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 491658cb9c82SHong Zhang 4917bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 491858cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 492058cb9c82SHong Zhang bi[0] = 0; 492158cb9c82SHong Zhang 4922be0fcf8dSHong Zhang /* create and initialize a linked list */ 4923be0fcf8dSHong Zhang nlnk = N + 1; 49249566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 492558cb9c82SHong Zhang 4926bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4927bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49289566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49292205254eSKarl Rupp 493058cb9c82SHong Zhang current_space = free_space; 493158cb9c82SHong Zhang 4932bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49339566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49341d79065fSBarry Smith 49353e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49362257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49373e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49383e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4939a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49403e06a4e6SHong Zhang } 49412257cef7SHong Zhang 4942d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4943bcc1bcd5SHong Zhang len = 0; 494458cb9c82SHong Zhang for (i = 0; i < m; i++) { 494558cb9c82SHong Zhang bnzi = 0; 494658cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 494758cb9c82SHong Zhang arow = owners[rank] + i; 494858cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 494958cb9c82SHong Zhang aj = a->j + ai[arow]; 49509566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 495158cb9c82SHong Zhang bnzi += nlnk; 495258cb9c82SHong Zhang /* add received col data into lnk */ 495351a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 495455d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49553e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49563e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49579566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49583e06a4e6SHong Zhang bnzi += nlnk; 49599371c9d4SSatish Balay nextrow[k]++; 49609371c9d4SSatish Balay nextai[k]++; 49613e06a4e6SHong Zhang } 496258cb9c82SHong Zhang } 4963bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 496458cb9c82SHong Zhang 496558cb9c82SHong Zhang /* if free space is not available, make more free space */ 496648a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 496758cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49689566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49699566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4970bcc1bcd5SHong Zhang 497158cb9c82SHong Zhang current_space->array += bnzi; 497258cb9c82SHong Zhang current_space->local_used += bnzi; 497358cb9c82SHong Zhang current_space->local_remaining -= bnzi; 497458cb9c82SHong Zhang 497558cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 497658cb9c82SHong Zhang } 4977bcc1bcd5SHong Zhang 49789566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4979bcc1bcd5SHong Zhang 49809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 49819566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49829566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4983409913e3SHong Zhang 4984bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 49859566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 49869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 498754b84b50SHong Zhang if (n == PETSC_DECIDE) { 49889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 498954b84b50SHong Zhang } else { 49909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 499154b84b50SHong Zhang } 49929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 49939566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 49949566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 4995d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 49969566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 499758cb9c82SHong Zhang 499890431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 49996abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5000affca5deSHong Zhang merge->bi = bi; 5001affca5deSHong Zhang merge->bj = bj; 500202c68681SHong Zhang merge->buf_ri = buf_ri; 500302c68681SHong Zhang merge->buf_rj = buf_rj; 50040298fd71SBarry Smith merge->coi = NULL; 50050298fd71SBarry Smith merge->coj = NULL; 50060298fd71SBarry Smith merge->owners_co = NULL; 5007affca5deSHong Zhang 50089566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5009bf0cc555SLisandro Dalcin 5010affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50119566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50129566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 501349abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50149566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50159566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5016affca5deSHong Zhang *mpimat = B_mpi; 501738f152feSBarry Smith 50189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5020e5f2cdd8SHong Zhang } 502125616d81SHong Zhang 5022cc4c1da9SBarry Smith /*@ 502311a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5024d4036a1aSHong Zhang matrices from each processor 5025d4036a1aSHong Zhang 5026d083f849SBarry Smith Collective 5027d4036a1aSHong Zhang 5028d4036a1aSHong Zhang Input Parameters: 5029d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5030d4036a1aSHong Zhang . seqmat - the input sequential matrices 503111a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 503211a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 503311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5034d4036a1aSHong Zhang 5035d4036a1aSHong Zhang Output Parameter: 5036d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5037d4036a1aSHong Zhang 5038d4036a1aSHong Zhang Level: advanced 5039d4036a1aSHong Zhang 504011a5261eSBarry Smith Note: 5041d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5042d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5043b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50442ef1f0ffSBarry Smith 50451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5046d4036a1aSHong Zhang @*/ 5047d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5048d71ae5a4SJacob Faibussowitsch { 50497e63b356SHong Zhang PetscMPIInt size; 505055d1abb9SHong Zhang 505155d1abb9SHong Zhang PetscFunctionBegin; 50529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50537e63b356SHong Zhang if (size == 1) { 50549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50557e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50569566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50577e63b356SHong Zhang } else { 50589566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50597e63b356SHong Zhang } 50609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50627e63b356SHong Zhang } 50639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 506448a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50659566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506855d1abb9SHong Zhang } 50694ebed01fSBarry Smith 5070bc08b0f1SBarry Smith /*@ 50712920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50728a9c020eSBarry Smith 50738a9c020eSBarry Smith Not Collective 50748a9c020eSBarry Smith 50752fe279fdSBarry Smith Input Parameter: 507620f4b53cSBarry Smith . A - the matrix 50778a9c020eSBarry Smith 50788a9c020eSBarry Smith Output Parameter: 50798a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50808a9c020eSBarry Smith 50818a9c020eSBarry Smith Level: developer 50828a9c020eSBarry Smith 50838a9c020eSBarry Smith Notes: 50842920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 50852920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 50862920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 50872920cce0SJacob Faibussowitsch 508811a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 50898a9c020eSBarry Smith 50902920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 50912920cce0SJacob Faibussowitsch 509211a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 50938a9c020eSBarry Smith 50941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 50958a9c020eSBarry Smith @*/ 5096d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5097d71ae5a4SJacob Faibussowitsch { 50988a9c020eSBarry Smith PetscBool mpi; 50998a9c020eSBarry Smith 51008a9c020eSBarry Smith PetscFunctionBegin; 51018a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51028a9c020eSBarry Smith if (mpi) { 51038a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51048a9c020eSBarry Smith } else { 51058a9c020eSBarry Smith *A_loc = A; 51068a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51078a9c020eSBarry Smith } 51083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51098a9c020eSBarry Smith } 51108a9c020eSBarry Smith 51118a9c020eSBarry Smith /*@ 51122920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 511325616d81SHong Zhang 511432fba14fSHong Zhang Not Collective 511525616d81SHong Zhang 511625616d81SHong Zhang Input Parameters: 511725616d81SHong Zhang + A - the matrix 511811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 511925616d81SHong Zhang 512025616d81SHong Zhang Output Parameter: 512125616d81SHong Zhang . A_loc - the local sequential matrix generated 512225616d81SHong Zhang 512325616d81SHong Zhang Level: developer 512425616d81SHong Zhang 512577c65a98SStefano Zampini Notes: 51262920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51272920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51282920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51292920cce0SJacob Faibussowitsch 513011a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51318a9c020eSBarry Smith 51322920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51332920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51342920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51352920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 513677c65a98SStefano Zampini 51371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 513825616d81SHong Zhang @*/ 5139d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5140d71ae5a4SJacob Faibussowitsch { 514101b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5142b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5143b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5144ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5145ce496241SStefano Zampini PetscScalar *ca, *cam; 514677c65a98SStefano Zampini PetscMPIInt size; 5147d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51485a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51498661ff28SBarry Smith PetscBool match; 515025616d81SHong Zhang 515125616d81SHong Zhang PetscFunctionBegin; 51529566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 515328b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 515577c65a98SStefano Zampini if (size == 1) { 515677c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51579566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 515877c65a98SStefano Zampini *A_loc = mpimat->A; 515977c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51609566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 516177c65a98SStefano Zampini } 51623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 516377c65a98SStefano Zampini } 516470a9ba44SHong Zhang 51659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5166f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5167f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 51689371c9d4SSatish Balay ai = a->i; 51699371c9d4SSatish Balay aj = a->j; 51709371c9d4SSatish Balay bi = b->i; 51719371c9d4SSatish Balay bj = b->j; 51729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5174ce496241SStefano Zampini aa = aav; 5175ce496241SStefano Zampini ba = bav; 517601b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5178dea91ad1SHong Zhang ci[0] = 0; 5179ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5182dea91ad1SHong Zhang k = 0; 518301b7ae99SHong Zhang for (i = 0; i < am; i++) { 51845a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 51855a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 518601b7ae99SHong Zhang /* off-diagonal portion of A */ 51875a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 51885a7d977cSHong Zhang col = cmap[*bj]; 51895a7d977cSHong Zhang if (col >= cstart) break; 51909371c9d4SSatish Balay cj[k] = col; 51919371c9d4SSatish Balay bj++; 51925a7d977cSHong Zhang ca[k++] = *ba++; 51935a7d977cSHong Zhang } 51945a7d977cSHong Zhang /* diagonal portion of A */ 51955a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 51965a7d977cSHong Zhang cj[k] = cstart + *aj++; 51975a7d977cSHong Zhang ca[k++] = *aa++; 51985a7d977cSHong Zhang } 51995a7d977cSHong Zhang /* off-diagonal portion of A */ 52005a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52015a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52025a7d977cSHong Zhang ca[k++] = *ba++; 52035a7d977cSHong Zhang } 520425616d81SHong Zhang } 5205dea91ad1SHong Zhang /* put together the new matrix */ 52069566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5207dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5208dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5209dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5210e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5211e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5212dea91ad1SHong Zhang mat->nonew = 0; 52135a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52145a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5215fff043a9SJunchao Zhang ci = mat->i; 5216fff043a9SJunchao Zhang cj = mat->j; 52179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52185a7d977cSHong Zhang for (i = 0; i < am; i++) { 52195a7d977cSHong Zhang /* off-diagonal portion of A */ 52205a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52215a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52225a7d977cSHong Zhang col = cmap[*bj]; 52235a7d977cSHong Zhang if (col >= cstart) break; 52249371c9d4SSatish Balay *cam++ = *ba++; 52259371c9d4SSatish Balay bj++; 52265a7d977cSHong Zhang } 52275a7d977cSHong Zhang /* diagonal portion of A */ 5228ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5229a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52305a7d977cSHong Zhang /* off-diagonal portion of A */ 5231f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52329371c9d4SSatish Balay *cam++ = *ba++; 52339371c9d4SSatish Balay bj++; 5234f33d1a9aSHong Zhang } 52355a7d977cSHong Zhang } 52369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 523798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52409566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 524225616d81SHong Zhang } 524325616d81SHong Zhang 5244ed502f03SStefano Zampini /*@ 524511a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52464cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5247ed502f03SStefano Zampini 5248ed502f03SStefano Zampini Not Collective 5249ed502f03SStefano Zampini 5250ed502f03SStefano Zampini Input Parameters: 5251ed502f03SStefano Zampini + A - the matrix 525211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5253ed502f03SStefano Zampini 5254d8d19677SJose E. Roman Output Parameters: 52552ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5256ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5257ed502f03SStefano Zampini 5258ed502f03SStefano Zampini Level: developer 5259ed502f03SStefano Zampini 526011a5261eSBarry Smith Note: 52612ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52624cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5263ed502f03SStefano Zampini 52641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5265ed502f03SStefano Zampini @*/ 5266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5267d71ae5a4SJacob Faibussowitsch { 5268ed502f03SStefano Zampini Mat Ao, Ad; 5269ed502f03SStefano Zampini const PetscInt *cmap; 5270ed502f03SStefano Zampini PetscMPIInt size; 5271ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5272ed502f03SStefano Zampini 5273ed502f03SStefano Zampini PetscFunctionBegin; 52749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5276ed502f03SStefano Zampini if (size == 1) { 5277ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52789566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5279ed502f03SStefano Zampini *A_loc = Ad; 5280ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52819566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5282ed502f03SStefano Zampini } 52839566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5285ed502f03SStefano Zampini } 52869566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 52879566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5288ed502f03SStefano Zampini if (f) { 52899566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5290ed502f03SStefano Zampini } else { 5291ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5292ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5293ed502f03SStefano Zampini Mat_SeqAIJ *c; 5294ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5295ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5296ed502f03SStefano Zampini PetscInt *ci, *cj; 5297ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5298ed502f03SStefano Zampini PetscScalar *ca; 5299ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5300ed502f03SStefano Zampini 53019566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5305ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5306ed502f03SStefano Zampini PetscInt k; 53079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5310ed502f03SStefano Zampini ci[0] = 0; 5311ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5312ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5313ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5314ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5315ed502f03SStefano Zampini /* diagonal portion of A */ 5316ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5317ed502f03SStefano Zampini cj[k] = *aj++; 5318ed502f03SStefano Zampini ca[k] = *aa++; 5319ed502f03SStefano Zampini } 5320ed502f03SStefano Zampini /* off-diagonal portion of A */ 5321ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5322ed502f03SStefano Zampini cj[k] = dn + *bj++; 5323ed502f03SStefano Zampini ca[k] = *ba++; 5324ed502f03SStefano Zampini } 5325ed502f03SStefano Zampini } 5326ed502f03SStefano Zampini /* put together the new matrix */ 53279566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5328ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5329ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5330ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5331ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5332ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5333ed502f03SStefano Zampini c->nonew = 0; 53349566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5335ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5337ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5338ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5339ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5340ed502f03SStefano Zampini /* diagonal portion of A */ 5341ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5342ed502f03SStefano