1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28086cff0a6bSPierre Jolivet NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28764cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287742ce410bSJunchao Zhang NULL, 287842ce410bSJunchao Zhang NULL, 2879fe1fc275SAlexander /*155*/ NULL, 2880fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 288136ce4990SBarry Smith 2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2883d71ae5a4SJacob Faibussowitsch { 28842e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28852e8a6d31SBarry Smith 28862e8a6d31SBarry Smith PetscFunctionBegin; 28879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28889566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28902e8a6d31SBarry Smith } 28912e8a6d31SBarry Smith 2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2893d71ae5a4SJacob Faibussowitsch { 28942e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28952e8a6d31SBarry Smith 28962e8a6d31SBarry Smith PetscFunctionBegin; 28979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28989566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29002e8a6d31SBarry Smith } 29018a729477SBarry Smith 2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2903d71ae5a4SJacob Faibussowitsch { 2904ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29055d2a9ed1SStefano Zampini PetscMPIInt size; 2906a23d5eceSKris Buschelman 2907a23d5eceSKris Buschelman PetscFunctionBegin; 2908ad79cf63SBarry Smith if (B->hash_active) { 2909aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2910ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2911ad79cf63SBarry Smith } 29129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2914899cda47SBarry Smith 2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2916eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2917cb7b82ddSBarry Smith #else 29189566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2919cb7b82ddSBarry Smith #endif 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2923cb7b82ddSBarry Smith 29249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2925c508b908SBarry Smith 2926c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2932c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2933cb7b82ddSBarry Smith 2934c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2935ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29369566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29399566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2940c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2941899cda47SBarry Smith 29429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2944526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2945cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294615001458SStefano Zampini B->assembled = PETSC_FALSE; 29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2948a23d5eceSKris Buschelman } 2949a23d5eceSKris Buschelman 2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2951d71ae5a4SJacob Faibussowitsch { 2952ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29534c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2954846b4da1SFande Kong 2955846b4da1SFande Kong PetscFunctionBegin; 2956846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29574c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29584c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29594c51d546SAlexander 29604c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29614c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29624c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 29634c51d546SAlexander PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29644c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29654c51d546SAlexander 29669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29684c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29694c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29709566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2971846b4da1SFande Kong 2972846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2973846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2974846b4da1SFande Kong B->assembled = PETSC_FALSE; 2975b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2976b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2978846b4da1SFande Kong } 2979846b4da1SFande Kong 2980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2981d71ae5a4SJacob Faibussowitsch { 2982d6dfbf8fSBarry Smith Mat mat; 2983416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2984d6dfbf8fSBarry Smith 29853a40ed3dSBarry Smith PetscFunctionBegin; 2986f4259b30SLisandro Dalcin *newmat = NULL; 29879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29909566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2991273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2992e1b6402fSHong Zhang 2993d5f3da31SBarry Smith mat->factortype = matin->factortype; 2994501880eeSStefano Zampini mat->assembled = matin->assembled; 2995e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2996d6dfbf8fSBarry Smith 299717699dbbSLois Curfman McInnes a->size = oldmat->size; 299817699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2999e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 3000e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 3001501880eeSStefano Zampini a->rowindices = NULL; 3002501880eeSStefano Zampini a->rowvalues = NULL; 3003bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 3004d6dfbf8fSBarry Smith 30059566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 30069566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3007420957c1SBarry Smith if (matin->hash_active) { 3008420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3009420957c1SBarry Smith } else { 3010420957c1SBarry Smith mat->preallocated = matin->preallocated; 30112ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3012aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3013eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3014b1fc9764SSatish Balay #else 30159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3017b1fc9764SSatish Balay #endif 3018501880eeSStefano Zampini } else a->colmap = NULL; 30193f41c07dSBarry Smith if (oldmat->garray) { 3020b1d57f15SBarry Smith PetscInt len; 3021d0f46423SBarry Smith len = oldmat->B->cmap->n; 30229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30239566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3024501880eeSStefano Zampini } else a->garray = NULL; 3025d6dfbf8fSBarry Smith 30260de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30270de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30280de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3029aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3030cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3031cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3032cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3033cff58d65SJunchao Zhang } 30349566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30359566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3036420957c1SBarry Smith } 30379566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30388a729477SBarry Smith *newmat = mat; 30393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30408a729477SBarry Smith } 3041416022c9SBarry Smith 3042d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3043d71ae5a4SJacob Faibussowitsch { 304452f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 304552f91c60SVaclav Hapla 304652f91c60SVaclav Hapla PetscFunctionBegin; 304752f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 304852f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3049c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30509566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 305352f91c60SVaclav Hapla if (isbinary) { 30549566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 305552f91c60SVaclav Hapla } else if (ishdf5) { 305652f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30579566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 305852f91c60SVaclav Hapla #else 305952f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 306052f91c60SVaclav Hapla #endif 306152f91c60SVaclav Hapla } else { 306298921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 306352f91c60SVaclav Hapla } 30643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306552f91c60SVaclav Hapla } 306652f91c60SVaclav Hapla 3067d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3068d71ae5a4SJacob Faibussowitsch { 30693ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30703ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30713ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30728fb81238SShri Abhyankar 30738fb81238SShri Abhyankar PetscFunctionBegin; 30749566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30758fb81238SShri Abhyankar 30763ea6fe3dSLisandro Dalcin /* read in matrix header */ 30779566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 307808401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30799371c9d4SSatish Balay M = header[1]; 30809371c9d4SSatish Balay N = header[2]; 30819371c9d4SSatish Balay nz = header[3]; 308208401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 308308401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 308408401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 308508ea439dSMark F. Adams 30863ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30879566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30883ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30893ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30903ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30938fb81238SShri Abhyankar 30943ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30959566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3096aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30978fb81238SShri Abhyankar 30983ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 31009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 31019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 31029371c9d4SSatish Balay rowidxs[0] = 0; 31039371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 31041690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3105462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 310608401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 310738b83642SBarry Smith } 310838b83642SBarry Smith 31093ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31109566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31119566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31133ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31159566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31169566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31188fb81238SShri Abhyankar } 31198fb81238SShri Abhyankar 31203782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3121ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3122d71ae5a4SJacob Faibussowitsch { 31234aa3045dSJed Brown IS iscol_local; 3124c5e4d11fSDmitry Karpeev PetscBool isstride; 31259725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31263782ecc7SHong Zhang 31273782ecc7SHong Zhang PetscFunctionBegin; 31283782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31303782ecc7SHong Zhang 3131c5e4d11fSDmitry Karpeev if (isstride) { 3132c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31339566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31359566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31369725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3137c5e4d11fSDmitry Karpeev } 31383782ecc7SHong Zhang 31399725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3140c5e4d11fSDmitry Karpeev if (gisstride) { 3141c5e4d11fSDmitry Karpeev PetscInt N; 31429566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31449566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31459566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3146c5e4d11fSDmitry Karpeev } else { 3147c5bfad50SMark F. Adams PetscInt cbs; 31489566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31499566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31509566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3151b79d0421SJed Brown } 31523782ecc7SHong Zhang 31533782ecc7SHong Zhang *isseq = iscol_local; 31543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3155c5e4d11fSDmitry Karpeev } 31568d2139bdSHong Zhang 3157ddfdf956SHong Zhang /* 31589c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31599c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3160ddfdf956SHong Zhang 3161ddfdf956SHong Zhang Input Parameters: 316227430b45SBarry Smith + mat - matrix 316327430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31649c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 316527430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3166ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 316727430b45SBarry Smith 316827430b45SBarry Smith Output Parameters: 316927430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 317027430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 317127430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 317227430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3173ddfdf956SHong Zhang */ 3174835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3175d71ae5a4SJacob Faibussowitsch { 3176040216a4SHong Zhang Vec x, cmap; 3177040216a4SHong Zhang const PetscInt *is_idx; 3178040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31799c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3180040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3181040216a4SHong Zhang Mat B = a->B; 3182040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3183a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31848b3fa1f7SHong Zhang MPI_Comm comm; 31853a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31863782ecc7SHong Zhang 31873782ecc7SHong Zhang PetscFunctionBegin; 31889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31908b3fa1f7SHong Zhang 3191ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31929566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31939566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31949566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31959566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31960a351717SHong Zhang 31979c988bcaSHong Zhang /* Get start indices */ 31989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3199ddfdf956SHong Zhang isstart -= ncols; 32009566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3201040216a4SHong Zhang 32029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 32039566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 32049566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 32059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3206ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32078b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3208ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32099c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32108b3fa1f7SHong Zhang } 32119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32148b3fa1f7SHong Zhang 32159c988bcaSHong Zhang /* Get iscol_d */ 32169566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32179566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32189566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3219feb78a15SHong Zhang 32209c988bcaSHong Zhang /* Get isrow_d */ 32219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3222feb78a15SHong Zhang rstart = mat->rmap->rstart; 32239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32259c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3227feb78a15SHong Zhang 32289566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32299566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32309566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3231feb78a15SHong Zhang 32329c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3235ddfdf956SHong Zhang 32369566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 323707250d77SHong Zhang 32389566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 324064efcef9SHong Zhang 32419c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3242ddfdf956SHong Zhang /* off-process column indices */ 32439c988bcaSHong Zhang count = 0; 32449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3246feb78a15SHong Zhang 32479566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32489566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32498b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3250f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32519c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32521c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32531c645242SHong Zhang count++; 32548b3fa1f7SHong Zhang } 32558b3fa1f7SHong Zhang } 32569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 325807250d77SHong Zhang 32599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3260b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3261b6d9b4e0SHong Zhang 32629566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32639c988bcaSHong Zhang *garray = cmap1; 32649c988bcaSHong Zhang 32659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3269040216a4SHong Zhang } 3270040216a4SHong Zhang 3271b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3272d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3273d71ae5a4SJacob Faibussowitsch { 3274b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32751fd43edeSHong Zhang Mat M = NULL; 32763b00a383SHong Zhang MPI_Comm comm; 3277b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32783b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3279c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32803b00a383SHong Zhang 32813b00a383SHong Zhang PetscFunctionBegin; 32829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32833b00a383SHong Zhang 32843b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3285b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32869566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 328728b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32883b00a383SHong Zhang 32899566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 329028b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32913b00a383SHong Zhang 32929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 329328b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32943b00a383SHong Zhang 3295b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3296b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32979566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 329948a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 33009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 33019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 33023b00a383SHong Zhang 33033b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3304c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3305b20e2604SHong Zhang PetscInt BsubN; 33063b00a383SHong Zhang 3307b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33089566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33093b00a383SHong Zhang 3310b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33119566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33133b00a383SHong Zhang 3314c0c276a7Ssdargavi // Compact garray so its not of size Bn 3315c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3316c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3317c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3318c0c276a7Ssdargavi 33199c988bcaSHong Zhang /* Create submatrix M */ 3320c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3321c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3322c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33233b00a383SHong Zhang 3324b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3325b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33267cfce09cSHong Zhang 33279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3328b20e2604SHong Zhang n = asub->B->cmap->N; 3329b20e2604SHong Zhang if (BsubN > n) { 3330c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33317cfce09cSHong Zhang const PetscInt *idx; 33329c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33339566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33347cfce09cSHong Zhang 