xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 9f196a0264fbaf0568fead3a30c861c7ae4cf663)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4179680b7ceSStefano Zampini           /* Not sure LogFlops will slow down the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
6139566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
61498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6150587a0fcSBarry Smith             }
616c48de900SBarry Smith           } else col = in[j];
6178d76821aSHong Zhang           nonew = b->nonew;
618d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6191eb62cbbSBarry Smith         }
6201eb62cbbSBarry Smith       }
6215ef9f2a5SBarry Smith     } else {
62228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62390f02eecSBarry Smith       if (!aij->donotstash) {
6245080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
625d36fbae8SSatish Balay         if (roworiented) {
6268e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
627d36fbae8SSatish Balay         } else {
6288e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6294b0e389bSBarry Smith         }
6301eb62cbbSBarry Smith       }
6318a729477SBarry Smith     }
63290f02eecSBarry Smith   }
6335519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6368a729477SBarry Smith }
6378a729477SBarry Smith 
6382b08fdbeSandi selinger /*
639904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6402b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
641904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6422b08fdbeSandi selinger */
643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
644d71ae5a4SJacob Faibussowitsch {
645904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
646904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6474cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
648904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
649904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
650904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
651904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
652904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6536dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
654904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
655904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
656904d1e70Sandi selinger 
657904d1e70Sandi selinger   PetscFunctionBegin;
658904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
659904d1e70Sandi selinger   for (j = 0; j < am; j++) {
660904d1e70Sandi selinger     dnz = onz = 0;
661904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6626dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
663904d1e70Sandi selinger       /* If column is in the diagonal */
664904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
665904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
666904d1e70Sandi selinger         dnz++;
667904d1e70Sandi selinger       } else { /* off-diagonal entries */
668904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
669904d1e70Sandi selinger         onz++;
670904d1e70Sandi selinger       }
671904d1e70Sandi selinger     }
672904d1e70Sandi selinger     ailen[j] = dnz;
673904d1e70Sandi selinger     bilen[j] = onz;
674904d1e70Sandi selinger   }
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676904d1e70Sandi selinger }
677904d1e70Sandi selinger 
678904d1e70Sandi selinger /*
679904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
680904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6811de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6821de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6831de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
684904d1e70Sandi selinger */
685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
686d71ae5a4SJacob Faibussowitsch {
6873a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6883a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6894cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
690f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6923a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6933a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6943a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6953a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6966dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6971de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
698904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
699904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
7003a063d27Sandi selinger 
7013a063d27Sandi selinger   PetscFunctionBegin;
7023a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7033a063d27Sandi selinger   for (j = 0; j < am; j++) {
704904d1e70Sandi selinger     dnz_row = onz_row = 0;
705904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
706904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
707e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
708e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
709ae8e66a0Sandi selinger       /* If column is in the diagonal */
7103a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
711904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
712904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
713904d1e70Sandi selinger         dnz_row++;
714ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
715904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
716904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
717904d1e70Sandi selinger         onz_row++;
7183a063d27Sandi selinger       }
7193a063d27Sandi selinger     }
720904d1e70Sandi selinger     ailen[j] = dnz_row;
721904d1e70Sandi selinger     bilen[j] = onz_row;
7223a063d27Sandi selinger   }
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7243a063d27Sandi selinger }
7253a063d27Sandi selinger 
726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
727d71ae5a4SJacob Faibussowitsch {
728b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
729d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
730d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
731b49de8d1SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
733b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
737b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
738b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
74054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
741b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
742b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7439566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
744fa852ad4SSatish Balay       } else {
74548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
747eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
748fa46199cSSatish Balay         col--;
749b1fc9764SSatish Balay #else
750905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
751b1fc9764SSatish Balay #endif
752e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
754b49de8d1SLois Curfman McInnes       }
755b49de8d1SLois Curfman McInnes     }
756b49de8d1SLois Curfman McInnes   }
7573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
758b49de8d1SLois Curfman McInnes }
759bc5ccf88SSatish Balay 
760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
761d71ae5a4SJacob Faibussowitsch {
762bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
763b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
764bc5ccf88SSatish Balay 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7663ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
767bc5ccf88SSatish Balay 
7689566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7699566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772bc5ccf88SSatish Balay }
773bc5ccf88SSatish Balay 
774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
775d71ae5a4SJacob Faibussowitsch {
776bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
777b1d57f15SBarry Smith   PetscMPIInt  n;
778b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
779e44c0bd4SBarry Smith   PetscInt    *row, *col;
780c0edf612SJunchao Zhang   PetscBool    all_assembled;
78187828ca2SBarry Smith   PetscScalar *val;
782bc5ccf88SSatish Balay 
78391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7846e111a19SKarl Rupp 
785bc5ccf88SSatish Balay   PetscFunctionBegin;
7864cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
787a2d1c673SSatish Balay     while (1) {
7889566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
789a2d1c673SSatish Balay       if (!flg) break;
790a2d1c673SSatish Balay 
791bc5ccf88SSatish Balay       for (i = 0; i < n;) {
792bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7932205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7942205254eSKarl Rupp           if (row[j] != rstart) break;
7952205254eSKarl Rupp         }
796bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
797bc5ccf88SSatish Balay         else ncols = n - i;
798bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7999566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
800bc5ccf88SSatish Balay         i = j;
801bc5ccf88SSatish Balay       }
802bc5ccf88SSatish Balay     }
8039566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
804bc5ccf88SSatish Balay   }
8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
806c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8079ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8089ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8109566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8119ecce9b1SRichard Tran Mills   }
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
815bc5ccf88SSatish Balay 
816b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
817071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
818bc5ccf88SSatish Balay   /*
819bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
820b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
821bc5ccf88SSatish Balay   */
822bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
823c0edf612SJunchao Zhang     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
824c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
825eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
826ad59fb31SSatish Balay     }
827ad59fb31SSatish Balay   }
82848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
831c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
832e2cf4d64SStefano Zampini #endif
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
835bc5ccf88SSatish Balay 
8369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8372205254eSKarl Rupp 
838f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
839a30b2313SHong Zhang 
8409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
841e56f5c9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
843f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
845462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
848c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
849e2cf4d64SStefano Zampini #endif
8503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
851bc5ccf88SSatish Balay }
852bc5ccf88SSatish Balay 
853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
854d71ae5a4SJacob Faibussowitsch {
85544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8563a40ed3dSBarry Smith 
8573a40ed3dSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8599566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8611eb62cbbSBarry Smith }
8621eb62cbbSBarry Smith 
863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
864d71ae5a4SJacob Faibussowitsch {
8651b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8661b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8676e520ac8SStefano Zampini   PetscInt    r, len;
8689939a2d1SBarry Smith   PetscBool   cong;
8691eb62cbbSBarry Smith 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
8716e520ac8SStefano Zampini   /* get locally owned rows */
8729566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8739566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
874dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87597b48c8fSBarry Smith   if (x && b) {
8761b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8771b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8781b1dd7adSMatthew G. Knepley 
87928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8819566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8821b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88597b48c8fSBarry Smith   }
886a92ad425SStefano Zampini 
887a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
890a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
892a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
893a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
894a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
895a92ad425SStefano Zampini 
896a92ad425SStefano Zampini     nnwA = aijA->nonew;
897a92ad425SStefano Zampini     nnwB = aijB->nonew;
898a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
899a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
900a92ad425SStefano Zampini     if (!nnzA) {
9019566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
902a92ad425SStefano Zampini       aijA->nonew = 0;
903a92ad425SStefano Zampini     }
904a92ad425SStefano Zampini     if (!nnzB) {
9059566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
906a92ad425SStefano Zampini       aijB->nonew = 0;
907a92ad425SStefano Zampini     }
908a92ad425SStefano Zampini     /* Must zero here before the next loop */
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9109566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9111b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9121b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
913a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9149566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
915e2d53e46SBarry Smith     }
916a92ad425SStefano Zampini     aijA->nonew = nnwA;
917a92ad425SStefano Zampini     aijB->nonew = nnwB;
9186eb55b6aSBarry Smith   } else {
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9209566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9216eb55b6aSBarry Smith   }
9229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9254f9cfa9eSBarry Smith 
9269939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
927f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9289939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
929462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9309939a2d1SBarry Smith   }
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9321eb62cbbSBarry Smith }
9331eb62cbbSBarry Smith 
934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
935d71ae5a4SJacob Faibussowitsch {
9369c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9376497c311SBarry Smith   PetscInt           n = A->rmap->n;
938131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
940131c27b5Sprj-   PetscMPIInt        p = 0;
94154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94254bd4135SMatthew G. Knepley   PetscSF            sf;
9439c7c4993SBarry Smith   const PetscScalar *xx;
944fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
945564f14d6SBarry Smith   Vec                xmask, lmask;
946564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
947564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
948564f14d6SBarry Smith   PetscScalar       *aa;
9499c7c4993SBarry Smith 
9509c7c4993SBarry Smith   PetscFunctionBegin;
95154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
957aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9585ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9599566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9605ba17502SJed Brown     }
96154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9639c7c4993SBarry Smith   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
97054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9719371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9729371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
973564f14d6SBarry Smith   /* zero diagonal part of matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9754cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9779566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
984a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
985a92ad425SStefano Zampini     PetscBool cong;
986a92ad425SStefano Zampini 
9879566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
993377aa5a1SBarry Smith   }
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9954cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
997564f14d6SBarry Smith   ii = aij->i;
9988e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
999564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
1000564f14d6SBarry Smith   if (aij->compressedrow.use) {
1001564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1002564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1003564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1004564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1005564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1006564f14d6SBarry Smith       aj = aij->j + ii[i];
1007fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1008564f14d6SBarry Smith 
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith       ridx++;
1018564f14d6SBarry Smith     }
1019564f14d6SBarry Smith   } else { /* do not use compressed row format */
1020564f14d6SBarry Smith     m = l->B->rmap->n;
1021564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1022564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1023564f14d6SBarry Smith       aj = aij->j + ii[i];
1024fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1025564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1027377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1028564f14d6SBarry Smith           *aa = 0.0;
1029564f14d6SBarry Smith         }
1030564f14d6SBarry Smith         aa++;
1031564f14d6SBarry Smith         aj++;
1032564f14d6SBarry Smith       }
1033564f14d6SBarry Smith     }
1034564f14d6SBarry Smith   }
1035a92ad425SStefano Zampini   if (x && b) {
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1038377aa5a1SBarry Smith   }
10399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10434f9cfa9eSBarry Smith 
10444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1045f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1047462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10484f9cfa9eSBarry Smith   }
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10509c7c4993SBarry Smith }
10519c7c4993SBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1053d71ae5a4SJacob Faibussowitsch {
1054416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055b1d57f15SBarry Smith   PetscInt    nt;
105619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1057416022c9SBarry Smith 
10583a40ed3dSBarry Smith   PetscFunctionBegin;
10599566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
106008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1062296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1064296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10661eb62cbbSBarry Smith }
10671eb62cbbSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1069d71ae5a4SJacob Faibussowitsch {
1070bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071bd0c2dcbSBarry Smith 
1072bd0c2dcbSBarry Smith   PetscFunctionBegin;
10739566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075bd0c2dcbSBarry Smith }
1076bd0c2dcbSBarry Smith 
1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1078d71ae5a4SJacob Faibussowitsch {
1079416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
108001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10813a40ed3dSBarry Smith 
10823a40ed3dSBarry Smith   PetscFunctionBegin;
10839566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10849566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088da3a660dSBarry Smith }
1089da3a660dSBarry Smith 
1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1091d71ae5a4SJacob Faibussowitsch {
1092416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1093da3a660dSBarry Smith 
10943a40ed3dSBarry Smith   PetscFunctionBegin;
1095da3a660dSBarry Smith   /* do nondiagonal part */
10969566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1097da3a660dSBarry Smith   /* do local part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10999613dc34SJunchao Zhang   /* add partial results together */
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1103da3a660dSBarry Smith }
1104da3a660dSBarry Smith 
1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1106d71ae5a4SJacob Faibussowitsch {
11074f423910Svictorle   MPI_Comm    comm;
1108ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1109ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1110cd0d46ebSvictorle   IS          Me, Notme;
1111b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111254d735aeSStefano Zampini   PetscBool   lf;
1113b1d57f15SBarry Smith   PetscMPIInt size;
1114cd0d46ebSvictorle 
1115cd0d46ebSvictorle   PetscFunctionBegin;
111642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1118462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11193ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11223ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112342e5f5b4Svictorle 
11247dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1128cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1129cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113366501d38Svictorle   Aoff = Aoffs[0];
11349566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113566501d38Svictorle   Boff = Boffs[0];
11369566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11389566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11419566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1143cd0d46ebSvictorle }
1144cd0d46ebSvictorle 
1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1146d71ae5a4SJacob Faibussowitsch {
1147416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1148da3a660dSBarry Smith 
11493a40ed3dSBarry Smith   PetscFunctionBegin;
1150da3a660dSBarry Smith   /* do nondiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1152da3a660dSBarry Smith   /* do local part */
11539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11549613dc34SJunchao Zhang   /* add partial results together */
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11569566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158da3a660dSBarry Smith }
1159da3a660dSBarry Smith 
11601eb62cbbSBarry Smith /*
11611eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11621eb62cbbSBarry Smith    diagonal block
11631eb62cbbSBarry Smith */
1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1165d71ae5a4SJacob Faibussowitsch {
1166416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
116908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1170aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11719566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11731eb62cbbSBarry Smith }
11741eb62cbbSBarry Smith 
1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1176d71ae5a4SJacob Faibussowitsch {
1177052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11783a40ed3dSBarry Smith 
11793a40ed3dSBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11819566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1183052efed2SBarry Smith }
1184052efed2SBarry Smith 
1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1186d71ae5a4SJacob Faibussowitsch {
11878e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11898e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11903ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11912e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119317a3732bSBarry Smith   PetscInt64         nz, hnz;
11943ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11953ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11963ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119717a3732bSBarry Smith   PetscMPIInt        rank;
11988e2fed03SBarry Smith 
11998e2fed03SBarry Smith   PetscFunctionBegin;
12009566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12013ea6fe3dSLisandro Dalcin 
12023ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12033ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12043ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12053ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12063ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12078e2fed03SBarry Smith   nz = A->nz + B->nz;
12083ea6fe3dSLisandro Dalcin 
12093ea6fe3dSLisandro Dalcin   /* write matrix header */
12100700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12119371c9d4SSatish Balay   header[1] = M;
12129371c9d4SSatish Balay   header[2] = N;
121317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1215835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12203ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12238e2fed03SBarry Smith 
12243ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12263ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12273ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12283ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12293ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12308e2fed03SBarry Smith     }
12319371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12329371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12338e2fed03SBarry Smith   }
123417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12378e2fed03SBarry Smith 
12383ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12423ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12433ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12443ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12452e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12468e2fed03SBarry Smith     }
12479371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12489371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12498e2fed03SBarry Smith   }
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125217a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12558e2fed03SBarry Smith 
12563ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12579566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12598e2fed03SBarry Smith }
12608e2fed03SBarry Smith 
12619804daf3SBarry Smith #include <petscdraw.h>
1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1263d71ae5a4SJacob Faibussowitsch {
126444a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126532dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1266*9f196a02SMartin Diehl   PetscBool         isdraw, isascii, isbinary;
1267b0a32e0cSBarry Smith   PetscViewer       sviewer;
1268f3ef73ceSBarry Smith   PetscViewerFormat format;
1269416022c9SBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
1272*9f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1274*9f196a02SMartin Diehl   if (isascii) {
12759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1276ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12771690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1280835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1281ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1282ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1283ef5fdb51SBarry Smith         navg += nz[i];
1284ef5fdb51SBarry Smith       }
12859566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1286ef5fdb51SBarry Smith       navg = navg / size;
12879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1289ef5fdb51SBarry Smith     }
12909566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1291456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12924e220ebcSLois Curfman McInnes       MatInfo   info;
12936335e310SSatish Balay       PetscInt *inodes = NULL;
1294923f20ffSKris Buschelman 
12959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12969566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12979566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1299923f20ffSKris Buschelman       if (!inodes) {
13009371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1301835f2295SStefano Zampini                                                      info.memory));
13026831982aSBarry Smith       } else {
1303835f2295SStefano Zampini         PetscCall(
1304835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13056831982aSBarry Smith       }
13069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1315fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1316923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13179566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1318923f20ffSKris Buschelman       if (inodes) {
13199566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1320d38fa0fbSBarry Smith       } else {
13219566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1322d38fa0fbSBarry Smith       }
13233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13244aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132608480c60SBarry Smith     }
13278e2fed03SBarry Smith   } else if (isbinary) {
13288e2fed03SBarry Smith     if (size == 1) {
13299566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13309566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13318e2fed03SBarry Smith     } else {
13329566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13338e2fed03SBarry Smith     }
13343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1335*9f196a02SMartin Diehl   } else if (isascii && size == 1) {
13369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13379566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13390f5bd95cSBarry Smith   } else if (isdraw) {
1340b0a32e0cSBarry Smith     PetscDraw draw;
1341ace3abfcSBarry Smith     PetscBool isnull;
13429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134519bcc07fSBarry Smith   }
134619bcc07fSBarry Smith 
134771e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134871e56450SStefano Zampini     Mat A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow, iscol;
13502ee70a88SLois Curfman McInnes 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13549566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135571e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135671e56450SStefano Zampini     /*
135771e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135871e56450SStefano Zampini     IS  isrow,iscol;
135971e56450SStefano Zampini 
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13619566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1363dd400576SPatrick Sanan     if (rank == 0) {
13649566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136571e56450SStefano Zampini        A    = AA[0];
136671e56450SStefano Zampini        Av   = AA[0];
136795373324SBarry Smith     }
13689566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136971e56450SStefano Zampini */
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137255843e3eSBarry Smith     /*
137355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1374b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137555843e3eSBarry Smith     */
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1377dd400576SPatrick Sanan     if (rank == 0) {
137848a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13799566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
138095373324SBarry Smith     }
13819566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138395373324SBarry Smith   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13851eb62cbbSBarry Smith }
13861eb62cbbSBarry Smith 
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1388d71ae5a4SJacob Faibussowitsch {
1389*9f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1390416022c9SBarry Smith 
13913a40ed3dSBarry Smith   PetscFunctionBegin;
1392*9f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
1396*9f196a02SMartin Diehl   if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398416022c9SBarry Smith }
1399416022c9SBarry Smith 
1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1401d71ae5a4SJacob Faibussowitsch {
140244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1403f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1404ace3abfcSBarry Smith   PetscBool   hasop;
14058a729477SBarry Smith 
14063a40ed3dSBarry Smith   PetscFunctionBegin;
1407a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14089566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1410a2b30743SBarry Smith   }
1411a2b30743SBarry Smith 
141248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14134e980039SJed Brown 
1414c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang 
14202798e883SHong Zhang     while (its--) {
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14232798e883SHong Zhang 
1424c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14272798e883SHong Zhang 
1428c14dc6b6SHong Zhang       /* local sweep */
14299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14302798e883SHong Zhang     }
14313a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1432da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14342798e883SHong Zhang       its--;
1435da3a660dSBarry Smith     }
14362798e883SHong Zhang     while (its--) {
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14392798e883SHong Zhang 
1440c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1443c14dc6b6SHong Zhang 
1444c14dc6b6SHong Zhang       /* local sweep */
14459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14462798e883SHong Zhang     }
14473a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1448da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14502798e883SHong Zhang       its--;
1451da3a660dSBarry Smith     }
14522798e883SHong Zhang     while (its--) {
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14552798e883SHong Zhang 
1456c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14579566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14592798e883SHong Zhang 
1460c14dc6b6SHong Zhang       /* local sweep */
14619566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14622798e883SHong Zhang     }
1463a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1464a7420bb7SBarry Smith     Vec xx1;
1465a7420bb7SBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1468a7420bb7SBarry Smith 
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1471a7420bb7SBarry Smith     if (!mat->diag) {
14729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1474a7420bb7SBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1476bd0c2dcbSBarry Smith     if (hasop) {
14779566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1478bd0c2dcbSBarry Smith     } else {
14799566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1480bd0c2dcbSBarry Smith     }
14819566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1482887ee2caSBarry Smith 
14839566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1484a7420bb7SBarry Smith 
1485a7420bb7SBarry Smith     /* local sweep */
14869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1489ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1490c14dc6b6SHong Zhang 
14919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1492a0808db4SHong Zhang 
14937b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14958a729477SBarry Smith }
1496a66be287SLois Curfman McInnes 
1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1498d71ae5a4SJacob Faibussowitsch {
149972e6a0cfSJed Brown   Mat             aA, aB, Aperm;
150072e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150172e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150272e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150372e6a0cfSJed Brown   PetscSF         rowsf, sf;
15040298fd71SBarry Smith   IS              parcolp = NULL;
150572e6a0cfSJed Brown   PetscBool       done;
150642e855d1Svictor 
150742e855d1Svictor   PetscFunctionBegin;
15089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151272e6a0cfSJed Brown 
151372e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151772e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
152072e6a0cfSJed Brown 
152172e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152572e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152972e6a0cfSJed Brown 
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15329566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153372e6a0cfSJed Brown 
153472e6a0cfSJed Brown   /* Find out where my gcols should go */
15359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154372e6a0cfSJed Brown 
15449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15469566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154772e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1548131c27b5Sprj-     PetscInt    row = rdest[i];
1549131c27b5Sprj-     PetscMPIInt rowner;
15509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155172e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1552131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1553131c27b5Sprj-       PetscMPIInt cowner;
15549566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155672e6a0cfSJed Brown       else onnz[i]++;
155772e6a0cfSJed Brown     }
155872e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1559131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1560131c27b5Sprj-       PetscMPIInt cowner;
15619566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156272e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156372e6a0cfSJed Brown       else onnz[i]++;
156472e6a0cfSJed Brown     }
156572e6a0cfSJed Brown   }
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15709566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157172e6a0cfSJed Brown 
15729566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157572e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157672e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1577970468b0SJed Brown     PetscInt  j0, rowlen;
157872e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1584970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1585970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15869566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1587970468b0SJed Brown     }
158872e6a0cfSJed Brown   }
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15979566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15989566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159972e6a0cfSJed Brown   *B = Aperm;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160142e855d1Svictor }
160242e855d1Svictor 
1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1604d71ae5a4SJacob Faibussowitsch {
1605c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1606c5e4d11fSDmitry Karpeev 
1607c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1609c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611c5e4d11fSDmitry Karpeev }
1612c5e4d11fSDmitry Karpeev 
1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1614d71ae5a4SJacob Faibussowitsch {
1615a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1616a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16173966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1618a66be287SLois Curfman McInnes 
16193a40ed3dSBarry Smith   PetscFunctionBegin;
16204e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16222205254eSKarl Rupp 
16239371c9d4SSatish Balay   isend[0] = info->nz_used;
16249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16269371c9d4SSatish Balay   isend[3] = info->memory;
16279371c9d4SSatish Balay   isend[4] = info->mallocs;
16282205254eSKarl Rupp 
16299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16302205254eSKarl Rupp 
16319371c9d4SSatish Balay   isend[0] += info->nz_used;
16329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16349371c9d4SSatish Balay   isend[3] += info->memory;
16359371c9d4SSatish Balay   isend[4] += info->mallocs;
1636a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1642a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1643462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16442205254eSKarl Rupp 
16454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1650a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1651462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16522205254eSKarl Rupp 