Zampini /* off-diagonal portion of A */ 5343ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5344ed502f03SStefano Zampini } 53459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 534698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5349ed502f03SStefano Zampini if (glob) { 5350ed502f03SStefano Zampini PetscInt cst, *gidx; 5351ed502f03SStefano Zampini 53529566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5354ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5355ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53569566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5357ed502f03SStefano Zampini } 5358ed502f03SStefano Zampini } 53599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5361ed502f03SStefano Zampini } 5362ed502f03SStefano Zampini 536332fba14fSHong Zhang /*@C 536411a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 536532fba14fSHong Zhang 536632fba14fSHong Zhang Not Collective 536732fba14fSHong Zhang 536832fba14fSHong Zhang Input Parameters: 536932fba14fSHong Zhang + A - the matrix 537011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 537120f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 537220f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 537332fba14fSHong Zhang 537432fba14fSHong Zhang Output Parameter: 537532fba14fSHong Zhang . A_loc - the local sequential matrix generated 537632fba14fSHong Zhang 537732fba14fSHong Zhang Level: developer 537832fba14fSHong Zhang 53791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 538032fba14fSHong Zhang @*/ 5381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5382d71ae5a4SJacob Faibussowitsch { 538332fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 538432fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 538532fba14fSHong Zhang IS isrowa, iscola; 538632fba14fSHong Zhang Mat *aloc; 53874a2b5492SBarry Smith PetscBool match; 538832fba14fSHong Zhang 538932fba14fSHong Zhang PetscFunctionBegin; 53909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 539128b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 53929566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 539332fba14fSHong Zhang if (!row) { 53949371c9d4SSatish Balay start = A->rmap->rstart; 53959371c9d4SSatish Balay end = A->rmap->rend; 53969566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 539732fba14fSHong Zhang } else { 539832fba14fSHong Zhang isrowa = *row; 539932fba14fSHong Zhang } 540032fba14fSHong Zhang if (!col) { 5401d0f46423SBarry Smith start = A->cmap->rstart; 540232fba14fSHong Zhang cmap = a->garray; 5403d0f46423SBarry Smith nzA = a->A->cmap->n; 5404d0f46423SBarry Smith nzB = a->B->cmap->n; 54059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 540632fba14fSHong Zhang ncols = 0; 540732fba14fSHong Zhang for (i = 0; i < nzB; i++) { 540832fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 540932fba14fSHong Zhang else break; 541032fba14fSHong Zhang } 541132fba14fSHong Zhang imark = i; 541232fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 541332fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 541532fba14fSHong Zhang } else { 541632fba14fSHong Zhang iscola = *col; 541732fba14fSHong Zhang } 541832fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 542032fba14fSHong Zhang aloc[0] = *A_loc; 542132fba14fSHong Zhang } 54229566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5423109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5425109e0772SStefano Zampini } 542632fba14fSHong Zhang *A_loc = aloc[0]; 54279566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 542848a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 542948a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 543232fba14fSHong Zhang } 543332fba14fSHong Zhang 54345c65b9ecSFande Kong /* 54355c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54365c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54375c65b9ecSFande Kong * on a global size. 54385c65b9ecSFande Kong * */ 5439ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5440d71ae5a4SJacob Faibussowitsch { 54415c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5442f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5443131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5444131c27b5Sprj- PetscMPIInt owner; 54455c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54465c65b9ecSFande Kong const PetscInt *lrowindices; 54475c65b9ecSFande Kong PetscSF sf, osf; 54485c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54495c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54505c65b9ecSFande Kong MPI_Comm comm; 54515c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5452fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54535c65b9ecSFande Kong 54545c65b9ecSFande Kong PetscFunctionBegin; 54559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54565c65b9ecSFande Kong /* plocalsize is the number of roots 54575c65b9ecSFande Kong * nrows is the number of leaves 54585c65b9ecSFande Kong * */ 54599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54619566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54635c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54645c65b9ecSFande Kong /* Find a remote index and an owner for a row 54655c65b9ecSFande Kong * The row could be local or remote 54665c65b9ecSFande Kong * */ 546734bcad68SFande Kong owner = 0; 546834bcad68SFande Kong lidx = 0; 54699566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54705c65b9ecSFande Kong iremote[i].index = lidx; 54715c65b9ecSFande Kong iremote[i].rank = owner; 54725c65b9ecSFande Kong } 54735c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54749566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5475f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54765c65b9ecSFande Kong * offsets 54775c65b9ecSFande Kong * */ 54789566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54799566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54809566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5481bc8e477aSFande Kong 54829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54849566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 54855c65b9ecSFande Kong roffsets[0] = 0; 54865c65b9ecSFande Kong roffsets[1] = 0; 54875c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 54884cf0e950SBarry Smith /* diagonal */ 54895c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 54904cf0e950SBarry Smith /* off-diagonal */ 54915c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 54925c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 54935c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 54945c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 54955c65b9ecSFande Kong } 54969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 54979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 54985c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 54999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55039566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55049566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55059566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55065c65b9ecSFande Kong dntotalcols = 0; 55075c65b9ecSFande Kong ontotalcols = 0; 5508bc8e477aSFande Kong ncol = 0; 55095c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55105c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5511bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55124cf0e950SBarry Smith /* diagonal */ 55135c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55144cf0e950SBarry Smith /* off-diagonal */ 55155c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55165c65b9ecSFande Kong } 55175c65b9ecSFande Kong /* We do not need to figure the right number of columns 55185c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55195c65b9ecSFande Kong * */ 55209566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55219566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55229566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55235c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55244cf0e950SBarry Smith /* diagonal */ 55259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55264cf0e950SBarry Smith /* off-diagonal */ 55279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55284cf0e950SBarry Smith /* diagonal */ 55299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55304cf0e950SBarry Smith /* off-diagonal */ 55319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55325c65b9ecSFande Kong dntotalcols = 0; 55335c65b9ecSFande Kong ontotalcols = 0; 55345c65b9ecSFande Kong ntotalcols = 0; 55355c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 553634bcad68SFande Kong owner = 0; 55379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55385c65b9ecSFande Kong /* Set iremote for diag matrix */ 55395c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55405c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55415c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55425c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55435c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55445c65b9ecSFande Kong } 55454cf0e950SBarry Smith /* off-diagonal */ 55465c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55475c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55485c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55495c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55505c65b9ecSFande Kong } 55515c65b9ecSFande Kong } 55529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55539566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55549566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55559566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55565c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55575c65b9ecSFande Kong * Diag matrix 55585c65b9ecSFande Kong * */ 55599566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55609566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55619566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55625c65b9ecSFande Kong 55639566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55644cf0e950SBarry Smith /* off-diagonal */ 55659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55669566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55679566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55704cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55745c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55755c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55775c65b9ecSFande Kong /* We want P_oth store global indices */ 55789566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55795c65b9ecSFande Kong /* Use memory scalable approach */ 55809566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55819566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55845c65b9ecSFande Kong /* Convert back to local indices */ 55855c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 55869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55875c65b9ecSFande Kong nout = 0; 55889566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 558908401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 55909566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 55915c65b9ecSFande Kong /* Exchange values */ 55929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 55959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 55965c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 55975c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 55989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 55999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56005c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56019566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56029566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56039566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56049566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56065c65b9ecSFande Kong } 56075c65b9ecSFande Kong 56085c65b9ecSFande Kong /* 56095c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56105c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56115c65b9ecSFande Kong * */ 5612d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5613d71ae5a4SJacob Faibussowitsch { 56145c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5615bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5616bc8e477aSFande Kong IS rows, map; 5617bc8e477aSFande Kong PetscHMapI hamp; 5618bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56195c65b9ecSFande Kong MPI_Comm comm; 56205c65b9ecSFande Kong PetscSF sf, osf; 5621bc8e477aSFande Kong PetscBool has; 56225c65b9ecSFande Kong 56235c65b9ecSFande Kong PetscFunctionBegin; 56249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56265c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56275c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56285c65b9ecSFande Kong * */ 56295c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56305c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5631eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5633bc8e477aSFande Kong count = 0; 5634bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5635bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5636bc8e477aSFande Kong key = a->garray[i] / dof; 56379566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5638bc8e477aSFande Kong if (!has) { 5639bc8e477aSFande Kong mapping[i] = count; 56409566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5641bc8e477aSFande Kong } else { 5642bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5643bc8e477aSFande Kong mapping[i] = count - 1; 56445c65b9ecSFande Kong } 5645bc8e477aSFande Kong } 56469566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56479566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5648eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56505c65b9ecSFande Kong off = 0; 56519566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56529566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56539566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56549566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56555c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56569566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56579566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56589566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56615c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56625c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 566335cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5664fff043a9SJunchao Zhang */ 5665fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5666fff043a9SJunchao Zhang 56679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 566908401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56705c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56715c65b9ecSFande Kong /* Update values in place */ 56729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56749566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56806718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56835c65b9ecSFande Kong } 56845c65b9ecSFande Kong 568525616d81SHong Zhang /*@C 568620f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 568725616d81SHong Zhang 5688c3339decSBarry Smith Collective 568925616d81SHong Zhang 569025616d81SHong Zhang Input Parameters: 569111a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 569211a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 569311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 569425616d81SHong Zhang 5695f1a722f8SMatthew G. Knepley Output Parameters: 569627430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 569727430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5698f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 569925616d81SHong Zhang 570025616d81SHong Zhang Level: developer 570125616d81SHong Zhang 570220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 570325616d81SHong Zhang @*/ 5704d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5705d71ae5a4SJacob Faibussowitsch { 5706899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5707b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 570825616d81SHong Zhang IS isrowb, iscolb; 57090298fd71SBarry Smith Mat *bseq = NULL; 571025616d81SHong Zhang 571125616d81SHong Zhang PetscFunctionBegin; 571220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 571320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 571525616d81SHong Zhang 571625616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5717d0f46423SBarry Smith start = A->cmap->rstart; 571825616d81SHong Zhang cmap = a->garray; 5719d0f46423SBarry Smith nzA = a->A->cmap->n; 5720d0f46423SBarry Smith nzB = a->B->cmap->n; 57219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 572225616d81SHong Zhang ncols = 0; 57230390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 572425616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 572525616d81SHong Zhang else break; 572625616d81SHong Zhang } 572725616d81SHong Zhang imark = i; 57280390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57290390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 573225616d81SHong Zhang } else { 573308401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57349371c9d4SSatish Balay isrowb = *rowb; 57359371c9d4SSatish Balay iscolb = *colb; 57369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 573725616d81SHong Zhang bseq[0] = *B_seq; 573825616d81SHong Zhang } 57399566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 574025616d81SHong Zhang *B_seq = bseq[0]; 57419566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 574225616d81SHong Zhang if (!rowb) { 57439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 574425616d81SHong Zhang } else { 574525616d81SHong Zhang *rowb = isrowb; 574625616d81SHong Zhang } 574725616d81SHong Zhang if (!colb) { 57489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 574925616d81SHong Zhang } else { 575025616d81SHong Zhang *colb = iscolb; 575125616d81SHong Zhang } 57529566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 575425616d81SHong Zhang } 5755429d309bSHong Zhang 5756f8487c73SHong Zhang /* 575727430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 575801b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5759429d309bSHong Zhang 5760c3339decSBarry Smith Collective 5761429d309bSHong Zhang 5762429d309bSHong Zhang Input Parameters: 576327430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 576427430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5765429d309bSHong Zhang 5766429d309bSHong Zhang Output Parameter: 57670298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57680298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57690298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5770598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5771429d309bSHong Zhang 577211a5261eSBarry Smith Developer Note: 577311a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57746eb45d04SBarry Smith for this matrix. This is not desirable.. 