33359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33367cfce09cSHong Zhang j = 0; 33379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3338b20e2604SHong Zhang for (i = 0; i < n; i++) { 33397cfce09cSHong Zhang if (j >= BsubN) break; 33409c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33417cfce09cSHong Zhang 33429c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33437cfce09cSHong Zhang idx_new[i] = idx[j++]; 334498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33457cfce09cSHong Zhang } 33469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33477cfce09cSHong Zhang 33489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33507cfce09cSHong Zhang 3351b20e2604SHong Zhang } else if (BsubN < n) { 335298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3353b20e2604SHong Zhang } 33547cfce09cSHong Zhang 33559566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3356b20e2604SHong Zhang *submat = M; 33573b00a383SHong Zhang 3358e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33599566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33613b00a383SHong Zhang 33629566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33643b00a383SHong Zhang 33659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33673b00a383SHong Zhang } 33683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33693b00a383SHong Zhang } 33703b00a383SHong Zhang 3371d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3372d71ae5a4SJacob Faibussowitsch { 33731358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33743782ecc7SHong Zhang PetscInt csize; 337518e627e3SHong Zhang PetscInt n, i, j, start, end; 33764a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33773782ecc7SHong Zhang MPI_Comm comm; 33783782ecc7SHong Zhang 33793782ecc7SHong Zhang PetscFunctionBegin; 3380bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3381a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33828f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33839566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3384d5761cdaSHong Zhang if (isrow_d) { 3385d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3386d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3387d5761cdaSHong Zhang } else { 33889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3389d5761cdaSHong Zhang if (iscol_local) { 3390d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3391d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3392d5761cdaSHong Zhang } 3393d5761cdaSHong Zhang } 33948f69fa7bSHong Zhang } else { 3395e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 339618e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33979566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33983782ecc7SHong Zhang if (!n) { 339918e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 34003782ecc7SHong Zhang } else { 34019566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 34029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3403ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 34048f69fa7bSHong Zhang } 34053782ecc7SHong Zhang 3406e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 340718e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 34089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 340918e627e3SHong Zhang if (!n) { 341018e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 341118e627e3SHong Zhang } else { 34129566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34139566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 341418e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 341518e627e3SHong Zhang } 341618e627e3SHong Zhang 34179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3418462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 341918e627e3SHong Zhang sameRowDist = tsameDist[0]; 342018e627e3SHong Zhang } 342118e627e3SHong Zhang 342218e627e3SHong Zhang if (sameRowDist) { 3423b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34243b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3427b20e2604SHong Zhang } else { /* sameRowDist */ 34283b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34291358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34301358a193SHong Zhang PetscBool sorted; 34319566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34339566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 343408401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34351358a193SHong Zhang 34369566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34371358a193SHong Zhang if (sorted) { 34381358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34399566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34413782ecc7SHong Zhang } 34421358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 344348c0d076SHong Zhang IS iscol_sub; 34449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 344548c0d076SHong Zhang if (iscol_sub) { 34469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 344848c0d076SHong Zhang } 34491358a193SHong Zhang } 34501358a193SHong Zhang } 34511358a193SHong Zhang } 34523782ecc7SHong Zhang 3453bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34543782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 345628b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34573782ecc7SHong Zhang } else { 345848a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34591358a193SHong Zhang } 34603782ecc7SHong Zhang 34619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34638f69fa7bSHong Zhang 3464b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3467b79d0421SJed Brown } 34683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34694aa3045dSJed Brown } 34704aa3045dSJed Brown 3471feb78a15SHong Zhang /*@C 347211a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3473feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3474feb78a15SHong Zhang 3475d083f849SBarry Smith Collective 3476feb78a15SHong Zhang 3477feb78a15SHong Zhang Input Parameters: 3478feb78a15SHong Zhang + comm - MPI communicator 3479c0c276a7Ssdargavi . M - the global row size 3480c0c276a7Ssdargavi . N - the global column size 3481feb78a15SHong Zhang . A - "diagonal" portion of matrix 3482c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3483*a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter. 3484feb78a15SHong Zhang 3485feb78a15SHong Zhang Output Parameter: 34862ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 348727430b45SBarry Smith 3488feb78a15SHong Zhang Level: advanced 3489feb78a15SHong Zhang 3490feb78a15SHong Zhang Notes: 349111a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 349211a5261eSBarry Smith 3493c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3494feb78a15SHong Zhang 3495*a3156c1cSJunchao Zhang If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update 3496*a3156c1cSJunchao Zhang `B`'s copy on device. We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or 3497*a3156c1cSJunchao Zhang `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray` 3498*a3156c1cSJunchao Zhang yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`. 3499*a3156c1cSJunchao Zhang 35001cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3501feb78a15SHong Zhang @*/ 3502c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3503d71ae5a4SJacob Faibussowitsch { 3504c0c276a7Ssdargavi PetscInt m, n; 35054ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3506feb78a15SHong Zhang 3507feb78a15SHong Zhang PetscFunctionBegin; 35089566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35099566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 351008401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 351158b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3512feb78a15SHong Zhang 3513c0c276a7Ssdargavi PetscCall(MatSetSizes(*mat, m, n, M, N)); 35144ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35154ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35164ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35174ab4d6f4SRichard Tran Mills 351858b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3519feb78a15SHong Zhang 35209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35219566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3522*a3156c1cSJunchao Zhang if (!garray) { 3523*a3156c1cSJunchao Zhang const PetscScalar *ba; 3524*a3156c1cSJunchao Zhang 3525*a3156c1cSJunchao Zhang B->nonzerostate++; 3526*a3156c1cSJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */ 3527*a3156c1cSJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3528*a3156c1cSJunchao Zhang } 3529c0c276a7Ssdargavi PetscCall(MatSetMPIAIJWithSplitSeqAIJ(*mat, A, B, garray)); 3530c0c276a7Ssdargavi PetscFunctionReturn(PETSC_SUCCESS); 3531feb78a15SHong Zhang } 3532feb78a15SHong Zhang 3533c0c276a7Ssdargavi /* 3534c0c276a7Ssdargavi MatSetMPIAIJWithSplitSeqAIJ - Set the diag and offdiag matrices of a `MATMPIAIJ` matrix. 3535c0c276a7Ssdargavi It is similar to `MatCreateMPIAIJWithSplitArrays()`. This routine allows passing in 3536c0c276a7Ssdargavi B with local indices and the correct size, along with the accompanying 3537c0c276a7Ssdargavi garray, hence skipping compactification 3538d5761cdaSHong Zhang 3539c0c276a7Ssdargavi Collective 3540d5761cdaSHong Zhang 3541c0c276a7Ssdargavi Input Parameters: 3542c0c276a7Ssdargavi + mat - the MATMPIAIJ matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 3543c0c276a7Ssdargavi . A - the diag matrix using local col ids 3544c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3545c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3546d5761cdaSHong Zhang 3547c0c276a7Ssdargavi Output Parameter: 3548c0c276a7Ssdargavi . mat - the updated `MATMPIAIJ` matrix 3549feb78a15SHong Zhang 3550c0c276a7Ssdargavi Level: advanced 3551c0c276a7Ssdargavi 3552c0c276a7Ssdargavi Notes: 3553c0c276a7Ssdargavi See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 3554c0c276a7Ssdargavi 3555c0c276a7Ssdargavi `A` and `B` become part of output mat. The user cannot use `A` and `B` anymore. 3556c0c276a7Ssdargavi 3557c0c276a7Ssdargavi .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3558c0c276a7Ssdargavi */ 3559c0c276a7Ssdargavi PETSC_INTERN PetscErrorCode MatSetMPIAIJWithSplitSeqAIJ(Mat mat, Mat A, Mat B, PetscInt *garray) 3560c0c276a7Ssdargavi { 3561c0c276a7Ssdargavi PetscFunctionBegin; 3562c0c276a7Ssdargavi Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 3563c0c276a7Ssdargavi PetscInt m, n, M, N, Am, An, Bm, Bn; 3564c0c276a7Ssdargavi 3565c0c276a7Ssdargavi PetscCall(MatGetSize(mat, &M, &N)); 3566c0c276a7Ssdargavi PetscCall(MatGetLocalSize(mat, &m, &n)); 3567c0c276a7Ssdargavi PetscCall(MatGetLocalSize(A, &Am, &An)); 3568c0c276a7Ssdargavi PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 3569c0c276a7Ssdargavi 3570c0c276a7Ssdargavi PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 3571c0c276a7Ssdargavi PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 3572c0c276a7Ssdargavi PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 3573c0c276a7Ssdargavi mpiaij->A = A; 3574c0c276a7Ssdargavi mpiaij->B = B; 3575c0c276a7Ssdargavi mpiaij->garray = garray; 3576c0c276a7Ssdargavi 3577c0c276a7Ssdargavi mat->preallocated = PETSC_TRUE; 3578c0c276a7Ssdargavi mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3579c0c276a7Ssdargavi 3580c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3581c0c276a7Ssdargavi PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 3582c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3583c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3584c0c276a7Ssdargavi */ 3585c0c276a7Ssdargavi PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 3586c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3587c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3589feb78a15SHong Zhang } 3590feb78a15SHong Zhang 3591ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35924aa3045dSJed Brown 3593d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3594d71ae5a4SJacob Faibussowitsch { 359598b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 359685f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 359798b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35981fd43edeSHong Zhang Mat M, Msub, B = a->B; 359998b658c4SHong Zhang MatScalar *aa; 360000e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3601a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 360298b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 360398b658c4SHong Zhang IS iscol_sub, iscmap; 360498b658c4SHong Zhang const PetscInt *is_idx, *cmap; 360518e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3606a31a438cSHong Zhang MPI_Comm comm; 36077e2c5f70SBarry Smith 3608a0ff6018SBarry Smith PetscFunctionBegin; 36099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3610d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 36119566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 361228b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 36139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3614d5761cdaSHong Zhang 36159566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 361628b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3617d5761cdaSHong Zhang 36189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 361928b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3620d5761cdaSHong Zhang 36219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3622d5761cdaSHong Zhang 3623d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 36243b00a383SHong Zhang PetscBool flg; 36253b00a383SHong Zhang 36269566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 36279566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3628bcae8d28SHong Zhang 36293b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3630366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 36319566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3632366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3633462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3634366a327dSHong Zhang if (allcolumns) { 3635366a327dSHong Zhang iscol_sub = iscol_local; 36369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 36379566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3638366a327dSHong Zhang 36393b00a383SHong Zhang } else { 36401358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3641244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 36429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36449566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36458d2139bdSHong Zhang count = 0; 3646a31a438cSHong Zhang k = 0; 3647a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3648a31a438cSHong Zhang j = is_idx[i]; 3649a31a438cSHong Zhang if (j >= cstart && j < cend) { 3650a31a438cSHong Zhang /* diagonal part of mat */ 36518d2139bdSHong Zhang idx[count] = j; 3652366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36534a3daf6eSHong Zhang } else if (Bn) { 3654a31a438cSHong Zhang /* off-diagonal part of mat */ 3655a31a438cSHong Zhang if (j == garray[k]) { 36568d2139bdSHong Zhang idx[count] = j; 3657a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3658a31a438cSHong Zhang } else if (j > garray[k]) { 3659a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3660a31a438cSHong Zhang if (j == garray[k]) { 3661a31a438cSHong Zhang idx[count] = j; 3662a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36638d2139bdSHong Zhang } 36648d2139bdSHong Zhang } 36658d2139bdSHong Zhang } 36668d2139bdSHong Zhang } 36679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36688d2139bdSHong Zhang 36699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36709566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36719566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3672b6d9b4e0SHong Zhang 36739566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3674a31a438cSHong Zhang } 36758b3fa1f7SHong Zhang 36763b00a383SHong Zhang /* (3) Create sequential Msub */ 36779566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3678d5761cdaSHong Zhang } 36798d2139bdSHong Zhang 36809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 368157508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 368298b658c4SHong Zhang ii = aij->i; 36839566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3684a0ff6018SBarry Smith 3685a0ff6018SBarry Smith /* 3686a0ff6018SBarry Smith m - number of local rows 3687a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3688a0ff6018SBarry Smith rstart - first row in new global matrix generated 3689a0ff6018SBarry Smith */ 36909566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 369198b658c4SHong Zhang 36923b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36933b00a383SHong Zhang /* (4) Create parallel newmat */ 369498b658c4SHong Zhang PetscMPIInt rank, size; 3695bcae8d28SHong Zhang PetscInt csize; 369698b658c4SHong Zhang 36979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 369900e6dbe6SBarry Smith 3700a0ff6018SBarry Smith /* 370100e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 370200e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3703a0ff6018SBarry Smith */ 370400e6dbe6SBarry Smith 370500e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 37069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 37076a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 37089566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3709a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3710e2c4fddaSBarry Smith nlocal = m; 37116a6a5d1dSBarry Smith } else { 3712a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3713ab50ec6bSBarry Smith } 3714ab50ec6bSBarry Smith } else { 37156a6a5d1dSBarry Smith nlocal = csize; 37166a6a5d1dSBarry Smith } 37179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 371800e6dbe6SBarry Smith rstart = rend - nlocal; 3719aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 372000e6dbe6SBarry Smith 372100e6dbe6SBarry Smith /* next, compute all the lengths */ 372298b658c4SHong Zhang jj = aij->j; 37239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 372400e6dbe6SBarry Smith olens = dlens + m; 372500e6dbe6SBarry Smith for (i = 0; i < m; i++) { 372600e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 372700e6dbe6SBarry Smith olen = 0; 372800e6dbe6SBarry Smith dlen = 0; 372900e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 373015b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 373100e6dbe6SBarry Smith else dlen++; 373200e6dbe6SBarry Smith jj++; 373300e6dbe6SBarry Smith } 373400e6dbe6SBarry Smith olens[i] = olen; 373500e6dbe6SBarry Smith dlens[i] = dlen; 373600e6dbe6SBarry Smith } 3737b6d9b4e0SHong Zhang 37389566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 37399566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 374098b658c4SHong Zhang 37419566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 37429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37449566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37459566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37469566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3747d5761cdaSHong Zhang 3748d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3749a0ff6018SBarry Smith M = *newmat; 37509566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 375108401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37529566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3753c48de900SBarry Smith /* 3754c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3755c48de900SBarry Smith rather than the slower MatSetValues(). 