16534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1658a66be287SLois Curfman McInnes   }
16594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a66be287SLois Curfman McInnes }
1664a66be287SLois Curfman McInnes 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1666d71ae5a4SJacob Faibussowitsch {
1667c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1668c74985f6SBarry Smith 
16693a40ed3dSBarry Smith   PetscFunctionBegin;
167012c028f9SKris Buschelman   switch (op) {
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1674a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16760ad02fcaSStefano Zampini   case MAT_USE_INODES:
167712c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16781a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1679fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168212c028f9SKris Buschelman     break;
168312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168443674050SBarry Smith     MatCheckPreallocated(A, 1);
16854e0d8c25SBarry Smith     a->roworiented = flg;
16862205254eSKarl Rupp 
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168912c028f9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1691d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1694ffa07934SHong Zhang   case MAT_SPD:
169577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1697bf108f30SBarry Smith   case MAT_HERMITIAN:
1698bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1700b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1701b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17029725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170377e54ba9SKris Buschelman     break;
1704d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1705d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1706d71ae5a4SJacob Faibussowitsch     break;
1707d71ae5a4SJacob Faibussowitsch   default:
1708888c827cSStefano Zampini     break;
17093a40ed3dSBarry Smith   }
17103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1711c74985f6SBarry Smith }
1712c74985f6SBarry Smith 
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1714d71ae5a4SJacob Faibussowitsch {
1715154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1717d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1718d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1719b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172039e00950SLois Curfman McInnes 
17213a40ed3dSBarry Smith   PetscFunctionBegin;
172228b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17237a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17247a0afa10SBarry Smith 
172570f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17267a0afa10SBarry Smith     /*
17277a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17287a0afa10SBarry Smith     */
17297a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1730b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1731d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17327a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17332205254eSKarl Rupp       if (max < tmp) max = tmp;
17347a0afa10SBarry Smith     }
17359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17367a0afa10SBarry Smith   }
17377a0afa10SBarry Smith 
1738aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1739abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174039e00950SLois Curfman McInnes 
17419371c9d4SSatish Balay   pvA = &vworkA;
17429371c9d4SSatish Balay   pcA = &cworkA;
17439371c9d4SSatish Balay   pvB = &vworkB;
17449371c9d4SSatish Balay   pcB = &cworkB;
17459371c9d4SSatish Balay   if (!v) {
17469371c9d4SSatish Balay     pvA = NULL;
17479371c9d4SSatish Balay     pvB = NULL;
17489371c9d4SSatish Balay   }
17499371c9d4SSatish Balay   if (!idx) {
17509371c9d4SSatish Balay     pcA = NULL;
17519371c9d4SSatish Balay     if (!v) pcB = NULL;
17529371c9d4SSatish Balay   }
17539566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17549566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1755154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1756154123eaSLois Curfman McInnes 
175770f0671dSBarry Smith   cmap = mat->garray;
1758154123eaSLois Curfman McInnes   if (v || idx) {
1759154123eaSLois Curfman McInnes     if (nztot) {
1760154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1761b1d57f15SBarry Smith       PetscInt imark = -1;
1762154123eaSLois Curfman McInnes       if (v) {
176370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176439e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1766154123eaSLois Curfman McInnes           else break;
1767154123eaSLois Curfman McInnes         }
1768154123eaSLois Curfman McInnes         imark = i;
176970f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177070f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1771154123eaSLois Curfman McInnes       }
1772154123eaSLois Curfman McInnes       if (idx) {
177370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177470f0671dSBarry Smith         if (imark > -1) {
1775ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177670f0671dSBarry Smith         } else {
1777154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177870f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1779154123eaSLois Curfman McInnes             else break;
1780154123eaSLois Curfman McInnes           }
1781154123eaSLois Curfman McInnes           imark = i;
178270f0671dSBarry Smith         }
178370f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178470f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178539e00950SLois Curfman McInnes       }
17863f97c4b0SBarry Smith     } else {
1787f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1788f4259b30SLisandro Dalcin       if (v) *v = NULL;
17891ca473b0SSatish Balay     }
1790154123eaSLois Curfman McInnes   }
179139e00950SLois Curfman McInnes   *nz = nztot;
17929566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17939566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179539e00950SLois Curfman McInnes }
179639e00950SLois Curfman McInnes 
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1798d71ae5a4SJacob Faibussowitsch {
17997a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18003a40ed3dSBarry Smith 
18013a40ed3dSBarry Smith   PetscFunctionBegin;
180228b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18037a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180539e00950SLois Curfman McInnes }
180639e00950SLois Curfman McInnes 
1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1808d71ae5a4SJacob Faibussowitsch {
1809855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1810ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1811d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1812329f5518SBarry Smith   PetscReal        sum = 0.0;
1813fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181404ca555eSLois Curfman McInnes 
18153a40ed3dSBarry Smith   PetscFunctionBegin;
181617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18179566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181837fa93a5SLois Curfman McInnes   } else {
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1822fff043a9SJunchao Zhang       v = amata;
182304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18249371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18259371c9d4SSatish Balay         v++;
182604ca555eSLois Curfman McInnes       }
1827fff043a9SJunchao Zhang       v = bmata;
182804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18299371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18309371c9d4SSatish Balay         v++;
183104ca555eSLois Curfman McInnes       }
1832462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18338f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18349566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18353a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1836e91c04dfSPierre Jolivet       PetscReal *tmp;
1837b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18389566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
183904ca555eSLois Curfman McInnes       *norm = 0.0;
18409371c9d4SSatish Balay       v     = amata;
18419371c9d4SSatish Balay       jj    = amat->j;
184204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18439371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18449371c9d4SSatish Balay         v++;
184504ca555eSLois Curfman McInnes       }
18469371c9d4SSatish Balay       v  = bmata;
18479371c9d4SSatish Balay       jj = bmat->j;
184804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18499371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18509371c9d4SSatish Balay         v++;
185104ca555eSLois Curfman McInnes       }
1852e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1853d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1854e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
185504ca555eSLois Curfman McInnes       }
18569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18579566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18583a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1859329f5518SBarry Smith       PetscReal ntemp = 0.0;
1860d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18618e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186204ca555eSLois Curfman McInnes         sum = 0.0;
186304ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18649371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18659371c9d4SSatish Balay           v++;
186604ca555eSLois Curfman McInnes         }
18678e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186804ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18699371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18709371c9d4SSatish Balay           v++;
187104ca555eSLois Curfman McInnes         }
1872515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187304ca555eSLois Curfman McInnes       }
1874462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18759566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1876ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187937fa93a5SLois Curfman McInnes   }
18803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1881855ac2c5SLois Curfman McInnes }
1882855ac2c5SLois Curfman McInnes 
1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1884d71ae5a4SJacob Faibussowitsch {
1885a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1886a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1887071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1888071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1889a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1890ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1891b7c46309SBarry Smith 
18923a40ed3dSBarry Smith   PetscFunctionBegin;
18937fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18949371c9d4SSatish Balay   ma = A->rmap->n;
18959371c9d4SSatish Balay   na = A->cmap->n;
18969371c9d4SSatish Balay   mb = a->B->rmap->n;
18979371c9d4SSatish Balay   nb = a->B->cmap->n;
18989371c9d4SSatish Balay   ai = Aloc->i;
18999371c9d4SSatish Balay   aj = Aloc->j;
19009371c9d4SSatish Balay   bi = Bloc->i;
19019371c9d4SSatish Balay   bj = Bloc->j;
1902fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190380bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190480bcc5a1SJed Brown     PetscSFNode         *oloc;
1905713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190680bcc5a1SJed Brown 
19079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190880bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1910cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191180bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191380bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191480bcc5a1SJed Brown     /* map those to global */
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19219566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1922d4bb536fSBarry Smith 
19239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
192558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs));
19269566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19289566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1929fc4dec0aSBarry Smith   } else {
1930fc4dec0aSBarry Smith     B = *matout;
19319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1932fc4dec0aSBarry Smith   }
1933b7c46309SBarry Smith 
1934f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1935a8661f62Sandi selinger   A_diag      = a->A;
1936a8661f62Sandi selinger   B_diag      = &b->A;
1937a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1938a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1939a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1940a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1941f79cb1a0Sandi selinger 
1942f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1943ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1944f79cb1a0Sandi selinger 
19454cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1946a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19477fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19489566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1949f79cb1a0Sandi selinger 
1950b7c46309SBarry Smith   /* copy over the B part */
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1953ce496241SStefano Zampini   pbv = bv;
1954d0f46423SBarry Smith   row = A->rmap->rstart;
19552205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195661a2fbbaSHong Zhang   cols_tmp = cols;
1957da668accSHong Zhang   for (i = 0; i < mb; i++) {
1958da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19599566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19602205254eSKarl Rupp     row++;
1961720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1962720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1963b7c46309SBarry Smith   }
19649566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1966fc73b1b3SBarry Smith 
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1969cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19700de55854SLois Curfman McInnes     *matout = B;
19710de55854SLois Curfman McInnes   } else {
19729566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19730de55854SLois Curfman McInnes   }
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975b7c46309SBarry Smith }
1976b7c46309SBarry Smith 
1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1978d71ae5a4SJacob Faibussowitsch {
19794b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19804b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1981b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1982a008b906SSatish Balay 
19833a40ed3dSBarry Smith   PetscFunctionBegin;
19849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19854b967eb1SSatish Balay   if (rr) {
19869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198708401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19884b967eb1SSatish Balay     /* Overlap communication with computation. */
19899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1990a008b906SSatish Balay   }
19914b967eb1SSatish Balay   if (ll) {
19929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199308401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1994dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19954b967eb1SSatish Balay   }
19964b967eb1SSatish Balay   /* scale  the diagonal block */
1997dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19984b967eb1SSatish Balay 
19994b967eb1SSatish Balay   if (rr) {
20004b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20019566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2002dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20034b967eb1SSatish Balay   }
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005a008b906SSatish Balay }
2006a008b906SSatish Balay 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2008d71ae5a4SJacob Faibussowitsch {
2009bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20103a40ed3dSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2014bb5a7306SBarry Smith }
2015bb5a7306SBarry Smith 
2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2017d71ae5a4SJacob Faibussowitsch {
2018d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2019d4bb536fSBarry Smith   Mat         a, b, c, d;
2020ace3abfcSBarry Smith   PetscBool   flg;
2021d4bb536fSBarry Smith 
20223a40ed3dSBarry Smith   PetscFunctionBegin;
20239371c9d4SSatish Balay   a = matA->A;
20249371c9d4SSatish Balay   b = matA->B;
20259371c9d4SSatish Balay   c = matB->A;
20269371c9d4SSatish Balay   d = matB->B;
2027d4bb536fSBarry Smith 
20289566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2030462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2032d4bb536fSBarry Smith }
2033d4bb536fSBarry Smith 
2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2035d71ae5a4SJacob Faibussowitsch {
2036cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2037cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2038cb5b572fSBarry Smith 
2039cb5b572fSBarry Smith   PetscFunctionBegin;
204033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204133f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2042cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2043cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2044cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2045cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2046cb5b572fSBarry Smith        then copying the submatrices */
20479566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2048cb5b572fSBarry Smith   } else {
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2051cb5b572fSBarry Smith   }
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2054cb5b572fSBarry Smith }
2055cb5b572fSBarry Smith 
2056001ddc4fSHong Zhang /*
2057001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2058001ddc4fSHong Zhang    have different nonzero structure.
2059001ddc4fSHong Zhang */
2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2061d71ae5a4SJacob Faibussowitsch {
2062001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206395b7e79eSJed Brown 
206495b7e79eSJed Brown   PetscFunctionBegin;
206595b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206695b7e79eSJed Brown   for (i = 0; i < m; i++) {
20678e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2068001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2069001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207095b7e79eSJed Brown     nnz[i] = 0;
207195b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2072001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2073001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207495b7e79eSJed Brown       nnz[i]++;
207595b7e79eSJed Brown     }
207695b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207795b7e79eSJed Brown   }
20783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207995b7e79eSJed Brown }
208095b7e79eSJed Brown 
2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2083d71ae5a4SJacob Faibussowitsch {
2084001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2087001ddc4fSHong Zhang 
2088001ddc4fSHong Zhang   PetscFunctionBegin;
20899566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2091001ddc4fSHong Zhang }
2092001ddc4fSHong Zhang 
2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2094d71ae5a4SJacob Faibussowitsch {
2095ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2096ac90fabeSBarry Smith 
2097ac90fabeSBarry Smith   PetscFunctionBegin;
2098ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2101ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2103ac90fabeSBarry Smith   } else {
21049f5f6813SShri Abhyankar     Mat       B;
21059f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2106d9d719b4SStefano Zampini 
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21179566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2120ac90fabeSBarry Smith   }
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122ac90fabeSBarry Smith }
2123ac90fabeSBarry Smith 
21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2125354c94deSBarry Smith 
2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2127d71ae5a4SJacob Faibussowitsch {
21285f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21295f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2130354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2131354c94deSBarry Smith 
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21339566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21345f80ce2aSJacob Faibussowitsch   }
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2136354c94deSBarry Smith }
2137354c94deSBarry Smith 
2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2139d71ae5a4SJacob Faibussowitsch {
214099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214199cafbc1SBarry Smith 
214299cafbc1SBarry Smith   PetscFunctionBegin;
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21449566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214699cafbc1SBarry Smith }
214799cafbc1SBarry Smith 
2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2149d71ae5a4SJacob Faibussowitsch {
215099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215199cafbc1SBarry Smith 
215299cafbc1SBarry Smith   PetscFunctionBegin;
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21549566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215699cafbc1SBarry Smith }
215799cafbc1SBarry Smith 
2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2159d71ae5a4SJacob Faibussowitsch {
2160c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2161475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216262e5df07SMark Adams   PetscScalar       *vv;
2163475b8b61SHong Zhang   Vec                vB, vA;
216462e5df07SMark Adams   const PetscScalar *va, *vb;
2165c91732d9SHong Zhang 
2166c91732d9SHong Zhang   PetscFunctionBegin;
2167c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2169475b8b61SHong Zhang 
217062e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2171c91732d9SHong Zhang   if (idx) {
2172475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2173d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2174c91732d9SHong Zhang     }
2175c91732d9SHong Zhang   }
2176c91732d9SHong Zhang 
2177c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21799566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2180c91732d9SHong Zhang 
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2183475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2184c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2185475b8b61SHong Zhang       vv[i] = vb[i];
2186c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2187475b8b61SHong Zhang     } else {
2188475b8b61SHong Zhang       vv[i] = va[i];
21899371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2190c91732d9SHong Zhang     }
2191c91732d9SHong Zhang   }
219262e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219362e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21959566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199c91732d9SHong Zhang }
2200c91732d9SHong Zhang 
2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2202eede4a3fSMark Adams {
2203eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
27888bb0f5c6SPierre Jolivet                                        /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
27928bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPIAIJ,
27938bb0f5c6SPierre Jolivet                                        /*69*/ MatGetRowMinAbs_MPIAIJ,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f4259b30SLisandro Dalcin                                        NULL,
27968bb0f5c6SPierre Jolivet                                        MatFDColoringApply_AIJ,
2797b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2798f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
27998bb0f5c6SPierre Jolivet                                        /*75*/ NULL,
28008bb0f5c6SPierre Jolivet                                        NULL,
28018bb0f5c6SPierre Jolivet                                        NULL,
28028bb0f5c6SPierre Jolivet                                        MatLoad_MPIAIJ,
28038bb0f5c6SPierre Jolivet                                        NULL,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28078bb0f5c6SPierre Jolivet                                        /*83*/ NULL,
2808f4259b30SLisandro Dalcin                                        NULL,
280926be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
28108bb0f5c6SPierre Jolivet                                        MatPtAPNumeric_MPIAIJ_MPIAIJ,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
28138bb0f5c6SPierre Jolivet                                        /*89*/ MatBindToCPU_MPIAIJ,
28148bb0f5c6SPierre Jolivet                                        MatProductSetFromOptions_MPIAIJ,
2815f4259b30SLisandro Dalcin                                        NULL,
2816f4259b30SLisandro Dalcin                                        NULL,
28172fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
28188bb0f5c6SPierre Jolivet                                        /*94*/ NULL,
28198bb0f5c6SPierre Jolivet                                        MatSetValuesRow_MPIAIJ,
282099cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
282169db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2822f4259b30SLisandro Dalcin                                        NULL,
28238bb0f5c6SPierre Jolivet                                        /*99*/ NULL,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28265494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
28288bb0f5c6SPierre Jolivet                                        /*104*/ MatMissingDiagonal_MPIAIJ,
28298bb0f5c6SPierre Jolivet                                        MatGetSeqNonzeroStructure_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2832f4259b30SLisandro Dalcin                                        NULL,
28338bb0f5c6SPierre Jolivet                                        /*109*/ NULL,
28348bb0f5c6SPierre Jolivet                                        MatMultDiagonalBlock_MPIAIJ,
2835f4259b30SLisandro Dalcin                                        NULL,
2836f4259b30SLisandro Dalcin                                        NULL,
2837f4259b30SLisandro Dalcin                                        NULL,
28388bb0f5c6SPierre Jolivet                                        /*114*/ MatGetMultiProcBlock_MPIAIJ,
28398bb0f5c6SPierre Jolivet                                        MatFindNonzeroRows_MPIAIJ,
2840a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2841bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2842a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28438bb0f5c6SPierre Jolivet                                        /*119*/ MatCreateSubMatricesMPI_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2847f4259b30SLisandro Dalcin                                        NULL,
28488bb0f5c6SPierre Jolivet                                        /*124*/ NULL,
2849f4259b30SLisandro Dalcin                                        NULL,
2850f4259b30SLisandro Dalcin                                        NULL,
28518bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_MPIAIJ,
2852f4259b30SLisandro Dalcin                                        NULL,
28538bb0f5c6SPierre Jolivet                                        /*129*/ MatFDColoringSetUp_MPIXAIJ,
2854a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28554222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2856f4259b30SLisandro Dalcin                                        NULL,
285772833a62Smarkadams4                                        NULL,
28588bb0f5c6SPierre Jolivet                                        /*134*/ NULL,
285972833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28602d776b49SBarry Smith                                        NULL,
2861eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28624cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
28638bb0f5c6SPierre Jolivet                                        /*139*/ NULL,
286442ce410bSJunchao Zhang                                        NULL,
286542ce410bSJunchao Zhang                                        NULL,
286603db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
286703db1824SAlex Lindsay                                        MatGetCurrentMemType_MPIAIJ};
286836ce4990SBarry Smith 
2869ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2870d71ae5a4SJacob Faibussowitsch {
28712e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28722e8a6d31SBarry Smith 
28732e8a6d31SBarry Smith   PetscFunctionBegin;
28749566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28759566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28772e8a6d31SBarry Smith }
28782e8a6d31SBarry Smith 
2879ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2880d71ae5a4SJacob Faibussowitsch {
28812e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28822e8a6d31SBarry Smith 
28832e8a6d31SBarry Smith   PetscFunctionBegin;
28849566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28859566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28872e8a6d31SBarry Smith }
28888a729477SBarry Smith 
2889d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2890d71ae5a4SJacob Faibussowitsch {
2891ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28925d2a9ed1SStefano Zampini   PetscMPIInt size;
2893a23d5eceSKris Buschelman 
2894a23d5eceSKris Buschelman   PetscFunctionBegin;
2895ad79cf63SBarry Smith   if (B->hash_active) {
2896aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2897ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2898ad79cf63SBarry Smith   }
28999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2901899cda47SBarry Smith 
2902cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2903eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2904cb7b82ddSBarry Smith #else
29059566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2906cb7b82ddSBarry Smith #endif
29079566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29089566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29099566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2910cb7b82ddSBarry Smith 
29119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2912c508b908SBarry Smith 
2913c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29149566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29159566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29169566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29179566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29189566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2919c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2920cb7b82ddSBarry Smith 
2921c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2922ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29239566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29249566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29269566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2927c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2928899cda47SBarry Smith 
29299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2931526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2932cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293315001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2935a23d5eceSKris Buschelman }
2936a23d5eceSKris Buschelman 
2937ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2938d71ae5a4SJacob Faibussowitsch {
2939ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29404c51d546SAlexander   PetscBool   ondiagreset, offdiagreset, memoryreset;
2941846b4da1SFande Kong 
2942846b4da1SFande Kong   PetscFunctionBegin;
2943846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29444c51d546SAlexander   PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()");
29454c51d546SAlexander   if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
29464c51d546SAlexander 
29474c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset));
29484c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset));
29494c51d546SAlexander   memoryreset = (PetscBool)(ondiagreset || offdiagreset);
29504c51d546SAlexander   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B)));
29514c51d546SAlexander   if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS);
29524c51d546SAlexander 
29539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
29554c51d546SAlexander   PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled");
29564c51d546SAlexander   PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
29579566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2958846b4da1SFande Kong 
2959846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2960846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2961846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
2962b3a35320SAlex Lindsay   /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */
2963b3a35320SAlex Lindsay   PetscCall(PetscObjectStateIncrease((PetscObject)B));
29643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2965846b4da1SFande Kong }
2966846b4da1SFande Kong 
2967d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2968d71ae5a4SJacob Faibussowitsch {
2969d6dfbf8fSBarry Smith   Mat         mat;
2970416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2971d6dfbf8fSBarry Smith 
29723a40ed3dSBarry Smith   PetscFunctionBegin;
2973f4259b30SLisandro Dalcin   *newmat = NULL;
29749566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29759566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29769566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29779566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2978273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2979e1b6402fSHong Zhang 
2980d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2981501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2982e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2983d6dfbf8fSBarry Smith 
298417699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298517699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2986e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2987e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2988501880eeSStefano Zampini   a->rowindices   = NULL;
2989501880eeSStefano Zampini   a->rowvalues    = NULL;
2990bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2991d6dfbf8fSBarry Smith 
29929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2994420957c1SBarry Smith   if (matin->hash_active) {
2995420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2996420957c1SBarry Smith   } else {
2997420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29982ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2999aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3000eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3001b1fc9764SSatish Balay #else
30029566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30039566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3004b1fc9764SSatish Balay #endif
3005501880eeSStefano Zampini     } else a->colmap = NULL;
30063f41c07dSBarry Smith     if (oldmat->garray) {
3007b1d57f15SBarry Smith       PetscInt len;
3008d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30109566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3011501880eeSStefano Zampini     } else a->garray = NULL;
3012d6dfbf8fSBarry Smith 
30130de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30140de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30150de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3016aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3017cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3018cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3019cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3020cff58d65SJunchao Zhang     }
30219566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30229566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3023420957c1SBarry Smith   }
30249566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30258a729477SBarry Smith   *newmat = mat;
30263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30278a729477SBarry Smith }
3028416022c9SBarry Smith 
3029d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3030d71ae5a4SJacob Faibussowitsch {
303152f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
303252f91c60SVaclav Hapla 
303352f91c60SVaclav Hapla   PetscFunctionBegin;
303452f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303552f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3036c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30379566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30389566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30399566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
304052f91c60SVaclav Hapla   if (isbinary) {
30419566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
304252f91c60SVaclav Hapla   } else if (ishdf5) {
304352f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30449566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304552f91c60SVaclav Hapla #else
304652f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304752f91c60SVaclav Hapla #endif
304852f91c60SVaclav Hapla   } else {
304998921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
305052f91c60SVaclav Hapla   }
30513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
305252f91c60SVaclav Hapla }
305352f91c60SVaclav Hapla 
3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3055d71ae5a4SJacob Faibussowitsch {
30563ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30573ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30583ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30598fb81238SShri Abhyankar 
30608fb81238SShri Abhyankar   PetscFunctionBegin;
30619566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30628fb81238SShri Abhyankar 
30633ea6fe3dSLisandro Dalcin   /* read in matrix header */
30649566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306508401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30669371c9d4SSatish Balay   M  = header[1];
30679371c9d4SSatish Balay   N  = header[2];
30689371c9d4SSatish Balay   nz = header[3];
306908401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
307008401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
307108401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
307208ea439dSMark F. Adams 
30733ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30749566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30753ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30763ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30773ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30808fb81238SShri Abhyankar 
30813ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30829566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3083aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30848fb81238SShri Abhyankar 
30853ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30889566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30899371c9d4SSatish Balay   rowidxs[0] = 0;
30909371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
30911690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3092462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309308401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309438b83642SBarry Smith   }
309538b83642SBarry Smith 
30963ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30989566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31003ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31019566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31029566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31039566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31058fb81238SShri Abhyankar }
31068fb81238SShri Abhyankar 
31073782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3108ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3109d71ae5a4SJacob Faibussowitsch {
31104aa3045dSJed Brown   IS          iscol_local;
3111c5e4d11fSDmitry Karpeev   PetscBool   isstride;