57756eb45d04SBarry Smith 5776429d309bSHong Zhang Level: developer 5777429d309bSHong Zhang 5778f8487c73SHong Zhang */ 57796497c311SBarry Smith 5780d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5781d71ae5a4SJacob Faibussowitsch { 5782899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 57834b8d542aSHong Zhang VecScatter ctx; 5784ce94432eSBarry Smith MPI_Comm comm; 57853515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 57866497c311SBarry Smith PetscMPIInt nrecvs, nsends; 57873515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5788277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 57896497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5790277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5791ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5792ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5793429d309bSHong Zhang 5794429d309bSHong Zhang PetscFunctionBegin; 57959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5797a7c7454dSHong Zhang 579820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 579920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5802a6b2eed2SHong Zhang 5803ec07b8f8SHong Zhang if (size == 1) { 5804ec07b8f8SHong Zhang startsj_s = NULL; 5805ec07b8f8SHong Zhang bufa_ptr = NULL; 580652f7967eSHong Zhang *B_oth = NULL; 58073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5808ec07b8f8SHong Zhang } 5809ec07b8f8SHong Zhang 5810fa83eaafSHong Zhang ctx = a->Mvctx; 58114b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58124b8d542aSHong Zhang 58139566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58143515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58159566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58169566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5818ddea5d60SJunchao Zhang rwaits = reqs; 58198e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5820429d309bSHong Zhang 5821b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5822429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5823a6b2eed2SHong Zhang /* i-array */ 5824a6b2eed2SHong Zhang /* post receives */ 58259566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5826a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 582774268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5828e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58296497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5830429d309bSHong Zhang } 5831a6b2eed2SHong Zhang 5832a6b2eed2SHong Zhang /* pack the outgoing message */ 58339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58342205254eSKarl Rupp 58352205254eSKarl Rupp sstartsj[0] = 0; 58362205254eSKarl Rupp rstartsj[0] = 0; 5837a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58383515ee7fSJunchao Zhang if (nsends) { 58393515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58413515ee7fSJunchao Zhang } 5842a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58433515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5844e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 584587025532SHong Zhang for (j = 0; j < nrows; j++) { 5846d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5847e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58489566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58492205254eSKarl Rupp 5850e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58512205254eSKarl Rupp 5852e42f35eeSHong Zhang len += ncols; 58539566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5854e42f35eeSHong Zhang } 5855a6b2eed2SHong Zhang k++; 5856429d309bSHong Zhang } 58576497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58582205254eSKarl Rupp 5859dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5860429d309bSHong Zhang } 586187025532SHong Zhang /* recvs and sends of i-array are completed */ 58629566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58639566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5864e42f35eeSHong Zhang 5865a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 58669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 58679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5868a6b2eed2SHong Zhang 586987025532SHong Zhang /* create i-array of B_oth */ 58709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 58712205254eSKarl Rupp 587287025532SHong Zhang b_othi[0] = 0; 5873a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5874a6b2eed2SHong Zhang k = 0; 5875a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58763515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58773515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 587887025532SHong Zhang for (j = 0; j < nrows; j++) { 587987025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58809566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5881f91af8c7SBarry Smith k++; 5882a6b2eed2SHong Zhang } 5883dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5884a6b2eed2SHong Zhang } 58859566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5886a6b2eed2SHong Zhang 58876aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 58889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 58899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5890a6b2eed2SHong Zhang 589187025532SHong Zhang /* j-array */ 5892a6b2eed2SHong Zhang /* post receives of j-array */ 5893a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 589487025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 58956497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5896a6b2eed2SHong Zhang } 5897e42f35eeSHong Zhang 5898e42f35eeSHong Zhang /* pack the outgoing message j-array */ 58993515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5900a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5901e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5902a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 590387025532SHong Zhang for (j = 0; j < nrows; j++) { 5904d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5905e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59069566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5907ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59089566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5909e42f35eeSHong Zhang } 591087025532SHong Zhang } 59116497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 591287025532SHong Zhang } 591387025532SHong Zhang 591487025532SHong Zhang /* recvs and sends of j-array are completed */ 59159566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 591687025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5917b7f45c76SHong Zhang sstartsj = *startsj_s; 59181d79065fSBarry Smith rstartsj = *startsj_r; 591987025532SHong Zhang bufa = *bufa_ptr; 59209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5921ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 592287025532SHong Zhang 592387025532SHong Zhang /* a-array */ 592487025532SHong Zhang /* post receives of a-array */ 592587025532SHong Zhang for (i = 0; i < nrecvs; i++) { 592687025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59276497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 592887025532SHong Zhang } 5929e42f35eeSHong Zhang 5930e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59313515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 593287025532SHong Zhang for (i = 0; i < nsends; i++) { 5933e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 593487025532SHong Zhang bufA = bufa + sstartsj[i]; 593587025532SHong Zhang for (j = 0; j < nrows; j++) { 5936d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5937e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59389566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5939ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59409566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5941e42f35eeSHong Zhang } 5942a6b2eed2SHong Zhang } 59436497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5944a6b2eed2SHong Zhang } 594587025532SHong Zhang /* recvs and sends of a-array are completed */ 59469566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59479566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5948a6b2eed2SHong Zhang 594987025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5950dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5951dd460d27SBarry Smith 5952a6b2eed2SHong Zhang /* put together the new matrix */ 59539566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5954a6b2eed2SHong Zhang 5955a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5956a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 595787025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5958e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5959e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 596087025532SHong Zhang b_oth->nonew = 0; 5961a6b2eed2SHong Zhang 59629566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5963b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59649566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59659566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5966dea91ad1SHong Zhang } else { 5967b7f45c76SHong Zhang *startsj_s = sstartsj; 59681d79065fSBarry Smith *startsj_r = rstartsj; 596987025532SHong Zhang *bufa_ptr = bufa; 597087025532SHong Zhang } 5971fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5973dea91ad1SHong Zhang } 59743515ee7fSJunchao Zhang 59759566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59769566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59779566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5979429d309bSHong Zhang } 5980ccd8e176SBarry Smith 5981cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5982cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5983ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59849779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5985a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5986191b95cbSRichard Tran Mills #endif 5987ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 5988cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 59895d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5990cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 59915d7652ecSHong Zhang #endif 5992d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5993d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 5994d24d4204SJose E. Roman #endif 599563c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 599663c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 599763c07aadSStefano Zampini #endif 59983338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 59993338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60003338378cSStefano Zampini #endif 6001d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6002d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6003d5e393b6SSuyash Tandon #endif 60043d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60053d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60063d0639e7SStefano Zampini #endif 6007d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60084222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60094222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 601017667f90SBarry Smith 6011fc4dec0aSBarry Smith /* 6012fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6013fc4dec0aSBarry Smith 6014fc4dec0aSBarry Smith n p p 60152da392ccSBarry Smith [ ] [ ] [ ] 60162da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60172da392ccSBarry Smith [ ] [ ] [ ] 6018fc4dec0aSBarry Smith 6019fc4dec0aSBarry Smith */ 6020d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6021d71ae5a4SJacob Faibussowitsch { 6022fc4dec0aSBarry Smith Mat At, Bt, Ct; 6023fc4dec0aSBarry Smith 6024fc4dec0aSBarry Smith PetscFunctionBegin; 60259566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60269566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6027fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60289566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60307fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60319566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6034fc4dec0aSBarry Smith } 6035fc4dec0aSBarry Smith 6036d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6037d71ae5a4SJacob Faibussowitsch { 60386718818eSStefano Zampini PetscBool cisdense; 6039fc4dec0aSBarry Smith 6040fc4dec0aSBarry Smith PetscFunctionBegin; 604108401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6044d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 604548a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60469566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6047f75ecaa4SHong Zhang 60484222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6050fc4dec0aSBarry Smith } 6051fc4dec0aSBarry Smith 6052d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6053d71ae5a4SJacob Faibussowitsch { 60544222ddf1SHong Zhang Mat_Product *product = C->product; 60554222ddf1SHong Zhang Mat A = product->A, B = product->B; 6056fc4dec0aSBarry Smith 6057fc4dec0aSBarry Smith PetscFunctionBegin; 605820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 605920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60604222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60614222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6063fc4dec0aSBarry Smith } 6064fc4dec0aSBarry Smith 6065d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6066d71ae5a4SJacob Faibussowitsch { 60674222ddf1SHong Zhang Mat_Product *product = C->product; 60684222ddf1SHong Zhang 60694222ddf1SHong Zhang PetscFunctionBegin; 607048a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60724222ddf1SHong Zhang } 6073394ed5ebSJunchao Zhang 607427430b45SBarry Smith /* 607527430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6076394ed5ebSJunchao Zhang 6077394ed5ebSJunchao Zhang Input Parameters: 6078394ed5ebSJunchao Zhang 6079651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6080651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6081394ed5ebSJunchao Zhang 6082158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6083394ed5ebSJunchao Zhang 6084394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6085394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6086394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6087394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6088394ed5ebSJunchao Zhang 6089394ed5ebSJunchao Zhang Similar for Set2. 6090394ed5ebSJunchao Zhang 6091394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6092394ed5ebSJunchao Zhang 6093158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6094394ed5ebSJunchao Zhang 6095394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6096394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6097394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6098394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6099394ed5ebSJunchao Zhang */ 6100d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6101d71ae5a4SJacob Faibussowitsch { 6102394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6103394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6104394ed5ebSJunchao Zhang 6105394ed5ebSJunchao Zhang PetscFunctionBegin; 61069566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6107394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6108394ed5ebSJunchao Zhang i[0] = 0; 6109394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6110394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6111394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6112394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6113394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6114394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6115394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6116394ed5ebSJunchao Zhang j[t] = j1[b1]; 6117394ed5ebSJunchao Zhang imap1[t1] = t; 6118394ed5ebSJunchao Zhang imap2[t2] = t; 6119394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6120394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61219371c9d4SSatish Balay t1++; 61229371c9d4SSatish Balay t2++; 61239371c9d4SSatish Balay t++; 6124394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6125394ed5ebSJunchao Zhang j[t] = j1[b1]; 6126394ed5ebSJunchao Zhang imap1[t1] = t; 6127394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61289371c9d4SSatish Balay t1++; 61299371c9d4SSatish Balay t++; 6130394ed5ebSJunchao Zhang } else { 6131394ed5ebSJunchao Zhang j[t] = j2[b2]; 6132394ed5ebSJunchao Zhang imap2[t2] = t; 6133394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61349371c9d4SSatish Balay t2++; 61359371c9d4SSatish Balay t++; 6136394ed5ebSJunchao Zhang } 6137394ed5ebSJunchao Zhang } 6138394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6139394ed5ebSJunchao Zhang while (b1 < e1) { 6140394ed5ebSJunchao Zhang j[t] = j1[b1]; 6141394ed5ebSJunchao Zhang imap1[t1] = t; 6142394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61439371c9d4SSatish Balay t1++; 61449371c9d4SSatish Balay t++; 6145394ed5ebSJunchao Zhang } 6146394ed5ebSJunchao Zhang while (b2 < e2) { 6147394ed5ebSJunchao Zhang j[t] = j2[b2]; 6148394ed5ebSJunchao Zhang imap2[t2] = t; 6149394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61509371c9d4SSatish Balay t2++; 61519371c9d4SSatish Balay t++; 6152394ed5ebSJunchao Zhang } 61536497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6154394ed5ebSJunchao Zhang } 61553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6156394ed5ebSJunchao Zhang } 6157394ed5ebSJunchao Zhang 615827430b45SBarry Smith /* 615927430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6160394ed5ebSJunchao Zhang 6161394ed5ebSJunchao Zhang Input Parameters: 6162394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6163394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6164394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6165394ed5ebSJunchao Zhang 6166394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6167394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6168394ed5ebSJunchao Zhang 6169394ed5ebSJunchao Zhang Output Parameters: 6170394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6171394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6172394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6173394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6174394ed5ebSJunchao Zhang 6175394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6176158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6177158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6178394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6179394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6180394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6181394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6182394ed5ebSJunchao Zhang 6183394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6184394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6185394ed5ebSJunchao Zhang 6186394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6187394ed5ebSJunchao Zhang 6188158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6189394ed5ebSJunchao Zhang */ 6190d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6191d71ae5a4SJacob Faibussowitsch { 6192394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6193394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6194394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6195394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6196394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6197394ed5ebSJunchao Zhang 6198394ed5ebSJunchao Zhang PetscFunctionBegin; 