3756c48de900SBarry Smith */ 3757c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3758c48de900SBarry Smith M->assembled = PETSC_FALSE; 3759a0ff6018SBarry Smith } 3760548ecf4dSHong Zhang 37613b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37639566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 376498b658c4SHong Zhang 376598b658c4SHong Zhang jj = aij->j; 37669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3767a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3768a0ff6018SBarry Smith row = rstart + i; 376900e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 377015b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37719566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37729371c9d4SSatish Balay jj += nz; 37739371c9d4SSatish Balay aa += nz; 3774a0ff6018SBarry Smith } 37759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3777a0ff6018SBarry Smith 37789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3780fee21e36SBarry Smith 37819566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 378298b658c4SHong Zhang 378398b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3784fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37853b00a383SHong Zhang *newmat = M; 3786f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 378898b658c4SHong Zhang 3789f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 379198b658c4SHong Zhang 3792f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3794bcae8d28SHong Zhang 3795bcae8d28SHong Zhang if (iscol_local) { 3796f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3798bcae8d28SHong Zhang } 379998b658c4SHong Zhang } 38003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3801a0ff6018SBarry Smith } 3802273d9f13SBarry Smith 3803df40acb1SHong Zhang /* 3804df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3805df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3806df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3807df40acb1SHong Zhang 380811a5261eSBarry Smith This requires a sequential iscol with all indices. 3809df40acb1SHong Zhang */ 3810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3811d71ae5a4SJacob Faibussowitsch { 3812df40acb1SHong Zhang PetscMPIInt rank, size; 3813df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3814df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3815df40acb1SHong Zhang Mat M, Mreuse; 381698b658c4SHong Zhang MatScalar *aa, *vwork; 3817df40acb1SHong Zhang MPI_Comm comm; 3818df40acb1SHong Zhang Mat_SeqAIJ *aij; 38190b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3820df40acb1SHong Zhang 3821df40acb1SHong Zhang PetscFunctionBegin; 38229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 38239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 38249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3825df40acb1SHong Zhang 38260b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 38279566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 38289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 38290b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3830462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 38310b27a90eSHong Zhang 3832df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 38339566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 383428b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 38359566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3836df40acb1SHong Zhang } else { 38379566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3838df40acb1SHong Zhang } 3839df40acb1SHong Zhang 3840df40acb1SHong Zhang /* 3841df40acb1SHong Zhang m - number of local rows 3842df40acb1SHong Zhang n - number of columns (same on all processors) 3843df40acb1SHong Zhang rstart - first row in new global matrix generated 3844df40acb1SHong Zhang */ 38459566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38469566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3847df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 384857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3849df40acb1SHong Zhang ii = aij->i; 3850df40acb1SHong Zhang jj = aij->j; 3851df40acb1SHong Zhang 3852df40acb1SHong Zhang /* 3853df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3854df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3855df40acb1SHong Zhang */ 3856df40acb1SHong Zhang 3857df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3858df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38599566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3860df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3861df40acb1SHong Zhang nlocal = m; 3862df40acb1SHong Zhang } else { 3863df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3864df40acb1SHong Zhang } 3865df40acb1SHong Zhang } else { 3866df40acb1SHong Zhang nlocal = csize; 3867df40acb1SHong Zhang } 38689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3869df40acb1SHong Zhang rstart = rend - nlocal; 3870aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3871df40acb1SHong Zhang 3872df40acb1SHong Zhang /* next, compute all the lengths */ 38739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3874df40acb1SHong Zhang olens = dlens + m; 3875df40acb1SHong Zhang for (i = 0; i < m; i++) { 3876df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3877df40acb1SHong Zhang olen = 0; 3878df40acb1SHong Zhang dlen = 0; 3879df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3880df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3881df40acb1SHong Zhang else dlen++; 3882df40acb1SHong Zhang jj++; 3883df40acb1SHong Zhang } 3884df40acb1SHong Zhang olens[i] = olen; 3885df40acb1SHong Zhang dlens[i] = dlen; 3886df40acb1SHong Zhang } 38879566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38909566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38919566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38929566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3893df40acb1SHong Zhang } else { 3894df40acb1SHong Zhang PetscInt ml, nl; 3895df40acb1SHong Zhang 3896df40acb1SHong Zhang M = *newmat; 38979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 389808401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38999566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3900df40acb1SHong Zhang /* 3901df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3902df40acb1SHong Zhang rather than the slower MatSetValues(). 3903df40acb1SHong Zhang */ 3904df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3905df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3906df40acb1SHong Zhang } 39079566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 390857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3909df40acb1SHong Zhang ii = aij->i; 3910df40acb1SHong Zhang jj = aij->j; 39112e5835c6SStefano Zampini 39122e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 39139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3914df40acb1SHong Zhang for (i = 0; i < m; i++) { 3915df40acb1SHong Zhang row = rstart + i; 3916df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 39179371c9d4SSatish Balay cwork = jj; 39188e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 39199371c9d4SSatish Balay vwork = aa; 39208e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 39219566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3922df40acb1SHong Zhang } 39239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3924df40acb1SHong Zhang 39259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 39269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3927df40acb1SHong Zhang *newmat = M; 3928df40acb1SHong Zhang 3929df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3930df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 39319566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 39329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3933df40acb1SHong Zhang } 39343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3935df40acb1SHong Zhang } 3936df40acb1SHong Zhang 3937ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3938d71ae5a4SJacob Faibussowitsch { 39396a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 39409f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3941ccd8e176SBarry Smith const PetscInt *JJ; 3942eeb24464SBarry Smith PetscBool nooffprocentries; 39436a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3944ccd8e176SBarry Smith 3945ccd8e176SBarry Smith PetscFunctionBegin; 39469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3948d0f46423SBarry Smith m = B->rmap->n; 3949d0f46423SBarry Smith cstart = B->cmap->rstart; 3950d0f46423SBarry Smith cend = B->cmap->rend; 3951d0f46423SBarry Smith rstart = B->rmap->rstart; 39529f0612e4SBarry Smith irstart = Ii[0]; 3953899cda47SBarry Smith 39549566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3955ccd8e176SBarry Smith 395676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39578f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3958ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39599f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 396008401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 396108401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 396208401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3963ecc77c7aSBarry Smith } 396476bd3646SJed Brown } 3965ecc77c7aSBarry Smith 39668f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3967b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39689f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3969ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3970ccd8e176SBarry Smith d = 0; 39710daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39720daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3973ccd8e176SBarry Smith } 3974ccd8e176SBarry Smith d_nnz[i] = d; 3975ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3976ccd8e176SBarry Smith } 39779566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39789566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3979ccd8e176SBarry Smith 39808f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3981ccd8e176SBarry Smith ii = i + rstart; 39829f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3983ccd8e176SBarry Smith } 3984eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3985eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3988eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3989ccd8e176SBarry Smith 39906a3d2595SBarry Smith /* count number of entries below block diagonal */ 39916a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39926a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39936a3d2595SBarry Smith Aij->ld = ld; 39946a3d2595SBarry Smith for (i = 0; i < m; i++) { 39956a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39966a3d2595SBarry Smith j = 0; 3997ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39986a3d2595SBarry Smith ld[i] = j; 3999720a2405SPierre Jolivet if (J) J += nnz; 40006a3d2595SBarry Smith } 40016a3d2595SBarry Smith 40029566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 40033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4004ccd8e176SBarry Smith } 4005ccd8e176SBarry Smith 40061eea217eSSatish Balay /*@ 400711a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 4008ccd8e176SBarry Smith (the default parallel PETSc format). 4009ccd8e176SBarry Smith 4010d083f849SBarry Smith Collective 4011ccd8e176SBarry Smith 4012ccd8e176SBarry Smith Input Parameters: 4013a1661176SMatthew Knepley + B - the matrix 4014d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 4015d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 4016ccd8e176SBarry Smith - v - optional values in the matrix 4017ccd8e176SBarry Smith 4018ccd8e176SBarry Smith Level: developer 4019ccd8e176SBarry Smith 402012251496SSatish Balay Notes: 40212ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 40222ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 402311a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 402412251496SSatish Balay 40252ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 402612251496SSatish Balay 4027a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 4028a4bd8bc0SBarry Smith 4029a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 4030a4bd8bc0SBarry Smith 4031a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 4032a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4033a4bd8bc0SBarry Smith 403412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 403512251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4036c5e4d11fSDmitry Karpeev as shown 403727430b45SBarry Smith .vb 403827430b45SBarry Smith 1 0 0 403927430b45SBarry Smith 2 0 3 P0 404027430b45SBarry Smith ------- 404127430b45SBarry Smith 4 5 6 P1 404227430b45SBarry Smith 404327430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 404427430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 404527430b45SBarry Smith j = {0,0,2} [size = 3] 404627430b45SBarry Smith v = {1,2,3} [size = 3] 404727430b45SBarry Smith 404827430b45SBarry Smith Process1 [P1] rows_owned=[2] 404927430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 405027430b45SBarry Smith j = {0,1,2} [size = 3] 405127430b45SBarry Smith v = {4,5,6} [size = 3] 405227430b45SBarry Smith .ve 405312251496SSatish Balay 4054fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4055a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4056ccd8e176SBarry Smith @*/ 4057d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4058d71ae5a4SJacob Faibussowitsch { 4059ccd8e176SBarry Smith PetscFunctionBegin; 4060cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4062ccd8e176SBarry Smith } 4063ccd8e176SBarry Smith 40645d83a8b1SBarry Smith /*@ 406511a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4066273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4067273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 406820f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4069273d9f13SBarry Smith 4070d083f849SBarry Smith Collective 4071273d9f13SBarry Smith 4072273d9f13SBarry Smith Input Parameters: 40731c4f3114SJed Brown + B - the matrix 4074273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4075273d9f13SBarry Smith (same value is used for all local rows) 4076273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4077273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40782ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4079273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40803287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40813287b5eaSJed Brown the diagonal entry even if it is zero. 4082273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4083273d9f13SBarry Smith submatrix (same value is used for all local rows). 4084273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4085273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40862ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4087273d9f13SBarry Smith structure. The size of this array is equal to the number 4088273d9f13SBarry Smith of local rows, i.e 'm'. 4089273d9f13SBarry Smith 40902920cce0SJacob Faibussowitsch Example Usage: 409127430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 409227430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 409327430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 409427430b45SBarry Smith as follows 409527430b45SBarry Smith 409627430b45SBarry Smith .vb 409727430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 409827430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 409927430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 410027430b45SBarry Smith ------------------------------------- 410127430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 410227430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 410327430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 410427430b45SBarry Smith ------------------------------------- 410527430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 410627430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 410727430b45SBarry Smith .ve 410827430b45SBarry Smith 410927430b45SBarry Smith This can be represented as a collection of submatrices as 411027430b45SBarry Smith .vb 411127430b45SBarry Smith A B C 411227430b45SBarry Smith D E F 411327430b45SBarry Smith G H I 411427430b45SBarry Smith .ve 411527430b45SBarry Smith 411627430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 411727430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 411827430b45SBarry Smith 411927430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 412027430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 412127430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 412227430b45SBarry Smith 412327430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 412427430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 412527430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 412627430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 412727430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 41285163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 412927430b45SBarry Smith 413020f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 41315163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 41325163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 41335163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 41345163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 413520f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 413627430b45SBarry Smith .vb 413727430b45SBarry Smith proc0 dnz = 2, o_nz = 2 413827430b45SBarry Smith proc1 dnz = 3, o_nz = 2 413927430b45SBarry Smith proc2 dnz = 1, o_nz = 4 414027430b45SBarry Smith .ve 414120f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 414227430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 414327430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 414427430b45SBarry Smith 34 values. 414527430b45SBarry Smith 414620f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 414727430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 414820f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 414927430b45SBarry Smith .vb 415027430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 415127430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 415227430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 415327430b45SBarry Smith .ve 415427430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 415527430b45SBarry Smith hence pre-allocation is perfect. 