31129725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
31133782ecc7SHong Zhang 
31143782ecc7SHong Zhang   PetscFunctionBegin;
31153782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31173782ecc7SHong Zhang 
3118c5e4d11fSDmitry Karpeev   if (isstride) {
3119c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31209566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31219566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31229566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31239725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3124c5e4d11fSDmitry Karpeev   }
31253782ecc7SHong Zhang 
31269725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3127c5e4d11fSDmitry Karpeev   if (gisstride) {
3128c5e4d11fSDmitry Karpeev     PetscInt N;
31299566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31309566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31319566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31329566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3133c5e4d11fSDmitry Karpeev   } else {
3134c5bfad50SMark F. Adams     PetscInt cbs;
31359566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31369566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31379566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3138b79d0421SJed Brown   }
31393782ecc7SHong Zhang 
31403782ecc7SHong Zhang   *isseq = iscol_local;
31413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3142c5e4d11fSDmitry Karpeev }
31438d2139bdSHong Zhang 
3144ddfdf956SHong Zhang /*
31459c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31469c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3147ddfdf956SHong Zhang 
3148ddfdf956SHong Zhang  Input Parameters:
314927430b45SBarry Smith +   mat - matrix
315027430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31519c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
315227430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3153ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315427430b45SBarry Smith 
315527430b45SBarry Smith  Output Parameters:
315627430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315727430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315827430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315927430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3160ddfdf956SHong Zhang  */
3161835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3162d71ae5a4SJacob Faibussowitsch {
3163040216a4SHong Zhang   Vec             x, cmap;
3164040216a4SHong Zhang   const PetscInt *is_idx;
3165040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31669c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3167040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3168040216a4SHong Zhang   Mat             B    = a->B;
3169040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3170a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31718b3fa1f7SHong Zhang   MPI_Comm        comm;
31723a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31733782ecc7SHong Zhang 
31743782ecc7SHong Zhang   PetscFunctionBegin;
31759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31778b3fa1f7SHong Zhang 
3178ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31799566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31809566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31819566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31829566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31830a351717SHong Zhang 
31849c988bcaSHong Zhang   /* Get start indices */
31859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3186ddfdf956SHong Zhang   isstart -= ncols;
31879566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3188040216a4SHong Zhang 
31899566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31909566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31919566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3193ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31948b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3195ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31969c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31978b3fa1f7SHong Zhang   }
31989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32009566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32018b3fa1f7SHong Zhang 
32029c988bcaSHong Zhang   /* Get iscol_d */
32039566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32049566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32059566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3206feb78a15SHong Zhang 
32079c988bcaSHong Zhang   /* Get isrow_d */
32089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3209feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32119566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32129c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3214feb78a15SHong Zhang 
32159566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32169566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32179566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3218feb78a15SHong Zhang 
32199c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32209566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32219566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3222ddfdf956SHong Zhang 
32239566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322407250d77SHong Zhang 
32259566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32269566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322764efcef9SHong Zhang 
32289c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3229ddfdf956SHong Zhang   /* off-process column indices */
32309c988bcaSHong Zhang   count = 0;
32319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3233feb78a15SHong Zhang 
32349566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32368b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3237f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32389c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32391c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32401c645242SHong Zhang       count++;
32418b3fa1f7SHong Zhang     }
32428b3fa1f7SHong Zhang   }
32439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324507250d77SHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3247b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3248b6d9b4e0SHong Zhang 
32499566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32509c988bcaSHong Zhang   *garray = cmap1;
32519c988bcaSHong Zhang 
32529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3256040216a4SHong Zhang }
3257040216a4SHong Zhang 
3258b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3260d71ae5a4SJacob Faibussowitsch {
3261b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32621fd43edeSHong Zhang   Mat         M = NULL;
32633b00a383SHong Zhang   MPI_Comm    comm;
3264b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32653b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3266c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32673b00a383SHong Zhang 
32683b00a383SHong Zhang   PetscFunctionBegin;
32699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32703b00a383SHong Zhang 
32713b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3272b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327428b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32753b00a383SHong Zhang 
32769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327728b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32783b00a383SHong Zhang 
32799566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
328028b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32813b00a383SHong Zhang 
3282b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3283b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32859566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328648a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32893b00a383SHong Zhang 
32903b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3291c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3292b20e2604SHong Zhang     PetscInt  BsubN;
32933b00a383SHong Zhang 
3294b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32959566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32963b00a383SHong Zhang 
3297b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32989566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32999566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33003b00a383SHong Zhang 
3301c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3302c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3303c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3304c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3305c0c276a7Ssdargavi 
33069c988bcaSHong Zhang     /* Create submatrix M */
3307c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3308c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3309c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
33103b00a383SHong Zhang 
3311b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3312b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33137cfce09cSHong Zhang 
33149566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3315b20e2604SHong Zhang     n = asub->B->cmap->N;
3316b20e2604SHong Zhang     if (BsubN > n) {
3317c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33187cfce09cSHong Zhang       const PetscInt *idx;
33199c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33209566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33217cfce09cSHong Zhang 
33229566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33237cfce09cSHong Zhang       j = 0;
33249566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3325b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33267cfce09cSHong Zhang         if (j >= BsubN) break;
33279c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33287cfce09cSHong Zhang 
33299c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33307cfce09cSHong Zhang           idx_new[i] = idx[j++];
333198921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33327cfce09cSHong Zhang       }
33339566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33347cfce09cSHong Zhang 
33359566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33369566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33377cfce09cSHong Zhang 
3338b20e2604SHong Zhang     } else if (BsubN < n) {
333998921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3340b20e2604SHong Zhang     }
33417cfce09cSHong Zhang 
33429566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3343b20e2604SHong Zhang     *submat = M;
33443b00a383SHong Zhang 
3345e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33483b00a383SHong Zhang 
33499566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33509566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33513b00a383SHong Zhang 
33529566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33539566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33543b00a383SHong Zhang   }
33553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33563b00a383SHong Zhang }
33573b00a383SHong Zhang 
3358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3359d71ae5a4SJacob Faibussowitsch {
33601358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33613782ecc7SHong Zhang   PetscInt  csize;
336218e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33634a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33643782ecc7SHong Zhang   MPI_Comm  comm;
33653782ecc7SHong Zhang 
33663782ecc7SHong Zhang   PetscFunctionBegin;
3367bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3368a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33698f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3371d5761cdaSHong Zhang     if (isrow_d) {
3372d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3373d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3374d5761cdaSHong Zhang     } else {
33759566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3376d5761cdaSHong Zhang       if (iscol_local) {
3377d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3378d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3379d5761cdaSHong Zhang       }
3380d5761cdaSHong Zhang     }
33818f69fa7bSHong Zhang   } else {
3382e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
338318e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33849566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33853782ecc7SHong Zhang     if (!n) {
338618e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33873782ecc7SHong Zhang     } else {
33889566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33899566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3390ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33918f69fa7bSHong Zhang     }
33923782ecc7SHong Zhang 
3393e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
339418e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33959566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
339618e627e3SHong Zhang     if (!n) {
339718e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
339818e627e3SHong Zhang     } else {
33999566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
34009566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
340118e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
340218e627e3SHong Zhang     }
340318e627e3SHong Zhang 
34049566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3405462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
340618e627e3SHong Zhang     sameRowDist = tsameDist[0];
340718e627e3SHong Zhang   }
340818e627e3SHong Zhang 
340918e627e3SHong Zhang   if (sameRowDist) {
3410b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34113b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34129566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34133ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3414b20e2604SHong Zhang     } else { /* sameRowDist */
34153b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34161358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34171358a193SHong Zhang         PetscBool sorted;
34189566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34199566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34209566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
342108401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34221358a193SHong Zhang 
34239566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34241358a193SHong Zhang         if (sorted) {
34251358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34269566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34273ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34283782ecc7SHong Zhang         }
34291358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
343048c0d076SHong Zhang         IS iscol_sub;
34319566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
343248c0d076SHong Zhang         if (iscol_sub) {
34339566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34343ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
343548c0d076SHong Zhang         }
34361358a193SHong Zhang       }
34371358a193SHong Zhang     }
34381358a193SHong Zhang   }
34393782ecc7SHong Zhang 
3440bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34413782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34429566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
344328b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34443782ecc7SHong Zhang   } else {
344548a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34461358a193SHong Zhang   }
34473782ecc7SHong Zhang 
34489566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34499566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34508f69fa7bSHong Zhang 
3451b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34529566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34539566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3454b79d0421SJed Brown   }
34553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34564aa3045dSJed Brown }
34574aa3045dSJed Brown 
3458feb78a15SHong Zhang /*@C
345911a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3460feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3461feb78a15SHong Zhang 
3462d083f849SBarry Smith   Collective
3463feb78a15SHong Zhang 
3464feb78a15SHong Zhang   Input Parameters:
3465feb78a15SHong Zhang + comm   - MPI communicator
3466c0c276a7Ssdargavi . M      - the global row size
3467c0c276a7Ssdargavi . N      - the global column size
3468feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3469c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3470a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter.
3471feb78a15SHong Zhang 
3472feb78a15SHong Zhang   Output Parameter:
34732ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
347427430b45SBarry Smith 
3475feb78a15SHong Zhang   Level: advanced
3476feb78a15SHong Zhang 
3477feb78a15SHong Zhang   Notes:
347811a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
347911a5261eSBarry Smith 
3480c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3481feb78a15SHong Zhang 
3482a3156c1cSJunchao Zhang   If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update
3483a3156c1cSJunchao Zhang   `B`'s copy on device.  We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or
3484a3156c1cSJunchao Zhang   `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray`
3485a3156c1cSJunchao Zhang   yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`.
3486a3156c1cSJunchao Zhang 
3487b1dff882SJunchao Zhang   The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others.
3488b1dff882SJunchao Zhang 
34891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3490feb78a15SHong Zhang @*/
3491c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3492d71ae5a4SJacob Faibussowitsch {
3493c0c276a7Ssdargavi   PetscInt    m, n;
34944ab4d6f4SRichard Tran Mills   MatType     mpi_mat_type;
3495f18d1d10SJunchao Zhang   Mat_MPIAIJ *mpiaij;
3496f18d1d10SJunchao Zhang   Mat         C;
3497feb78a15SHong Zhang 
3498feb78a15SHong Zhang   PetscFunctionBegin;
3499f18d1d10SJunchao Zhang   PetscCall(MatCreate(comm, &C));
35009566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
350108401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
350258b7e2c1SStefano Zampini   PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3503feb78a15SHong Zhang 
3504f18d1d10SJunchao Zhang   PetscCall(MatSetSizes(C, m, n, M, N));
35054ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35064ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
3507f18d1d10SJunchao Zhang   PetscCall(MatSetType(C, mpi_mat_type));
3508a3156c1cSJunchao Zhang   if (!garray) {
3509a3156c1cSJunchao Zhang     const PetscScalar *ba;
3510a3156c1cSJunchao Zhang 
3511a3156c1cSJunchao Zhang     B->nonzerostate++;
3512a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */
3513a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3514a3156c1cSJunchao Zhang   }
35154ab4d6f4SRichard Tran Mills 
3516f18d1d10SJunchao Zhang   PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs));
3517f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->rmap));
3518f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->cmap));
3519feb78a15SHong Zhang 
3520f18d1d10SJunchao Zhang   mpiaij              = (Mat_MPIAIJ *)C->data;
3521c0c276a7Ssdargavi   mpiaij->A           = A;
3522c0c276a7Ssdargavi   mpiaij->B           = B;
3523c0c276a7Ssdargavi   mpiaij->garray      = garray;
3524f18d1d10SJunchao Zhang   C->preallocated     = PETSC_TRUE;
3525f18d1d10SJunchao Zhang   C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3526c0c276a7Ssdargavi 
3527f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3528f18d1d10SJunchao Zhang   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3529c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3530c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3531c0c276a7Ssdargavi    */
3532f18d1d10SJunchao Zhang   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3533f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3534f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
3535f18d1d10SJunchao Zhang   *mat = C;
35363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3537feb78a15SHong Zhang }
3538feb78a15SHong Zhang 
3539ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35404aa3045dSJed Brown 
3541d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3542d71ae5a4SJacob Faibussowitsch {
354398b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354485f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354598b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35461fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354798b658c4SHong Zhang   MatScalar      *aa;
354800e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3549a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355098b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355198b658c4SHong Zhang   IS              iscol_sub, iscmap;
355298b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355318e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3554a31a438cSHong Zhang   MPI_Comm        comm;
35557e2c5f70SBarry Smith 
3556a0ff6018SBarry Smith   PetscFunctionBegin;
35579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3558d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35599566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356028b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35619566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3562d5761cdaSHong Zhang 
35639566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356428b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3565d5761cdaSHong Zhang 
35669566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356728b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3568d5761cdaSHong Zhang 
35699566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3570d5761cdaSHong Zhang 
3571d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35723b00a383SHong Zhang     PetscBool flg;
35733b00a383SHong Zhang 
35749566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35759566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3576bcae8d28SHong Zhang 
35773b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3578366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35799566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3580366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3581462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3582366a327dSHong Zhang     if (allcolumns) {
3583366a327dSHong Zhang       iscol_sub = iscol_local;
35849566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35859566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3586366a327dSHong Zhang 
35873b00a383SHong Zhang     } else {
35881358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3589244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35919566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35929566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35938d2139bdSHong Zhang       count = 0;
3594a31a438cSHong Zhang       k     = 0;
3595a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3596a31a438cSHong Zhang         j = is_idx[i];
3597a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3598a31a438cSHong Zhang           /* diagonal part of mat */
35998d2139bdSHong Zhang           idx[count]     = j;
3600366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36014a3daf6eSHong Zhang         } else if (Bn) {
3602a31a438cSHong Zhang           /* off-diagonal part of mat */
3603a31a438cSHong Zhang           if (j == garray[k]) {
36048d2139bdSHong Zhang             idx[count]     = j;
3605a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3606a31a438cSHong Zhang           } else if (j > garray[k]) {
3607a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3608a31a438cSHong Zhang             if (j == garray[k]) {
3609a31a438cSHong Zhang               idx[count]     = j;
3610a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36118d2139bdSHong Zhang             }
36128d2139bdSHong Zhang           }
36138d2139bdSHong Zhang         }
36148d2139bdSHong Zhang       }
36159566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36168d2139bdSHong Zhang 
36179566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36189566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36199566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3620b6d9b4e0SHong Zhang 
36219566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3622a31a438cSHong Zhang     }
36238b3fa1f7SHong Zhang 
36243b00a383SHong Zhang     /* (3) Create sequential Msub */
36259566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3626d5761cdaSHong Zhang   }
36278d2139bdSHong Zhang 
36289566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
362957508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
363098b658c4SHong Zhang   ii  = aij->i;
36319566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3632a0ff6018SBarry Smith 
3633a0ff6018SBarry Smith   /*
3634a0ff6018SBarry Smith       m - number of local rows
3635a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3636a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3637a0ff6018SBarry Smith   */
36389566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
363998b658c4SHong Zhang 
36403b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36413b00a383SHong Zhang     /* (4) Create parallel newmat */
364298b658c4SHong Zhang     PetscMPIInt rank, size;
3643bcae8d28SHong Zhang     PetscInt    csize;
364498b658c4SHong Zhang 
36459566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364700e6dbe6SBarry Smith 
3648a0ff6018SBarry Smith     /*
364900e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365000e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3651a0ff6018SBarry Smith     */
365200e6dbe6SBarry Smith 
365300e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36549566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36556a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36569566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3657a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3658e2c4fddaSBarry Smith         nlocal = m;
36596a6a5d1dSBarry Smith       } else {
3660a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3661ab50ec6bSBarry Smith       }
3662ab50ec6bSBarry Smith     } else {
36636a6a5d1dSBarry Smith       nlocal = csize;
36646a6a5d1dSBarry Smith     }
36659566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366600e6dbe6SBarry Smith     rstart = rend - nlocal;
3667aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
366800e6dbe6SBarry Smith 
366900e6dbe6SBarry Smith     /* next, compute all the lengths */
367098b658c4SHong Zhang     jj = aij->j;
36719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367200e6dbe6SBarry Smith     olens = dlens + m;
367300e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367400e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367500e6dbe6SBarry Smith       olen = 0;
367600e6dbe6SBarry Smith       dlen = 0;
367700e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
367815b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
367900e6dbe6SBarry Smith         else dlen++;
368000e6dbe6SBarry Smith         jj++;
368100e6dbe6SBarry Smith       }
368200e6dbe6SBarry Smith       olens[i] = olen;
368300e6dbe6SBarry Smith       dlens[i] = dlen;
368400e6dbe6SBarry Smith     }
3685b6d9b4e0SHong Zhang 
36869566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36879566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
368898b658c4SHong Zhang 
36899566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36909566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36919566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36929566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36939566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36949566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3695d5761cdaSHong Zhang 
3696d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3697a0ff6018SBarry Smith     M = *newmat;
36989566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
369908401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37009566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3701c48de900SBarry Smith     /*
3702c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3703c48de900SBarry Smith        rather than the slower MatSetValues().
3704c48de900SBarry Smith     */
3705c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3706c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3707a0ff6018SBarry Smith   }
3708548ecf4dSHong Zhang 
37093b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37119566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371298b658c4SHong Zhang 
371398b658c4SHong Zhang   jj = aij->j;
37149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3715a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3716a0ff6018SBarry Smith     row = rstart + i;
371700e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
371815b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37199566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37209371c9d4SSatish Balay     jj += nz;
37219371c9d4SSatish Balay     aa += nz;
3722a0ff6018SBarry Smith   }
37239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3725a0ff6018SBarry Smith 
37269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3728fee21e36SBarry Smith 
37299566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373098b658c4SHong Zhang 
373198b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3732fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37333b00a383SHong Zhang     *newmat = M;
3734f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37359566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373698b658c4SHong Zhang 
3737f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37389566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
373998b658c4SHong Zhang 
3740f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37419566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3742bcae8d28SHong Zhang 
3743bcae8d28SHong Zhang     if (iscol_local) {
3744f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37459566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3746bcae8d28SHong Zhang     }
374798b658c4SHong Zhang   }
37483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3749a0ff6018SBarry Smith }
3750273d9f13SBarry Smith 
3751df40acb1SHong Zhang /*
3752df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3753df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3754df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3755df40acb1SHong Zhang 
375611a5261eSBarry Smith   This requires a sequential iscol with all indices.
3757df40acb1SHong Zhang */
3758d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3759d71ae5a4SJacob Faibussowitsch {
3760df40acb1SHong Zhang   PetscMPIInt rank, size;
3761df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3762df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3763df40acb1SHong Zhang   Mat         M, Mreuse;
376498b658c4SHong Zhang   MatScalar  *aa, *vwork;
3765df40acb1SHong Zhang   MPI_Comm    comm;
3766df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37670b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3768df40acb1SHong Zhang 
3769df40acb1SHong Zhang   PetscFunctionBegin;
37709566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3773df40acb1SHong Zhang 
37740b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37759566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37770b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3778462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37790b27a90eSHong Zhang 
3780df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37819566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378228b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37839566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3784df40acb1SHong Zhang   } else {
37859566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3786df40acb1SHong Zhang   }
3787df40acb1SHong Zhang 
3788df40acb1SHong Zhang   /*
3789df40acb1SHong Zhang       m - number of local rows
3790df40acb1SHong Zhang       n - number of columns (same on all processors)
3791df40acb1SHong Zhang       rstart - first row in new global matrix generated
3792df40acb1SHong Zhang   */
37939566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37949566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3795df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
379657508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3797df40acb1SHong Zhang     ii  = aij->i;
3798df40acb1SHong Zhang     jj  = aij->j;
3799df40acb1SHong Zhang 
3800df40acb1SHong Zhang     /*
3801df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3802df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3803df40acb1SHong Zhang     */
3804df40acb1SHong Zhang 
3805df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3806df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38079566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3808df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3809df40acb1SHong Zhang         nlocal = m;
3810df40acb1SHong Zhang       } else {
3811df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3812df40acb1SHong Zhang       }
3813df40acb1SHong Zhang     } else {
3814df40acb1SHong Zhang       nlocal = csize;
3815df40acb1SHong Zhang     }
38169566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3817df40acb1SHong Zhang     rstart = rend - nlocal;
3818aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3819df40acb1SHong Zhang 
3820df40acb1SHong Zhang     /* next, compute all the lengths */
38219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3822df40acb1SHong Zhang     olens = dlens + m;
3823df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3824df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3825df40acb1SHong Zhang       olen = 0;
3826df40acb1SHong Zhang       dlen = 0;
3827df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3828df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3829df40acb1SHong Zhang         else dlen++;
3830df40acb1SHong Zhang         jj++;
3831df40acb1SHong Zhang       }
3832df40acb1SHong Zhang       olens[i] = olen;
3833df40acb1SHong Zhang       dlens[i] = dlen;
3834df40acb1SHong Zhang     }
38359566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38369566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38379566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38389566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38399566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38409566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3841df40acb1SHong Zhang   } else {
3842df40acb1SHong Zhang     PetscInt ml, nl;
3843df40acb1SHong Zhang 
3844df40acb1SHong Zhang     M = *newmat;
38459566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384608401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38479566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3848df40acb1SHong Zhang     /*
3849df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3850df40acb1SHong Zhang        rather than the slower MatSetValues().
3851df40acb1SHong Zhang     */
3852df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3853df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3854df40acb1SHong Zhang   }
38559566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
385657508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3857df40acb1SHong Zhang   ii  = aij->i;
3858df40acb1SHong Zhang   jj  = aij->j;
38592e5835c6SStefano Zampini 
38602e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38619566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3862df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3863df40acb1SHong Zhang     row   = rstart + i;
3864df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38659371c9d4SSatish Balay     cwork = jj;
38668e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38679371c9d4SSatish Balay     vwork = aa;
38688e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38699566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3870df40acb1SHong Zhang   }
38719566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3872df40acb1SHong Zhang 
38739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3875df40acb1SHong Zhang   *newmat = M;
3876df40acb1SHong Zhang 
3877df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3878df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38799566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38809566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3881df40acb1SHong Zhang   }
38823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3883df40acb1SHong Zhang }
3884df40acb1SHong Zhang 
3885ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3886d71ae5a4SJacob Faibussowitsch {
38876a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38889f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3889ccd8e176SBarry Smith   const PetscInt *JJ;
3890eeb24464SBarry Smith   PetscBool       nooffprocentries;
38916a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3892ccd8e176SBarry Smith 
3893ccd8e176SBarry Smith   PetscFunctionBegin;
38949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3896d0f46423SBarry Smith   m       = B->rmap->n;
3897d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3898d0f46423SBarry Smith   cend    = B->cmap->rend;
3899d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39009f0612e4SBarry Smith   irstart = Ii[0];
3901899cda47SBarry Smith 
39029566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3903ccd8e176SBarry Smith 
390476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39058f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3906ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39079f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
390808401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
390908401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391008401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3911ecc77c7aSBarry Smith     }
391276bd3646SJed Brown   }
3913ecc77c7aSBarry Smith 
39148f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3915b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39169f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3917ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3918ccd8e176SBarry Smith     d       = 0;
39190daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39200daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3921ccd8e176SBarry Smith     }
3922ccd8e176SBarry Smith     d_nnz[i] = d;
3923ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3924ccd8e176SBarry Smith   }
39259566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3927ccd8e176SBarry Smith 
39288f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3929ccd8e176SBarry Smith     ii = i + rstart;
39309f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3931ccd8e176SBarry Smith   }
3932eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3933eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3936eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3937ccd8e176SBarry Smith 
39386a3d2595SBarry Smith   /* count number of entries below block diagonal */
39396a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39406a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39416a3d2595SBarry Smith   Aij->ld = ld;
39426a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39436a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39446a3d2595SBarry Smith     j   = 0;
3945ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39466a3d2595SBarry Smith     ld[i] = j;
3947720a2405SPierre Jolivet     if (J) J += nnz;
39486a3d2595SBarry Smith   }
39496a3d2595SBarry Smith 
39509566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3952ccd8e176SBarry Smith }
3953ccd8e176SBarry Smith 
39541eea217eSSatish Balay /*@
395511a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3956ccd8e176SBarry Smith   (the default parallel PETSc format).