61999566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62009566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6201394ed5ebSJunchao Zhang m = rend - rstart; 6202394ed5ebSJunchao Zhang 6203651b1cf9SStefano Zampini /* Skip negative rows */ 6204651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62059371c9d4SSatish Balay if (i[k] >= 0) break; 6206394ed5ebSJunchao Zhang 6207394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6208394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6209394ed5ebSJunchao Zhang */ 6210394ed5ebSJunchao Zhang while (k < n) { 6211394ed5ebSJunchao Zhang row = i[k]; 6212394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62139371c9d4SSatish Balay for (s = k; s < n; s++) 62149371c9d4SSatish Balay if (i[s] != row) break; 6215651b1cf9SStefano Zampini 62161690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6217394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62181690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 6219394ed5ebSJunchao Zhang } 62209566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6221158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6222394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6223394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6224394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 62258551dd9cSJunchao Zhang PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N); 6226394ed5ebSJunchao Zhang 6227394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6228394ed5ebSJunchao Zhang Atot += mid - k; 6229394ed5ebSJunchao Zhang Btot += s - mid; 6230394ed5ebSJunchao Zhang 6231651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6232394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6233394ed5ebSJunchao Zhang col = j[p]; 62349371c9d4SSatish Balay do { 62351690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62369371c9d4SSatish Balay p++; 6237651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6238394ed5ebSJunchao Zhang Annz++; 6239394ed5ebSJunchao Zhang } 6240394ed5ebSJunchao Zhang 6241651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6242394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6243394ed5ebSJunchao Zhang col = j[p]; 6244d71ae5a4SJacob Faibussowitsch do { 6245d71ae5a4SJacob Faibussowitsch p++; 6246d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6247394ed5ebSJunchao Zhang Bnnz++; 6248394ed5ebSJunchao Zhang } 6249394ed5ebSJunchao Zhang k = s; 6250394ed5ebSJunchao Zhang } 6251394ed5ebSJunchao Zhang 6252394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6253158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6254158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6255158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6256158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6257394ed5ebSJunchao Zhang 62586aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6259394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6260394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6261394ed5ebSJunchao Zhang k = rowBegin[r]; 6262394ed5ebSJunchao Zhang mid = rowMid[r]; 6263394ed5ebSJunchao Zhang s = rowEnd[r]; 62648e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 62658e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6266394ed5ebSJunchao Zhang Atot += mid - k; 6267394ed5ebSJunchao Zhang Btot += s - mid; 6268394ed5ebSJunchao Zhang 6269394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6270394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6271394ed5ebSJunchao Zhang col = j[p]; 6272394ed5ebSJunchao Zhang q = p; 6273d71ae5a4SJacob Faibussowitsch do { 6274d71ae5a4SJacob Faibussowitsch p++; 6275d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6276394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6277394ed5ebSJunchao Zhang Annz++; 6278394ed5ebSJunchao Zhang } 6279394ed5ebSJunchao Zhang 6280394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6281394ed5ebSJunchao Zhang col = j[p]; 6282394ed5ebSJunchao Zhang q = p; 6283d71ae5a4SJacob Faibussowitsch do { 6284d71ae5a4SJacob Faibussowitsch p++; 6285d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6286394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6287394ed5ebSJunchao Zhang Bnnz++; 6288394ed5ebSJunchao Zhang } 6289394ed5ebSJunchao Zhang } 6290394ed5ebSJunchao Zhang /* Output */ 6291394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6292394ed5ebSJunchao Zhang *Annz_ = Annz; 6293394ed5ebSJunchao Zhang *Atot_ = Atot; 6294394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6295394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6296394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6297394ed5ebSJunchao Zhang *Btot_ = Btot; 6298394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 62993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6300394ed5ebSJunchao Zhang } 6301394ed5ebSJunchao Zhang 630227430b45SBarry Smith /* 630327430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6304158ec288SJunchao Zhang 6305158ec288SJunchao Zhang Input Parameters: 6306158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6307158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6308158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6309651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6310158ec288SJunchao Zhang 6311158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6312158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6313158ec288SJunchao Zhang 6314158ec288SJunchao Zhang Example: 6315158ec288SJunchao Zhang nnz1 = 4 6316158ec288SJunchao Zhang nnz = 6 6317158ec288SJunchao Zhang imap = [1,3,4,5] 6318158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6319158ec288SJunchao Zhang then, 6320158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6321158ec288SJunchao Zhang */ 6322d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6323d71ae5a4SJacob Faibussowitsch { 6324158ec288SJunchao Zhang PetscCount k, p; 6325158ec288SJunchao Zhang 6326158ec288SJunchao Zhang PetscFunctionBegin; 6327158ec288SJunchao Zhang jmap_new[0] = 0; 6328158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6329158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6330158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6331158ec288SJunchao Zhang } 6332158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6334158ec288SJunchao Zhang } 6335158ec288SJunchao Zhang 633649abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63372c4ab24aSJunchao Zhang { 633849abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63392c4ab24aSJunchao Zhang 63402c4ab24aSJunchao Zhang PetscFunctionBegin; 63412c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63422c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63432c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63442c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63452c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63462c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63472c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63482c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63492c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63502c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63512c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63522c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63532c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63542c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63552c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63562c4ab24aSJunchao Zhang } 63572c4ab24aSJunchao Zhang 6358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6359d71ae5a4SJacob Faibussowitsch { 6360394ed5ebSJunchao Zhang MPI_Comm comm; 6361394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6362394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6363394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6364394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63652c4ab24aSJunchao Zhang PetscContainer container; 63662c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6367394ed5ebSJunchao Zhang 6368394ed5ebSJunchao Zhang PetscFunctionBegin; 63699566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6371cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6372eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6373cbc6b225SStefano Zampini #else 63749566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6375cbc6b225SStefano Zampini #endif 63769566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6377cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6378cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6379cbc6b225SStefano Zampini 63809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63869566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 63879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 63889566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6389394ed5ebSJunchao Zhang 63906aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6391394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6392394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6393e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6394e8729f6fSJunchao Zhang 6395e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6396394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6397394ed5ebSJunchao Zhang 6398394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6399394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6400394ed5ebSJunchao Zhang will have positive row indices. 6401394ed5ebSJunchao Zhang */ 6402394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64031690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64041690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6405f7d195e4SLawrence Mitchell else { 6406f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64071690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6408f7d195e4SLawrence Mitchell } 6409394ed5ebSJunchao Zhang } 6410394ed5ebSJunchao Zhang 6411da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64129566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6413651b1cf9SStefano Zampini 6414651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6415651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64161690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64176497c311SBarry Smith PetscCount i1start = k; 6418651b1cf9SStefano Zampini 64191690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64201690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6421394ed5ebSJunchao Zhang 64228551dd9cSJunchao Zhang PetscCheck(i1 == NULL || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M); 64238551dd9cSJunchao Zhang 6424394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6425394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6426394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6427394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6428394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6429394ed5ebSJunchao Zhang const PetscInt *ranges; 6430394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6431394ed5ebSJunchao Zhang 64329566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6434394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6435394ed5ebSJunchao Zhang PetscMPIInt owner; 6436394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6437cbc6b225SStefano Zampini 6438394ed5ebSJunchao Zhang /* Locate a row range */ 6439394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64409566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6441394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6442394ed5ebSJunchao Zhang 64438551dd9cSJunchao Zhang /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */ 64449566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6445394ed5ebSJunchao Zhang 6446394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6447394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6448394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6449394ed5ebSJunchao Zhang PetscInt *nentries2; 6450394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6451cbc6b225SStefano Zampini 64529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64539566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64549566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64559566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6456394ed5ebSJunchao Zhang sendto = sendto2; 6457394ed5ebSJunchao Zhang nentries = nentries2; 6458394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6459394ed5ebSJunchao Zhang } 6460394ed5ebSJunchao Zhang sendto[nsend] = owner; 64616497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6462394ed5ebSJunchao Zhang nsend++; 6463394ed5ebSJunchao Zhang k = p; 6464394ed5ebSJunchao Zhang } 6465394ed5ebSJunchao Zhang 6466394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6467394ed5ebSJunchao Zhang PetscSF sf1; 6468394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6469394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6470394ed5ebSJunchao Zhang PetscInt *offsets; 6471394ed5ebSJunchao Zhang PetscSFNode *iremote; 6472394ed5ebSJunchao Zhang 64739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6476394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6477394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6478394ed5ebSJunchao Zhang iremote[k].index = 0; 6479394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 648054c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6481394ed5ebSJunchao Zhang } 64829566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64839566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64849566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6486e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6487394ed5ebSJunchao Zhang 6488394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6489394ed5ebSJunchao Zhang PetscSF sf2; 6490394ed5ebSJunchao Zhang nroots = nroots2; 6491394ed5ebSJunchao Zhang nleaves = nleaves2; 64929566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 64939566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 64949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6495394ed5ebSJunchao Zhang p = 0; 6496394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 649754c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6498394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6499394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65006497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6501394ed5ebSJunchao Zhang } 6502394ed5ebSJunchao Zhang } 65039566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6504394ed5ebSJunchao Zhang 6505394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6506394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6507394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65089566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6509834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6510834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6511de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6512de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6513834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6514834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6515834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6516834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6517394ed5ebSJunchao Zhang 65189566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65199566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6520394ed5ebSJunchao Zhang 6521394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6522394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65239566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6524394ed5ebSJunchao Zhang 6525651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6526651b1cf9SStefano Zampini PetscCount *Cperm1; 6527834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6528de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6529651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6530834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6531651b1cf9SStefano Zampini 6532651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6533651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6534651b1cf9SStefano Zampini PetscBool hypre; 653517b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6536651b1cf9SStefano Zampini if (hypre) { 6537651b1cf9SStefano Zampini PetscInt *minj; 6538651b1cf9SStefano Zampini PetscBT hasdiag; 6539651b1cf9SStefano Zampini 6540651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6541651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65421690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6543651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6544651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6545651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6546651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6547651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6548651b1cf9SStefano Zampini } 6549651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6550651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6551651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6552651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6553651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6554651b1cf9SStefano Zampini } 6555651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6556651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6557651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6558651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6559651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6560651b1cf9SStefano Zampini } 6561651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6562651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6563651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6564651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6565651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6566651b1cf9SStefano Zampini } 6567651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6568651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6569651b1cf9SStefano Zampini } 6570651b1cf9SStefano Zampini 6571651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6572651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6573651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6574651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6575394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6576394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6577394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6578394ed5ebSJunchao Zhang 6579651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65809566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6581651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65829566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6583394ed5ebSJunchao Zhang 6584394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6585394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6586394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6587394ed5ebSJunchao Zhang 65889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6592394ed5ebSJunchao Zhang 6593394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6594158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6595158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6596158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6597158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6598394ed5ebSJunchao