415627430b45SBarry Smith 415727430b45SBarry Smith Level: intermediate 415827430b45SBarry Smith 415927430b45SBarry Smith Notes: 416049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 416149a6f317SBarry Smith 416227430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41630598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4164651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4165273d9f13SBarry Smith 4166273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4167273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4168273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4169273d9f13SBarry Smith 4170273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4171a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4172a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4173a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4174a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4175a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4176a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4177a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4178a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4179273d9f13SBarry Smith 41802ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4181273d9f13SBarry Smith 418227430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4183aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 418427430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4185aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4186aa95bbe8SBarry Smith 41871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4188a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4189273d9f13SBarry Smith @*/ 4190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4191d71ae5a4SJacob Faibussowitsch { 4192273d9f13SBarry Smith PetscFunctionBegin; 41936ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41946ba663aaSJed Brown PetscValidType(B, 1); 4195cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4197273d9f13SBarry Smith } 4198273d9f13SBarry Smith 419958d36128SBarry Smith /*@ 420011a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 42018f8f2f0dSBarry Smith CSR format for the local rows. 42022fb0ec9aSBarry Smith 4203d083f849SBarry Smith Collective 42042fb0ec9aSBarry Smith 42052fb0ec9aSBarry Smith Input Parameters: 42062fb0ec9aSBarry Smith + comm - MPI communicator 420711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42082fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4209d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4210d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4211d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4212d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 42135693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 42145693b835SJunchao Zhang . j - global column indices 4215f1f2ae84SBarry Smith - a - optional matrix values 42162fb0ec9aSBarry Smith 42172fb0ec9aSBarry Smith Output Parameter: 42182fb0ec9aSBarry Smith . mat - the matrix 421903bfb495SBarry Smith 42202fb0ec9aSBarry Smith Level: intermediate 42212fb0ec9aSBarry Smith 42222fb0ec9aSBarry Smith Notes: 42232ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4224d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4225d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 42262fb0ec9aSBarry Smith 42272ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 422812251496SSatish Balay 42295693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4230a4bd8bc0SBarry Smith 42315693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4232a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4233a4bd8bc0SBarry Smith 423412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4235d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4236c5e4d11fSDmitry Karpeev as shown 42372ef1f0ffSBarry Smith .vb 42382ef1f0ffSBarry Smith 1 0 0 42392ef1f0ffSBarry Smith 2 0 3 P0 42402ef1f0ffSBarry Smith ------- 42412ef1f0ffSBarry Smith 4 5 6 P1 42428f8f2f0dSBarry Smith 42432ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42442ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42452ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42462ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42472fb0ec9aSBarry Smith 42482ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42492ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42502ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42512ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42522ef1f0ffSBarry Smith .ve 42532ef1f0ffSBarry Smith 4254d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42555693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42562fb0ec9aSBarry Smith @*/ 4257d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4258d71ae5a4SJacob Faibussowitsch { 42592fb0ec9aSBarry Smith PetscFunctionBegin; 426008401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42629566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42649566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42659566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42669566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42682fb0ec9aSBarry Smith } 42692fb0ec9aSBarry Smith 42708f8f2f0dSBarry Smith /*@ 427111a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42722ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42732ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42746a3d2595SBarry Smith 42756a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42768f8f2f0dSBarry Smith 42778f8f2f0dSBarry Smith Collective 42788f8f2f0dSBarry Smith 42798f8f2f0dSBarry Smith Input Parameters: 42808f8f2f0dSBarry Smith + mat - the matrix 428111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42828f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 428311a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42848f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 428511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 428611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42878f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42888f8f2f0dSBarry Smith . J - column indices 42898f8f2f0dSBarry Smith - v - matrix values 42908f8f2f0dSBarry Smith 42912ef1f0ffSBarry Smith Level: deprecated 42928f8f2f0dSBarry Smith 42931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4294a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42958f8f2f0dSBarry Smith @*/ 4296d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4297d71ae5a4SJacob Faibussowitsch { 42986a3d2595SBarry Smith PetscInt nnz, i; 42998f8f2f0dSBarry Smith PetscBool nooffprocentries; 43008f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4301fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4302fff043a9SJunchao Zhang PetscScalar *ad, *ao; 43038f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 43046a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 43056a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43068f8f2f0dSBarry Smith 43078f8f2f0dSBarry Smith PetscFunctionBegin; 4308aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 430908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 431008401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 431108401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 43128f8f2f0dSBarry Smith 43139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43158f8f2f0dSBarry Smith 43168f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 43174c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 43184c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 43194c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 43204c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 43214c17f1ccSBarry Smith } 43224c17f1ccSBarry Smith } 43238f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 43248f8f2f0dSBarry Smith Iii = Ii[i]; 43258f8f2f0dSBarry Smith ldi = ld[i]; 43268f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 43279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 43289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43299566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43308f8f2f0dSBarry Smith ad += md; 43318f8f2f0dSBarry Smith ao += nnz - md; 43328f8f2f0dSBarry Smith } 43338f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 43348f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 43359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43379566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43389566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43399566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43428f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43448f8f2f0dSBarry Smith } 43458f8f2f0dSBarry Smith 43466a3d2595SBarry Smith /*@ 434711a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43486a3d2595SBarry Smith 43496a3d2595SBarry Smith Collective 43506a3d2595SBarry Smith 43516a3d2595SBarry Smith Input Parameters: 43526a3d2595SBarry Smith + mat - the matrix 43536a3d2595SBarry Smith - v - matrix values, stored by row 43546a3d2595SBarry Smith 43556a3d2595SBarry Smith Level: intermediate 43566a3d2595SBarry Smith 4357a4bd8bc0SBarry Smith Notes: 43586a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43596a3d2595SBarry Smith 4360a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4361a4bd8bc0SBarry Smith 43621cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4363a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43646a3d2595SBarry Smith @*/ 4365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4366d71ae5a4SJacob Faibussowitsch { 43676a3d2595SBarry Smith PetscInt nnz, i, m; 43686a3d2595SBarry Smith PetscBool nooffprocentries; 43696a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43706a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43716a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43726a3d2595SBarry Smith PetscScalar *ad, *ao; 43736a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43746a3d2595SBarry Smith PetscInt ldi, Iii, md; 43756a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43766a3d2595SBarry Smith 43776a3d2595SBarry Smith PetscFunctionBegin; 43786a3d2595SBarry Smith m = mat->rmap->n; 43796a3d2595SBarry Smith 43806a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43816a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43826a3d2595SBarry Smith Iii = 0; 43836a3d2595SBarry Smith for (i = 0; i < m; i++) { 43846a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43856a3d2595SBarry Smith ldi = ld[i]; 43866a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43876a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43886a3d2595SBarry Smith ad += md; 4389810441c8SPierre Jolivet if (ao) { 4390810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4391810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43926a3d2595SBarry Smith ao += nnz - md; 4393810441c8SPierre Jolivet } 43946a3d2595SBarry Smith Iii += nnz; 43956a3d2595SBarry Smith } 43966a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43976a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43986a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43996a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 44006a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 44016a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 44026a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 44036a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 44046a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 44056a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 44063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44076a3d2595SBarry Smith } 44086a3d2595SBarry Smith 44095d83a8b1SBarry Smith /*@ 441011a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4411273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4412273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 44132ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4414273d9f13SBarry Smith 4415d083f849SBarry Smith Collective 4416273d9f13SBarry Smith 4417273d9f13SBarry Smith Input Parameters: 4418273d9f13SBarry Smith + comm - MPI communicator 441911a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4420273d9f13SBarry Smith This value should be the same as the local size used in creating the 4421273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4422273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 442345f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4424273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 442511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 442611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4427273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4428273d9f13SBarry Smith (same value is used for all local rows) 4429273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4430273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 44312ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4432273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4433273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4434273d9f13SBarry Smith submatrix (same value is used for all local rows). 4435273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4436273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 44372ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4438273d9f13SBarry Smith structure. The size of this array is equal to the number 4439273d9f13SBarry Smith of local rows, i.e 'm'. 4440273d9f13SBarry Smith 4441273d9f13SBarry Smith Output Parameter: 4442273d9f13SBarry Smith . A - the matrix 4443273d9f13SBarry Smith 444427430b45SBarry Smith Options Database Keys: 444527430b45SBarry Smith + -mat_no_inode - Do not use inodes 444627430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 444727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4448727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4449727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 445027430b45SBarry Smith 44512ef1f0ffSBarry Smith Level: intermediate 44522ef1f0ffSBarry Smith 445327430b45SBarry Smith Notes: 445477433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4455f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 445611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4457175b88e8SBarry Smith 445849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 445949a6f317SBarry Smith 44602ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44612ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4462273d9f13SBarry Smith storage requirements for this matrix. 4463273d9f13SBarry Smith 446411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4465273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4466273d9f13SBarry Smith that argument. 4467273d9f13SBarry Smith 4468727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4469727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4470727bdf9bSBarry Smith 4471273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4472273d9f13SBarry Smith (possibly both). 4473273d9f13SBarry Smith 447433a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4475727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4476727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4477727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 447833a7c187SSatish Balay values corresponding to [m x N] submatrix. 4479273d9f13SBarry Smith 448033a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 448133a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4482df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 448333a7c187SSatish Balay 448433a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 448533a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 448633a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 448733a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 448833a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 448933a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44900b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44910b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 449233a7c187SSatish Balay 449333a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 449433a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 449533a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 449633a7c187SSatish Balay local matrix (a rectangular submatrix). 4497273d9f13SBarry Smith 44982ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4499273d9f13SBarry Smith 450097d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 45012ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4502da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4503da57b5cdSKarl Rupp .vb 45042ef1f0ffSBarry Smith MatCreate(..., &A); 45052ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 45062ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 45072ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4508da57b5cdSKarl Rupp .ve 450997d05335SKris Buschelman 4510273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4511273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4512273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4513273d9f13SBarry Smith 45142920cce0SJacob Faibussowitsch Example Usage: 4515273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4516273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4517273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4518efc377ccSKarl Rupp as follows 4519273d9f13SBarry Smith 4520273d9f13SBarry Smith .vb 4521273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4522273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4523273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4524273d9f13SBarry Smith ------------------------------------- 4525273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4526273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4527273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4528273d9f13SBarry Smith ------------------------------------- 4529273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4530273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4531273d9f13SBarry Smith .ve 4532273d9f13SBarry Smith 4533da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4534273d9f13SBarry Smith 4535273d9f13SBarry Smith .vb 4536273d9f13SBarry Smith A B C 4537273d9f13SBarry Smith D E F 4538273d9f13SBarry Smith G H I 4539273d9f13SBarry Smith .ve 4540273d9f13SBarry Smith 4541273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4542273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4543273d9f13SBarry Smith 4544273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4545273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4546273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4547273d9f13SBarry Smith 4548273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4549273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4550273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4551273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 455227430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45535163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4554273d9f13SBarry Smith 45552ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45565163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45575163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45585163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45595163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45602ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4561273d9f13SBarry Smith .vb 456227430b45SBarry Smith proc0 dnz = 2, o_nz = 2 456327430b45SBarry Smith proc1 dnz = 3, o_nz = 2 456427430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4565273d9f13SBarry Smith .ve 45662ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4567273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4568273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4569273d9f13SBarry Smith 34 values. 4570273d9f13SBarry Smith 45712ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4572a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4573da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4574273d9f13SBarry Smith .vb 457527430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 457627430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 457727430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4578273d9f13SBarry Smith .ve 4579273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4580273d9f13SBarry Smith hence pre-allocation is perfect. 