3957ccd8e176SBarry Smith 
3958d083f849SBarry Smith   Collective
3959ccd8e176SBarry Smith 
3960ccd8e176SBarry Smith   Input Parameters:
3961a1661176SMatthew Knepley + B - the matrix
3962d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3963d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3964ccd8e176SBarry Smith - v - optional values in the matrix
3965ccd8e176SBarry Smith 
3966ccd8e176SBarry Smith   Level: developer
3967ccd8e176SBarry Smith 
396812251496SSatish Balay   Notes:
39692ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39702ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397212251496SSatish Balay 
39732ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397412251496SSatish Balay 
3975a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3976a4bd8bc0SBarry Smith 
3977a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3978a4bd8bc0SBarry Smith 
3979a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3980a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3981a4bd8bc0SBarry Smith 
398212251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398312251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3984c5e4d11fSDmitry Karpeev   as shown
398527430b45SBarry Smith .vb
398627430b45SBarry Smith         1 0 0
398727430b45SBarry Smith         2 0 3     P0
398827430b45SBarry Smith        -------
398927430b45SBarry Smith         4 5 6     P1
399027430b45SBarry Smith 
399127430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399227430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399327430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399427430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399527430b45SBarry Smith 
399627430b45SBarry Smith      Process1 [P1] rows_owned=[2]
399727430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
399827430b45SBarry Smith         j =  {0,1,2}  [size = 3]
399927430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400027430b45SBarry Smith .ve
400112251496SSatish Balay 
4002fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4003a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4004ccd8e176SBarry Smith @*/
4005d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4006d71ae5a4SJacob Faibussowitsch {
4007ccd8e176SBarry Smith   PetscFunctionBegin;
4008cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4010ccd8e176SBarry Smith }
4011ccd8e176SBarry Smith 
40125d83a8b1SBarry Smith /*@
401311a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4014273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4015273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401620f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4017273d9f13SBarry Smith 
4018d083f849SBarry Smith   Collective
4019273d9f13SBarry Smith 
4020273d9f13SBarry Smith   Input Parameters:
40211c4f3114SJed Brown + B     - the matrix
4022273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4023273d9f13SBarry Smith            (same value is used for all local rows)
4024273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4025273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40262ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4027273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40283287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40293287b5eaSJed Brown            the diagonal entry even if it is zero.
4030273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4031273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4032273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4033273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40342ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4035273d9f13SBarry Smith            structure. The size of this array is equal to the number
4036273d9f13SBarry Smith            of local rows, i.e 'm'.
4037273d9f13SBarry Smith 
40382920cce0SJacob Faibussowitsch   Example Usage:
403927430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404027430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404127430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404227430b45SBarry Smith   as follows
404327430b45SBarry Smith 
404427430b45SBarry Smith .vb
404527430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404627430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
404727430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
404827430b45SBarry Smith     -------------------------------------
404927430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405027430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405127430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405227430b45SBarry Smith     -------------------------------------
405327430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405427430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405527430b45SBarry Smith .ve
405627430b45SBarry Smith 
405727430b45SBarry Smith   This can be represented as a collection of submatrices as
405827430b45SBarry Smith .vb
405927430b45SBarry Smith       A B C
406027430b45SBarry Smith       D E F
406127430b45SBarry Smith       G H I
406227430b45SBarry Smith .ve
406327430b45SBarry Smith 
406427430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406527430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406627430b45SBarry Smith 
406727430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406827430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406927430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407027430b45SBarry Smith 
407127430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407227430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407327430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407427430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407527430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40765163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
407727430b45SBarry Smith 
407820f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40795163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40805163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40815163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40825163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408320f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408427430b45SBarry Smith .vb
408527430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408627430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
408727430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
408827430b45SBarry Smith .ve
408920f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409027430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409127430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409227430b45SBarry Smith   34 values.
409327430b45SBarry Smith 
409420f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409527430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409620f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
409727430b45SBarry Smith .vb
409827430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
409927430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410027430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410127430b45SBarry Smith .ve
410227430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410327430b45SBarry Smith   hence pre-allocation is perfect.
410427430b45SBarry Smith 
410527430b45SBarry Smith   Level: intermediate
410627430b45SBarry Smith 
410727430b45SBarry Smith   Notes:
410849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
410949a6f317SBarry Smith 
411027430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41110598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4112651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4113273d9f13SBarry Smith 
4114273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4115273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4116273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4117273d9f13SBarry Smith 
4118273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4119a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4120a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4121a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4122a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4123a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4124a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4125a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4126a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4127273d9f13SBarry Smith 
41282ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4129273d9f13SBarry Smith 
413027430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4131aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413227430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4133aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4134aa95bbe8SBarry Smith 
41351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4136a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4137273d9f13SBarry Smith @*/
4138d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4139d71ae5a4SJacob Faibussowitsch {
4140273d9f13SBarry Smith   PetscFunctionBegin;
41416ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41426ba663aaSJed Brown   PetscValidType(B, 1);
4143cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4145273d9f13SBarry Smith }
4146273d9f13SBarry Smith 
414758d36128SBarry Smith /*@
414811a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41498f8f2f0dSBarry Smith   CSR format for the local rows.
41502fb0ec9aSBarry Smith 
4151d083f849SBarry Smith   Collective
41522fb0ec9aSBarry Smith 
41532fb0ec9aSBarry Smith   Input Parameters:
41542fb0ec9aSBarry Smith + comm - MPI communicator
415511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41562fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4157d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4158d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4159d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4160d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41615693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41625693b835SJunchao Zhang . j    - global column indices
4163f1f2ae84SBarry Smith - a    - optional matrix values
41642fb0ec9aSBarry Smith 
41652fb0ec9aSBarry Smith   Output Parameter:
41662fb0ec9aSBarry Smith . mat - the matrix
416703bfb495SBarry Smith 
41682fb0ec9aSBarry Smith   Level: intermediate
41692fb0ec9aSBarry Smith 
41702fb0ec9aSBarry Smith   Notes:
41712ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4172d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4173d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41742fb0ec9aSBarry Smith 
41752ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417612251496SSatish Balay 
41775693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4178a4bd8bc0SBarry Smith 
41795693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4180a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4181a4bd8bc0SBarry Smith 
418212251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4183d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4184c5e4d11fSDmitry Karpeev   as shown
41852ef1f0ffSBarry Smith .vb
41862ef1f0ffSBarry Smith         1 0 0
41872ef1f0ffSBarry Smith         2 0 3     P0
41882ef1f0ffSBarry Smith        -------
41892ef1f0ffSBarry Smith         4 5 6     P1
41908f8f2f0dSBarry Smith 
41912ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41922ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41932ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41942ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41952fb0ec9aSBarry Smith 
41962ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41972ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41982ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
41992ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42002ef1f0ffSBarry Smith .ve
42012ef1f0ffSBarry Smith 
4202d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42035693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42042fb0ec9aSBarry Smith @*/
4205d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4206d71ae5a4SJacob Faibussowitsch {
42072fb0ec9aSBarry Smith   PetscFunctionBegin;
420808401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
420908401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42109566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42119566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42129566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42139566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42149566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42162fb0ec9aSBarry Smith }
42172fb0ec9aSBarry Smith 
42188f8f2f0dSBarry Smith /*@
421911a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42202ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42212ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42226a3d2595SBarry Smith 
42236a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42248f8f2f0dSBarry Smith 
42258f8f2f0dSBarry Smith   Collective
42268f8f2f0dSBarry Smith 
42278f8f2f0dSBarry Smith   Input Parameters:
42288f8f2f0dSBarry Smith + mat - the matrix
422911a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42308f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423111a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42328f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423311a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423411a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42358f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42368f8f2f0dSBarry Smith . J   - column indices
42378f8f2f0dSBarry Smith - v   - matrix values
42388f8f2f0dSBarry Smith 
42392ef1f0ffSBarry Smith   Level: deprecated
42408f8f2f0dSBarry Smith 
42411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4242a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42438f8f2f0dSBarry Smith @*/
4244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4245d71ae5a4SJacob Faibussowitsch {
42466a3d2595SBarry Smith   PetscInt        nnz, i;
42478f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42488f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4249fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4250fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42518f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42526a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42536a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42548f8f2f0dSBarry Smith 
42558f8f2f0dSBarry Smith   PetscFunctionBegin;
4256aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
425708401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
425808401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
425908401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42608f8f2f0dSBarry Smith 
42619566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42629566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42638f8f2f0dSBarry Smith 
42648f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42654c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42664c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42674c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42684c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42694c17f1ccSBarry Smith       }
42704c17f1ccSBarry Smith     }
42718f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42728f8f2f0dSBarry Smith     Iii = Ii[i];
42738f8f2f0dSBarry Smith     ldi = ld[i];
42748f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42759566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42769566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42779566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42788f8f2f0dSBarry Smith     ad += md;
42798f8f2f0dSBarry Smith     ao += nnz - md;
42808f8f2f0dSBarry Smith   }
42818f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42828f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42859566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42869566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42879566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42908f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42928f8f2f0dSBarry Smith }
42938f8f2f0dSBarry Smith 
42946a3d2595SBarry Smith /*@
429511a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42966a3d2595SBarry Smith 
42976a3d2595SBarry Smith   Collective
42986a3d2595SBarry Smith 
42996a3d2595SBarry Smith   Input Parameters:
43006a3d2595SBarry Smith + mat - the matrix
43016a3d2595SBarry Smith - v   - matrix values, stored by row
43026a3d2595SBarry Smith 
43036a3d2595SBarry Smith   Level: intermediate
43046a3d2595SBarry Smith 
4305a4bd8bc0SBarry Smith   Notes:
43066a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43076a3d2595SBarry Smith 
4308a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4309a4bd8bc0SBarry Smith 
43101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4311a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43126a3d2595SBarry Smith @*/
4313d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4314d71ae5a4SJacob Faibussowitsch {
43156a3d2595SBarry Smith   PetscInt        nnz, i, m;
43166a3d2595SBarry Smith   PetscBool       nooffprocentries;
43176a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43186a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43196a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43206a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43216a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43226a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43236a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43246a3d2595SBarry Smith 
43256a3d2595SBarry Smith   PetscFunctionBegin;
43266a3d2595SBarry Smith   m = mat->rmap->n;
43276a3d2595SBarry Smith 
43286a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43296a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43306a3d2595SBarry Smith   Iii = 0;
43316a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43326a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43336a3d2595SBarry Smith     ldi = ld[i];
43346a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43356a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43366a3d2595SBarry Smith     ad += md;
4337810441c8SPierre Jolivet     if (ao) {
4338810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4339810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43406a3d2595SBarry Smith       ao += nnz - md;
4341810441c8SPierre Jolivet     }
43426a3d2595SBarry Smith     Iii += nnz;
43436a3d2595SBarry Smith   }
43446a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43456a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43466a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43476a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43486a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43496a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43506a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43516a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43526a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43536a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43556a3d2595SBarry Smith }
43566a3d2595SBarry Smith 
43575d83a8b1SBarry Smith /*@
435811a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4359273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4360273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43612ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4362273d9f13SBarry Smith 
4363d083f849SBarry Smith   Collective
4364273d9f13SBarry Smith 
4365273d9f13SBarry Smith   Input Parameters:
4366273d9f13SBarry Smith + comm  - MPI communicator
436711a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4368273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4369273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4370273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437145f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4372273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
437311a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437411a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4375273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4376273d9f13SBarry Smith           (same value is used for all local rows)
4377273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4378273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43792ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4380273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4381273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4382273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4383273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4384273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43852ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4386273d9f13SBarry Smith           structure. The size of this array is equal to the number
4387273d9f13SBarry Smith           of local rows, i.e 'm'.
4388273d9f13SBarry Smith 
4389273d9f13SBarry Smith   Output Parameter:
4390273d9f13SBarry Smith . A - the matrix
4391273d9f13SBarry Smith 
439227430b45SBarry Smith   Options Database Keys:
439327430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439427430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439527430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4396727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4397727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
439827430b45SBarry Smith 
43992ef1f0ffSBarry Smith   Level: intermediate
44002ef1f0ffSBarry Smith 
440127430b45SBarry Smith   Notes:
440277433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4403f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440411a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4405175b88e8SBarry Smith 
440649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
440749a6f317SBarry Smith 
44082ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44092ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4410273d9f13SBarry Smith   storage requirements for this matrix.
4411273d9f13SBarry Smith 
441211a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4413273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4414273d9f13SBarry Smith   that argument.
4415273d9f13SBarry Smith 
4416727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4417727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4418727bdf9bSBarry Smith 
4419273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4420273d9f13SBarry Smith   (possibly both).
4421273d9f13SBarry Smith 
442233a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4423727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4424727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4425727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
442633a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4427273d9f13SBarry Smith 
442833a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
442933a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4430df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443133a7c187SSatish Balay 
443233a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443333a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443433a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443533a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443633a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443733a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44380b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44390b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
444033a7c187SSatish Balay 
444133a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444233a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444333a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444433a7c187SSatish Balay   local matrix (a rectangular submatrix).
4445273d9f13SBarry Smith 
44462ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4447273d9f13SBarry Smith 
444897d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44492ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4450da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4451da57b5cdSKarl Rupp .vb
44522ef1f0ffSBarry Smith   MatCreate(..., &A);
44532ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44542ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44552ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4456da57b5cdSKarl Rupp .ve
445797d05335SKris Buschelman 
4458273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4459273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4460273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4461273d9f13SBarry Smith 
44622920cce0SJacob Faibussowitsch   Example Usage:
4463273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4464273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4465273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4466efc377ccSKarl Rupp   as follows
4467273d9f13SBarry Smith 
4468273d9f13SBarry Smith .vb
4469273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4470273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4471273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4472273d9f13SBarry Smith     -------------------------------------
4473273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4474273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4475273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4476273d9f13SBarry Smith     -------------------------------------
4477273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4478273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4479273d9f13SBarry Smith .ve
4480273d9f13SBarry Smith 
4481da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4482273d9f13SBarry Smith 
4483273d9f13SBarry Smith .vb
4484273d9f13SBarry Smith       A B C
4485273d9f13SBarry Smith       D E F
4486273d9f13SBarry Smith       G H I
4487273d9f13SBarry Smith .ve
4488273d9f13SBarry Smith 
4489273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4490273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4491273d9f13SBarry Smith 
4492273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4493273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4494273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4495273d9f13SBarry Smith 
4496273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4497273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4498273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4499273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450027430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45015163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4502273d9f13SBarry Smith 
45032ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45045163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45055163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45065163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45075163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45082ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4509273d9f13SBarry Smith .vb
451027430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451127430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451227430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4513273d9f13SBarry Smith .ve
45142ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4515273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4516273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4517273d9f13SBarry Smith   34 values.
4518273d9f13SBarry Smith 
45192ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4520a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4521da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4522273d9f13SBarry Smith .vb
452327430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452427430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452527430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4526273d9f13SBarry Smith .ve
4527273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4528273d9f13SBarry Smith   hence pre-allocation is perfect.
4529273d9f13SBarry Smith 
45301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4531727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4532727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4533273d9f13SBarry Smith @*/
4534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4535d71ae5a4SJacob Faibussowitsch {
4536b1d57f15SBarry Smith   PetscMPIInt size;
4537273d9f13SBarry Smith 
4538273d9f13SBarry Smith   PetscFunctionBegin;
45399566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45409566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4542273d9f13SBarry Smith   if (size > 1) {
45439566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45449566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4545273d9f13SBarry Smith   } else {
45469566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4548273d9f13SBarry Smith   }
45493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4550273d9f13SBarry Smith }
4551195d93cdSBarry Smith 
4552127ca0efSMatthew Knepley /*@C
45530ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4554127ca0efSMatthew Knepley 
45552ef1f0ffSBarry Smith   Not Collective
4556127ca0efSMatthew Knepley 
4557127ca0efSMatthew Knepley   Input Parameter:
455811a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4559127ca0efSMatthew Knepley 
4560127ca0efSMatthew Knepley   Output Parameters:
456111a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
456211a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45632ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4564127ca0efSMatthew Knepley 
45650ab4885dSBarry Smith   Level: intermediate
45660ab4885dSBarry Smith 
456711a5261eSBarry Smith   Note:
45682ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45692ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45702ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4571127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4572127ca0efSMatthew Knepley 
4573ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4574127ca0efSMatthew Knepley @*/
4575d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4576d71ae5a4SJacob Faibussowitsch {
4577195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
457804cf37c7SBarry Smith   PetscBool   flg;
4579b1d57f15SBarry Smith 
4580195d93cdSBarry Smith   PetscFunctionBegin;
45819566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
458228b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
458321e72a00SBarry Smith   if (Ad) *Ad = a->A;
458421e72a00SBarry Smith   if (Ao) *Ao = a->B;
458521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
45863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4587195d93cdSBarry Smith }
4588a2243be0SBarry Smith 
4589d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4590d71ae5a4SJacob Faibussowitsch {
4591110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
45929b8102ccSHong Zhang   PetscInt    *indx;
4593110bb6e1SHong Zhang   PetscScalar *values;
4594421ddf4dSJunchao Zhang   MatType      rootType;
45959b8102ccSHong Zhang 
45969b8102ccSHong Zhang   PetscFunctionBegin;
45979566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4598110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4599110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4600110bb6e1SHong Zhang 
460148a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4602a22543b6SHong Zhang     /* Check sum(n) = N */
4603462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
460408401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4605a22543b6SHong Zhang 
46069566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46079b8102ccSHong Zhang     rstart -= m;
46089b8102ccSHong Zhang 
4609d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46109b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46119566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46129566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46139566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46149b8102ccSHong Zhang     }
46159b8102ccSHong Zhang 
46169566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46179566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46189566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46199566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46209566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46219566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46239566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4624d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46259566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46269b8102ccSHong Zhang   }
46279b8102ccSHong Zhang 
4628110bb6e1SHong Zhang   /* numeric phase */
46299566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46309b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46319566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46329b8102ccSHong Zhang     Ii = i + rstart;
46339566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46349566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46359b8102ccSHong Zhang   }
46369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4639c5d6d63eSBarry Smith }
4640c5d6d63eSBarry Smith 
464149abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4642d71ae5a4SJacob Faibussowitsch {
464349abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
464451a7d1a8SHong Zhang 
464551a7d1a8SHong Zhang   PetscFunctionBegin;
46463ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46479566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46489566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46499566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46509566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46519566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46529566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46539566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46549566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46559566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46569566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46579566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46589566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46609566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
466251a7d1a8SHong Zhang }
466351a7d1a8SHong Zhang 
4664c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4665c6db04a5SJed Brown #include <petscbt.h>
46664ebed01fSBarry Smith 
4667d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4668d71ae5a4SJacob Faibussowitsch {
4669ce94432eSBarry Smith   MPI_Comm             comm;
467055d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4671b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
46726497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
46736497c311SBarry Smith   PetscMPIInt          proc, k;
4674b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
46756497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4676b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
467755d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
467855d1abb9SHong Zhang   MPI_Status          *status;
4679fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4680dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
468155d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4682776b82aeSLisandro Dalcin   PetscContainer       container;
468355d1abb9SHong Zhang 
468455d1abb9SHong Zhang   PetscFunctionBegin;
46859566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
46869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
46873c2c1871SHong Zhang 
46889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
46899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
469055d1abb9SHong Zhang 
46919566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
469228b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
46939566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
46949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4695fff043a9SJunchao Zhang   aa = a_a;
4696bf0cc555SLisandro Dalcin 
469755d1abb9SHong Zhang   bi     = merge->bi;
469855d1abb9SHong Zhang   bj     = merge->bj;
469955d1abb9SHong Zhang   buf_ri = merge->buf_ri;
470055d1abb9SHong Zhang   buf_rj = merge->buf_rj;
470155d1abb9SHong Zhang 
47029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47037a2fc3feSBarry Smith   owners = merge->rowmap->range;
470455d1abb9SHong Zhang   len_s  = merge->len_s;
470555d1abb9SHong Zhang 
470655d1abb9SHong Zhang   /* send and recv matrix values */
47079566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47089566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
470955d1abb9SHong Zhang 
47109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
471155d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
471255d1abb9SHong Zhang     if (!len_s[proc]) continue;
471355d1abb9SHong Zhang     i = owners[proc];
47146497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
471555d1abb9SHong Zhang     k++;
471655d1abb9SHong Zhang   }
471755d1abb9SHong Zhang 
47189566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47199566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47209566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
472155d1abb9SHong Zhang 
47229566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47239566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
472455d1abb9SHong Zhang 
472555d1abb9SHong Zhang   /* insert mat values of mpimat */
47269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
472855d1abb9SHong Zhang 
472955d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
473055d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4731f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
473255d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4733a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
473455d1abb9SHong Zhang   }
473555d1abb9SHong Zhang 
473655d1abb9SHong Zhang   /* set values of ba */
47377a2fc3feSBarry Smith   m = merge->rowmap->n;
473855d1abb9SHong Zhang   for (i = 0; i < m; i++) {
473955d1abb9SHong Zhang     arow = owners[rank] + i;
474055d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
474155d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47429566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
474355d1abb9SHong Zhang 
474455d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
474555d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
474655d1abb9SHong Zhang     aj     = a->j + ai[arow];
4747fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
474855d1abb9SHong Zhang     nextaj = 0;
474955d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
475055d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
475155d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
475255d1abb9SHong Zhang       }
475355d1abb9SHong Zhang     }
475455d1abb9SHong Zhang 
475555d1abb9SHong Zhang     /* add received vals into ba */
475655d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
475755d1abb9SHong Zhang       /* i-th row */
475855d1abb9SHong Zhang       if (i == *nextrow[k]) {
475955d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4760f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4761f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
476255d1abb9SHong Zhang         nextaj = 0;
476355d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
476455d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
476555d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
476655d1abb9SHong Zhang           }
476755d1abb9SHong Zhang         }
47689371c9d4SSatish Balay         nextrow[k]++;
47699371c9d4SSatish Balay         nextai[k]++;
477055d1abb9SHong Zhang       }
477155d1abb9SHong Zhang     }
47729566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
477355d1abb9SHong Zhang   }
47749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
477755d1abb9SHong Zhang 
47789566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47799566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
47809566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
47819566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
47829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
47833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
478455d1abb9SHong Zhang }
478538f152feSBarry Smith 
4786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4787d71ae5a4SJacob Faibussowitsch {
478855a3bba9SHong Zhang   Mat                  B_mpi;
4789c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4790b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4791b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4792d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
47936497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4794c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4795b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
479655d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
479758cb9c82SHong Zhang   MPI_Status          *status;
47980298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4799be0fcf8dSHong Zhang   PetscBT              lnkbt;
480051a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4801776b82aeSLisandro Dalcin   PetscContainer       container;
480202c68681SHong Zhang 
4803e5f2cdd8SHong Zhang   PetscFunctionBegin;
48049566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48053c2c1871SHong Zhang 
480638f152feSBarry Smith   /* make sure it is a PETSc comm */
48079566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
481055d1abb9SHong Zhang 
48119566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4813e5f2cdd8SHong Zhang 
48146abd8857SHong Zhang   /* determine row ownership */
48159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48199566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
482255d1abb9SHong Zhang 
48237a2fc3feSBarry Smith   m      = merge->rowmap->n;
48247a2fc3feSBarry Smith   owners = merge->rowmap->range;
48256abd8857SHong Zhang 
48266abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48273e06a4e6SHong Zhang   len_s = merge->len_s;
482851a7d1a8SHong Zhang 
48292257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4830c2234fe3SHong Zhang   merge->nsend = 0;
48316497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48322257cef7SHong Zhang     len_si[proc] = 0;
48333e06a4e6SHong Zhang     if (proc == rank) {
48346abd8857SHong Zhang       len_s[proc] = 0;
48353e06a4e6SHong Zhang     } else {
48366497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48376497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48383e06a4e6SHong Zhang     }
48393e06a4e6SHong Zhang     if (len_s[proc]) {
4840c2234fe3SHong Zhang       merge->nsend++;
48412257cef7SHong Zhang       nrows = 0;
48422257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48432257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48442257cef7SHong Zhang       }
48456497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48462257cef7SHong Zhang       len += len_si[proc];
4847409913e3SHong Zhang     }
484858cb9c82SHong Zhang   }
4849409913e3SHong Zhang 
48502257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48519566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48529566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4853671beff6SHong Zhang 
48543e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48559566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48569566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
485702c68681SHong Zhang 
48583e06a4e6SHong Zhang   /* post the Isend of j-structure */
48599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48603e06a4e6SHong Zhang 
48616497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4862409913e3SHong Zhang     if (!len_s[proc]) continue;
486302c68681SHong Zhang     i = owners[proc];
48646497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
486551a7d1a8SHong Zhang     k++;
486651a7d1a8SHong Zhang   }