Zhang 65999566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66009566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6601158ec288SJunchao Zhang 6602158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6603158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6604158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6605158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6606158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6607158ec288SJunchao Zhang 6608158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6609158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6610158ec288SJunchao Zhang 6611158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6612158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6613158ec288SJunchao Zhang 6614158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6615158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6616158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6617158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66189566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66199566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6620e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66219566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6622394ed5ebSJunchao Zhang 6623158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6624158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6625158ec288SJunchao Zhang 6626394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6627394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6628394ed5ebSJunchao Zhang PetscInt *Aj_new; 66299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66309566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66319566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6632394ed5ebSJunchao Zhang Aj = Aj_new; 6633394ed5ebSJunchao Zhang } 6634394ed5ebSJunchao Zhang 6635394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6636394ed5ebSJunchao Zhang PetscInt *Bj_new; 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66399566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6640394ed5ebSJunchao Zhang Bj = Bj_new; 6641394ed5ebSJunchao Zhang } 6642394ed5ebSJunchao Zhang 6643cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6644394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6645cbc6b225SStefano Zampini MatType rtype; 6646394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6647cf8ba265SJunchao Zhang PetscObjectState state; 66489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6650394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66519371c9d4SSatish Balay if (cstart) { 66529371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66539371c9d4SSatish Balay } 6654c508b908SBarry Smith 66559566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6656c508b908SBarry Smith 6657c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6658c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 66599566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66600da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6661c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6662c508b908SBarry Smith 6663c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6664c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 66659566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66660da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6667c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6668c508b908SBarry Smith 66699566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66705bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6671cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6672462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6673cbc6b225SStefano Zampini 6674394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6675394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 66769f0612e4SBarry Smith a->free_a = PETSC_TRUE; 66779f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 66789f0612e4SBarry Smith b->free_a = PETSC_TRUE; 66799f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 668017b874c6SStefano Zampini a->maxnz = a->nz; 668117b874c6SStefano Zampini b->maxnz = b->nz; 6682394ed5ebSJunchao Zhang 6683cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66849566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66859566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66879566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6688cbc6b225SStefano Zampini 66892c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66902c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66912c4ab24aSJunchao Zhang coo->n = coo_n; 66922c4ab24aSJunchao Zhang coo->sf = sf2; 66932c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66942c4ab24aSJunchao Zhang coo->recvlen = nroots; 66952c4ab24aSJunchao Zhang coo->Annz = Annz; 66962c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66972c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66982c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66992c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67002c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67012c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67022c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67032c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67042c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67052c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67062c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67072c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67082c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67092c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67102c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67112c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67122c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67132c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67142c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67152c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67162c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67172c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 671849abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67192c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67202c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6722394ed5ebSJunchao Zhang } 6723394ed5ebSJunchao Zhang 6724d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6725d71ae5a4SJacob Faibussowitsch { 6726394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6727394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6728394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67292c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67302c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67312c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67322c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67332c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67342c4ab24aSJunchao Zhang PetscContainer container; 67352c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6736394ed5ebSJunchao Zhang 6737394ed5ebSJunchao Zhang PetscFunctionBegin; 67382c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67392c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67402c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67412c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67422c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67432c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67442c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67452c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67462c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67472c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67482c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67492c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67502c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67512c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67522c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67532c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67542c4ab24aSJunchao Zhang 67559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6757394ed5ebSJunchao Zhang 6758394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67592c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6760394ed5ebSJunchao Zhang 6761394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67622c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6763394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67642c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6765da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6766158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6767158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6768394ed5ebSJunchao Zhang } 67692c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6770158ec288SJunchao Zhang PetscScalar sum = 0.0; 6771158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6772158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6773394ed5ebSJunchao Zhang } 67742c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6775394ed5ebSJunchao Zhang 6776394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67772c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6778394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6779394ed5ebSJunchao Zhang } 67802c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6781394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6782394ed5ebSJunchao Zhang } 67839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6786394ed5ebSJunchao Zhang } 6787394ed5ebSJunchao Zhang 6788ccd8e176SBarry Smith /*MC 6789ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6790ccd8e176SBarry Smith 6791ccd8e176SBarry Smith Options Database Keys: 679211a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6793ccd8e176SBarry Smith 6794ccd8e176SBarry Smith Level: beginner 67950cd7f59aSBarry Smith 67960cd7f59aSBarry Smith Notes: 67972ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67980cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67990cd7f59aSBarry Smith in the matrix 68000cd7f59aSBarry Smith 680111a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 680211a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6803ccd8e176SBarry Smith 68041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6805ccd8e176SBarry Smith M*/ 6806d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6807d71ae5a4SJacob Faibussowitsch { 6808ccd8e176SBarry Smith Mat_MPIAIJ *b; 6809ccd8e176SBarry Smith PetscMPIInt size; 6810ccd8e176SBarry Smith 6811ccd8e176SBarry Smith PetscFunctionBegin; 68129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68132205254eSKarl Rupp 68144dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6815ccd8e176SBarry Smith B->data = (void *)b; 6816aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6817ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6818ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6819ccd8e176SBarry Smith b->size = size; 68202205254eSKarl Rupp 68219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6822ccd8e176SBarry Smith 6823ccd8e176SBarry Smith /* build cache for off array entries formed */ 68249566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68252205254eSKarl Rupp 6826ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6827f4259b30SLisandro Dalcin b->colmap = NULL; 6828f4259b30SLisandro Dalcin b->garray = NULL; 6829ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6830ccd8e176SBarry Smith 6831ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68320298fd71SBarry Smith b->lvec = NULL; 68330298fd71SBarry Smith b->Mvctx = NULL; 6834ccd8e176SBarry Smith 6835ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6836f4259b30SLisandro Dalcin b->rowindices = NULL; 6837f4259b30SLisandro Dalcin b->rowvalues = NULL; 6838ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6839ccd8e176SBarry Smith 6840f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68410298fd71SBarry Smith b->spptr = NULL; 6842f60c3dc2SHong Zhang 68439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6849674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68543d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68563d0639e7SStefano Zampini #endif 6857d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6858d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6859d5e393b6SSuyash Tandon #endif 68603d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68623d0639e7SStefano Zampini #endif 68639779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6865191b95cbSRichard Tran Mills #endif 68669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68705d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68725d7652ecSHong Zhang #endif 6873d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 68749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6875d24d4204SJose E. Roman #endif 68769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68783dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68813dad0653Sstefano_zampini #endif 68829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68869566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6888ccd8e176SBarry Smith } 688981824310SBarry Smith 68905d83a8b1SBarry Smith /*@ 689111a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 689203bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 689303bfb495SBarry Smith 6894d083f849SBarry Smith Collective 689503bfb495SBarry Smith 689603bfb495SBarry Smith Input Parameters: 689703bfb495SBarry Smith + comm - MPI communicator 689811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 689903bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6900d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69012ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69022ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69032ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6904483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 690504ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 690603bfb495SBarry Smith . a - matrix values 6907483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69082ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 690903bfb495SBarry Smith - oa - matrix values 691003bfb495SBarry Smith 691103bfb495SBarry Smith Output Parameter: 691203bfb495SBarry Smith . mat - the matrix 691303bfb495SBarry Smith 691403bfb495SBarry Smith Level: advanced 691503bfb495SBarry Smith 691603bfb495SBarry Smith Notes: 6917f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6918292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 691903bfb495SBarry Smith 69202ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 692103bfb495SBarry Smith 69222ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 692303bfb495SBarry Smith 69247b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69257b55108eSBarry Smith 6926dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6927dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6928dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6929dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 693011a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6931dca341c0SJed Brown communication if it is known that only local entries will be set. 693203bfb495SBarry Smith 69331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6934db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69352b26979fSBarry Smith @*/ 6936d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6937d71ae5a4SJacob Faibussowitsch { 693803bfb495SBarry Smith Mat_MPIAIJ *maij; 693903bfb495SBarry Smith 694003bfb495SBarry Smith PetscFunctionBegin; 694108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6942aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6943aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69469566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 694703bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69482205254eSKarl Rupp 69498d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 695003bfb495SBarry Smith 69519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 695303bfb495SBarry Smith 69549566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69559566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 695603bfb495SBarry Smith 69579566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69609566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69619566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 696303bfb495SBarry Smith } 696403bfb495SBarry Smith 69654e84afc0SStefano Zampini typedef struct { 69664e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69674e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69684e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69694e84afc0SStefano Zampini 69704e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69714e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69724e84afc0SStefano Zampini PetscScalar *bufa; 69734e84afc0SStefano Zampini Mat P_oth; 69744e84afc0SStefano Zampini 69754e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6976ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69774e84afc0SStefano Zampini 6978ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69794e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69804e84afc0SStefano Zampini of the temporary storage */ 69814e84afc0SStefano Zampini PetscBool reusesym; 69824e84afc0SStefano Zampini 69834e84afc0SStefano Zampini /* support for COO values insertion */ 6984ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6985ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6986ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6987ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6988c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6989c215019aSStefano Zampini PetscMemType mtype; 69904e84afc0SStefano Zampini 69914e84afc0SStefano Zampini /* customization */ 69924e84afc0SStefano Zampini PetscBool abmerge; 6993abb89eb1SStefano Zampini PetscBool P_oth_bind; 69944e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69954e84afc0SStefano Zampini 6996ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 6997d71ae5a4SJacob Faibussowitsch { 69984e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 69994e84afc0SStefano Zampini PetscInt i; 70004e84afc0SStefano Zampini 70014e84afc0SStefano Zampini PetscFunctionBegin; 70029566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70039566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70049566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70059566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70079566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70089566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 700948a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70109566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70119566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70129566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70139566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70149566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70159566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70174e84afc0SStefano Zampini } 70184e84afc0SStefano Zampini 7019fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7020fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7021fff043a9SJunchao Zhang */ 7022d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7023d71ae5a4SJacob Faibussowitsch { 7024c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7025c215019aSStefano Zampini 7026c215019aSStefano Zampini PetscFunctionBegin; 70279566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7028c215019aSStefano Zampini if (f) { 70299566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7030c215019aSStefano Zampini } else { 7031c215019aSStefano Zampini const PetscScalar *vv; 7032c215019aSStefano Zampini 70339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7034c215019aSStefano Zampini if (n && idx) { 7035c215019aSStefano Zampini PetscScalar *w = v; 7036c215019aSStefano Zampini const PetscInt *oi = idx; 7037c215019aSStefano Zampini PetscInt j; 7038c215019aSStefano Zampini 7039c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7040c215019aSStefano Zampini } else { 70419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7042c215019aSStefano Zampini } 70439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7044c215019aSStefano Zampini } 70453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7046c215019aSStefano Zampini } 7047c215019aSStefano Zampini 7048d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7049d71ae5a4SJacob Faibussowitsch { 70504e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70514e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70524e84afc0SStefano Zampini 70534e84afc0SStefano Zampini PetscFunctionBegin; 70544e84afc0SStefano Zampini MatCheckProduct(C, 1); 705528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70564e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70574e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 705848a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 705948a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70604e84afc0SStefano Zampini } 70614e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7062abb89eb1SStefano Zampini 7063abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 706408401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70659566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7066abb89eb1SStefano Zampini } 70674e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70686497c311SBarry Smith PetscInt noff; 70694e84afc0SStefano Zampini 70706497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 70714e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70724e84afc0SStefano Zampini if (noff) { 70736497c311SBarry Smith PetscInt nown; 7074c215019aSStefano Zampini 70756497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 70769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70784e84afc0SStefano Zampini n_o += noff; 70794e84afc0SStefano Zampini n_d += nown; 70804e84afc0SStefano Zampini } else { 7081c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7082c215019aSStefano Zampini 70839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70844e84afc0SStefano Zampini n_d += mm->nz; 70854e84afc0SStefano Zampini } 70864e84afc0SStefano Zampini } 7087c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70889566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70899566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70904e84afc0SStefano Zampini } 70919566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70934e84afc0SStefano Zampini } 70944e84afc0SStefano Zampini 70954e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70964e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7097d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7098d71ae5a4SJacob Faibussowitsch { 70994e84afc0SStefano Zampini Mat_Product *product = C->product; 7100ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71014e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71024e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71034e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71044e84afc0SStefano Zampini IS glob = NULL; 71054e84afc0SStefano Zampini const char *prefix; 71064e84afc0SStefano Zampini char pprefix[256]; 71074e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 710882a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 710982a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7110ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7111ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7112ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7113ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7114ddea5d60SJunchao Zhang 71154e84afc0SStefano Zampini MatProductType ptype; 7116d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71174e84afc0SStefano Zampini PetscMPIInt size; 71184e84afc0SStefano Zampini 71194e84afc0SStefano Zampini PetscFunctionBegin; 71204e84afc0SStefano Zampini MatCheckProduct(C, 1); 712128b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71224e84afc0SStefano Zampini ptype = product->type; 7123b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7124fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7125fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7126fa046f9fSJunchao Zhang } 71274e84afc0SStefano Zampini switch (ptype) { 71284e84afc0SStefano Zampini case MATPRODUCT_AB: 71294e84afc0SStefano Zampini A = product->A; 71304e84afc0SStefano Zampini P = product->B; 71314e84afc0SStefano Zampini m = A->rmap->n; 71324e84afc0SStefano Zampini n = P->cmap->n; 71334e84afc0SStefano Zampini M = A->rmap->N; 71344e84afc0SStefano Zampini N = P->cmap->N; 7135ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71364e84afc0SStefano Zampini break; 71374e84afc0SStefano Zampini case MATPRODUCT_AtB: 71384e84afc0SStefano Zampini P = product->A; 71394e84afc0SStefano Zampini A = product->B; 71404e84afc0SStefano Zampini m = P->cmap->n; 71414e84afc0SStefano Zampini n = A->cmap->n; 71424e84afc0SStefano Zampini M = P->cmap->N; 71434e84afc0SStefano Zampini N = A->cmap->N; 71444e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71454e84afc0SStefano Zampini break; 71464e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71474e84afc0SStefano Zampini A = product->A; 71484e84afc0SStefano Zampini P = product->B; 71494e84afc0SStefano Zampini m = P->cmap->n; 71504e84afc0SStefano Zampini n = P->cmap->n; 71514e84afc0SStefano Zampini M = P->cmap->N; 71524e84afc0SStefano Zampini N = P->cmap->N; 71534e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71544e84afc0SStefano Zampini break; 7155d71ae5a4SJacob Faibussowitsch default: 7156d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71574e84afc0SStefano Zampini } 71589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71594e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71604e84afc0SStefano Zampini 71614e84afc0SStefano Zampini /* defaults */ 71624e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71634e84afc0SStefano Zampini mp[i] = NULL; 71644e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71654e84afc0SStefano Zampini rmapt[i] = -1; 71664e84afc0SStefano Zampini cmapt[i] = -1; 71674e84afc0SStefano Zampini rmapa[i] = NULL; 71684e84afc0SStefano Zampini cmapa[i] = NULL; 71694e84afc0SStefano Zampini } 71704e84afc0SStefano Zampini 71714e84afc0SStefano Zampini /* customization */ 71729566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71734e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71744e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71754e84afc0SStefano Zampini if (product->api_user) { 7176d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71779566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71789566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7179d0609cedSBarry Smith PetscOptionsEnd(); 71804e84afc0SStefano Zampini } else { 7181d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71829566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71839566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7184d0609cedSBarry Smith PetscOptionsEnd(); 7185abb89eb1SStefano Zampini } 7186abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7187abb89eb1SStefano Zampini if (product->api_user) { 7188d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7190d0609cedSBarry Smith PetscOptionsEnd(); 7191abb89eb1SStefano Zampini } else { 7192d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71939566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7194d0609cedSBarry Smith PetscOptionsEnd(); 71954e84afc0SStefano Zampini } 71964e84afc0SStefano Zampini } 71974e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71984e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72029566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72039566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7204ddea5d60SJunchao Zhang 7205ddea5d60SJunchao Zhang cp = 0; 72064e84afc0SStefano Zampini switch (ptype) { 72074e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72089566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72094e84afc0SStefano Zampini 7210ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7211ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72124e84afc0SStefano Zampini /* P is product->B */ 72139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72149566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72159566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72169566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72189566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72199566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72204e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72219566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72229566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72244e84afc0SStefano Zampini rmapt[cp] = 1; 72254e84afc0SStefano Zampini cmapt[cp] = 2; 72264e84afc0SStefano Zampini cmapa[cp] = globidx; 72274e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72284e84afc0SStefano Zampini cp++; 7229ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72309566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72319566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72329566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72339566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72349566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72359566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72364e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72379566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72389566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72394e84afc0SStefano Zampini rmapt[cp] = 1; 72404e84afc0SStefano Zampini cmapt[cp] = 1; 72414e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72424e84afc0SStefano Zampini cp++; 72439566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72449566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72459566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72469566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72479566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72489566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72494e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72509566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72519566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72524e84afc0SStefano Zampini rmapt[cp] = 1; 72534e84afc0SStefano Zampini cmapt[cp] = 2; 72544e84afc0SStefano Zampini cmapa[cp] = p->garray; 72554e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72564e84afc0SStefano Zampini cp++; 72574e84afc0SStefano Zampini } 7258ddea5d60SJunchao Zhang 7259ddea5d60SJunchao Zhang /* A_off * P_other */ 72604e84afc0SStefano Zampini if (mmdata->P_oth) { 72619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72629566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7263f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 72649566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72659566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72669566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72679566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72689566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72699566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72709566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72714e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72729566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72739566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72744e84afc0SStefano Zampini rmapt[cp] = 1; 72754e84afc0SStefano Zampini cmapt[cp] = 2; 72764e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72774e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72784e84afc0SStefano Zampini cp++; 72794e84afc0SStefano Zampini } 72804e84afc0SStefano Zampini break; 7281ddea5d60SJunchao Zhang 72824e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72834e84afc0SStefano Zampini /* A is product->B */ 72849566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7285ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72869566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72899566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72909566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72919566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72924e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72964e84afc0SStefano Zampini rmapt[cp] = 2; 72974e84afc0SStefano Zampini rmapa[cp] = globidx; 72984e84afc0SStefano Zampini cmapt[cp] = 2; 72994e84afc0SStefano Zampini cmapa[cp] = globidx; 73004e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73014e84afc0SStefano Zampini cp++; 73024e84afc0SStefano Zampini } else { 73039566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73049566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73059566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73069566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73079566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73089566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73094e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73109566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73119566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73134e84afc0SStefano Zampini rmapt[cp] = 1; 73144e84afc0SStefano Zampini cmapt[cp] = 2; 73154e84afc0SStefano Zampini cmapa[cp] = globidx; 73164e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73174e84afc0SStefano Zampini cp++; 73189566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73199566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73209566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73219566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73229566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73239566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73244e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73259566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73269566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73274e84afc0SStefano Zampini rmapt[cp] = 2; 73284e84afc0SStefano Zampini rmapa[cp] = p->garray; 73294e84afc0SStefano Zampini cmapt[cp] = 2; 73304e84afc0SStefano Zampini cmapa[cp] = globidx; 73314e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73324e84afc0SStefano Zampini cp++; 73334e84afc0SStefano Zampini } 73344e84afc0SStefano Zampini break; 73354e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73369566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73374e84afc0SStefano Zampini /* P is product->B */ 73389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73399566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73409566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73419566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73429566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73439566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73449566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73454e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73469566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73479566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73494e84afc0SStefano Zampini rmapt[cp] = 2; 73504e84afc0SStefano Zampini rmapa[cp] = globidx; 73514e84afc0SStefano Zampini cmapt[cp] = 2; 73524e84afc0SStefano Zampini cmapa[cp] = globidx; 73534e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73544e84afc0SStefano Zampini cp++; 73554e84afc0SStefano Zampini if (mmdata->P_oth) { 73569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73579566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7358f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73599566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73609566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73629566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73639566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73649566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73659566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73664e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73679566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73689566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73694e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73704e84afc0SStefano Zampini cp++; 73719566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73729566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73739566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73749566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73759566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73769566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73774e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73789566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73799566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73804e84afc0SStefano Zampini rmapt[cp] = 2; 73814e84afc0SStefano Zampini rmapa[cp] = globidx; 73824e84afc0SStefano Zampini cmapt[cp] = 2; 73834e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73844e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73854e84afc0SStefano Zampini cp++; 73864e84afc0SStefano Zampini } 73874e84afc0SStefano Zampini break; 7388d71ae5a4SJacob Faibussowitsch default: 7389d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73904e84afc0SStefano Zampini } 73914e84afc0SStefano Zampini /* sanity check */ 73929371c9d4SSatish Balay if (size > 1) 73939371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73944e84afc0SStefano Zampini 73959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7396ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7397ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7398ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7399ddea5d60SJunchao Zhang } 74004e84afc0SStefano Zampini mmdata->cp = cp; 74014e84afc0SStefano Zampini C->product->data = mmdata; 74024e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74034e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74044e84afc0SStefano Zampini 7405c215019aSStefano Zampini /* memory type */ 7406c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7408d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7410c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7411d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74123214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7413c215019aSStefano