4581273d9f13SBarry Smith 45821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4583727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4584727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4585273d9f13SBarry Smith @*/ 4586d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4587d71ae5a4SJacob Faibussowitsch { 4588b1d57f15SBarry Smith PetscMPIInt size; 4589273d9f13SBarry Smith 4590273d9f13SBarry Smith PetscFunctionBegin; 45919566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4594273d9f13SBarry Smith if (size > 1) { 45959566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4597273d9f13SBarry Smith } else { 45989566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4600273d9f13SBarry Smith } 46013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4602273d9f13SBarry Smith } 4603195d93cdSBarry Smith 4604127ca0efSMatthew Knepley /*@C 46050ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4606127ca0efSMatthew Knepley 46072ef1f0ffSBarry Smith Not Collective 4608127ca0efSMatthew Knepley 4609127ca0efSMatthew Knepley Input Parameter: 461011a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4611127ca0efSMatthew Knepley 4612127ca0efSMatthew Knepley Output Parameters: 461311a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 461411a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46152ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4616127ca0efSMatthew Knepley 46170ab4885dSBarry Smith Level: intermediate 46180ab4885dSBarry Smith 461911a5261eSBarry Smith Note: 46202ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46212ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46222ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4623127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4624127ca0efSMatthew Knepley 4625ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4626127ca0efSMatthew Knepley @*/ 4627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4628d71ae5a4SJacob Faibussowitsch { 4629195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 463004cf37c7SBarry Smith PetscBool flg; 4631b1d57f15SBarry Smith 4632195d93cdSBarry Smith PetscFunctionBegin; 46339566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463428b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463521e72a00SBarry Smith if (Ad) *Ad = a->A; 463621e72a00SBarry Smith if (Ao) *Ao = a->B; 463721e72a00SBarry Smith if (colmap) *colmap = a->garray; 46383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4639195d93cdSBarry Smith } 4640a2243be0SBarry Smith 4641d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4642d71ae5a4SJacob Faibussowitsch { 4643110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46449b8102ccSHong Zhang PetscInt *indx; 4645110bb6e1SHong Zhang PetscScalar *values; 4646421ddf4dSJunchao Zhang MatType rootType; 46479b8102ccSHong Zhang 46489b8102ccSHong Zhang PetscFunctionBegin; 46499566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4650110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4651110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4652110bb6e1SHong Zhang 465348a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4654a22543b6SHong Zhang /* Check sum(n) = N */ 4655462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465608401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4657a22543b6SHong Zhang 46589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46599b8102ccSHong Zhang rstart -= m; 46609b8102ccSHong Zhang 4661d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46629b8102ccSHong Zhang for (i = 0; i < m; i++) { 46639566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46649566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46659566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46669b8102ccSHong Zhang } 46679b8102ccSHong Zhang 46689566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46709566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46719566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46729566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46739566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46759566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4676d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46779566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46789b8102ccSHong Zhang } 46799b8102ccSHong Zhang 4680110bb6e1SHong Zhang /* numeric phase */ 46819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46829b8102ccSHong Zhang for (i = 0; i < m; i++) { 46839566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46849b8102ccSHong Zhang Ii = i + rstart; 46859566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46869566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46879b8102ccSHong Zhang } 46889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4691c5d6d63eSBarry Smith } 4692c5d6d63eSBarry Smith 469349abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4694d71ae5a4SJacob Faibussowitsch { 469549abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 469651a7d1a8SHong Zhang 469751a7d1a8SHong Zhang PetscFunctionBegin; 46983ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47109566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47119566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47129566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471451a7d1a8SHong Zhang } 471551a7d1a8SHong Zhang 4716c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4717c6db04a5SJed Brown #include <petscbt.h> 47184ebed01fSBarry Smith 4719d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4720d71ae5a4SJacob Faibussowitsch { 4721ce94432eSBarry Smith MPI_Comm comm; 472255d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4723b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47246497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47256497c311SBarry Smith PetscMPIInt proc, k; 4726b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47276497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4728b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472955d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 473055d1abb9SHong Zhang MPI_Status *status; 4731fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4732dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473355d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4734776b82aeSLisandro Dalcin PetscContainer container; 473555d1abb9SHong Zhang 473655d1abb9SHong Zhang PetscFunctionBegin; 47379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47389566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47393c2c1871SHong Zhang 47409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474255d1abb9SHong Zhang 47439566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474428b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47459566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4747fff043a9SJunchao Zhang aa = a_a; 4748bf0cc555SLisandro Dalcin 474955d1abb9SHong Zhang bi = merge->bi; 475055d1abb9SHong Zhang bj = merge->bj; 475155d1abb9SHong Zhang buf_ri = merge->buf_ri; 475255d1abb9SHong Zhang buf_rj = merge->buf_rj; 475355d1abb9SHong Zhang 47549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47557a2fc3feSBarry Smith owners = merge->rowmap->range; 475655d1abb9SHong Zhang len_s = merge->len_s; 475755d1abb9SHong Zhang 475855d1abb9SHong Zhang /* send and recv matrix values */ 47599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47609566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 476155d1abb9SHong Zhang 47629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476355d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476455d1abb9SHong Zhang if (!len_s[proc]) continue; 476555d1abb9SHong Zhang i = owners[proc]; 47666497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476755d1abb9SHong Zhang k++; 476855d1abb9SHong Zhang } 476955d1abb9SHong Zhang 47709566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47719566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47729566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477355d1abb9SHong Zhang 47749566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47759566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477655d1abb9SHong Zhang 477755d1abb9SHong Zhang /* insert mat values of mpimat */ 47789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47799566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 478055d1abb9SHong Zhang 478155d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478255d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4783f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 478455d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4785a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478655d1abb9SHong Zhang } 478755d1abb9SHong Zhang 478855d1abb9SHong Zhang /* set values of ba */ 47897a2fc3feSBarry Smith m = merge->rowmap->n; 479055d1abb9SHong Zhang for (i = 0; i < m; i++) { 479155d1abb9SHong Zhang arow = owners[rank] + i; 479255d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479355d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47949566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479555d1abb9SHong Zhang 479655d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479755d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479855d1abb9SHong Zhang aj = a->j + ai[arow]; 4799fff043a9SJunchao Zhang aa = a_a + ai[arow]; 480055d1abb9SHong Zhang nextaj = 0; 480155d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480255d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480355d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480455d1abb9SHong Zhang } 480555d1abb9SHong Zhang } 480655d1abb9SHong Zhang 480755d1abb9SHong Zhang /* add received vals into ba */ 480855d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480955d1abb9SHong Zhang /* i-th row */ 481055d1abb9SHong Zhang if (i == *nextrow[k]) { 481155d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4812f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4813f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 481455d1abb9SHong Zhang nextaj = 0; 481555d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481655d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481755d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481855d1abb9SHong Zhang } 481955d1abb9SHong Zhang } 48209371c9d4SSatish Balay nextrow[k]++; 48219371c9d4SSatish Balay nextai[k]++; 482255d1abb9SHong Zhang } 482355d1abb9SHong Zhang } 48249566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482555d1abb9SHong Zhang } 48269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482955d1abb9SHong Zhang 48309566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48319566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48329566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48339566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483655d1abb9SHong Zhang } 483738f152feSBarry Smith 4838d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4839d71ae5a4SJacob Faibussowitsch { 484055a3bba9SHong Zhang Mat B_mpi; 4841c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4842b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4843b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4844d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48456497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4846c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4847b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484855d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484958cb9c82SHong Zhang MPI_Status *status; 48500298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4851be0fcf8dSHong Zhang PetscBT lnkbt; 485251a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4853776b82aeSLisandro Dalcin PetscContainer container; 485402c68681SHong Zhang 4855e5f2cdd8SHong Zhang PetscFunctionBegin; 48569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48573c2c1871SHong Zhang 485838f152feSBarry Smith /* make sure it is a PETSc comm */ 48599566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486255d1abb9SHong Zhang 48639566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4865e5f2cdd8SHong Zhang 48666abd8857SHong Zhang /* determine row ownership */ 48679566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48719566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487455d1abb9SHong Zhang 48757a2fc3feSBarry Smith m = merge->rowmap->n; 48767a2fc3feSBarry Smith owners = merge->rowmap->range; 48776abd8857SHong Zhang 48786abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48793e06a4e6SHong Zhang len_s = merge->len_s; 488051a7d1a8SHong Zhang 48812257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4882c2234fe3SHong Zhang merge->nsend = 0; 48836497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48842257cef7SHong Zhang len_si[proc] = 0; 48853e06a4e6SHong Zhang if (proc == rank) { 48866abd8857SHong Zhang len_s[proc] = 0; 48873e06a4e6SHong Zhang } else { 48886497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48896497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48903e06a4e6SHong Zhang } 48913e06a4e6SHong Zhang if (len_s[proc]) { 4892c2234fe3SHong Zhang merge->nsend++; 48932257cef7SHong Zhang nrows = 0; 48942257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48952257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48962257cef7SHong Zhang } 48976497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48982257cef7SHong Zhang len += len_si[proc]; 4899409913e3SHong Zhang } 490058cb9c82SHong Zhang } 4901409913e3SHong Zhang 49022257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49039566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49049566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4905671beff6SHong Zhang 49063e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49079566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49089566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490902c68681SHong Zhang 49103e06a4e6SHong Zhang /* post the Isend of j-structure */ 49119566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49123e06a4e6SHong Zhang 49136497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4914409913e3SHong Zhang if (!len_s[proc]) continue; 491502c68681SHong Zhang i = owners[proc]; 49166497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491751a7d1a8SHong Zhang k++; 491851a7d1a8SHong Zhang } 491951a7d1a8SHong Zhang 49203e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49219566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49229566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492302c68681SHong Zhang 492402c68681SHong Zhang /* send and recv i-structure */ 49259566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49269566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492702c68681SHong Zhang 49289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49293e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49306497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 493102c68681SHong Zhang if (!len_s[proc]) continue; 49323e06a4e6SHong Zhang /* form outgoing message for i-structure: 49333e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49343e06a4e6SHong Zhang [1:nrows]: row index (global) 49353e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49363e06a4e6SHong Zhang */ 49372257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49383e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49393e06a4e6SHong Zhang buf_si[0] = nrows; 49403e06a4e6SHong Zhang buf_si_i[0] = 0; 49413e06a4e6SHong Zhang nrows = 0; 49423e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49433e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49443e06a4e6SHong Zhang if (anzi) { 49453e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49463e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49473e06a4e6SHong Zhang nrows++; 49483e06a4e6SHong Zhang } 49493e06a4e6SHong Zhang } 49506497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 495102c68681SHong Zhang k++; 49522257cef7SHong Zhang buf_si += len_si[proc]; 495302c68681SHong Zhang } 49542257cef7SHong Zhang 49559566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49569566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495702c68681SHong Zhang 49589566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495948a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49603e06a4e6SHong Zhang 49619566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49659566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49669566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49679566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496858cb9c82SHong Zhang 4969bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 497058cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497258cb9c82SHong Zhang bi[0] = 0; 497358cb9c82SHong Zhang 4974be0fcf8dSHong Zhang /* create and initialize a linked list */ 4975be0fcf8dSHong Zhang nlnk = N + 1; 49769566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497758cb9c82SHong Zhang 4978bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4979bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49809566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49812205254eSKarl Rupp 498258cb9c82SHong Zhang current_space = free_space; 498358cb9c82SHong Zhang 4984bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49859566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49861d79065fSBarry Smith 49873e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49882257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49893e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49903e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4991a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49923e06a4e6SHong Zhang } 49932257cef7SHong Zhang 4994d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4995bcc1bcd5SHong Zhang len = 0; 499658cb9c82SHong Zhang for (i = 0; i < m; i++) { 499758cb9c82SHong Zhang bnzi = 0; 499858cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499958cb9c82SHong Zhang arow = owners[rank] + i; 500058cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 500158cb9c82SHong Zhang aj = a->j + ai[arow]; 50029566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500358cb9c82SHong Zhang bnzi += nlnk; 500458cb9c82SHong Zhang /* add received col data into lnk */ 500551a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500655d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50073e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50083e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50099566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50103e06a4e6SHong Zhang bnzi += nlnk; 50119371c9d4SSatish Balay nextrow[k]++; 50129371c9d4SSatish Balay nextai[k]++; 50133e06a4e6SHong Zhang } 501458cb9c82SHong Zhang } 5015bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501658cb9c82SHong Zhang 501758cb9c82SHong Zhang /* if free space is not available, make more free space */ 501848a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501958cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50209566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50219566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5022bcc1bcd5SHong Zhang 502358cb9c82SHong Zhang current_space->array += bnzi; 502458cb9c82SHong Zhang current_space->local_used += bnzi; 502558cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502658cb9c82SHong Zhang 502758cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502858cb9c82SHong Zhang } 5029bcc1bcd5SHong Zhang 50309566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5031bcc1bcd5SHong Zhang 50329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50339566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50349566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5035409913e3SHong Zhang 5036bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50379566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50389566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503954b84b50SHong Zhang if (n == PETSC_DECIDE) { 50409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 504154b84b50SHong Zhang } else { 50429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504354b84b50SHong Zhang } 50449566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50459566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50469566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5047d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50489566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504958cb9c82SHong Zhang 505090431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50516abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5052affca5deSHong Zhang merge->bi = bi; 5053affca5deSHong Zhang merge->bj = bj; 505402c68681SHong Zhang merge->buf_ri = buf_ri; 505502c68681SHong Zhang merge->buf_rj = buf_rj; 50560298fd71SBarry Smith merge->coi = NULL; 50570298fd71SBarry Smith merge->coj = NULL; 50580298fd71SBarry Smith merge->owners_co = NULL; 5059affca5deSHong Zhang 50609566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5061bf0cc555SLisandro Dalcin 5062affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50639566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50649566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 506549abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50669566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50679566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5068affca5deSHong Zhang *mpimat = B_mpi; 506938f152feSBarry Smith 50709566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5072e5f2cdd8SHong Zhang } 507325616d81SHong Zhang 5074cc4c1da9SBarry Smith /*@ 507511a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5076d4036a1aSHong Zhang matrices from each processor 5077d4036a1aSHong Zhang 5078d083f849SBarry Smith Collective 5079d4036a1aSHong Zhang 5080d4036a1aSHong Zhang Input Parameters: 5081d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5082d4036a1aSHong Zhang . seqmat - the input sequential matrices 508311a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508411a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5086d4036a1aSHong Zhang 5087d4036a1aSHong Zhang Output Parameter: 5088d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5089d4036a1aSHong Zhang 5090d4036a1aSHong Zhang Level: advanced 5091d4036a1aSHong Zhang 509211a5261eSBarry Smith Note: 5093d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5094d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5095b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50962ef1f0ffSBarry Smith 50971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5098d4036a1aSHong Zhang @*/ 5099d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5100d71ae5a4SJacob Faibussowitsch { 51017e63b356SHong Zhang PetscMPIInt size; 510255d1abb9SHong Zhang 510355d1abb9SHong Zhang PetscFunctionBegin; 51049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51057e63b356SHong Zhang if (size == 1) { 51069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51077e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51089566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51097e63b356SHong Zhang } else { 51109566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51117e63b356SHong Zhang } 51129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51147e63b356SHong Zhang } 