486751a7d1a8SHong Zhang 
48683e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48699566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48709566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
487102c68681SHong Zhang 
487202c68681SHong Zhang   /* send and recv i-structure */
48739566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48749566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
487502c68681SHong Zhang 
48769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48773e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48786497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
487902c68681SHong Zhang     if (!len_s[proc]) continue;
48803e06a4e6SHong Zhang     /* form outgoing message for i-structure:
48813e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
48823e06a4e6SHong Zhang                [1:nrows]:           row index (global)
48833e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
48843e06a4e6SHong Zhang     */
48852257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
48863e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
48873e06a4e6SHong Zhang     buf_si[0]   = nrows;
48883e06a4e6SHong Zhang     buf_si_i[0] = 0;
48893e06a4e6SHong Zhang     nrows       = 0;
48903e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
48913e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
48923e06a4e6SHong Zhang       if (anzi) {
48933e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
48943e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
48953e06a4e6SHong Zhang         nrows++;
48963e06a4e6SHong Zhang       }
48973e06a4e6SHong Zhang     }
48986497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
489902c68681SHong Zhang     k++;
49002257cef7SHong Zhang     buf_si += len_si[proc];
490102c68681SHong Zhang   }
49022257cef7SHong Zhang 
49039566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49049566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
490502c68681SHong Zhang 
49069566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
490748a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49083e06a4e6SHong Zhang 
49099566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49109566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49119566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49129566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49139566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49149566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49159566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
491658cb9c82SHong Zhang 
4917bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
491858cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
492058cb9c82SHong Zhang   bi[0] = 0;
492158cb9c82SHong Zhang 
4922be0fcf8dSHong Zhang   /* create and initialize a linked list */
4923be0fcf8dSHong Zhang   nlnk = N + 1;
49249566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
492558cb9c82SHong Zhang 
4926bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4927bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49289566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49292205254eSKarl Rupp 
493058cb9c82SHong Zhang   current_space = free_space;
493158cb9c82SHong Zhang 
4932bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49341d79065fSBarry Smith 
49353e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49362257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49373e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49383e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4939a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49403e06a4e6SHong Zhang   }
49412257cef7SHong Zhang 
4942d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4943bcc1bcd5SHong Zhang   len = 0;
494458cb9c82SHong Zhang   for (i = 0; i < m; i++) {
494558cb9c82SHong Zhang     bnzi = 0;
494658cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
494758cb9c82SHong Zhang     arow = owners[rank] + i;
494858cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
494958cb9c82SHong Zhang     aj   = a->j + ai[arow];
49509566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
495158cb9c82SHong Zhang     bnzi += nlnk;
495258cb9c82SHong Zhang     /* add received col data into lnk */
495351a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
495455d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49553e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49563e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49579566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49583e06a4e6SHong Zhang         bnzi += nlnk;
49599371c9d4SSatish Balay         nextrow[k]++;
49609371c9d4SSatish Balay         nextai[k]++;
49613e06a4e6SHong Zhang       }
496258cb9c82SHong Zhang     }
4963bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
496458cb9c82SHong Zhang 
496558cb9c82SHong Zhang     /* if free space is not available, make more free space */
496648a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
496758cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49689566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49699566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4970bcc1bcd5SHong Zhang 
497158cb9c82SHong Zhang     current_space->array += bnzi;
497258cb9c82SHong Zhang     current_space->local_used += bnzi;
497358cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
497458cb9c82SHong Zhang 
497558cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
497658cb9c82SHong Zhang   }
4977bcc1bcd5SHong Zhang 
49789566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4979bcc1bcd5SHong Zhang 
49809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
49819566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
49829566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
4983409913e3SHong Zhang 
4984bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
49859566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
49869566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
498754b84b50SHong Zhang   if (n == PETSC_DECIDE) {
49889566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
498954b84b50SHong Zhang   } else {
49909566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
499154b84b50SHong Zhang   }
49929566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
49939566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
49949566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
4995d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
49969566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
499758cb9c82SHong Zhang 
499890431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
49996abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5000affca5deSHong Zhang   merge->bi        = bi;
5001affca5deSHong Zhang   merge->bj        = bj;
500202c68681SHong Zhang   merge->buf_ri    = buf_ri;
500302c68681SHong Zhang   merge->buf_rj    = buf_rj;
50040298fd71SBarry Smith   merge->coi       = NULL;
50050298fd71SBarry Smith   merge->coj       = NULL;
50060298fd71SBarry Smith   merge->owners_co = NULL;
5007affca5deSHong Zhang 
50089566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5009bf0cc555SLisandro Dalcin 
5010affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50119566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50129566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
501349abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50149566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50159566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5016affca5deSHong Zhang   *mpimat = B_mpi;
501738f152feSBarry Smith 
50189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5020e5f2cdd8SHong Zhang }
502125616d81SHong Zhang 
5022cc4c1da9SBarry Smith /*@
502311a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5024d4036a1aSHong Zhang   matrices from each processor
5025d4036a1aSHong Zhang 
5026d083f849SBarry Smith   Collective
5027d4036a1aSHong Zhang 
5028d4036a1aSHong Zhang   Input Parameters:
5029d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5030d4036a1aSHong Zhang . seqmat - the input sequential matrices
503111a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
503211a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
503311a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5034d4036a1aSHong Zhang 
5035d4036a1aSHong Zhang   Output Parameter:
5036d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5037d4036a1aSHong Zhang 
5038d4036a1aSHong Zhang   Level: advanced
5039d4036a1aSHong Zhang 
504011a5261eSBarry Smith   Note:
5041d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5042d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5043b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50442ef1f0ffSBarry Smith 
50451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5046d4036a1aSHong Zhang @*/
5047d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5048d71ae5a4SJacob Faibussowitsch {
50497e63b356SHong Zhang   PetscMPIInt size;
505055d1abb9SHong Zhang 
505155d1abb9SHong Zhang   PetscFunctionBegin;
50529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50537e63b356SHong Zhang   if (size == 1) {
50549566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50557e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50569566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50577e63b356SHong Zhang     } else {
50589566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50597e63b356SHong Zhang     }
50609566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50627e63b356SHong Zhang   }
50639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
506448a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50659566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
506855d1abb9SHong Zhang }
50694ebed01fSBarry Smith 
5070bc08b0f1SBarry Smith /*@
50712920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50728a9c020eSBarry Smith 
50738a9c020eSBarry Smith   Not Collective
50748a9c020eSBarry Smith 
50752fe279fdSBarry Smith   Input Parameter:
507620f4b53cSBarry Smith . A - the matrix
50778a9c020eSBarry Smith 
50788a9c020eSBarry Smith   Output Parameter:
50798a9c020eSBarry Smith . A_loc - the local sequential matrix generated
50808a9c020eSBarry Smith 
50818a9c020eSBarry Smith   Level: developer
50828a9c020eSBarry Smith 
50838a9c020eSBarry Smith   Notes:
50842920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
50852920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
50862920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
50872920cce0SJacob Faibussowitsch 
508811a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
50898a9c020eSBarry Smith 
50902920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
50912920cce0SJacob Faibussowitsch 
509211a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
50938a9c020eSBarry Smith 
50941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
50958a9c020eSBarry Smith @*/
5096d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5097d71ae5a4SJacob Faibussowitsch {
50988a9c020eSBarry Smith   PetscBool mpi;
50998a9c020eSBarry Smith 
51008a9c020eSBarry Smith   PetscFunctionBegin;
51018a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51028a9c020eSBarry Smith   if (mpi) {
51038a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51048a9c020eSBarry Smith   } else {
51058a9c020eSBarry Smith     *A_loc = A;
51068a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51078a9c020eSBarry Smith   }
51083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51098a9c020eSBarry Smith }
51108a9c020eSBarry Smith 
51118a9c020eSBarry Smith /*@
51122920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
511325616d81SHong Zhang 
511432fba14fSHong Zhang   Not Collective
511525616d81SHong Zhang 
511625616d81SHong Zhang   Input Parameters:
511725616d81SHong Zhang + A     - the matrix
511811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
511925616d81SHong Zhang 
512025616d81SHong Zhang   Output Parameter:
512125616d81SHong Zhang . A_loc - the local sequential matrix generated
512225616d81SHong Zhang 
512325616d81SHong Zhang   Level: developer
512425616d81SHong Zhang 
512577c65a98SStefano Zampini   Notes:
51262920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51272920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51282920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51292920cce0SJacob Faibussowitsch 
513011a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51318a9c020eSBarry Smith 
51322920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51332920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51342920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51352920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
513677c65a98SStefano Zampini 
51371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
513825616d81SHong Zhang @*/
5139d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5140d71ae5a4SJacob Faibussowitsch {
514101b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5142b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5143b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5144ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5145ce496241SStefano Zampini   PetscScalar       *ca, *cam;
514677c65a98SStefano Zampini   PetscMPIInt        size;
5147d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51485a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51498661ff28SBarry Smith   PetscBool          match;
515025616d81SHong Zhang 
515125616d81SHong Zhang   PetscFunctionBegin;
51529566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
515328b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
515577c65a98SStefano Zampini   if (size == 1) {
515677c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51579566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
515877c65a98SStefano Zampini       *A_loc = mpimat->A;
515977c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51609566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
516177c65a98SStefano Zampini     }
51623ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
516377c65a98SStefano Zampini   }
516470a9ba44SHong Zhang 
51659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5166f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5167f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
51689371c9d4SSatish Balay   ai = a->i;
51699371c9d4SSatish Balay   aj = a->j;
51709371c9d4SSatish Balay   bi = b->i;
51719371c9d4SSatish Balay   bj = b->j;
51729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5174ce496241SStefano Zampini   aa = aav;
5175ce496241SStefano Zampini   ba = bav;
517601b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5178dea91ad1SHong Zhang     ci[0] = 0;
5179ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
51809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
51819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5182dea91ad1SHong Zhang     k = 0;
518301b7ae99SHong Zhang     for (i = 0; i < am; i++) {
51845a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
51855a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
518601b7ae99SHong Zhang       /* off-diagonal portion of A */
51875a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
51885a7d977cSHong Zhang         col = cmap[*bj];
51895a7d977cSHong Zhang         if (col >= cstart) break;
51909371c9d4SSatish Balay         cj[k] = col;
51919371c9d4SSatish Balay         bj++;
51925a7d977cSHong Zhang         ca[k++] = *ba++;
51935a7d977cSHong Zhang       }
51945a7d977cSHong Zhang       /* diagonal portion of A */
51955a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
51965a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
51975a7d977cSHong Zhang         ca[k++] = *aa++;
51985a7d977cSHong Zhang       }
51995a7d977cSHong Zhang       /* off-diagonal portion of A */
52005a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52015a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52025a7d977cSHong Zhang         ca[k++] = *ba++;
52035a7d977cSHong Zhang       }
520425616d81SHong Zhang     }
5205dea91ad1SHong Zhang     /* put together the new matrix */
52069566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5207dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5208dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5209dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5210e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5211e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5212dea91ad1SHong Zhang     mat->nonew   = 0;
52135a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52145a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5215fff043a9SJunchao Zhang     ci  = mat->i;
5216fff043a9SJunchao Zhang     cj  = mat->j;
52179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52185a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52195a7d977cSHong Zhang       /* off-diagonal portion of A */
52205a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52215a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52225a7d977cSHong Zhang         col = cmap[*bj];
52235a7d977cSHong Zhang         if (col >= cstart) break;
52249371c9d4SSatish Balay         *cam++ = *ba++;
52259371c9d4SSatish Balay         bj++;
52265a7d977cSHong Zhang       }
52275a7d977cSHong Zhang       /* diagonal portion of A */
5228ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5229a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52305a7d977cSHong Zhang       /* off-diagonal portion of A */
5231f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52329371c9d4SSatish Balay         *cam++ = *ba++;
52339371c9d4SSatish Balay         bj++;
5234f33d1a9aSHong Zhang       }
52355a7d977cSHong Zhang     }
52369566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
523798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
524225616d81SHong Zhang }
524325616d81SHong Zhang 
5244ed502f03SStefano Zampini /*@
524511a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52464cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5247ed502f03SStefano Zampini 
5248ed502f03SStefano Zampini   Not Collective
5249ed502f03SStefano Zampini 
5250ed502f03SStefano Zampini   Input Parameters:
5251ed502f03SStefano Zampini + A     - the matrix
525211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5253ed502f03SStefano Zampini 
5254d8d19677SJose E. Roman   Output Parameters:
52552ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5256ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5257ed502f03SStefano Zampini 
5258ed502f03SStefano Zampini   Level: developer
5259ed502f03SStefano Zampini 
526011a5261eSBarry Smith   Note:
52612ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52624cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5263ed502f03SStefano Zampini 
52641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5265ed502f03SStefano Zampini @*/
5266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5267d71ae5a4SJacob Faibussowitsch {
5268ed502f03SStefano Zampini   Mat             Ao, Ad;
5269ed502f03SStefano Zampini   const PetscInt *cmap;
5270ed502f03SStefano Zampini   PetscMPIInt     size;
5271ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5272ed502f03SStefano Zampini 
5273ed502f03SStefano Zampini   PetscFunctionBegin;
52749566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5276ed502f03SStefano Zampini   if (size == 1) {
5277ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52789566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5279ed502f03SStefano Zampini       *A_loc = Ad;
5280ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52819566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5282ed502f03SStefano Zampini     }
52839566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
52843ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5285ed502f03SStefano Zampini   }
52869566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
52879566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5288ed502f03SStefano Zampini   if (f) {
52899566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5290ed502f03SStefano Zampini   } else {
5291ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5292ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5293ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5294ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5295ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5296ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5297ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5298ed502f03SStefano Zampini     PetscScalar       *ca;
5299ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5300ed502f03SStefano Zampini 
53019566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53029566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5305ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5306ed502f03SStefano Zampini       PetscInt k;
53079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5310ed502f03SStefano Zampini       ci[0] = 0;
5311ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5312ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5313ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5314ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5315ed502f03SStefano Zampini         /* diagonal portion of A */
5316ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5317ed502f03SStefano Zampini           cj[k] = *aj++;
5318ed502f03SStefano Zampini           ca[k] = *aa++;
5319ed502f03SStefano Zampini         }
5320ed502f03SStefano Zampini         /* off-diagonal portion of A */
5321ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5322ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5323ed502f03SStefano Zampini           ca[k] = *ba++;
5324ed502f03SStefano Zampini         }
5325ed502f03SStefano Zampini       }
5326ed502f03SStefano Zampini       /* put together the new matrix */
53279566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5328ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5329ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5330ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5331ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5332ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5333ed502f03SStefano Zampini       c->nonew   = 0;
53349566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5335ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53369566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5337ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5338ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5339ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5340ed502f03SStefano Zampini         /* diagonal portion of A */
5341ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5342ed502f03SStefano Zampini         /* off-diagonal portion of A */
5343ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5344ed502f03SStefano Zampini       }
53459566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
534698921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53489566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5349ed502f03SStefano Zampini     if (glob) {
5350ed502f03SStefano Zampini       PetscInt cst, *gidx;
5351ed502f03SStefano Zampini 
53529566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53539566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5354ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5355ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53569566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5357ed502f03SStefano Zampini     }
5358ed502f03SStefano Zampini   }
53599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5361ed502f03SStefano Zampini }
5362ed502f03SStefano Zampini 
536332fba14fSHong Zhang /*@C
536411a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
536532fba14fSHong Zhang 
536632fba14fSHong Zhang   Not Collective
536732fba14fSHong Zhang 
536832fba14fSHong Zhang   Input Parameters:
536932fba14fSHong Zhang + A     - the matrix
537011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
537120f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
537220f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
537332fba14fSHong Zhang 
537432fba14fSHong Zhang   Output Parameter:
537532fba14fSHong Zhang . A_loc - the local sequential matrix generated
537632fba14fSHong Zhang 
537732fba14fSHong Zhang   Level: developer
537832fba14fSHong Zhang 
53791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
538032fba14fSHong Zhang @*/
5381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5382d71ae5a4SJacob Faibussowitsch {
538332fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
538432fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
538532fba14fSHong Zhang   IS          isrowa, iscola;
538632fba14fSHong Zhang   Mat        *aloc;
53874a2b5492SBarry Smith   PetscBool   match;
538832fba14fSHong Zhang 
538932fba14fSHong Zhang   PetscFunctionBegin;
53909566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
539128b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
53929566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
539332fba14fSHong Zhang   if (!row) {
53949371c9d4SSatish Balay     start = A->rmap->rstart;
53959371c9d4SSatish Balay     end   = A->rmap->rend;
53969566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
539732fba14fSHong Zhang   } else {
539832fba14fSHong Zhang     isrowa = *row;
539932fba14fSHong Zhang   }
540032fba14fSHong Zhang   if (!col) {
5401d0f46423SBarry Smith     start = A->cmap->rstart;
540232fba14fSHong Zhang     cmap  = a->garray;
5403d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5404d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
540632fba14fSHong Zhang     ncols = 0;
540732fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
540832fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
540932fba14fSHong Zhang       else break;
541032fba14fSHong Zhang     }
541132fba14fSHong Zhang     imark = i;
541232fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
541332fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54149566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
541532fba14fSHong Zhang   } else {
541632fba14fSHong Zhang     iscola = *col;
541732fba14fSHong Zhang   }
541832fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
542032fba14fSHong Zhang     aloc[0] = *A_loc;
542132fba14fSHong Zhang   }
54229566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5423109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54249566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5425109e0772SStefano Zampini   }
542632fba14fSHong Zhang   *A_loc = aloc[0];
54279566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
542848a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
542948a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
543232fba14fSHong Zhang }
543332fba14fSHong Zhang 
54345c65b9ecSFande Kong /*
54355c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54365c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54375c65b9ecSFande Kong  * on a global size.
54385c65b9ecSFande Kong  * */
5439ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5440d71ae5a4SJacob Faibussowitsch {
54415c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5442f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5443131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5444131c27b5Sprj-   PetscMPIInt            owner;
54455c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54465c65b9ecSFande Kong   const PetscInt        *lrowindices;
54475c65b9ecSFande Kong   PetscSF                sf, osf;
54485c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54495c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54505c65b9ecSFande Kong   MPI_Comm               comm;
54515c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5452fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54535c65b9ecSFande Kong 
54545c65b9ecSFande Kong   PetscFunctionBegin;
54559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54565c65b9ecSFande Kong   /* plocalsize is the number of roots
54575c65b9ecSFande Kong    * nrows is the number of leaves
54585c65b9ecSFande Kong    * */
54599566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54609566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54619566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54629566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54635c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54645c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54655c65b9ecSFande Kong      * The row could be local or remote
54665c65b9ecSFande Kong      * */
546734bcad68SFande Kong     owner = 0;
546834bcad68SFande Kong     lidx  = 0;
54699566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54705c65b9ecSFande Kong     iremote[i].index = lidx;
54715c65b9ecSFande Kong     iremote[i].rank  = owner;
54725c65b9ecSFande Kong   }
54735c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54749566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5475f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54765c65b9ecSFande Kong    * offsets
54775c65b9ecSFande Kong    * */
54789566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54799566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
54809566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5481bc8e477aSFande Kong 
54829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
54839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
54849566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
54855c65b9ecSFande Kong   roffsets[0] = 0;
54865c65b9ecSFande Kong   roffsets[1] = 0;
54875c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
54884cf0e950SBarry Smith     /* diagonal */
54895c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
54904cf0e950SBarry Smith     /* off-diagonal */
54915c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
54925c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
54935c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
54945c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
54955c65b9ecSFande Kong   }
54969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
54979566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
54985c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
54999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55009566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55019566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55029566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55039566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55049566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55059566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55065c65b9ecSFande Kong   dntotalcols = 0;
55075c65b9ecSFande Kong   ontotalcols = 0;
5508bc8e477aSFande Kong   ncol        = 0;
55095c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55105c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5511bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55124cf0e950SBarry Smith     /* diagonal */
55135c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55144cf0e950SBarry Smith     /* off-diagonal */
55155c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55165c65b9ecSFande Kong   }
55175c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55185c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55195c65b9ecSFande Kong    * */
55209566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55219566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55229566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55235c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55244cf0e950SBarry Smith   /* diagonal */
55259566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55264cf0e950SBarry Smith   /* off-diagonal */
55279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55284cf0e950SBarry Smith   /* diagonal */
55299566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55304cf0e950SBarry Smith   /* off-diagonal */
55319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55325c65b9ecSFande Kong   dntotalcols = 0;
55335c65b9ecSFande Kong   ontotalcols = 0;
55345c65b9ecSFande Kong   ntotalcols  = 0;
55355c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
553634bcad68SFande Kong     owner = 0;
55379566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55385c65b9ecSFande Kong     /* Set iremote for diag matrix */
55395c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55405c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55415c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55425c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55435c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55445c65b9ecSFande Kong     }
55454cf0e950SBarry Smith     /* off-diagonal */
55465c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55475c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55485c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55495c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55505c65b9ecSFande Kong     }
55515c65b9ecSFande Kong   }
55529566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55539566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55549566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55559566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55565c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55575c65b9ecSFande Kong    * Diag matrix
55585c65b9ecSFande Kong    * */
55599566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55609566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55619566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55625c65b9ecSFande Kong 
55639566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55644cf0e950SBarry Smith   /* off-diagonal */
55659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55679566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55704cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55719566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55729566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55745c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55755c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55769566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55775c65b9ecSFande Kong   /* We want P_oth store global indices */
55789566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55795c65b9ecSFande Kong   /* Use memory scalable approach */
55809566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
55819566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
55829566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55839566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55845c65b9ecSFande Kong   /* Convert back to local indices */
55855c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
55869566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55875c65b9ecSFande Kong   nout = 0;
55889566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
558908401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
55909566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
55915c65b9ecSFande Kong   /* Exchange values */
55929566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55939566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
55959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
55965c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
55975c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
55989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
55999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56005c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56019566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56029566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56039566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56049566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56065c65b9ecSFande Kong }
56075c65b9ecSFande Kong 
56085c65b9ecSFande Kong /*
56095c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56105c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56115c65b9ecSFande Kong  * */
5612d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5613d71ae5a4SJacob Faibussowitsch {
56145c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5615bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5616bc8e477aSFande Kong   IS          rows, map;
5617bc8e477aSFande Kong   PetscHMapI  hamp;
5618bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56195c65b9ecSFande Kong   MPI_Comm    comm;
56205c65b9ecSFande Kong   PetscSF     sf, osf;
5621bc8e477aSFande Kong   PetscBool   has;
56225c65b9ecSFande Kong 
56235c65b9ecSFande Kong   PetscFunctionBegin;
56249566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56265c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56275c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56285c65b9ecSFande Kong    * */
56295c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56305c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5631eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56329566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5633bc8e477aSFande Kong     count = 0;
5634bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5635bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5636bc8e477aSFande Kong       key = a->garray[i] / dof;
56379566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5638bc8e477aSFande Kong       if (!has) {
5639bc8e477aSFande Kong         mapping[i] = count;
56409566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5641bc8e477aSFande Kong       } else {
5642bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5643bc8e477aSFande Kong         mapping[i] = count - 1;
56445c65b9ecSFande Kong       }
5645bc8e477aSFande Kong     }
56469566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56479566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5648eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56499566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56505c65b9ecSFande Kong     off = 0;
56519566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56529566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56539566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56549566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56555c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56569566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56579566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56589566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56599566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56615c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56625c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
566335cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5664fff043a9SJunchao Zhang      */
5665fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5666fff043a9SJunchao Zhang 
56679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56689566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
566908401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56705c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56715c65b9ecSFande Kong     /* Update values in place */
56729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56749566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56759566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56769566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56779566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56799566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56806718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
56819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
56823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56835c65b9ecSFande Kong }
56845c65b9ecSFande Kong 
568525616d81SHong Zhang /*@C
568620f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
568725616d81SHong Zhang 
5688c3339decSBarry Smith   Collective
568925616d81SHong Zhang 
569025616d81SHong Zhang   Input Parameters:
569111a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
569211a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
569311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
569425616d81SHong Zhang 
5695f1a722f8SMatthew G. Knepley   Output Parameters:
569627430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
569727430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5698f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
569925616d81SHong Zhang 
570025616d81SHong Zhang   Level: developer
570125616d81SHong Zhang 
570220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
570325616d81SHong Zhang @*/
5704d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5705d71ae5a4SJacob Faibussowitsch {
5706899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5707b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
570825616d81SHong Zhang   IS          isrowb, iscolb;
57090298fd71SBarry Smith   Mat        *bseq = NULL;
571025616d81SHong Zhang 
571125616d81SHong Zhang   PetscFunctionBegin;
571220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
571320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57149566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
571525616d81SHong Zhang 
571625616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5717d0f46423SBarry Smith     start = A->cmap->rstart;
571825616d81SHong Zhang     cmap  = a->garray;
5719d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5720d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
572225616d81SHong Zhang     ncols = 0;
57230390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
572425616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
572525616d81SHong Zhang       else break;
572625616d81SHong Zhang     }
572725616d81SHong Zhang     imark = i;
57280390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57290390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57309566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57319566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
573225616d81SHong Zhang   } else {
573308401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57349371c9d4SSatish Balay     isrowb = *rowb;
57359371c9d4SSatish Balay     iscolb = *colb;
57369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
573725616d81SHong Zhang     bseq[0] = *B_seq;
573825616d81SHong Zhang   }
57399566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
574025616d81SHong Zhang   *B_seq = bseq[0];
57419566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
574225616d81SHong Zhang   if (!rowb) {
57439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
574425616d81SHong Zhang   } else {
574525616d81SHong Zhang     *rowb = isrowb;
574625616d81SHong Zhang   }
574725616d81SHong Zhang   if (!colb) {
57489566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
574925616d81SHong Zhang   } else {
575025616d81SHong Zhang     *colb = iscolb;
575125616d81SHong Zhang   }
57529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
575425616d81SHong Zhang }
5755429d309bSHong Zhang 
5756f8487c73SHong Zhang /*
575727430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
575801b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5759429d309bSHong Zhang 
5760c3339decSBarry Smith     Collective
5761429d309bSHong Zhang 
5762429d309bSHong Zhang    Input Parameters:
576327430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
576427430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5765429d309bSHong Zhang 
5766429d309bSHong Zhang    Output Parameter:
57670298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57680298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57690298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5770598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5771429d309bSHong Zhang 
577211a5261eSBarry Smith     Developer Note:
577311a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57746eb45d04SBarry Smith      for this matrix. This is not desirable..