Zampini 74144e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7415ddea5d60SJunchao Zhang 7416ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7417ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7418ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7419ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7420ddea5d60SJunchao Zhang */ 74214e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74224e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74234e84afc0SStefano Zampini if (mptmp[cp]) continue; 7424ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74254e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74264e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74274e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74284e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74294e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74304e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74314e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74324e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7433ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7434ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74354e84afc0SStefano Zampini } 74364e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74374e84afc0SStefano Zampini } 7438ddea5d60SJunchao Zhang 7439ddea5d60SJunchao Zhang /* 7440ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7441ddea5d60SJunchao Zhang 7442ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7443ddea5d60SJunchao Zhang 7444d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7445ddea5d60SJunchao Zhang 7446ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7447ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7448ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7449ddea5d60SJunchao Zhang 7450ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7451da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7452ddea5d60SJunchao Zhang */ 74539566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7455ddea5d60SJunchao Zhang 7456ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7457ddea5d60SJunchao Zhang if (hasoffproc) { 74584e84afc0SStefano Zampini PetscSF msf; 74594e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74604e84afc0SStefano Zampini 74619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74639566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7464ddea5d60SJunchao Zhang 74654e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74664e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74674e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74684e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7469ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74704e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74714e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74724e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74734e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74744e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74754e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74764e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74774e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74784e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74794e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74804e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74814e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74824e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7483ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74844e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74854e84afc0SStefano Zampini *coi++ = gr; 74864e84afc0SStefano Zampini *idxoff++ = j; 74874e84afc0SStefano Zampini } 74884e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74894e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74904e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74914e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74924e84afc0SStefano Zampini } else { /* offdiag */ 74934e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74944e84afc0SStefano Zampini } 74954e84afc0SStefano Zampini ncoo_o += nz; 7496ddea5d60SJunchao Zhang } else { /* this is a local row */ 74974e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74984e84afc0SStefano Zampini } 74994e84afc0SStefano Zampini } 75004e84afc0SStefano Zampini } 75014e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75024e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75034e84afc0SStefano Zampini } 75044e84afc0SStefano Zampini 75059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75066497c311SBarry Smith PetscInt incoo_o; 75076497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75086497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75099566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75109566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75114e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75129566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75139566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75149566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75159566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75169566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75179566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7518ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75199566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75204e84afc0SStefano Zampini coo_i = coo_i2; 75214e84afc0SStefano Zampini coo_j = coo_j2; 75224e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75234e84afc0SStefano Zampini ncoo = ncoo_d; 75249566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7525c215019aSStefano Zampini 75269566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75279566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75289566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75294e84afc0SStefano Zampini } 7530c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75314e84afc0SStefano Zampini 7532ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75334e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75344e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75354e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75364e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75374e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75384e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75394e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75404e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75414e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75424e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75434e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75444e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75454e84afc0SStefano Zampini 75464e84afc0SStefano Zampini if (mptmp[cp]) continue; 7547ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7548ddea5d60SJunchao Zhang /* fill coo_i */ 75494e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75504e84afc0SStefano Zampini const PetscInt gr = i + rs; 75514e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75524e84afc0SStefano Zampini } 7553ddea5d60SJunchao Zhang /* fill coo_j */ 7554ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7556ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7557ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7558ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75594e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75604e84afc0SStefano Zampini } 75614e84afc0SStefano Zampini ncoo_d += mm->nz; 7562ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75634e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75644e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75654e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75664e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7567ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75684e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7569ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75704e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75714e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75724e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7573ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75744e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75754e84afc0SStefano Zampini } 75764e84afc0SStefano Zampini ncoo_d += nz; 75774e84afc0SStefano Zampini } 75784e84afc0SStefano Zampini } 75794e84afc0SStefano Zampini } 75804e84afc0SStefano Zampini } 758148a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 758348a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75849566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7585ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75869566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75874e84afc0SStefano Zampini 758839cfb508SMark Adams /* set block sizes */ 758939cfb508SMark Adams A = product->A; 759039cfb508SMark Adams P = product->B; 759139cfb508SMark Adams switch (ptype) { 759239cfb508SMark Adams case MATPRODUCT_PtAP: 759358b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 759439cfb508SMark Adams break; 759539cfb508SMark Adams case MATPRODUCT_RARt: 759658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 759739cfb508SMark Adams break; 759839cfb508SMark Adams case MATPRODUCT_ABC: 759939cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 760039cfb508SMark Adams break; 760139cfb508SMark Adams case MATPRODUCT_AB: 760239cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 760339cfb508SMark Adams break; 760439cfb508SMark Adams case MATPRODUCT_AtB: 760558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 760639cfb508SMark Adams break; 760739cfb508SMark Adams case MATPRODUCT_ABt: 760858b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 760939cfb508SMark Adams break; 761039cfb508SMark Adams default: 761139cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 761239cfb508SMark Adams } 761339cfb508SMark Adams 76144e84afc0SStefano Zampini /* preallocate with COO data */ 76159566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76169566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76184e84afc0SStefano Zampini } 76194e84afc0SStefano Zampini 7620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7621d71ae5a4SJacob Faibussowitsch { 76224e84afc0SStefano Zampini Mat_Product *product = mat->product; 76234e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76244e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7625abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76264e84afc0SStefano Zampini #else 76274e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76284e84afc0SStefano Zampini #endif 76294e84afc0SStefano Zampini 76304e84afc0SStefano Zampini PetscFunctionBegin; 76314e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76324e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 763348a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 763465e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7635abb89eb1SStefano Zampini switch (product->type) { 7636abb89eb1SStefano Zampini case MATPRODUCT_AB: 7637abb89eb1SStefano Zampini if (product->api_user) { 7638d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7640d0609cedSBarry Smith PetscOptionsEnd(); 7641abb89eb1SStefano Zampini } else { 7642d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76439566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7644d0609cedSBarry Smith PetscOptionsEnd(); 7645abb89eb1SStefano Zampini } 7646abb89eb1SStefano Zampini break; 7647abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7648abb89eb1SStefano Zampini if (product->api_user) { 7649d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76509566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7651d0609cedSBarry Smith PetscOptionsEnd(); 7652abb89eb1SStefano Zampini } else { 7653d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76549566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7655d0609cedSBarry Smith PetscOptionsEnd(); 7656abb89eb1SStefano Zampini } 7657abb89eb1SStefano Zampini break; 7658abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7659abb89eb1SStefano Zampini if (product->api_user) { 7660d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7662d0609cedSBarry Smith PetscOptionsEnd(); 7663abb89eb1SStefano Zampini } else { 7664d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7666d0609cedSBarry Smith PetscOptionsEnd(); 7667abb89eb1SStefano Zampini } 7668abb89eb1SStefano Zampini break; 7669d71ae5a4SJacob Faibussowitsch default: 7670d71ae5a4SJacob Faibussowitsch break; 7671abb89eb1SStefano Zampini } 7672abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7673abb89eb1SStefano Zampini } 76744e84afc0SStefano Zampini #endif 76754e84afc0SStefano Zampini if (match) { 76764e84afc0SStefano Zampini switch (product->type) { 76774e84afc0SStefano Zampini case MATPRODUCT_AB: 76784e84afc0SStefano Zampini case MATPRODUCT_AtB: 7679d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7680d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7681d71ae5a4SJacob Faibussowitsch break; 7682d71ae5a4SJacob Faibussowitsch default: 7683d71ae5a4SJacob Faibussowitsch break; 76844e84afc0SStefano Zampini } 76854e84afc0SStefano Zampini } 76864e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76879566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768981824310SBarry Smith } 769098921bdaSJacob Faibussowitsch 769198921bdaSJacob Faibussowitsch /* 769272833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 769372833a62Smarkadams4 769472833a62Smarkadams4 n - the number of block indices in cc[] 769572833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 769672833a62Smarkadams4 */ 7697d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7698d71ae5a4SJacob Faibussowitsch { 769972833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 770072833a62Smarkadams4 const PetscInt *idx; 770172833a62Smarkadams4 770272833a62Smarkadams4 PetscFunctionBegin; 770372833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 770472833a62Smarkadams4 if (nidx) { 770572833a62Smarkadams4 cnt = 0; 770672833a62Smarkadams4 cc[cnt] = idx[0] / bs; 770772833a62Smarkadams4 for (j = 1; j < nidx; j++) { 770872833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 770972833a62Smarkadams4 } 771072833a62Smarkadams4 } 771172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 771272833a62Smarkadams4 *n = cnt + 1; 77133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771472833a62Smarkadams4 } 771572833a62Smarkadams4 771672833a62Smarkadams4 /* 771772833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 771872833a62Smarkadams4 771972833a62Smarkadams4 ncollapsed - the number of block indices 772072833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 772172833a62Smarkadams4 */ 7722d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7723d71ae5a4SJacob Faibussowitsch { 772472833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 772572833a62Smarkadams4 772672833a62Smarkadams4 PetscFunctionBegin; 772772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 772872833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 772972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 773072833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77319371c9d4SSatish Balay cprevtmp = cprev; 77329371c9d4SSatish Balay cprev = merged; 77339371c9d4SSatish Balay merged = cprevtmp; 773472833a62Smarkadams4 } 773572833a62Smarkadams4 *ncollapsed = nprev; 773672833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773872833a62Smarkadams4 } 773972833a62Smarkadams4 77402d776b49SBarry Smith /* 774172833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 774272833a62Smarkadams4 774372833a62Smarkadams4 Input Parameter: 774472833a62Smarkadams4 . Amat - matrix 774572833a62Smarkadams4 - symmetrize - make the result symmetric 774672833a62Smarkadams4 + scale - scale with diagonal 774772833a62Smarkadams4 774872833a62Smarkadams4 Output Parameter: 774972833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 775072833a62Smarkadams4 775172833a62Smarkadams4 */ 7752e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7753d71ae5a4SJacob Faibussowitsch { 775472833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 775572833a62Smarkadams4 MPI_Comm comm; 775672833a62Smarkadams4 Mat Gmat; 775772833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 775872833a62Smarkadams4 Mat a, b, c; 775972833a62Smarkadams4 MatType jtype; 776072833a62Smarkadams4 776172833a62Smarkadams4 PetscFunctionBegin; 776272833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 776372833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 776472833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 776572833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 776672833a62Smarkadams4 nloc = (Iend - Istart) / bs; 776772833a62Smarkadams4 776872833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 776972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 777072833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 777172833a62Smarkadams4 777272833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 777372833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 777472833a62Smarkadams4 implementation */ 777572833a62Smarkadams4 if (bs > 1) { 777672833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 777772833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 777872833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 777972833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 778072833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 778172833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 778272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77832cf69117Smarkadams4 MatScalar *aa, val, *AA; 77842cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77856497c311SBarry Smith 77869371c9d4SSatish Balay if (isseqaij) { 77879371c9d4SSatish Balay a = Amat; 77889371c9d4SSatish Balay b = NULL; 77899371c9d4SSatish Balay } else { 779072833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77919371c9d4SSatish Balay a = d->A; 77929371c9d4SSatish Balay b = d->B; 779372833a62Smarkadams4 } 779472833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 779532603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 779672833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77972cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 779859ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 77996497c311SBarry Smith 780059ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 780159ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 780259ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 780359ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 780472833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 780559ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 780659ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 780759ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 780859ee9f9fSPierre Jolivet else { 780959ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 781059ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 781159ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 