51159566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511648a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51179566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 512055d1abb9SHong Zhang } 51214ebed01fSBarry Smith 5122bc08b0f1SBarry Smith /*@ 51232920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51248a9c020eSBarry Smith 51258a9c020eSBarry Smith Not Collective 51268a9c020eSBarry Smith 51272fe279fdSBarry Smith Input Parameter: 512820f4b53cSBarry Smith . A - the matrix 51298a9c020eSBarry Smith 51308a9c020eSBarry Smith Output Parameter: 51318a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51328a9c020eSBarry Smith 51338a9c020eSBarry Smith Level: developer 51348a9c020eSBarry Smith 51358a9c020eSBarry Smith Notes: 51362920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51372920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51382920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51392920cce0SJacob Faibussowitsch 514011a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51418a9c020eSBarry Smith 51422920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51432920cce0SJacob Faibussowitsch 514411a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51458a9c020eSBarry Smith 51461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51478a9c020eSBarry Smith @*/ 5148d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5149d71ae5a4SJacob Faibussowitsch { 51508a9c020eSBarry Smith PetscBool mpi; 51518a9c020eSBarry Smith 51528a9c020eSBarry Smith PetscFunctionBegin; 51538a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51548a9c020eSBarry Smith if (mpi) { 51558a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51568a9c020eSBarry Smith } else { 51578a9c020eSBarry Smith *A_loc = A; 51588a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51598a9c020eSBarry Smith } 51603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51618a9c020eSBarry Smith } 51628a9c020eSBarry Smith 51638a9c020eSBarry Smith /*@ 51642920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516525616d81SHong Zhang 516632fba14fSHong Zhang Not Collective 516725616d81SHong Zhang 516825616d81SHong Zhang Input Parameters: 516925616d81SHong Zhang + A - the matrix 517011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 517125616d81SHong Zhang 517225616d81SHong Zhang Output Parameter: 517325616d81SHong Zhang . A_loc - the local sequential matrix generated 517425616d81SHong Zhang 517525616d81SHong Zhang Level: developer 517625616d81SHong Zhang 517777c65a98SStefano Zampini Notes: 51782920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51792920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51802920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51812920cce0SJacob Faibussowitsch 518211a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51838a9c020eSBarry Smith 51842920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51852920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51862920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51872920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518877c65a98SStefano Zampini 51891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 519025616d81SHong Zhang @*/ 5191d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5192d71ae5a4SJacob Faibussowitsch { 519301b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5194b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5195b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5196ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5197ce496241SStefano Zampini PetscScalar *ca, *cam; 519877c65a98SStefano Zampini PetscMPIInt size; 5199d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52005a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52018661ff28SBarry Smith PetscBool match; 520225616d81SHong Zhang 520325616d81SHong Zhang PetscFunctionBegin; 52049566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520528b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520777c65a98SStefano Zampini if (size == 1) { 520877c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52099566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 521077c65a98SStefano Zampini *A_loc = mpimat->A; 521177c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52129566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521377c65a98SStefano Zampini } 52143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521577c65a98SStefano Zampini } 521670a9ba44SHong Zhang 52179566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5218f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5219f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52209371c9d4SSatish Balay ai = a->i; 52219371c9d4SSatish Balay aj = a->j; 52229371c9d4SSatish Balay bi = b->i; 52239371c9d4SSatish Balay bj = b->j; 52249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5226ce496241SStefano Zampini aa = aav; 5227ce496241SStefano Zampini ba = bav; 522801b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5230dea91ad1SHong Zhang ci[0] = 0; 5231ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5234dea91ad1SHong Zhang k = 0; 523501b7ae99SHong Zhang for (i = 0; i < am; i++) { 52365a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52375a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523801b7ae99SHong Zhang /* off-diagonal portion of A */ 52395a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52405a7d977cSHong Zhang col = cmap[*bj]; 52415a7d977cSHong Zhang if (col >= cstart) break; 52429371c9d4SSatish Balay cj[k] = col; 52439371c9d4SSatish Balay bj++; 52445a7d977cSHong Zhang ca[k++] = *ba++; 52455a7d977cSHong Zhang } 52465a7d977cSHong Zhang /* diagonal portion of A */ 52475a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52485a7d977cSHong Zhang cj[k] = cstart + *aj++; 52495a7d977cSHong Zhang ca[k++] = *aa++; 52505a7d977cSHong Zhang } 52515a7d977cSHong Zhang /* off-diagonal portion of A */ 52525a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52535a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52545a7d977cSHong Zhang ca[k++] = *ba++; 52555a7d977cSHong Zhang } 525625616d81SHong Zhang } 5257dea91ad1SHong Zhang /* put together the new matrix */ 52589566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5259dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5260dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5261dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5262e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5263e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5264dea91ad1SHong Zhang mat->nonew = 0; 52655a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52665a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5267fff043a9SJunchao Zhang ci = mat->i; 5268fff043a9SJunchao Zhang cj = mat->j; 52699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52705a7d977cSHong Zhang for (i = 0; i < am; i++) { 52715a7d977cSHong Zhang /* off-diagonal portion of A */ 52725a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52735a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52745a7d977cSHong Zhang col = cmap[*bj]; 52755a7d977cSHong Zhang if (col >= cstart) break; 52769371c9d4SSatish Balay *cam++ = *ba++; 52779371c9d4SSatish Balay bj++; 52785a7d977cSHong Zhang } 52795a7d977cSHong Zhang /* diagonal portion of A */ 5280ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5281a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52825a7d977cSHong Zhang /* off-diagonal portion of A */ 5283f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52849371c9d4SSatish Balay *cam++ = *ba++; 52859371c9d4SSatish Balay bj++; 5286f33d1a9aSHong Zhang } 52875a7d977cSHong Zhang } 52889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52929566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529425616d81SHong Zhang } 529525616d81SHong Zhang 5296ed502f03SStefano Zampini /*@ 529711a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52984cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5299ed502f03SStefano Zampini 5300ed502f03SStefano Zampini Not Collective 5301ed502f03SStefano Zampini 5302ed502f03SStefano Zampini Input Parameters: 5303ed502f03SStefano Zampini + A - the matrix 530411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5305ed502f03SStefano Zampini 5306d8d19677SJose E. Roman Output Parameters: 53072ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5308ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5309ed502f03SStefano Zampini 5310ed502f03SStefano Zampini Level: developer 5311ed502f03SStefano Zampini 531211a5261eSBarry Smith Note: 53132ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53144cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5315ed502f03SStefano Zampini 53161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5317ed502f03SStefano Zampini @*/ 5318d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5319d71ae5a4SJacob Faibussowitsch { 5320ed502f03SStefano Zampini Mat Ao, Ad; 5321ed502f03SStefano Zampini const PetscInt *cmap; 5322ed502f03SStefano Zampini PetscMPIInt size; 5323ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5324ed502f03SStefano Zampini 5325ed502f03SStefano Zampini PetscFunctionBegin; 53269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5328ed502f03SStefano Zampini if (size == 1) { 5329ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53309566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5331ed502f03SStefano Zampini *A_loc = Ad; 5332ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53339566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5334ed502f03SStefano Zampini } 53359566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5337ed502f03SStefano Zampini } 53389566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5340ed502f03SStefano Zampini if (f) { 53419566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5342ed502f03SStefano Zampini } else { 5343ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5344ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5345ed502f03SStefano Zampini Mat_SeqAIJ *c; 5346ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5347ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5348ed502f03SStefano Zampini PetscInt *ci, *cj; 5349ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5350ed502f03SStefano Zampini PetscScalar *ca; 5351ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5352ed502f03SStefano Zampini 53539566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53549566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5357ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5358ed502f03SStefano Zampini PetscInt k; 53599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5362ed502f03SStefano Zampini ci[0] = 0; 5363ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5364ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5365ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5366ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5367ed502f03SStefano Zampini /* diagonal portion of A */ 5368ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5369ed502f03SStefano Zampini cj[k] = *aj++; 5370ed502f03SStefano Zampini ca[k] = *aa++; 5371ed502f03SStefano Zampini } 5372ed502f03SStefano Zampini /* off-diagonal portion of A */ 5373ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5374ed502f03SStefano Zampini cj[k] = dn + *bj++; 5375ed502f03SStefano Zampini ca[k] = *ba++; 5376ed502f03SStefano Zampini } 5377ed502f03SStefano Zampini } 5378ed502f03SStefano Zampini /* put together the new matrix */ 53799566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5380ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5381ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5382ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5383ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5384ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5385ed502f03SStefano Zampini c->nonew = 0; 53869566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5387ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5389ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5390ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5391ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5392ed502f03SStefano Zampini /* diagonal portion of A */ 5393ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5394ed502f03SStefano Zampini /* off-diagonal portion of A */ 5395ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5396ed502f03SStefano Zampini } 53979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5401ed502f03SStefano Zampini if (glob) { 5402ed502f03SStefano Zampini PetscInt cst, *gidx; 5403ed502f03SStefano Zampini 54049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5406ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5407ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54089566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5409ed502f03SStefano Zampini } 5410ed502f03SStefano Zampini } 54119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5413ed502f03SStefano Zampini } 5414ed502f03SStefano Zampini 541532fba14fSHong Zhang /*@C 541611a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541732fba14fSHong Zhang 541832fba14fSHong Zhang Not Collective 541932fba14fSHong Zhang 542032fba14fSHong Zhang Input Parameters: 542132fba14fSHong Zhang + A - the matrix 542211a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542320f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542420f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542532fba14fSHong Zhang 542632fba14fSHong Zhang Output Parameter: 542732fba14fSHong Zhang . A_loc - the local sequential matrix generated 542832fba14fSHong Zhang 542932fba14fSHong Zhang Level: developer 543032fba14fSHong Zhang 54311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543232fba14fSHong Zhang @*/ 5433d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5434d71ae5a4SJacob Faibussowitsch { 543532fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543632fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543732fba14fSHong Zhang IS isrowa, iscola; 543832fba14fSHong Zhang Mat *aloc; 54394a2b5492SBarry Smith PetscBool match; 544032fba14fSHong Zhang 544132fba14fSHong Zhang PetscFunctionBegin; 54429566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544328b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544532fba14fSHong Zhang if (!row) { 54469371c9d4SSatish Balay start = A->rmap->rstart; 54479371c9d4SSatish Balay end = A->rmap->rend; 54489566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544932fba14fSHong Zhang } else { 545032fba14fSHong Zhang isrowa = *row; 545132fba14fSHong Zhang } 545232fba14fSHong Zhang if (!col) { 5453d0f46423SBarry Smith start = A->cmap->rstart; 545432fba14fSHong Zhang cmap = a->garray; 5455d0f46423SBarry Smith nzA = a->A->cmap->n; 5456d0f46423SBarry Smith nzB = a->B->cmap->n; 54579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545832fba14fSHong Zhang ncols = 0; 545932fba14fSHong Zhang for (i = 0; i < nzB; i++) { 546032fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 546132fba14fSHong Zhang else break; 546232fba14fSHong Zhang } 546332fba14fSHong Zhang imark = i; 546432fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546532fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546732fba14fSHong Zhang } else { 546832fba14fSHong Zhang iscola = *col; 546932fba14fSHong Zhang } 547032fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547232fba14fSHong Zhang aloc[0] = *A_loc; 547332fba14fSHong Zhang } 54749566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5475109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54769566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5477109e0772SStefano Zampini } 547832fba14fSHong Zhang *A_loc = aloc[0]; 54799566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 548048a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 548148a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548432fba14fSHong Zhang } 548532fba14fSHong Zhang 54865c65b9ecSFande Kong /* 54875c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54885c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54895c65b9ecSFande Kong * on a global size. 54905c65b9ecSFande Kong * */ 5491ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5492d71ae5a4SJacob Faibussowitsch { 54935c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5494f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5495131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5496131c27b5Sprj- PetscMPIInt owner; 54975c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54985c65b9ecSFande Kong const PetscInt *lrowindices; 54995c65b9ecSFande Kong PetscSF sf, osf; 55005c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55015c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55025c65b9ecSFande Kong MPI_Comm comm; 55035c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5504fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55055c65b9ecSFande Kong 55065c65b9ecSFande Kong PetscFunctionBegin; 55079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55085c65b9ecSFande Kong /* plocalsize is the number of roots 55095c65b9ecSFande Kong * nrows is the number of leaves 55105c65b9ecSFande Kong * */ 55119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55139566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55155c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55165c65b9ecSFande Kong /* Find a remote index and an owner for a row 55175c65b9ecSFande Kong * The row could be local or remote 55185c65b9ecSFande Kong * */ 551934bcad68SFande Kong owner = 0; 552034bcad68SFande Kong lidx = 0; 55219566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55225c65b9ecSFande Kong iremote[i].index = lidx; 55235c65b9ecSFande Kong iremote[i].rank = owner; 55245c65b9ecSFande Kong } 55255c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55269566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5527f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55285c65b9ecSFande Kong * offsets 55295c65b9ecSFande Kong * */ 55309566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55319566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55329566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5533bc8e477aSFande Kong 55349566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55375c65b9ecSFande Kong roffsets[0] = 0; 55385c65b9ecSFande Kong roffsets[1] = 0; 55395c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55404cf0e950SBarry Smith /* diagonal */ 55415c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55424cf0e950SBarry Smith /* off-diagonal */ 55435c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55445c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55455c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55465c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55475c65b9ecSFande Kong } 55489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55505c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55569566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55579566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55585c65b9ecSFande Kong dntotalcols = 0; 55595c65b9ecSFande Kong ontotalcols = 0; 5560bc8e477aSFande Kong ncol = 0; 55615c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55625c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5563bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55644cf0e950SBarry Smith /* diagonal */ 55655c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55664cf0e950SBarry Smith /* off-diagonal */ 55675c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55685c65b9ecSFande Kong } 55695c65b9ecSFande Kong /* We do not need to figure the right number of columns 55705c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55715c65b9ecSFande Kong * */ 55729566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55739566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55749566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55755c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55764cf0e950SBarry Smith /* diagonal */ 55779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55784cf0e950SBarry Smith /* off-diagonal */ 55799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55804cf0e950SBarry Smith /* diagonal */ 55819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55824cf0e950SBarry Smith /* off-diagonal */ 55839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55845c65b9ecSFande