57756eb45d04SBarry Smith 
5776429d309bSHong Zhang     Level: developer
5777429d309bSHong Zhang 
5778f8487c73SHong Zhang */
57796497c311SBarry Smith 
5780d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5781d71ae5a4SJacob Faibussowitsch {
5782899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
57834b8d542aSHong Zhang   VecScatter         ctx;
5784ce94432eSBarry Smith   MPI_Comm           comm;
57853515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
57866497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
57873515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5788277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
57896497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5790277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5791ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5792ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5793429d309bSHong Zhang 
5794429d309bSHong Zhang   PetscFunctionBegin;
57959566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
57969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5797a7c7454dSHong Zhang 
579820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
579920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5802a6b2eed2SHong Zhang 
5803ec07b8f8SHong Zhang   if (size == 1) {
5804ec07b8f8SHong Zhang     startsj_s = NULL;
5805ec07b8f8SHong Zhang     bufa_ptr  = NULL;
580652f7967eSHong Zhang     *B_oth    = NULL;
58073ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5808ec07b8f8SHong Zhang   }
5809ec07b8f8SHong Zhang 
5810fa83eaafSHong Zhang   ctx = a->Mvctx;
58114b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58124b8d542aSHong Zhang 
58139566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58143515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58159566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58169566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5818ddea5d60SJunchao Zhang   rwaits = reqs;
58198e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5820429d309bSHong Zhang 
5821b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5822429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5823a6b2eed2SHong Zhang     /* i-array */
5824a6b2eed2SHong Zhang     /*  post receives */
58259566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5826a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
582774268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5828e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58296497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5830429d309bSHong Zhang     }
5831a6b2eed2SHong Zhang 
5832a6b2eed2SHong Zhang     /* pack the outgoing message */
58339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58342205254eSKarl Rupp 
58352205254eSKarl Rupp     sstartsj[0] = 0;
58362205254eSKarl Rupp     rstartsj[0] = 0;
5837a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58383515ee7fSJunchao Zhang     if (nsends) {
58393515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58409566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58413515ee7fSJunchao Zhang     }
5842a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58433515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5844e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
584587025532SHong Zhang       for (j = 0; j < nrows; j++) {
5846d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5847e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58489566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58492205254eSKarl Rupp 
5850e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58512205254eSKarl Rupp 
5852e42f35eeSHong Zhang           len += ncols;
58539566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5854e42f35eeSHong Zhang         }
5855a6b2eed2SHong Zhang         k++;
5856429d309bSHong Zhang       }
58576497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58582205254eSKarl Rupp 
5859dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5860429d309bSHong Zhang     }
586187025532SHong Zhang     /* recvs and sends of i-array are completed */
58629566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58639566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5864e42f35eeSHong Zhang 
5865a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
58669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
58679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5868a6b2eed2SHong Zhang 
586987025532SHong Zhang     /* create i-array of B_oth */
58709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
58712205254eSKarl Rupp 
587287025532SHong Zhang     b_othi[0] = 0;
5873a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5874a6b2eed2SHong Zhang     k         = 0;
5875a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58763515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58773515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
587887025532SHong Zhang       for (j = 0; j < nrows; j++) {
587987025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58809566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5881f91af8c7SBarry Smith         k++;
5882a6b2eed2SHong Zhang       }
5883dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5884a6b2eed2SHong Zhang     }
58859566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5886a6b2eed2SHong Zhang 
58876aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
58889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
58899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5890a6b2eed2SHong Zhang 
589187025532SHong Zhang     /* j-array */
5892a6b2eed2SHong Zhang     /*  post receives of j-array */
5893a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
589487025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
58956497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5896a6b2eed2SHong Zhang     }
5897e42f35eeSHong Zhang 
5898e42f35eeSHong Zhang     /* pack the outgoing message j-array */
58993515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5900a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5901e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5902a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
590387025532SHong Zhang       for (j = 0; j < nrows; j++) {
5904d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5905e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59069566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5907ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59089566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5909e42f35eeSHong Zhang         }
591087025532SHong Zhang       }
59116497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
591287025532SHong Zhang     }
591387025532SHong Zhang 
591487025532SHong Zhang     /* recvs and sends of j-array are completed */
59159566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
591687025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5917b7f45c76SHong Zhang     sstartsj = *startsj_s;
59181d79065fSBarry Smith     rstartsj = *startsj_r;
591987025532SHong Zhang     bufa     = *bufa_ptr;
59209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5921ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
592287025532SHong Zhang 
592387025532SHong Zhang   /* a-array */
592487025532SHong Zhang   /*  post receives of a-array */
592587025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
592687025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59276497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
592887025532SHong Zhang   }
5929e42f35eeSHong Zhang 
5930e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59313515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
593287025532SHong Zhang   for (i = 0; i < nsends; i++) {
5933e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
593487025532SHong Zhang     bufA  = bufa + sstartsj[i];
593587025532SHong Zhang     for (j = 0; j < nrows; j++) {
5936d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5937e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59389566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5939ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59409566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5941e42f35eeSHong Zhang       }
5942a6b2eed2SHong Zhang     }
59436497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5944a6b2eed2SHong Zhang   }
594587025532SHong Zhang   /* recvs and sends of a-array are completed */
59469566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59479566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5948a6b2eed2SHong Zhang 
594987025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5950dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
5951dd460d27SBarry Smith 
5952a6b2eed2SHong Zhang     /* put together the new matrix */
59539566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5954a6b2eed2SHong Zhang 
5955a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5956a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
595787025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5958e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5959e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
596087025532SHong Zhang     b_oth->nonew   = 0;
5961a6b2eed2SHong Zhang 
59629566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5963b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59649566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59659566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5966dea91ad1SHong Zhang     } else {
5967b7f45c76SHong Zhang       *startsj_s = sstartsj;
59681d79065fSBarry Smith       *startsj_r = rstartsj;
596987025532SHong Zhang       *bufa_ptr  = bufa;
597087025532SHong Zhang     }
5971fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5973dea91ad1SHong Zhang   }
59743515ee7fSJunchao Zhang 
59759566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59769566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5979429d309bSHong Zhang }
5980ccd8e176SBarry Smith 
5981cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
5982cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
5983ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
59849779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
5985a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
5986191b95cbSRichard Tran Mills #endif
5987ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
5988cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
59895d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5990cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
59915d7652ecSHong Zhang #endif
5992d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
5993d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
5994d24d4204SJose E. Roman #endif
599563c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
599663c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
599763c07aadSStefano Zampini #endif
59983338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
59993338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60003338378cSStefano Zampini #endif
6001d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6002d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6003d5e393b6SSuyash Tandon #endif
60043d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60053d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60063d0639e7SStefano Zampini #endif
6007d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60084222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60094222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
601017667f90SBarry Smith 
6011fc4dec0aSBarry Smith /*
6012fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6013fc4dec0aSBarry Smith 
6014fc4dec0aSBarry Smith                n                       p                          p
60152da392ccSBarry Smith         [             ]       [             ]         [                 ]
60162da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60172da392ccSBarry Smith         [             ]       [             ]         [                 ]
6018fc4dec0aSBarry Smith 
6019fc4dec0aSBarry Smith */
6020d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6021d71ae5a4SJacob Faibussowitsch {
6022fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6023fc4dec0aSBarry Smith 
6024fc4dec0aSBarry Smith   PetscFunctionBegin;
60259566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60269566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6027fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60289566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60299566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60307fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60319566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60329566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6034fc4dec0aSBarry Smith }
6035fc4dec0aSBarry Smith 
6036d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6037d71ae5a4SJacob Faibussowitsch {
60386718818eSStefano Zampini   PetscBool cisdense;
6039fc4dec0aSBarry Smith 
6040fc4dec0aSBarry Smith   PetscFunctionBegin;
604108401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60439566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6044d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
604548a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60469566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6047f75ecaa4SHong Zhang 
60484222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6050fc4dec0aSBarry Smith }
6051fc4dec0aSBarry Smith 
6052d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6053d71ae5a4SJacob Faibussowitsch {
60544222ddf1SHong Zhang   Mat_Product *product = C->product;
60554222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6056fc4dec0aSBarry Smith 
6057fc4dec0aSBarry Smith   PetscFunctionBegin;
605820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
605920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60604222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60614222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6063fc4dec0aSBarry Smith }
6064fc4dec0aSBarry Smith 
6065d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6066d71ae5a4SJacob Faibussowitsch {
60674222ddf1SHong Zhang   Mat_Product *product = C->product;
60684222ddf1SHong Zhang 
60694222ddf1SHong Zhang   PetscFunctionBegin;
607048a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60724222ddf1SHong Zhang }
6073394ed5ebSJunchao Zhang 
607427430b45SBarry Smith /*
607527430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6076394ed5ebSJunchao Zhang 
6077394ed5ebSJunchao Zhang   Input Parameters:
6078394ed5ebSJunchao Zhang 
6079651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6080651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6081394ed5ebSJunchao Zhang 
6082158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6083394ed5ebSJunchao Zhang 
6084394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6085394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6086394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6087394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6088394ed5ebSJunchao Zhang 
6089394ed5ebSJunchao Zhang     Similar for Set2.
6090394ed5ebSJunchao Zhang 
6091394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6092394ed5ebSJunchao Zhang 
6093158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6094394ed5ebSJunchao Zhang 
6095394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6096394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6097394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6098394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6099394ed5ebSJunchao Zhang */
6100d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6101d71ae5a4SJacob Faibussowitsch {
6102394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6103394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6104394ed5ebSJunchao Zhang 
6105394ed5ebSJunchao Zhang   PetscFunctionBegin;
61069566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6107394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6108394ed5ebSJunchao Zhang   i[0]        = 0;
6109394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6110394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6111394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6112394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6113394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6114394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6115394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6116394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6117394ed5ebSJunchao Zhang         imap1[t1] = t;
6118394ed5ebSJunchao Zhang         imap2[t2] = t;
6119394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6120394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61219371c9d4SSatish Balay         t1++;
61229371c9d4SSatish Balay         t2++;
61239371c9d4SSatish Balay         t++;
6124394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6125394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6126394ed5ebSJunchao Zhang         imap1[t1] = t;
6127394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61289371c9d4SSatish Balay         t1++;
61299371c9d4SSatish Balay         t++;
6130394ed5ebSJunchao Zhang       } else {
6131394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6132394ed5ebSJunchao Zhang         imap2[t2] = t;
6133394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61349371c9d4SSatish Balay         t2++;
61359371c9d4SSatish Balay         t++;
6136394ed5ebSJunchao Zhang       }
6137394ed5ebSJunchao Zhang     }
6138394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6139394ed5ebSJunchao Zhang     while (b1 < e1) {
6140394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6141394ed5ebSJunchao Zhang       imap1[t1] = t;
6142394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61439371c9d4SSatish Balay       t1++;
61449371c9d4SSatish Balay       t++;
6145394ed5ebSJunchao Zhang     }
6146394ed5ebSJunchao Zhang     while (b2 < e2) {
6147394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6148394ed5ebSJunchao Zhang       imap2[t2] = t;
6149394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61509371c9d4SSatish Balay       t2++;
61519371c9d4SSatish Balay       t++;
6152394ed5ebSJunchao Zhang     }
61536497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6154394ed5ebSJunchao Zhang   }
61553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6156394ed5ebSJunchao Zhang }
6157394ed5ebSJunchao Zhang 
615827430b45SBarry Smith /*
615927430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6160394ed5ebSJunchao Zhang 
6161394ed5ebSJunchao Zhang   Input Parameters:
6162394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6163394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6164394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6165394ed5ebSJunchao Zhang 
6166394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6167394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6168394ed5ebSJunchao Zhang 
6169394ed5ebSJunchao Zhang   Output Parameters:
6170394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6171394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6172394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6173394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6174394ed5ebSJunchao Zhang 
6175394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6176158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6177158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6178394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6179394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6180394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6181394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6182394ed5ebSJunchao Zhang 
6183394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6184394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6185394ed5ebSJunchao Zhang 
6186394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6187394ed5ebSJunchao Zhang 
6188158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6189394ed5ebSJunchao Zhang */
6190d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6191d71ae5a4SJacob Faibussowitsch {
6192394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6193394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6194394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6195394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6196394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6197394ed5ebSJunchao Zhang 
6198394ed5ebSJunchao Zhang   PetscFunctionBegin;
61999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6201394ed5ebSJunchao Zhang   m = rend - rstart;
6202394ed5ebSJunchao Zhang 
6203651b1cf9SStefano Zampini   /* Skip negative rows */
6204651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62059371c9d4SSatish Balay     if (i[k] >= 0) break;
6206394ed5ebSJunchao Zhang 
6207394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6208394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6209394ed5ebSJunchao Zhang   */
6210394ed5ebSJunchao Zhang   while (k < n) {
6211394ed5ebSJunchao Zhang     row = i[k];
6212394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62139371c9d4SSatish Balay     for (s = k; s < n; s++)
62149371c9d4SSatish Balay       if (i[s] != row) break;
6215651b1cf9SStefano Zampini 
62161690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6217394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62181690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
6219394ed5ebSJunchao Zhang     }
62209566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6221158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6222394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6223394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6224394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
62258551dd9cSJunchao Zhang     PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N);
6226394ed5ebSJunchao Zhang 
6227394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6228394ed5ebSJunchao Zhang     Atot += mid - k;
6229394ed5ebSJunchao Zhang     Btot += s - mid;
6230394ed5ebSJunchao Zhang 
6231651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6232394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6233394ed5ebSJunchao Zhang       col = j[p];
62349371c9d4SSatish Balay       do {
62351690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62369371c9d4SSatish Balay         p++;
6237651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6238394ed5ebSJunchao Zhang       Annz++;
6239394ed5ebSJunchao Zhang     }
6240394ed5ebSJunchao Zhang 
6241651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6242394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6243394ed5ebSJunchao Zhang       col = j[p];
6244d71ae5a4SJacob Faibussowitsch       do {
6245d71ae5a4SJacob Faibussowitsch         p++;
6246d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6247394ed5ebSJunchao Zhang       Bnnz++;
6248394ed5ebSJunchao Zhang     }
6249394ed5ebSJunchao Zhang     k = s;
6250394ed5ebSJunchao Zhang   }
6251394ed5ebSJunchao Zhang 
6252394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6253158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6254158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6255158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6256158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6257394ed5ebSJunchao Zhang 
62586aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6259394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6260394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6261394ed5ebSJunchao Zhang     k   = rowBegin[r];
6262394ed5ebSJunchao Zhang     mid = rowMid[r];
6263394ed5ebSJunchao Zhang     s   = rowEnd[r];
62648e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
62658e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6266394ed5ebSJunchao Zhang     Atot += mid - k;
6267394ed5ebSJunchao Zhang     Btot += s - mid;
6268394ed5ebSJunchao Zhang 
6269394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6270394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6271394ed5ebSJunchao Zhang       col = j[p];
6272394ed5ebSJunchao Zhang       q   = p;
6273d71ae5a4SJacob Faibussowitsch       do {
6274d71ae5a4SJacob Faibussowitsch         p++;
6275d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6276394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6277394ed5ebSJunchao Zhang       Annz++;
6278394ed5ebSJunchao Zhang     }
6279394ed5ebSJunchao Zhang 
6280394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6281394ed5ebSJunchao Zhang       col = j[p];
6282394ed5ebSJunchao Zhang       q   = p;
6283d71ae5a4SJacob Faibussowitsch       do {
6284d71ae5a4SJacob Faibussowitsch         p++;
6285d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6286394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6287394ed5ebSJunchao Zhang       Bnnz++;
6288394ed5ebSJunchao Zhang     }
6289394ed5ebSJunchao Zhang   }
6290394ed5ebSJunchao Zhang   /* Output */
6291394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6292394ed5ebSJunchao Zhang   *Annz_  = Annz;
6293394ed5ebSJunchao Zhang   *Atot_  = Atot;
6294394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6295394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6296394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6297394ed5ebSJunchao Zhang   *Btot_  = Btot;
6298394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
62993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6300394ed5ebSJunchao Zhang }
6301394ed5ebSJunchao Zhang 
630227430b45SBarry Smith /*
630327430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6304158ec288SJunchao Zhang 
6305158ec288SJunchao Zhang   Input Parameters:
6306158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6307158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6308158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6309651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6310158ec288SJunchao Zhang 
6311158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6312158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6313158ec288SJunchao Zhang 
6314158ec288SJunchao Zhang   Example:
6315158ec288SJunchao Zhang     nnz1 = 4
6316158ec288SJunchao Zhang     nnz  = 6
6317158ec288SJunchao Zhang     imap = [1,3,4,5]
6318158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6319158ec288SJunchao Zhang    then,
6320158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6321158ec288SJunchao Zhang */
6322d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6323d71ae5a4SJacob Faibussowitsch {
6324158ec288SJunchao Zhang   PetscCount k, p;
6325158ec288SJunchao Zhang 
6326158ec288SJunchao Zhang   PetscFunctionBegin;
6327158ec288SJunchao Zhang   jmap_new[0] = 0;
6328158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6329158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6330158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6331158ec288SJunchao Zhang   }
6332158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6334158ec288SJunchao Zhang }
6335158ec288SJunchao Zhang 
633649abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63372c4ab24aSJunchao Zhang {
633849abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63392c4ab24aSJunchao Zhang 
63402c4ab24aSJunchao Zhang   PetscFunctionBegin;
63412c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63422c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63432c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63442c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63452c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63462c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63472c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63482c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63492c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63502c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63512c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63522c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63532c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63542c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63552c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63562c4ab24aSJunchao Zhang }
63572c4ab24aSJunchao Zhang 
6358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6359d71ae5a4SJacob Faibussowitsch {
6360394ed5ebSJunchao Zhang   MPI_Comm             comm;
6361394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6362394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6363394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6364394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63652c4ab24aSJunchao Zhang   PetscContainer       container;
63662c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6367394ed5ebSJunchao Zhang 
6368394ed5ebSJunchao Zhang   PetscFunctionBegin;
63699566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6371cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6372eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6373cbc6b225SStefano Zampini #else
63749566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6375cbc6b225SStefano Zampini #endif
63769566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6377cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6378cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6379cbc6b225SStefano Zampini 
63809566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
63829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
63839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
63849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
63859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
63869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
63879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
63889566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6389394ed5ebSJunchao Zhang 
63906aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6391394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6392394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6393e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6394e8729f6fSJunchao Zhang 
6395e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6396394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6397394ed5ebSJunchao Zhang 
6398394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6399394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6400394ed5ebSJunchao Zhang      will have positive row indices.