781272833a62Smarkadams4 } 781359ee9f9fSPierre Jolivet } 781459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 781559ee9f9fSPierre Jolivet } 781659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 781772833a62Smarkadams4 if (!ok) { 781872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 781959ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 782072833a62Smarkadams4 goto old_bs; 782172833a62Smarkadams4 } 782272833a62Smarkadams4 } 782372833a62Smarkadams4 } 782472833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 782572833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 782672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78272cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 782872833a62Smarkadams4 // diag 782972833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 783072833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78316497c311SBarry Smith 783272833a62Smarkadams4 ai = aseq->i; 783372833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 783472833a62Smarkadams4 aj = aseq->j + ai[brow]; 78356497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 783672833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 783772833a62Smarkadams4 val = 0; 7838e02fb3cdSMark Adams if (index_size == 0) { 78396497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 784072833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78416497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 784272833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 784372833a62Smarkadams4 } 784472833a62Smarkadams4 } 7845e02fb3cdSMark Adams } else { // use (index,index) value if provided 78466497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78476497c311SBarry Smith PetscInt ii = index[iii]; 7848e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78496497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78506497c311SBarry Smith PetscInt jj = index[jjj]; 7851cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7852e02fb3cdSMark Adams } 7853e02fb3cdSMark Adams } 7854e02fb3cdSMark Adams } 7855835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 785672833a62Smarkadams4 AA[k / bs] = val; 785772833a62Smarkadams4 } 785872833a62Smarkadams4 grow = Istart / bs + brow / bs; 785966521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 786072833a62Smarkadams4 } 786172833a62Smarkadams4 // off-diag 786272833a62Smarkadams4 if (ismpiaij) { 786372833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 786472833a62Smarkadams4 const PetscScalar *vals; 786572833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78666497c311SBarry Smith 786772833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 786872833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 786972833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78706497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 787159ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 787272833a62Smarkadams4 AA[k / bs] = 0; 787372833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 787472833a62Smarkadams4 } 787572833a62Smarkadams4 nc = ncols / bs; 787672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7877e02fb3cdSMark Adams if (index_size == 0) { 78786497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 787972833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78806497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78816497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7882835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 788372833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 788472833a62Smarkadams4 } 788572833a62Smarkadams4 } 788672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 788772833a62Smarkadams4 } 7888e02fb3cdSMark Adams } else { // use (index,index) value if provided 78896497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78906497c311SBarry Smith PetscInt ii = index[iii]; 7891e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78926497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78936497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 78946497c311SBarry Smith PetscInt jj = index[jjj]; 7895e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7896e02fb3cdSMark Adams } 7897e02fb3cdSMark Adams } 7898e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7899e02fb3cdSMark Adams } 7900e02fb3cdSMark Adams } 790172833a62Smarkadams4 grow = Istart / bs + brow / bs; 790266521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 790372833a62Smarkadams4 } 790472833a62Smarkadams4 } 790572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 790672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79072cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 790872833a62Smarkadams4 } else { 790972833a62Smarkadams4 const PetscScalar *vals; 791072833a62Smarkadams4 const PetscInt *idx; 791172833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 791272833a62Smarkadams4 old_bs: 791372833a62Smarkadams4 /* 791472833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 791572833a62Smarkadams4 */ 791672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 791732603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 791872833a62Smarkadams4 if (isseqaij) { 791972833a62Smarkadams4 PetscInt max_d_nnz; 79206497c311SBarry Smith 792172833a62Smarkadams4 /* 792272833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 792372833a62Smarkadams4 */ 792472833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 792572833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792672833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792748a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792872833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792972833a62Smarkadams4 } else if (ismpiaij) { 793072833a62Smarkadams4 Mat Daij, Oaij; 793172833a62Smarkadams4 const PetscInt *garray; 793272833a62Smarkadams4 PetscInt max_d_nnz; 79336497c311SBarry Smith 793472833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 793572833a62Smarkadams4 /* 793672833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 793772833a62Smarkadams4 */ 793872833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 793972833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794072833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 794148a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 794272833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 794372833a62Smarkadams4 /* 794472833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 794572833a62Smarkadams4 */ 794672833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 794772833a62Smarkadams4 o_nnz[jj] = 0; 794872833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 794972833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795072833a62Smarkadams4 o_nnz[jj] += ncols; 795172833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795272833a62Smarkadams4 } 795372833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 795472833a62Smarkadams4 } 795572833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 795672833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 795772833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 795872833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 795972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 796072833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 796172833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79626497c311SBarry Smith 796372833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 796472833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 796572833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 796672833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79676497c311SBarry Smith 796872833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 796972833a62Smarkadams4 } 797072833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 797172833a62Smarkadams4 } 797272833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 797372833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 797472833a62Smarkadams4 } 797572833a62Smarkadams4 } else { 79762d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79772d776b49SBarry Smith else { 79782d776b49SBarry Smith Gmat = Amat; 79792d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79802d776b49SBarry Smith } 79819371c9d4SSatish Balay if (isseqaij) { 79829371c9d4SSatish Balay a = Gmat; 79839371c9d4SSatish Balay b = NULL; 79849371c9d4SSatish Balay } else { 798572833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79869371c9d4SSatish Balay a = d->A; 79879371c9d4SSatish Balay b = d->B; 798872833a62Smarkadams4 } 79892d776b49SBarry Smith if (filter >= 0 || scale) { 79902d776b49SBarry Smith /* take absolute value of each entry */ 799172833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 799272833a62Smarkadams4 MatInfo info; 799372833a62Smarkadams4 PetscScalar *avals; 79946497c311SBarry Smith 799572833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 799672833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 799772833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 799872833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 799972833a62Smarkadams4 } 800072833a62Smarkadams4 } 80012d776b49SBarry Smith } 800272833a62Smarkadams4 if (symmetrize) { 8003b94d7dedSBarry Smith PetscBool isset, issym; 80046497c311SBarry Smith 8005b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8006b94d7dedSBarry Smith if (!isset || !issym) { 800772833a62Smarkadams4 Mat matTrans; 80086497c311SBarry Smith 800972833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80101fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 801172833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 801272833a62Smarkadams4 } 801372833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80142d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801572833a62Smarkadams4 if (scale) { 801672833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 801772833a62Smarkadams4 Vec diag; 80186497c311SBarry Smith 801972833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 802072833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 802172833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 802272833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802372833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802472833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802572833a62Smarkadams4 } 802672833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80272d776b49SBarry Smith if (filter >= 0) { 80282ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80292ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80302d776b49SBarry Smith } 803172833a62Smarkadams4 *a_Gmat = Gmat; 80323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803372833a62Smarkadams4 } 803472833a62Smarkadams4 803503db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype) 803603db1824SAlex Lindsay { 803703db1824SAlex Lindsay Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 803803db1824SAlex Lindsay PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST; 803903db1824SAlex Lindsay 804003db1824SAlex Lindsay PetscFunctionBegin; 804103db1824SAlex Lindsay if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD)); 804203db1824SAlex Lindsay if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO)); 804303db1824SAlex Lindsay *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST; 804403db1824SAlex Lindsay PetscFunctionReturn(PETSC_SUCCESS); 804503db1824SAlex Lindsay } 804603db1824SAlex Lindsay 804772833a62Smarkadams4 /* 804898921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 804998921bdaSJacob Faibussowitsch */ 805098921bdaSJacob Faibussowitsch 805198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80529566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80539566063dSJacob Faibussowitsch #undef PetscCall 80549371c9d4SSatish Balay #define PetscCall(...) \ 80559371c9d4SSatish Balay do { \ 80565f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 805798921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 805898921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 805998921bdaSJacob Faibussowitsch return; \ 806098921bdaSJacob Faibussowitsch } \ 806198921bdaSJacob Faibussowitsch } while (0) 806298921bdaSJacob Faibussowitsch 806398921bdaSJacob Faibussowitsch #undef SETERRQ 80649371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80659371c9d4SSatish Balay do { \ 806698921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 806798921bdaSJacob Faibussowitsch return; \ 806898921bdaSJacob Faibussowitsch } while (0) 806998921bdaSJacob Faibussowitsch 807098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 807198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 807298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 807398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 807498921bdaSJacob Faibussowitsch #else 807598921bdaSJacob Faibussowitsch #endif 8076d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8077d71ae5a4SJacob Faibussowitsch { 807898921bdaSJacob Faibussowitsch Mat mat = *mmat; 807998921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 808098921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 808198921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 808298921bdaSJacob Faibussowitsch PetscScalar value; 808398921bdaSJacob Faibussowitsch 808498921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 808598921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80865f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 808798921bdaSJacob Faibussowitsch { 808898921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 808998921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 809098921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 809198921bdaSJacob Faibussowitsch 809298921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 809398921bdaSJacob Faibussowitsch Mat A = aij->A; 809498921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 809598921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 809698921bdaSJacob Faibussowitsch MatScalar *aa; 8097f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 809898921bdaSJacob Faibussowitsch Mat B = aij->B; 809998921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 810098921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 810198921bdaSJacob Faibussowitsch MatScalar *ba; 810298921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 810398921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 810498921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 810598921bdaSJacob Faibussowitsch 810698921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 810798921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 810898921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 810998921bdaSJacob Faibussowitsch 811098921bdaSJacob Faibussowitsch PetscFunctionBegin; 81119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 811398921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 811498921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81156bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 811698921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 811798921bdaSJacob Faibussowitsch row = im[i] - rstart; 811898921bdaSJacob Faibussowitsch lastcol1 = -1; 811998921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 812098921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 812198921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 812298921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 812398921bdaSJacob Faibussowitsch low1 = 0; 812498921bdaSJacob Faibussowitsch high1 = nrow1; 812598921bdaSJacob Faibussowitsch lastcol2 = -1; 812698921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 812798921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 812898921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 812998921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 813098921bdaSJacob Faibussowitsch low2 = 0; 813198921bdaSJacob Faibussowitsch high2 = nrow2; 813298921bdaSJacob Faibussowitsch 813398921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 813498921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 813598921bdaSJacob Faibussowitsch else value = v[i + j * m]; 813698921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 813798921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 813898921bdaSJacob Faibussowitsch col = in[j] - cstart; 813998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 814098921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 814198921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 814263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 814398921bdaSJacob Faibussowitsch } else { 814498921bdaSJacob Faibussowitsch if (mat->was_assembled) { 814548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 814698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8147eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 814898921bdaSJacob Faibussowitsch col--; 814998921bdaSJacob Faibussowitsch #else 815098921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 815198921bdaSJacob Faibussowitsch #endif 8152f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8153eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 815498921bdaSJacob Faibussowitsch col = in[j]; 815598921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 815698921bdaSJacob Faibussowitsch B = aij->B; 815798921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81589371c9d4SSatish Balay bimax = b->imax; 81599371c9d4SSatish Balay bi = b->i; 81609371c9d4SSatish Balay bilen = b->ilen; 81619371c9d4SSatish Balay bj = b->j; 816298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 816398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 816498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 816598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 816698921bdaSJacob Faibussowitsch low2 = 0; 816798921bdaSJacob Faibussowitsch high2 = nrow2; 816898921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 816998921bdaSJacob Faibussowitsch ba = b->a; 817098921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 817198921bdaSJacob Faibussowitsch } 817298921bdaSJacob Faibussowitsch } else col = in[j]; 817398921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 817498921bdaSJacob Faibussowitsch } 817598921bdaSJacob Faibussowitsch } 817698921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 817798921bdaSJacob Faibussowitsch if (roworiented) { 81789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817998921bdaSJacob Faibussowitsch } else { 81809566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 818198921bdaSJacob Faibussowitsch } 818298921bdaSJacob Faibussowitsch } 818398921bdaSJacob Faibussowitsch } 81849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 818698921bdaSJacob Faibussowitsch } 818798921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 818898921bdaSJacob Faibussowitsch } 818972833a62Smarkadams4 819098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 819198921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 819298921bdaSJacob Faibussowitsch * original definitions */ 81939566063dSJacob Faibussowitsch #undef PetscCall 819498921bdaSJacob Faibussowitsch #undef SETERRQ 8195