Kong dntotalcols = 0; 55855c65b9ecSFande Kong ontotalcols = 0; 55865c65b9ecSFande Kong ntotalcols = 0; 55875c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558834bcad68SFande Kong owner = 0; 55899566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55905c65b9ecSFande Kong /* Set iremote for diag matrix */ 55915c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55925c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55935c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55945c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55955c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55965c65b9ecSFande Kong } 55974cf0e950SBarry Smith /* off-diagonal */ 55985c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55995c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56005c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56015c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56025c65b9ecSFande Kong } 56035c65b9ecSFande Kong } 56049566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56059566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56069566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56079566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56085c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56095c65b9ecSFande Kong * Diag matrix 56105c65b9ecSFande Kong * */ 56119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56129566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56139566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56145c65b9ecSFande Kong 56159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56164cf0e950SBarry Smith /* off-diagonal */ 56179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56189566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56199566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56224cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56265c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56275c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56295c65b9ecSFande Kong /* We want P_oth store global indices */ 56309566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56315c65b9ecSFande Kong /* Use memory scalable approach */ 56329566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56339566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56365c65b9ecSFande Kong /* Convert back to local indices */ 56375c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56395c65b9ecSFande Kong nout = 0; 56409566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 564108401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56429566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56435c65b9ecSFande Kong /* Exchange values */ 56449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56485c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56495c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56525c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56539566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56549566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56585c65b9ecSFande Kong } 56595c65b9ecSFande Kong 56605c65b9ecSFande Kong /* 56615c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56625c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56635c65b9ecSFande Kong * */ 5664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5665d71ae5a4SJacob Faibussowitsch { 56665c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5667bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5668bc8e477aSFande Kong IS rows, map; 5669bc8e477aSFande Kong PetscHMapI hamp; 5670bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56715c65b9ecSFande Kong MPI_Comm comm; 56725c65b9ecSFande Kong PetscSF sf, osf; 5673bc8e477aSFande Kong PetscBool has; 56745c65b9ecSFande Kong 56755c65b9ecSFande Kong PetscFunctionBegin; 56769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56785c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56795c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56805c65b9ecSFande Kong * */ 56815c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56825c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5683eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56849566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5685bc8e477aSFande Kong count = 0; 5686bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5687bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5688bc8e477aSFande Kong key = a->garray[i] / dof; 56899566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5690bc8e477aSFande Kong if (!has) { 5691bc8e477aSFande Kong mapping[i] = count; 56929566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5693bc8e477aSFande Kong } else { 5694bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5695bc8e477aSFande Kong mapping[i] = count - 1; 56965c65b9ecSFande Kong } 5697bc8e477aSFande Kong } 56989566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56999566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5700eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57019566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57025c65b9ecSFande Kong off = 0; 57039566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57049566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57059566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57069566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57075c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57089566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57099566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57109566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57135c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57145c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571535cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5716fff043a9SJunchao Zhang */ 5717fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5718fff043a9SJunchao Zhang 57199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57209566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 572108401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57225c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57235c65b9ecSFande Kong /* Update values in place */ 57249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57326718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57355c65b9ecSFande Kong } 57365c65b9ecSFande Kong 573725616d81SHong Zhang /*@C 573820f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573925616d81SHong Zhang 5740c3339decSBarry Smith Collective 574125616d81SHong Zhang 574225616d81SHong Zhang Input Parameters: 574311a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574411a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574625616d81SHong Zhang 5747f1a722f8SMatthew G. Knepley Output Parameters: 574827430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574927430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5750f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 575125616d81SHong Zhang 575225616d81SHong Zhang Level: developer 575325616d81SHong Zhang 575420f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575525616d81SHong Zhang @*/ 5756d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5757d71ae5a4SJacob Faibussowitsch { 5758899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5759b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 576025616d81SHong Zhang IS isrowb, iscolb; 57610298fd71SBarry Smith Mat *bseq = NULL; 576225616d81SHong Zhang 576325616d81SHong Zhang PetscFunctionBegin; 576420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57669566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576725616d81SHong Zhang 576825616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5769d0f46423SBarry Smith start = A->cmap->rstart; 577025616d81SHong Zhang cmap = a->garray; 5771d0f46423SBarry Smith nzA = a->A->cmap->n; 5772d0f46423SBarry Smith nzB = a->B->cmap->n; 57739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577425616d81SHong Zhang ncols = 0; 57750390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577625616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577725616d81SHong Zhang else break; 577825616d81SHong Zhang } 577925616d81SHong Zhang imark = i; 57800390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57810390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57829566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57839566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578425616d81SHong Zhang } else { 578508401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57869371c9d4SSatish Balay isrowb = *rowb; 57879371c9d4SSatish Balay iscolb = *colb; 57889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578925616d81SHong Zhang bseq[0] = *B_seq; 579025616d81SHong Zhang } 57919566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579225616d81SHong Zhang *B_seq = bseq[0]; 57939566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579425616d81SHong Zhang if (!rowb) { 57959566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579625616d81SHong Zhang } else { 579725616d81SHong Zhang *rowb = isrowb; 579825616d81SHong Zhang } 579925616d81SHong Zhang if (!colb) { 58009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 580125616d81SHong Zhang } else { 580225616d81SHong Zhang *colb = iscolb; 580325616d81SHong Zhang } 58049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580625616d81SHong Zhang } 5807429d309bSHong Zhang 5808f8487c73SHong Zhang /* 580927430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 581001b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5811429d309bSHong Zhang 5812c3339decSBarry Smith Collective 5813429d309bSHong Zhang 5814429d309bSHong Zhang Input Parameters: 581527430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581627430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5817429d309bSHong Zhang 5818429d309bSHong Zhang Output Parameter: 58190298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58200298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58210298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5822598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5823429d309bSHong Zhang 582411a5261eSBarry Smith Developer Note: 582511a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58266eb45d04SBarry Smith for this matrix. This is not desirable.. 58276eb45d04SBarry Smith 5828429d309bSHong Zhang Level: developer 5829429d309bSHong Zhang 5830f8487c73SHong Zhang */ 58316497c311SBarry Smith 5832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5833d71ae5a4SJacob Faibussowitsch { 5834899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58354b8d542aSHong Zhang VecScatter ctx; 5836ce94432eSBarry Smith MPI_Comm comm; 58373515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58386497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58393515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5840277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58416497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5842277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5843ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5844ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5845429d309bSHong Zhang 5846429d309bSHong Zhang PetscFunctionBegin; 58479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5849a7c7454dSHong Zhang 585020f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 585120f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5854a6b2eed2SHong Zhang 5855ec07b8f8SHong Zhang if (size == 1) { 5856ec07b8f8SHong Zhang startsj_s = NULL; 5857ec07b8f8SHong Zhang bufa_ptr = NULL; 585852f7967eSHong Zhang *B_oth = NULL; 58593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5860ec07b8f8SHong Zhang } 5861ec07b8f8SHong Zhang 5862fa83eaafSHong Zhang ctx = a->Mvctx; 58634b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58644b8d542aSHong Zhang 58659566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58663515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58679566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58689566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5870ddea5d60SJunchao Zhang rwaits = reqs; 58718e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5872429d309bSHong Zhang 5873b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5874429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5875a6b2eed2SHong Zhang /* i-array */ 5876a6b2eed2SHong Zhang /* post receives */ 58779566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5878a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587974268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5880e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58816497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5882429d309bSHong Zhang } 5883a6b2eed2SHong Zhang 5884a6b2eed2SHong Zhang /* pack the outgoing message */ 58859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58862205254eSKarl Rupp 58872205254eSKarl Rupp sstartsj[0] = 0; 58882205254eSKarl Rupp rstartsj[0] = 0; 5889a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58903515ee7fSJunchao Zhang if (nsends) { 58913515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58933515ee7fSJunchao Zhang } 5894a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58953515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5896e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589787025532SHong Zhang for (j = 0; j < nrows; j++) { 5898d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5899e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59009566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59012205254eSKarl Rupp 5902e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59032205254eSKarl Rupp 5904e42f35eeSHong Zhang len += ncols; 59059566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5906e42f35eeSHong Zhang } 5907a6b2eed2SHong Zhang k++; 5908429d309bSHong Zhang } 59096497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59102205254eSKarl Rupp 5911dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5912429d309bSHong Zhang } 591387025532SHong Zhang /* recvs and sends of i-array are completed */ 59149566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59159566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5916e42f35eeSHong Zhang 5917a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5920a6b2eed2SHong Zhang 592187025532SHong Zhang /* create i-array of B_oth */ 59229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59232205254eSKarl Rupp 592487025532SHong Zhang b_othi[0] = 0; 5925a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5926a6b2eed2SHong Zhang k = 0; 5927a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59283515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59293515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 593087025532SHong Zhang for (j = 0; j < nrows; j++) { 593187025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59329566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5933f91af8c7SBarry Smith k++; 5934a6b2eed2SHong Zhang } 5935dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5936a6b2eed2SHong Zhang } 59379566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5938a6b2eed2SHong Zhang 59396aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5942a6b2eed2SHong Zhang 594387025532SHong Zhang /* j-array */ 5944a6b2eed2SHong Zhang /* post receives of j-array */ 5945a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594687025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59476497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5948a6b2eed2SHong Zhang } 5949e42f35eeSHong Zhang 5950e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59513515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5952a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5953e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5954a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595587025532SHong Zhang for (j = 0; j < nrows; j++) { 5956d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5957e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59589566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5959ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59609566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5961e42f35eeSHong Zhang } 596287025532SHong Zhang } 59636497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596487025532SHong Zhang } 596587025532SHong Zhang 596687025532SHong Zhang /* recvs and sends of j-array are completed */ 59679566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596887025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5969b7f45c76SHong Zhang sstartsj = *startsj_s; 59701d79065fSBarry Smith rstartsj = *startsj_r; 597187025532SHong Zhang bufa = *bufa_ptr; 59729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5973ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597487025532SHong Zhang 597587025532SHong Zhang /* a-array */ 597687025532SHong Zhang /* post receives of a-array */ 597787025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597887025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59796497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 598087025532SHong Zhang } 5981e42f35eeSHong Zhang 5982e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59833515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598487025532SHong Zhang for (i = 0; i < nsends; i++) { 5985e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598687025532SHong Zhang bufA = bufa + sstartsj[i]; 598787025532SHong Zhang for (j = 0; j < nrows; j++) { 5988d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5989e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59909566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5991ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5993e42f35eeSHong Zhang } 5994a6b2eed2SHong Zhang } 59956497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5996a6b2eed2SHong Zhang } 599787025532SHong Zhang /* recvs and sends of a-array are completed */ 59989566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59999566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6000a6b2eed2SHong Zhang 600187025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6002dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 6003dd460d27SBarry Smith 6004a6b2eed2SHong Zhang /* put together the new matrix */ 60059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6006a6b2eed2SHong Zhang 6007a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6008a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600987025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6010e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6011e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 601287025532SHong Zhang b_oth->nonew = 0; 6013a6b2eed2SHong Zhang 60149566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6015b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60169566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60179566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6018dea91ad1SHong Zhang } else { 6019b7f45c76SHong Zhang *startsj_s = sstartsj; 60201d79065fSBarry Smith *startsj_r = rstartsj; 602187025532SHong Zhang *bufa_ptr = bufa; 602287025532SHong Zhang } 6023fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6025dea91ad1SHong Zhang } 60263515ee7fSJunchao Zhang 60279566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60289566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6031429d309bSHong Zhang } 6032ccd8e176SBarry Smith 6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6034cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6035ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60369779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6037a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6038191b95cbSRichard Tran Mills #endif 6039ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6040cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60415d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6042cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60435d7652ecSHong Zhang #endif 6044d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6045d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6046d24d4204SJose E. Roman #endif 604763c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604863c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604963c07aadSStefano