6401394ed5ebSJunchao Zhang   */
6402394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64031690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64041690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6405f7d195e4SLawrence Mitchell     else {
6406f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64071690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6408f7d195e4SLawrence Mitchell     }
6409394ed5ebSJunchao Zhang   }
6410394ed5ebSJunchao Zhang 
6411da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64129566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6413651b1cf9SStefano Zampini 
6414651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6415651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64161690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64176497c311SBarry Smith   PetscCount i1start = k;
6418651b1cf9SStefano Zampini 
64191690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64201690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6421394ed5ebSJunchao Zhang 
64228551dd9cSJunchao Zhang   PetscCheck(i1 == NULL || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M);
64238551dd9cSJunchao Zhang 
6424394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6425394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6426394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6427394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6428394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6429394ed5ebSJunchao Zhang   const PetscInt *ranges;
6430394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6431394ed5ebSJunchao Zhang 
64329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6434394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6435394ed5ebSJunchao Zhang     PetscMPIInt owner;
6436394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6437cbc6b225SStefano Zampini 
6438394ed5ebSJunchao Zhang     /* Locate a row range */
6439394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64409566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6441394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6442394ed5ebSJunchao Zhang 
64438551dd9cSJunchao Zhang     /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */
64449566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6445394ed5ebSJunchao Zhang 
6446394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6447394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6448394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6449394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6450394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6451cbc6b225SStefano Zampini 
64529566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64539566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64549566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64559566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6456394ed5ebSJunchao Zhang       sendto   = sendto2;
6457394ed5ebSJunchao Zhang       nentries = nentries2;
6458394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6459394ed5ebSJunchao Zhang     }
6460394ed5ebSJunchao Zhang     sendto[nsend] = owner;
64616497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6462394ed5ebSJunchao Zhang     nsend++;
6463394ed5ebSJunchao Zhang     k = p;
6464394ed5ebSJunchao Zhang   }
6465394ed5ebSJunchao Zhang 
6466394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6467394ed5ebSJunchao Zhang   PetscSF      sf1;
6468394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6469394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6470394ed5ebSJunchao Zhang   PetscInt    *offsets;
6471394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6472394ed5ebSJunchao Zhang 
64739566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6476394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6477394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6478394ed5ebSJunchao Zhang     iremote[k].index = 0;
6479394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
648054c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6481394ed5ebSJunchao Zhang   }
64829566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
64839566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
64849566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
64859566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6486e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6487394ed5ebSJunchao Zhang 
6488394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6489394ed5ebSJunchao Zhang   PetscSF sf2;
6490394ed5ebSJunchao Zhang   nroots  = nroots2;
6491394ed5ebSJunchao Zhang   nleaves = nleaves2;
64929566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
64939566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
64949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6495394ed5ebSJunchao Zhang   p = 0;
6496394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
649754c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6498394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6499394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65006497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6501394ed5ebSJunchao Zhang     }
6502394ed5ebSJunchao Zhang   }
65039566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6504394ed5ebSJunchao Zhang 
6505394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6506394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6507394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6509834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6510834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6511de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6512de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6513834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6514834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6515834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6516834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6517394ed5ebSJunchao Zhang 
65189566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65199566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6520394ed5ebSJunchao Zhang 
6521394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6522394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65239566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6524394ed5ebSJunchao Zhang 
6525651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6526651b1cf9SStefano Zampini   PetscCount *Cperm1;
6527834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6528de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6529651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6530834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6531651b1cf9SStefano Zampini 
6532651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6533651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6534651b1cf9SStefano Zampini   PetscBool hypre;
653517b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6536651b1cf9SStefano Zampini   if (hypre) {
6537651b1cf9SStefano Zampini     PetscInt *minj;
6538651b1cf9SStefano Zampini     PetscBT   hasdiag;
6539651b1cf9SStefano Zampini 
6540651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6541651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65421690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6543651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6544651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6545651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6546651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6547651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6548651b1cf9SStefano Zampini     }
6549651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6550651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6551651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6552651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6553651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6554651b1cf9SStefano Zampini     }
6555651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6556651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6557651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6558651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6559651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6560651b1cf9SStefano Zampini     }
6561651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6562651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6563651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6564651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6565651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6566651b1cf9SStefano Zampini     }
6567651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6568651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6569651b1cf9SStefano Zampini   }
6570651b1cf9SStefano Zampini 
6571651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6572651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6573651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6574651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6575394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6576394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6577394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6578394ed5ebSJunchao Zhang 
6579651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6581651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65829566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6583394ed5ebSJunchao Zhang 
6584394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6585394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6586394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6587394ed5ebSJunchao Zhang 
65889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
65899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
65909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
65919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6592394ed5ebSJunchao Zhang 
6593394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6594158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6595158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6596158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6597158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6598394ed5ebSJunchao Zhang 
65999566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66009566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6601158ec288SJunchao Zhang 
6602158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6603158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6604158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6605158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6606158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6607158ec288SJunchao Zhang 
6608158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6609158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6610158ec288SJunchao Zhang 
6611158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6612158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6613158ec288SJunchao Zhang 
6614158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6615158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6616158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6617158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66189566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66199566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6620e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66219566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6622394ed5ebSJunchao Zhang 
6623158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6624158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6625158ec288SJunchao Zhang 
6626394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6627394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6628394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66309566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66319566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6632394ed5ebSJunchao Zhang     Aj = Aj_new;
6633394ed5ebSJunchao Zhang   }
6634394ed5ebSJunchao Zhang 
6635394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6636394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66389566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66399566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6640394ed5ebSJunchao Zhang     Bj = Bj_new;
6641394ed5ebSJunchao Zhang   }
6642394ed5ebSJunchao Zhang 
6643cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6644394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6645cbc6b225SStefano Zampini   MatType          rtype;
6646394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6647cf8ba265SJunchao Zhang   PetscObjectState state;
66489566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66499566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6650394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66519371c9d4SSatish Balay   if (cstart) {
66529371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66539371c9d4SSatish Balay   }
6654c508b908SBarry Smith 
66559566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6656c508b908SBarry Smith 
6657c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6658c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
66599566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66600da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6661c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6662c508b908SBarry Smith 
6663c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6664c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
66659566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66660da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6667c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6668c508b908SBarry Smith 
66699566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66705bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6671cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6672462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6673cbc6b225SStefano Zampini 
6674394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6675394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
66769f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
66779f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
66789f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
66799f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
668017b874c6SStefano Zampini   a->maxnz   = a->nz;
668117b874c6SStefano Zampini   b->maxnz   = b->nz;
6682394ed5ebSJunchao Zhang 
6683cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66849566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66859566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
66869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
66879566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6688cbc6b225SStefano Zampini 
66892c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
66902c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
66912c4ab24aSJunchao Zhang   coo->n       = coo_n;
66922c4ab24aSJunchao Zhang   coo->sf      = sf2;
66932c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
66942c4ab24aSJunchao Zhang   coo->recvlen = nroots;
66952c4ab24aSJunchao Zhang   coo->Annz    = Annz;
66962c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
66972c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
66982c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
66992c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67002c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67012c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67022c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67032c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67042c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67052c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67062c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67072c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67082c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67092c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67102c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67112c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67122c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67132c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67142c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67152c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67162c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67172c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
671849abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67192c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67202c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6722394ed5ebSJunchao Zhang }
6723394ed5ebSJunchao Zhang 
6724d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6725d71ae5a4SJacob Faibussowitsch {
6726394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6727394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6728394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67292c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67302c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67312c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67322c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67332c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67342c4ab24aSJunchao Zhang   PetscContainer       container;
67352c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6736394ed5ebSJunchao Zhang 
6737394ed5ebSJunchao Zhang   PetscFunctionBegin;
67382c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67392c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67402c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67412c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67422c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67432c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67442c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67452c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67462c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67472c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67482c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67492c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67502c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67512c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67522c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67532c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67542c4ab24aSJunchao Zhang 
67559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6757394ed5ebSJunchao Zhang 
6758394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67592c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6760394ed5ebSJunchao Zhang 
6761394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67622c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6763394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67642c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6765da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6766158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6767158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6768394ed5ebSJunchao Zhang   }
67692c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6770158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6771158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6772158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6773394ed5ebSJunchao Zhang   }
67742c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6775394ed5ebSJunchao Zhang 
6776394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67772c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6778394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6779394ed5ebSJunchao Zhang   }
67802c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6781394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6782394ed5ebSJunchao Zhang   }
67839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6786394ed5ebSJunchao Zhang }
6787394ed5ebSJunchao Zhang 
6788ccd8e176SBarry Smith /*MC
6789ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6790ccd8e176SBarry Smith 
6791ccd8e176SBarry Smith    Options Database Keys:
679211a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6793ccd8e176SBarry Smith 
6794ccd8e176SBarry Smith    Level: beginner
67950cd7f59aSBarry Smith 
67960cd7f59aSBarry Smith    Notes:
67972ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
67980cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
67990cd7f59aSBarry Smith     in the matrix
68000cd7f59aSBarry Smith 
680111a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
680211a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6803ccd8e176SBarry Smith 
68041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6805ccd8e176SBarry Smith M*/
6806d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6807d71ae5a4SJacob Faibussowitsch {
6808ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6809ccd8e176SBarry Smith   PetscMPIInt size;
6810ccd8e176SBarry Smith 
6811ccd8e176SBarry Smith   PetscFunctionBegin;
68129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68132205254eSKarl Rupp 
68144dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6815ccd8e176SBarry Smith   B->data       = (void *)b;
6816aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6817ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6818ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6819ccd8e176SBarry Smith   b->size       = size;
68202205254eSKarl Rupp 
68219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6822ccd8e176SBarry Smith 
6823ccd8e176SBarry Smith   /* build cache for off array entries formed */
68249566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68252205254eSKarl Rupp 
6826ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6827f4259b30SLisandro Dalcin   b->colmap      = NULL;
6828f4259b30SLisandro Dalcin   b->garray      = NULL;
6829ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6830ccd8e176SBarry Smith 
6831ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68320298fd71SBarry Smith   b->lvec  = NULL;
68330298fd71SBarry Smith   b->Mvctx = NULL;
6834ccd8e176SBarry Smith 
6835ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6836f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6837f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6838ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6839ccd8e176SBarry Smith 
6840f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68410298fd71SBarry Smith   b->spptr = NULL;
6842f60c3dc2SHong Zhang 
68439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6849674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
68509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68539566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68543d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68563d0639e7SStefano Zampini #endif
6857d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6858d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6859d5e393b6SSuyash Tandon #endif
68603d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68623d0639e7SStefano Zampini #endif
68639779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6865191b95cbSRichard Tran Mills #endif
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68705d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68719566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68725d7652ecSHong Zhang #endif
6873d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
68749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6875d24d4204SJose E. Roman #endif
68769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68783dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68813dad0653Sstefano_zampini #endif
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
68869566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
68873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6888ccd8e176SBarry Smith }
688981824310SBarry Smith 
68905d83a8b1SBarry Smith /*@
689111a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
689203bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
689303bfb495SBarry Smith 
6894d083f849SBarry Smith   Collective
689503bfb495SBarry Smith 
689603bfb495SBarry Smith   Input Parameters:
689703bfb495SBarry Smith + comm - MPI communicator
689811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
689903bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6900d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69012ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69022ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69032ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6904483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
690504ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
690603bfb495SBarry Smith . a    - matrix values
6907483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69082ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
690903bfb495SBarry Smith - oa   - matrix values
691003bfb495SBarry Smith 
691103bfb495SBarry Smith   Output Parameter:
691203bfb495SBarry Smith . mat - the matrix
691303bfb495SBarry Smith 
691403bfb495SBarry Smith   Level: advanced
691503bfb495SBarry Smith 
691603bfb495SBarry Smith   Notes:
6917f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6918292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
691903bfb495SBarry Smith 
69202ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
692103bfb495SBarry Smith 
69222ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
692303bfb495SBarry Smith 
69247b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69257b55108eSBarry Smith 
6926dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6927dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6928dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6929dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
693011a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6931dca341c0SJed Brown   communication if it is known that only local entries will be set.
693203bfb495SBarry Smith 
69331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6934db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69352b26979fSBarry Smith @*/
6936d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6937d71ae5a4SJacob Faibussowitsch {
693803bfb495SBarry Smith   Mat_MPIAIJ *maij;
693903bfb495SBarry Smith 
694003bfb495SBarry Smith   PetscFunctionBegin;
694108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6942aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6943aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69449566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69459566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69469566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
694703bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69482205254eSKarl Rupp 
69498d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
695003bfb495SBarry Smith 
69519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
695303bfb495SBarry Smith 
69549566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69559566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
695603bfb495SBarry Smith 
69579566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69609566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69619566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
696303bfb495SBarry Smith }
696403bfb495SBarry Smith 
69654e84afc0SStefano Zampini typedef struct {
69664e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69674e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69684e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69694e84afc0SStefano Zampini 
69704e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69714e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69724e84afc0SStefano Zampini   PetscScalar *bufa;
69734e84afc0SStefano Zampini   Mat          P_oth;
69744e84afc0SStefano Zampini 
69754e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6976ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69774e84afc0SStefano Zampini 
6978ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69794e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69804e84afc0SStefano Zampini      of the temporary storage */
69814e84afc0SStefano Zampini   PetscBool reusesym;
69824e84afc0SStefano Zampini 
69834e84afc0SStefano Zampini   /* support for COO values insertion */
6984ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6985ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
6986ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
6987ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
6988c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
6989c215019aSStefano Zampini   PetscMemType mtype;
69904e84afc0SStefano Zampini 
69914e84afc0SStefano Zampini   /* customization */
69924e84afc0SStefano Zampini   PetscBool abmerge;
6993abb89eb1SStefano Zampini   PetscBool P_oth_bind;
69944e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
69954e84afc0SStefano Zampini 
6996ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
6997d71ae5a4SJacob Faibussowitsch {
69984e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
69994e84afc0SStefano Zampini   PetscInt             i;
70004e84afc0SStefano Zampini 
70014e84afc0SStefano Zampini   PetscFunctionBegin;
70029566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70039566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70049566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70059566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70069566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70079566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70089566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
700948a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70109566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70119566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70129566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70139566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70149566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70159566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70174e84afc0SStefano Zampini }
70184e84afc0SStefano Zampini 
7019fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7020fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7021fff043a9SJunchao Zhang  */
7022d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7023d71ae5a4SJacob Faibussowitsch {
7024c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7025c215019aSStefano Zampini 
7026c215019aSStefano Zampini   PetscFunctionBegin;
70279566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7028c215019aSStefano Zampini   if (f) {
70299566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7030c215019aSStefano Zampini   } else {
7031c215019aSStefano Zampini     const PetscScalar *vv;
7032c215019aSStefano Zampini 
70339566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7034c215019aSStefano Zampini     if (n && idx) {
7035c215019aSStefano Zampini       PetscScalar    *w  = v;
7036c215019aSStefano Zampini       const PetscInt *oi = idx;
7037c215019aSStefano Zampini       PetscInt        j;
7038c215019aSStefano Zampini 
7039c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7040c215019aSStefano Zampini     } else {
70419566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7042c215019aSStefano Zampini     }
70439566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7044c215019aSStefano Zampini   }
70453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7046c215019aSStefano Zampini }
7047c215019aSStefano Zampini 
7048d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7049d71ae5a4SJacob Faibussowitsch {
70504e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70514e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70524e84afc0SStefano Zampini 
70534e84afc0SStefano Zampini   PetscFunctionBegin;
70544e84afc0SStefano Zampini   MatCheckProduct(C, 1);
705528b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70564e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70574e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
705848a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
705948a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70604e84afc0SStefano Zampini   }
70614e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7062abb89eb1SStefano Zampini 
7063abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
706408401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70659566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7066abb89eb1SStefano Zampini   }
70674e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70686497c311SBarry Smith     PetscInt noff;
70694e84afc0SStefano Zampini 
70706497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
70714e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70724e84afc0SStefano Zampini     if (noff) {
70736497c311SBarry Smith       PetscInt nown;
7074c215019aSStefano Zampini 
70756497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
70769566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70779566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70784e84afc0SStefano Zampini       n_o += noff;
70794e84afc0SStefano Zampini       n_d += nown;
70804e84afc0SStefano Zampini     } else {
7081c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7082c215019aSStefano Zampini 
70839566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70844e84afc0SStefano Zampini       n_d += mm->nz;
70854e84afc0SStefano Zampini     }
70864e84afc0SStefano Zampini   }
7087c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
70889566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70899566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70904e84afc0SStefano Zampini   }
70919566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
70923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70934e84afc0SStefano Zampini }
70944e84afc0SStefano Zampini 
70954e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
70964e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7097d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7098d71ae5a4SJacob Faibussowitsch {
70994e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7100ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71014e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71024e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71034e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71044e84afc0SStefano Zampini   IS                     glob      = NULL;
71054e84afc0SStefano Zampini   const char            *prefix;
71064e84afc0SStefano Zampini   char                   pprefix[256];
71074e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
710882a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
710982a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7110ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7111ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7112ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7113ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7114ddea5d60SJunchao Zhang 
71154e84afc0SStefano Zampini   MatProductType ptype;
7116d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71174e84afc0SStefano Zampini   PetscMPIInt    size;
71184e84afc0SStefano Zampini 
71194e84afc0SStefano Zampini   PetscFunctionBegin;
71204e84afc0SStefano Zampini   MatCheckProduct(C, 1);
712128b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71224e84afc0SStefano Zampini   ptype = product->type;
7123b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7124fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7125fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7126fa046f9fSJunchao Zhang   }
71274e84afc0SStefano Zampini   switch (ptype) {
71284e84afc0SStefano Zampini   case MATPRODUCT_AB:
71294e84afc0SStefano Zampini     A          = product->A;
71304e84afc0SStefano Zampini     P          = product->B;
71314e84afc0SStefano Zampini     m          = A->rmap->n;
71324e84afc0SStefano Zampini     n          = P->cmap->n;
71334e84afc0SStefano Zampini     M          = A->rmap->N;
71344e84afc0SStefano Zampini     N          = P->cmap->N;
7135ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71364e84afc0SStefano Zampini     break;
71374e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71384e84afc0SStefano Zampini     P          = product->A;
71394e84afc0SStefano Zampini     A          = product->B;
71404e84afc0SStefano Zampini     m          = P->cmap->n;
71414e84afc0SStefano Zampini     n          = A->cmap->n;
71424e84afc0SStefano Zampini     M          = P->cmap->N;
71434e84afc0SStefano Zampini     N          = A->cmap->N;
71444e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71454e84afc0SStefano Zampini     break;
71464e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71474e84afc0SStefano Zampini     A          = product->A;
71484e84afc0SStefano Zampini     P          = product->B;
71494e84afc0SStefano Zampini     m          = P->cmap->n;
71504e84afc0SStefano Zampini     n          = P->cmap->n;
71514e84afc0SStefano Zampini     M          = P->cmap->N;
71524e84afc0SStefano Zampini     N          = P->cmap->N;
71534e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71544e84afc0SStefano Zampini     break;
7155d71ae5a4SJacob Faibussowitsch   default:
7156d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71574e84afc0SStefano Zampini   }
71589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71594e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71604e84afc0SStefano Zampini 
71614e84afc0SStefano Zampini   /* defaults */
71624e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71634e84afc0SStefano Zampini     mp[i]    = NULL;
71644e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71654e84afc0SStefano Zampini     rmapt[i] = -1;
71664e84afc0SStefano Zampini     cmapt[i] = -1;
71674e84afc0SStefano Zampini     rmapa[i] = NULL;
71684e84afc0SStefano Zampini     cmapa[i] = NULL;
71694e84afc0SStefano Zampini   }
71704e84afc0SStefano Zampini 
71714e84afc0SStefano Zampini   /* customization */
71729566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71734e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71744e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71754e84afc0SStefano Zampini     if (product->api_user) {
7176d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71779566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71789566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7179d0609cedSBarry Smith       PetscOptionsEnd();
71804e84afc0SStefano Zampini     } else {
7181d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71829566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71839566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7184d0609cedSBarry Smith       PetscOptionsEnd();
7185abb89eb1SStefano Zampini     }
7186abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7187abb89eb1SStefano Zampini     if (product->api_user) {
7188d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
71899566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7190d0609cedSBarry Smith       PetscOptionsEnd();
7191abb89eb1SStefano Zampini     } else {
7192d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
71939566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7194d0609cedSBarry Smith       PetscOptionsEnd();
71954e84afc0SStefano Zampini     }
71964e84afc0SStefano Zampini   }
71974e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
71984e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
71999566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72029566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72039566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7204ddea5d60SJunchao Zhang 
7205ddea5d60SJunchao Zhang   cp = 0;
72064e84afc0SStefano Zampini   switch (ptype) {
72074e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72089566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72094e84afc0SStefano Zampini 
7210ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7211ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72124e84afc0SStefano Zampini       /* P is product->B */
72139566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72149566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72159566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72169566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72179566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72189566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72199566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72204e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72219566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72229566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72239566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72244e84afc0SStefano Zampini       rmapt[cp] = 1;
72254e84afc0SStefano Zampini       cmapt[cp] = 2;
72264e84afc0SStefano Zampini       cmapa[cp] = globidx;
72274e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72284e84afc0SStefano Zampini       cp++;
7229ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72309566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72319566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72329566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72339566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72349566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72359566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72364e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72379566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72389566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72394e84afc0SStefano Zampini       rmapt[cp] = 1;
72404e84afc0SStefano Zampini       cmapt[cp] = 1;
72414e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72424e84afc0SStefano Zampini       cp++;
72439566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72449566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72459566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72469566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72479566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72489566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72494e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72509566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72519566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72524e84afc0SStefano Zampini       rmapt[cp] = 1;
72534e84afc0SStefano Zampini       cmapt[cp] = 2;
72544e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72554e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72564e84afc0SStefano Zampini       cp++;
72574e84afc0SStefano Zampini     }
7258ddea5d60SJunchao Zhang 
7259ddea5d60SJunchao Zhang     /* A_off * P_other */
72604e84afc0SStefano Zampini     if (mmdata->P_oth) {
72619566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72629566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7263f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
72649566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72659566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72669566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72679566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72689566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72699566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72709566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72714e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72729566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72739566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72744e84afc0SStefano Zampini       rmapt[cp] = 1;
72754e84afc0SStefano Zampini       cmapt[cp] = 2;
72764e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72774e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72784e84afc0SStefano Zampini       cp++;
72794e84afc0SStefano Zampini     }
72804e84afc0SStefano Zampini     break;
7281ddea5d60SJunchao Zhang 
72824e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72834e84afc0SStefano Zampini     /* A is product->B */
72849566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7285ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
72869566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
72879566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72889566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72899566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72909566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72919566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72924e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72939566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72949566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72959566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72964e84afc0SStefano Zampini       rmapt[cp] = 2;
72974e84afc0SStefano Zampini       rmapa[cp] = globidx;
72984e84afc0SStefano Zampini       cmapt[cp] = 2;
72994e84afc0SStefano Zampini       cmapa[cp] = globidx;
73004e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73014e84afc0SStefano Zampini       cp++;
73024e84afc0SStefano Zampini     } else {
73039566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73049566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73069566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73079566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73089566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73094e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73109566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73119566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73129566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73134e84afc0SStefano Zampini       rmapt[cp] = 1;
73144e84afc0SStefano Zampini       cmapt[cp] = 2;
73154e84afc0SStefano Zampini       cmapa[cp] = globidx;
73164e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73174e84afc0SStefano Zampini       cp++;
73189566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73199566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73209566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73219566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73229566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73239566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73244e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73259566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73269566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73274e84afc0SStefano Zampini       rmapt[cp] = 2;
73284e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73294e84afc0SStefano Zampini       cmapt[cp] = 2;
73304e84afc0SStefano Zampini       cmapa[cp] = globidx;
73314e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73324e84afc0SStefano Zampini       cp++;
73334e84afc0SStefano Zampini     }
73344e84afc0SStefano Zampini     break;
73354e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73369566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73374e84afc0SStefano Zampini     /* P is product->B */
73389566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73399566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73409566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73419566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73429566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73439566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73449566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73454e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73469566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73479566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73489566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73494e84afc0SStefano Zampini     rmapt[cp] = 2;
73504e84afc0SStefano Zampini     rmapa[cp] = globidx;
73514e84afc0SStefano Zampini     cmapt[cp] = 2;
73524e84afc0SStefano Zampini     cmapa[cp] = globidx;
73534e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73544e84afc0SStefano Zampini     cp++;
73554e84afc0SStefano Zampini     if (mmdata->P_oth) {
73569566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73579566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7358f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73599566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73609566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73619566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73629566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73639566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73649566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73659566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73664e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73679566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73689566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73694e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73704e84afc0SStefano Zampini       cp++;
73719566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73729566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73739566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73749566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73759566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73769566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73774e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73789566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73799566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73804e84afc0SStefano Zampini       rmapt[cp] = 2;
73814e84afc0SStefano Zampini       rmapa[cp] = globidx;
73824e84afc0SStefano Zampini       cmapt[cp] = 2;
73834e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73844e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73854e84afc0SStefano Zampini       cp++;
73864e84afc0SStefano Zampini     }
73874e84afc0SStefano Zampini     break;
7388d71ae5a4SJacob Faibussowitsch   default:
7389d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
73904e84afc0SStefano Zampini   }
73914e84afc0SStefano Zampini   /* sanity check */
73929371c9d4SSatish Balay   if (size > 1)
73939371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
73944e84afc0SStefano Zampini 
73959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7396ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7397ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7398ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7399ddea5d60SJunchao Zhang   }
74004e84afc0SStefano Zampini   mmdata->cp             = cp;
74014e84afc0SStefano Zampini   C->product->data       = mmdata;
74024e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74034e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74044e84afc0SStefano Zampini 
7405c215019aSStefano Zampini   /* memory type */
7406c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74079566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7408d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7410c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7411d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74123214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7413c215019aSStefano Zampini 
74144e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7415ddea5d60SJunchao Zhang 
7416ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7417ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7418ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7419ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7420ddea5d60SJunchao Zhang   */
74214e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74224e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74234e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7424ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74254e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74264e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74274e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74284e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74294e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74304e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74314e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74324e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7433ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7434ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74354e84afc0SStefano Zampini       }
74364e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74374e84afc0SStefano Zampini   }
7438ddea5d60SJunchao Zhang 
7439ddea5d60SJunchao Zhang   /*
7440ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7441ddea5d60SJunchao Zhang 
7442ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7443ddea5d60SJunchao Zhang 
7444d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7445ddea5d60SJunchao Zhang 
7446ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7447ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7448ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7449ddea5d60SJunchao Zhang 
7450ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7451da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7452ddea5d60SJunchao Zhang   */
74539566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7455ddea5d60SJunchao Zhang 
7456ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7457ddea5d60SJunchao Zhang   if (hasoffproc) {
74584e84afc0SStefano Zampini     PetscSF  msf;
74594e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74604e84afc0SStefano Zampini 
74619566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74629566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7464ddea5d60SJunchao Zhang 
74654e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74664e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74674e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74684e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7469ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74704e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74714e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74724e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74734e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74744e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74754e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74764e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74774e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74784e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74794e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74804e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74814e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74824e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7483ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74844e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74854e84afc0SStefano Zampini               *coi++    = gr;
74864e84afc0SStefano Zampini               *idxoff++ = j;
74874e84afc0SStefano Zampini             }
74884e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
74894e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
74904e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
74914e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
74924e84afc0SStefano Zampini             } else { /* offdiag */
74934e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
74944e84afc0SStefano Zampini             }
74954e84afc0SStefano Zampini             ncoo_o += nz;
7496ddea5d60SJunchao Zhang           } else { /* this is a local row */
74974e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
74984e84afc0SStefano Zampini           }
74994e84afc0SStefano Zampini         }
75004e84afc0SStefano Zampini       }
75014e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75024e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75034e84afc0SStefano Zampini     }
75044e84afc0SStefano Zampini 
75059566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75066497c311SBarry Smith     PetscInt incoo_o;
75076497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75086497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75099566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75109566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75114e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75139566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75149566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75159566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75169566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75179566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7518ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75199566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75204e84afc0SStefano Zampini     coo_i = coo_i2;
75214e84afc0SStefano Zampini     coo_j = coo_j2;
75224e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75234e84afc0SStefano Zampini     ncoo = ncoo_d;
75249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7525c215019aSStefano Zampini 
75269566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75279566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75289566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75294e84afc0SStefano Zampini   }
7530c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75314e84afc0SStefano Zampini 
7532ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75334e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75344e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75354e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75364e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75374e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75384e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75394e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75404e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75414e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75424e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75434e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75444e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75454e84afc0SStefano Zampini 
75464e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7547ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7548ddea5d60SJunchao Zhang       /* fill coo_i */
75494e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75504e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75514e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75524e84afc0SStefano Zampini       }
7553ddea5d60SJunchao Zhang       /* fill coo_j */
7554ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75559566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7556ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7557ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7558ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75594e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75604e84afc0SStefano Zampini       }
75614e84afc0SStefano Zampini       ncoo_d += mm->nz;
7562ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75634e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75644e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75654e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75664e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7567ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75684e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7569ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75704e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75714e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75724e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7573ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75744e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75754e84afc0SStefano Zampini           }
75764e84afc0SStefano Zampini           ncoo_d += nz;
75774e84afc0SStefano Zampini         }
75784e84afc0SStefano Zampini       }
75794e84afc0SStefano Zampini     }
75804e84afc0SStefano Zampini   }
758148a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75829566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
758348a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75849566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7585ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
75869566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
75874e84afc0SStefano Zampini 
758839cfb508SMark Adams   /* set block sizes */
758939cfb508SMark Adams   A = product->A;
759039cfb508SMark Adams   P = product->B;
759139cfb508SMark Adams   switch (ptype) {
759239cfb508SMark Adams   case MATPRODUCT_PtAP:
759358b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
759439cfb508SMark Adams     break;
759539cfb508SMark Adams   case MATPRODUCT_RARt:
759658b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
759739cfb508SMark Adams     break;
759839cfb508SMark Adams   case MATPRODUCT_ABC:
759939cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
760039cfb508SMark Adams     break;
760139cfb508SMark Adams   case MATPRODUCT_AB:
760239cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
760339cfb508SMark Adams     break;
760439cfb508SMark Adams   case MATPRODUCT_AtB:
760558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
760639cfb508SMark Adams     break;
760739cfb508SMark Adams   case MATPRODUCT_ABt:
760858b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
760939cfb508SMark Adams     break;
761039cfb508SMark Adams   default:
761139cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
761239cfb508SMark Adams   }
761339cfb508SMark Adams 
76144e84afc0SStefano Zampini   /* preallocate with COO data */
76159566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76184e84afc0SStefano Zampini }
76194e84afc0SStefano Zampini 
7620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7621d71ae5a4SJacob Faibussowitsch {
76224e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76234e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76244e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7625abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76264e84afc0SStefano Zampini #else
76274e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76284e84afc0SStefano Zampini #endif
76294e84afc0SStefano Zampini 
76304e84afc0SStefano Zampini   PetscFunctionBegin;
76314e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76324e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
763348a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
763465e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7635abb89eb1SStefano Zampini     switch (product->type) {
7636abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7637abb89eb1SStefano Zampini       if (product->api_user) {
7638d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76399566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7640d0609cedSBarry Smith         PetscOptionsEnd();
7641abb89eb1SStefano Zampini       } else {
7642d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76439566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7644d0609cedSBarry Smith         PetscOptionsEnd();
7645abb89eb1SStefano Zampini       }
7646abb89eb1SStefano Zampini       break;
7647abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7648abb89eb1SStefano Zampini       if (product->api_user) {
7649d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76509566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7651d0609cedSBarry Smith         PetscOptionsEnd();
7652abb89eb1SStefano Zampini       } else {
7653d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76549566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7655d0609cedSBarry Smith         PetscOptionsEnd();
7656abb89eb1SStefano Zampini       }
7657abb89eb1SStefano Zampini       break;
7658abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7659abb89eb1SStefano Zampini       if (product->api_user) {
7660d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76619566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7662d0609cedSBarry Smith         PetscOptionsEnd();
7663abb89eb1SStefano Zampini       } else {
7664d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76659566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7666d0609cedSBarry Smith         PetscOptionsEnd();
7667abb89eb1SStefano Zampini       }
7668abb89eb1SStefano Zampini       break;
7669d71ae5a4SJacob Faibussowitsch     default:
7670d71ae5a4SJacob Faibussowitsch       break;
7671abb89eb1SStefano Zampini     }
7672abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7673abb89eb1SStefano Zampini   }
76744e84afc0SStefano Zampini #endif
76754e84afc0SStefano Zampini   if (match) {
76764e84afc0SStefano Zampini     switch (product->type) {
76774e84afc0SStefano Zampini     case MATPRODUCT_AB:
76784e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7679d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7680d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7681d71ae5a4SJacob Faibussowitsch       break;
7682d71ae5a4SJacob Faibussowitsch     default:
7683d71ae5a4SJacob Faibussowitsch       break;
76844e84afc0SStefano Zampini     }
76854e84afc0SStefano Zampini   }
76864e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76879566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768981824310SBarry Smith }
769098921bdaSJacob Faibussowitsch 
769198921bdaSJacob Faibussowitsch /*
769272833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
769372833a62Smarkadams4 
769472833a62Smarkadams4    n - the number of block indices in cc[]
769572833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
769672833a62Smarkadams4 */
7697d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7698d71ae5a4SJacob Faibussowitsch {
769972833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
770072833a62Smarkadams4   const PetscInt *idx;
770172833a62Smarkadams4 
770272833a62Smarkadams4   PetscFunctionBegin;
770372833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
770472833a62Smarkadams4   if (nidx) {
770572833a62Smarkadams4     cnt     = 0;
770672833a62Smarkadams4     cc[cnt] = idx[0] / bs;
770772833a62Smarkadams4     for (j = 1; j < nidx; j++) {
770872833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
770972833a62Smarkadams4     }
771072833a62Smarkadams4   }
771172833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
771272833a62Smarkadams4   *n = cnt + 1;
77133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771472833a62Smarkadams4 }
771572833a62Smarkadams4 
771672833a62Smarkadams4 /*
771772833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
771872833a62Smarkadams4 
771972833a62Smarkadams4     ncollapsed - the number of block indices
772072833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
772172833a62Smarkadams4 */
7722d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7723d71ae5a4SJacob Faibussowitsch {
772472833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
772572833a62Smarkadams4 
772672833a62Smarkadams4   PetscFunctionBegin;
772772833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
772872833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
772972833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
773072833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77319371c9d4SSatish Balay     cprevtmp = cprev;
77329371c9d4SSatish Balay     cprev    = merged;
77339371c9d4SSatish Balay     merged   = cprevtmp;
773472833a62Smarkadams4   }
773572833a62Smarkadams4   *ncollapsed = nprev;
773672833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773872833a62Smarkadams4 }
773972833a62Smarkadams4 
77402d776b49SBarry Smith /*
774172833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
774272833a62Smarkadams4 
774372833a62Smarkadams4  Input Parameter:
774472833a62Smarkadams4  . Amat - matrix
774572833a62Smarkadams4  - symmetrize - make the result symmetric
774672833a62Smarkadams4  + scale - scale with diagonal
774772833a62Smarkadams4 
774872833a62Smarkadams4  Output Parameter:
774972833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
775072833a62Smarkadams4 
775172833a62Smarkadams4 */
7752e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7753d71ae5a4SJacob Faibussowitsch {
775472833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
775572833a62Smarkadams4   MPI_Comm  comm;
775672833a62Smarkadams4   Mat       Gmat;
775772833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
775872833a62Smarkadams4   Mat       a, b, c;
775972833a62Smarkadams4   MatType   jtype;
776072833a62Smarkadams4 
776172833a62Smarkadams4   PetscFunctionBegin;
776272833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
776372833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
776472833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
776572833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
776672833a62Smarkadams4   nloc = (Iend - Istart) / bs;
776772833a62Smarkadams4 
776872833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
776972833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
777072833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
777172833a62Smarkadams4 
777272833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
777372833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
777472833a62Smarkadams4      implementation */
777572833a62Smarkadams4   if (bs > 1) {
777672833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
777772833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
777872833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
777972833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
778072833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
778172833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
778272833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77832cf69117Smarkadams4       MatScalar *aa, val, *AA;
77842cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77856497c311SBarry Smith 
77869371c9d4SSatish Balay       if (isseqaij) {
77879371c9d4SSatish Balay         a = Amat;
77889371c9d4SSatish Balay         b = NULL;
77899371c9d4SSatish Balay       } else {
779072833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77919371c9d4SSatish Balay         a             = d->A;
77929371c9d4SSatish Balay         b             = d->B;
779372833a62Smarkadams4       }
779472833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
779532603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
779672833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77972cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
779859ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
77996497c311SBarry Smith 
780059ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
780159ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
780259ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
780359ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
780472833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
780559ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
780659ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
780759ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
780859ee9f9fSPierre Jolivet             else {
780959ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
781059ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
781159ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
781272833a62Smarkadams4               }
781359ee9f9fSPierre Jolivet             }
781459ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
781559ee9f9fSPierre Jolivet           }
781659ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
781772833a62Smarkadams4           if (!ok) {
781872833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
781959ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
782072833a62Smarkadams4             goto old_bs;
782172833a62Smarkadams4           }
782272833a62Smarkadams4         }
782372833a62Smarkadams4       }
782472833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
782572833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
782672833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78272cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
782872833a62Smarkadams4       // diag
782972833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
783072833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78316497c311SBarry Smith 
783272833a62Smarkadams4         ai = aseq->i;
783372833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
783472833a62Smarkadams4         aj = aseq->j + ai[brow];
78356497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
783672833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
783772833a62Smarkadams4           val        = 0;
7838e02fb3cdSMark Adams           if (index_size == 0) {
78396497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
784072833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78416497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
784272833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
784372833a62Smarkadams4               }
784472833a62Smarkadams4             }
7845e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78466497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78476497c311SBarry Smith               PetscInt ii = index[iii];
7848e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78496497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78506497c311SBarry Smith                 PetscInt jj = index[jjj];
7851cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7852e02fb3cdSMark Adams               }
7853e02fb3cdSMark Adams             }
7854e02fb3cdSMark Adams           }
7855835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
785672833a62Smarkadams4           AA[k / bs] = val;
785772833a62Smarkadams4         }
785872833a62Smarkadams4         grow = Istart / bs + brow / bs;
785966521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
786072833a62Smarkadams4       }
786172833a62Smarkadams4       // off-diag
786272833a62Smarkadams4       if (ismpiaij) {
786372833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
786472833a62Smarkadams4         const PetscScalar *vals;
786572833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78666497c311SBarry Smith 
786772833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
786872833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
786972833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78706497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
787159ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
787272833a62Smarkadams4             AA[k / bs] = 0;
787372833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
787472833a62Smarkadams4           }
787572833a62Smarkadams4           nc = ncols / bs;
787672833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7877e02fb3cdSMark Adams           if (index_size == 0) {
78786497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
787972833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78806497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78816497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7882835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
788372833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
788472833a62Smarkadams4                 }
788572833a62Smarkadams4               }
788672833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
788772833a62Smarkadams4             }
7888e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78896497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78906497c311SBarry Smith               PetscInt ii = index[iii];
7891e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78926497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78936497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
78946497c311SBarry Smith                   PetscInt jj = index[jjj];
7895e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7896e02fb3cdSMark Adams                 }
7897e02fb3cdSMark Adams               }
7898e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7899e02fb3cdSMark Adams             }
7900e02fb3cdSMark Adams           }
790172833a62Smarkadams4           grow = Istart / bs + brow / bs;
790266521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
790372833a62Smarkadams4         }
790472833a62Smarkadams4       }
790572833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
790672833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79072cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
790872833a62Smarkadams4     } else {
790972833a62Smarkadams4       const PetscScalar *vals;
791072833a62Smarkadams4       const PetscInt    *idx;
791172833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
791272833a62Smarkadams4     old_bs:
791372833a62Smarkadams4       /*
791472833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
791572833a62Smarkadams4        */
791672833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
791732603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
791872833a62Smarkadams4       if (isseqaij) {
791972833a62Smarkadams4         PetscInt max_d_nnz;
79206497c311SBarry Smith 
792172833a62Smarkadams4         /*
792272833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
792372833a62Smarkadams4          */
792472833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
792572833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
792672833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
792748a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792872833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792972833a62Smarkadams4       } else if (ismpiaij) {
793072833a62Smarkadams4         Mat             Daij, Oaij;
793172833a62Smarkadams4         const PetscInt *garray;
793272833a62Smarkadams4         PetscInt        max_d_nnz;
79336497c311SBarry Smith 
793472833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
793572833a62Smarkadams4         /*
793672833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
793772833a62Smarkadams4          */
793872833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
793972833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794072833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
794148a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
794272833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794372833a62Smarkadams4         /*
794472833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
794572833a62Smarkadams4          */
794672833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
794772833a62Smarkadams4           o_nnz[jj] = 0;
794872833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
794972833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795072833a62Smarkadams4             o_nnz[jj] += ncols;
795172833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795272833a62Smarkadams4           }
795372833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
795472833a62Smarkadams4         }
795572833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
795672833a62Smarkadams4       /* get scalar copy (norms) of matrix */
795772833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
795872833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
795972833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
796072833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
796172833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79626497c311SBarry Smith 
796372833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
796472833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
796572833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
796672833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79676497c311SBarry Smith 
796872833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
796972833a62Smarkadams4         }
797072833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
797172833a62Smarkadams4       }
797272833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797372833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
797472833a62Smarkadams4     }
797572833a62Smarkadams4   } else {
79762d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79772d776b49SBarry Smith     else {
79782d776b49SBarry Smith       Gmat = Amat;
79792d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79802d776b49SBarry Smith     }
79819371c9d4SSatish Balay     if (isseqaij) {
79829371c9d4SSatish Balay       a = Gmat;
79839371c9d4SSatish Balay       b = NULL;
79849371c9d4SSatish Balay     } else {
798572833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79869371c9d4SSatish Balay       a             = d->A;
79879371c9d4SSatish Balay       b             = d->B;
798872833a62Smarkadams4     }
79892d776b49SBarry Smith     if (filter >= 0 || scale) {
79902d776b49SBarry Smith       /* take absolute value of each entry */
799172833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
799272833a62Smarkadams4         MatInfo      info;
799372833a62Smarkadams4         PetscScalar *avals;
79946497c311SBarry Smith 
799572833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
799672833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
799772833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
799872833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
799972833a62Smarkadams4       }
800072833a62Smarkadams4     }
80012d776b49SBarry Smith   }
800272833a62Smarkadams4   if (symmetrize) {
8003b94d7dedSBarry Smith     PetscBool isset, issym;
80046497c311SBarry Smith 
8005b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8006b94d7dedSBarry Smith     if (!isset || !issym) {
800772833a62Smarkadams4       Mat matTrans;
80086497c311SBarry Smith 
800972833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80101fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
801172833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
801272833a62Smarkadams4     }
801372833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80142d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801572833a62Smarkadams4   if (scale) {
801672833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
801772833a62Smarkadams4     Vec diag;
80186497c311SBarry Smith 
801972833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
802072833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
802172833a62Smarkadams4     PetscCall(VecReciprocal(diag));
802272833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802372833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802472833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802572833a62Smarkadams4   }
802672833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80272d776b49SBarry Smith   if (filter >= 0) {
80282ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80292ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80302d776b49SBarry Smith   }
803172833a62Smarkadams4   *a_Gmat = Gmat;
80323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803372833a62Smarkadams4 }
803472833a62Smarkadams4 
803503db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype)
803603db1824SAlex Lindsay {
803703db1824SAlex Lindsay   Mat_MPIAIJ  *mpiaij = (Mat_MPIAIJ *)A->data;
803803db1824SAlex Lindsay   PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST;
803903db1824SAlex Lindsay 
804003db1824SAlex Lindsay   PetscFunctionBegin;
804103db1824SAlex Lindsay   if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD));
804203db1824SAlex Lindsay   if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO));
804303db1824SAlex Lindsay   *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST;
804403db1824SAlex Lindsay   PetscFunctionReturn(PETSC_SUCCESS);
804503db1824SAlex Lindsay }
804603db1824SAlex Lindsay 
804772833a62Smarkadams4 /*
804898921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
804998921bdaSJacob Faibussowitsch */
805098921bdaSJacob Faibussowitsch 
805198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80529566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80539566063dSJacob Faibussowitsch #undef PetscCall
80549371c9d4SSatish Balay #define PetscCall(...) \
80559371c9d4SSatish Balay   do { \
80565f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
805798921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
805898921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
805998921bdaSJacob Faibussowitsch       return; \
806098921bdaSJacob Faibussowitsch     } \
806198921bdaSJacob Faibussowitsch   } while (0)
806298921bdaSJacob Faibussowitsch 
806398921bdaSJacob Faibussowitsch #undef SETERRQ
80649371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80659371c9d4SSatish Balay   do { \
806698921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
806798921bdaSJacob Faibussowitsch     return; \
806898921bdaSJacob Faibussowitsch   } while (0)
806998921bdaSJacob Faibussowitsch 
807098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
807198921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
807298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
807398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
807498921bdaSJacob Faibussowitsch #else
807598921bdaSJacob Faibussowitsch #endif
8076d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8077d71ae5a4SJacob Faibussowitsch {
807898921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
807998921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
808098921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
808198921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
808298921bdaSJacob Faibussowitsch   PetscScalar value;
808398921bdaSJacob Faibussowitsch 
808498921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
808598921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80865f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
808798921bdaSJacob Faibussowitsch   {
808898921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
808998921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
809098921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
809198921bdaSJacob Faibussowitsch 
809298921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
809398921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
809498921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
809598921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
809698921bdaSJacob Faibussowitsch     MatScalar  *aa;
8097f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
809898921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
809998921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
810098921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
810198921bdaSJacob Faibussowitsch     MatScalar  *ba;
810298921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
810398921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
810498921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
810598921bdaSJacob Faibussowitsch 
810698921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
810798921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
810898921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
810998921bdaSJacob Faibussowitsch 
811098921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81119566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81129566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
811398921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
811498921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81156bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
811698921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
811798921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
811898921bdaSJacob Faibussowitsch         lastcol1 = -1;
811998921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
812098921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
812198921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
812298921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
812398921bdaSJacob Faibussowitsch         low1     = 0;
812498921bdaSJacob Faibussowitsch         high1    = nrow1;
812598921bdaSJacob Faibussowitsch         lastcol2 = -1;
812698921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
812798921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
812898921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
812998921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
813098921bdaSJacob Faibussowitsch         low2     = 0;
813198921bdaSJacob Faibussowitsch         high2    = nrow2;
813298921bdaSJacob Faibussowitsch 
813398921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
813498921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
813598921bdaSJacob Faibussowitsch           else value = v[i + j * m];
813698921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
813798921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
813898921bdaSJacob Faibussowitsch             col = in[j] - cstart;
813998921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
814098921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
814198921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
814263a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
814398921bdaSJacob Faibussowitsch           } else {
814498921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
814548a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
814698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8147eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
814898921bdaSJacob Faibussowitsch               col--;
814998921bdaSJacob Faibussowitsch #else
815098921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
815198921bdaSJacob Faibussowitsch #endif
8152f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8153eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
815498921bdaSJacob Faibussowitsch                 col = in[j];
815598921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
815698921bdaSJacob Faibussowitsch                 B        = aij->B;
815798921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81589371c9d4SSatish Balay                 bimax    = b->imax;
81599371c9d4SSatish Balay                 bi       = b->i;
81609371c9d4SSatish Balay                 bilen    = b->ilen;
81619371c9d4SSatish Balay                 bj       = b->j;
816298921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
816398921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
816498921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
816598921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
816698921bdaSJacob Faibussowitsch                 low2     = 0;
816798921bdaSJacob Faibussowitsch                 high2    = nrow2;
816898921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
816998921bdaSJacob Faibussowitsch                 ba       = b->a;
817098921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
817198921bdaSJacob Faibussowitsch               }
817298921bdaSJacob Faibussowitsch             } else col = in[j];
817398921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
817498921bdaSJacob Faibussowitsch           }
817598921bdaSJacob Faibussowitsch         }
817698921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
817798921bdaSJacob Faibussowitsch         if (roworiented) {
81789566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817998921bdaSJacob Faibussowitsch         } else {
81809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
818198921bdaSJacob Faibussowitsch         }
818298921bdaSJacob Faibussowitsch       }
818398921bdaSJacob Faibussowitsch     }
81849566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81859566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
818698921bdaSJacob Faibussowitsch   }
818798921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
818898921bdaSJacob Faibussowitsch }
818972833a62Smarkadams4 
819098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
819198921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
819298921bdaSJacob Faibussowitsch  * original definitions */
81939566063dSJacob Faibussowitsch #undef PetscCall
819498921bdaSJacob Faibussowitsch #undef SETERRQ
8195