Zampini #endif 60503338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60513338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60523338378cSStefano Zampini #endif 6053d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6054d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6055d5e393b6SSuyash Tandon #endif 60563d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60573d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60583d0639e7SStefano Zampini #endif 6059d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60604222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60614222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 606217667f90SBarry Smith 6063fc4dec0aSBarry Smith /* 6064fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6065fc4dec0aSBarry Smith 6066fc4dec0aSBarry Smith n p p 60672da392ccSBarry Smith [ ] [ ] [ ] 60682da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60692da392ccSBarry Smith [ ] [ ] [ ] 6070fc4dec0aSBarry Smith 6071fc4dec0aSBarry Smith */ 6072d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6073d71ae5a4SJacob Faibussowitsch { 6074fc4dec0aSBarry Smith Mat At, Bt, Ct; 6075fc4dec0aSBarry Smith 6076fc4dec0aSBarry Smith PetscFunctionBegin; 60779566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60789566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6079fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60827fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60839566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6086fc4dec0aSBarry Smith } 6087fc4dec0aSBarry Smith 6088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6089d71ae5a4SJacob Faibussowitsch { 60906718818eSStefano Zampini PetscBool cisdense; 6091fc4dec0aSBarry Smith 6092fc4dec0aSBarry Smith PetscFunctionBegin; 609308401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6096d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609748a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60989566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6099f75ecaa4SHong Zhang 61004222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6102fc4dec0aSBarry Smith } 6103fc4dec0aSBarry Smith 6104d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6105d71ae5a4SJacob Faibussowitsch { 61064222ddf1SHong Zhang Mat_Product *product = C->product; 61074222ddf1SHong Zhang Mat A = product->A, B = product->B; 6108fc4dec0aSBarry Smith 6109fc4dec0aSBarry Smith PetscFunctionBegin; 611020f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 611120f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61124222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61134222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6115fc4dec0aSBarry Smith } 6116fc4dec0aSBarry Smith 6117d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6118d71ae5a4SJacob Faibussowitsch { 61194222ddf1SHong Zhang Mat_Product *product = C->product; 61204222ddf1SHong Zhang 61214222ddf1SHong Zhang PetscFunctionBegin; 612248a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61244222ddf1SHong Zhang } 6125394ed5ebSJunchao Zhang 612627430b45SBarry Smith /* 612727430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6128394ed5ebSJunchao Zhang 6129394ed5ebSJunchao Zhang Input Parameters: 6130394ed5ebSJunchao Zhang 6131651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6132651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6133394ed5ebSJunchao Zhang 6134158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6135394ed5ebSJunchao Zhang 6136394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6137394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6138394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6139394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6140394ed5ebSJunchao Zhang 6141394ed5ebSJunchao Zhang Similar for Set2. 6142394ed5ebSJunchao Zhang 6143394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6144394ed5ebSJunchao Zhang 6145158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6146394ed5ebSJunchao Zhang 6147394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6148394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6149394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6150394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6151394ed5ebSJunchao Zhang */ 6152d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6153d71ae5a4SJacob Faibussowitsch { 6154394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6155394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6156394ed5ebSJunchao Zhang 6157394ed5ebSJunchao Zhang PetscFunctionBegin; 61589566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6159394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6160394ed5ebSJunchao Zhang i[0] = 0; 6161394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6162394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6163394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6164394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6165394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6166394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6167394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6168394ed5ebSJunchao Zhang j[t] = j1[b1]; 6169394ed5ebSJunchao Zhang imap1[t1] = t; 6170394ed5ebSJunchao Zhang imap2[t2] = t; 6171394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6172394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61739371c9d4SSatish Balay t1++; 61749371c9d4SSatish Balay t2++; 61759371c9d4SSatish Balay t++; 6176394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6177394ed5ebSJunchao Zhang j[t] = j1[b1]; 6178394ed5ebSJunchao Zhang imap1[t1] = t; 6179394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61809371c9d4SSatish Balay t1++; 61819371c9d4SSatish Balay t++; 6182394ed5ebSJunchao Zhang } else { 6183394ed5ebSJunchao Zhang j[t] = j2[b2]; 6184394ed5ebSJunchao Zhang imap2[t2] = t; 6185394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61869371c9d4SSatish Balay t2++; 61879371c9d4SSatish Balay t++; 6188394ed5ebSJunchao Zhang } 6189394ed5ebSJunchao Zhang } 6190394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6191394ed5ebSJunchao Zhang while (b1 < e1) { 6192394ed5ebSJunchao Zhang j[t] = j1[b1]; 6193394ed5ebSJunchao Zhang imap1[t1] = t; 6194394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61959371c9d4SSatish Balay t1++; 61969371c9d4SSatish Balay t++; 6197394ed5ebSJunchao Zhang } 6198394ed5ebSJunchao Zhang while (b2 < e2) { 6199394ed5ebSJunchao Zhang j[t] = j2[b2]; 6200394ed5ebSJunchao Zhang imap2[t2] = t; 6201394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62029371c9d4SSatish Balay t2++; 62039371c9d4SSatish Balay t++; 6204394ed5ebSJunchao Zhang } 62056497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6206394ed5ebSJunchao Zhang } 62073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6208394ed5ebSJunchao Zhang } 6209394ed5ebSJunchao Zhang 621027430b45SBarry Smith /* 621127430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6212394ed5ebSJunchao Zhang 6213394ed5ebSJunchao Zhang Input Parameters: 6214394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6215394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6216394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6217394ed5ebSJunchao Zhang 6218394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6219394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6220394ed5ebSJunchao Zhang 6221394ed5ebSJunchao Zhang Output Parameters: 6222394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6223394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6224394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6225394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6226394ed5ebSJunchao Zhang 6227394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6228158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6229158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6230394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6231394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6232394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6233394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6234394ed5ebSJunchao Zhang 6235394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6236394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6237394ed5ebSJunchao Zhang 6238394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6239394ed5ebSJunchao Zhang 6240158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6241394ed5ebSJunchao Zhang */ 6242d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6243d71ae5a4SJacob Faibussowitsch { 6244394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6245394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6246394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6247394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6248394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6249394ed5ebSJunchao Zhang 6250394ed5ebSJunchao Zhang PetscFunctionBegin; 62519566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62529566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6253394ed5ebSJunchao Zhang m = rend - rstart; 6254394ed5ebSJunchao Zhang 6255651b1cf9SStefano Zampini /* Skip negative rows */ 6256651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62579371c9d4SSatish Balay if (i[k] >= 0) break; 6258394ed5ebSJunchao Zhang 6259394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6260394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6261394ed5ebSJunchao Zhang */ 6262394ed5ebSJunchao Zhang while (k < n) { 6263394ed5ebSJunchao Zhang row = i[k]; 6264394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62659371c9d4SSatish Balay for (s = k; s < n; s++) 62669371c9d4SSatish Balay if (i[s] != row) break; 6267651b1cf9SStefano Zampini 62681690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6269394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62701690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 627154c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6272394ed5ebSJunchao Zhang } 62739566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6274158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6275394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6276394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6277394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6278394ed5ebSJunchao Zhang 6279394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6280394ed5ebSJunchao Zhang Atot += mid - k; 6281394ed5ebSJunchao Zhang Btot += s - mid; 6282394ed5ebSJunchao Zhang 6283651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6284394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6285394ed5ebSJunchao Zhang col = j[p]; 62869371c9d4SSatish Balay do { 62871690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62889371c9d4SSatish Balay p++; 6289651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6290394ed5ebSJunchao Zhang Annz++; 6291394ed5ebSJunchao Zhang } 6292394ed5ebSJunchao Zhang 6293651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6294394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6295394ed5ebSJunchao Zhang col = j[p]; 6296d71ae5a4SJacob Faibussowitsch do { 6297d71ae5a4SJacob Faibussowitsch p++; 6298d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6299394ed5ebSJunchao Zhang Bnnz++; 6300394ed5ebSJunchao Zhang } 6301394ed5ebSJunchao Zhang k = s; 6302394ed5ebSJunchao Zhang } 6303394ed5ebSJunchao Zhang 6304394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6305158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6306158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6307158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6308158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6309394ed5ebSJunchao Zhang 63106aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6311394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6312394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6313394ed5ebSJunchao Zhang k = rowBegin[r]; 6314394ed5ebSJunchao Zhang mid = rowMid[r]; 6315394ed5ebSJunchao Zhang s = rowEnd[r]; 63168e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63178e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6318394ed5ebSJunchao Zhang Atot += mid - k; 6319394ed5ebSJunchao Zhang Btot += s - mid; 6320394ed5ebSJunchao Zhang 6321394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6322394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6323394ed5ebSJunchao Zhang col = j[p]; 6324394ed5ebSJunchao Zhang q = p; 6325d71ae5a4SJacob Faibussowitsch do { 6326d71ae5a4SJacob Faibussowitsch p++; 6327d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6328394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6329394ed5ebSJunchao Zhang Annz++; 6330394ed5ebSJunchao Zhang } 6331394ed5ebSJunchao Zhang 6332394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6333394ed5ebSJunchao Zhang col = j[p]; 6334394ed5ebSJunchao Zhang q = p; 6335d71ae5a4SJacob Faibussowitsch do { 6336d71ae5a4SJacob Faibussowitsch p++; 6337d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6338394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6339394ed5ebSJunchao Zhang Bnnz++; 6340394ed5ebSJunchao Zhang } 6341394ed5ebSJunchao Zhang } 6342394ed5ebSJunchao Zhang /* Output */ 6343394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6344394ed5ebSJunchao Zhang *Annz_ = Annz; 6345394ed5ebSJunchao Zhang *Atot_ = Atot; 6346394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6347394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6348394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6349394ed5ebSJunchao Zhang *Btot_ = Btot; 6350394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6352394ed5ebSJunchao Zhang } 6353394ed5ebSJunchao Zhang 635427430b45SBarry Smith /* 635527430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6356158ec288SJunchao Zhang 6357158ec288SJunchao Zhang Input Parameters: 6358158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6359158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6360158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6361651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6362158ec288SJunchao Zhang 6363158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6364158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6365158ec288SJunchao Zhang 6366158ec288SJunchao Zhang Example: 6367158ec288SJunchao Zhang nnz1 = 4 6368158ec288SJunchao Zhang nnz = 6 6369158ec288SJunchao Zhang imap = [1,3,4,5] 6370158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6371158ec288SJunchao Zhang then, 6372158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6373158ec288SJunchao Zhang */ 6374d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6375d71ae5a4SJacob Faibussowitsch { 6376158ec288SJunchao Zhang PetscCount k, p; 6377158ec288SJunchao Zhang 6378158ec288SJunchao Zhang PetscFunctionBegin; 6379158ec288SJunchao Zhang jmap_new[0] = 0; 6380158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6381158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6382158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6383158ec288SJunchao Zhang } 6384158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6386158ec288SJunchao Zhang } 6387158ec288SJunchao Zhang 638849abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63892c4ab24aSJunchao Zhang { 639049abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63912c4ab24aSJunchao Zhang 63922c4ab24aSJunchao Zhang PetscFunctionBegin; 63932c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64032c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64042c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64052c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64062c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64072c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64082c4ab24aSJunchao Zhang } 64092c4ab24aSJunchao Zhang 6410d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6411d71ae5a4SJacob Faibussowitsch { 6412394ed5ebSJunchao Zhang MPI_Comm comm; 6413394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6414394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6415394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6416394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64172c4ab24aSJunchao Zhang PetscContainer container; 64182c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6419394ed5ebSJunchao Zhang 6420394ed5ebSJunchao Zhang PetscFunctionBegin; 64219566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6423cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6424eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6425cbc6b225SStefano Zampini #else 64269566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6427cbc6b225SStefano Zampini #endif 64289566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6429cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6430cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6431cbc6b225SStefano Zampini 64329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64379566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64389566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64399566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64409566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6441394ed5ebSJunchao Zhang 64426aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6443394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6444394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6445e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6446e8729f6fSJunchao Zhang 6447e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6448394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6449394ed5ebSJunchao Zhang 6450394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6451394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6452394ed5ebSJunchao Zhang will have positive row indices. 6453394ed5ebSJunchao Zhang */ 6454394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64551690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64561690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6457f7d195e4SLawrence Mitchell else { 6458f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64591690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6460f7d195e4SLawrence Mitchell } 6461394ed5ebSJunchao Zhang } 6462394ed5ebSJunchao Zhang 6463da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64649566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6465651b1cf9SStefano Zampini 6466651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6467651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64681690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64696497c311SBarry Smith PetscCount i1start = k; 6470651b1cf9SStefano Zampini 64711690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64721690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6473394ed5ebSJunchao Zhang 6474394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6475394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6476394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6477394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6478394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6479394ed5ebSJunchao Zhang const PetscInt *ranges; 6480394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6481394ed5ebSJunchao Zhang 64829566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6484394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6485394ed5ebSJunchao Zhang PetscMPIInt owner; 6486394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6487cbc6b225SStefano Zampini 6488394ed5ebSJunchao Zhang /* Locate a row range */ 6489394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64909566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6491394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6492394ed5ebSJunchao Zhang 6493394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64949566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6495394ed5ebSJunchao Zhang 6496394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6497394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6498394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6499394ed5ebSJunchao Zhang PetscInt *nentries2; 6500394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6501cbc6b225SStefano Zampini 65029566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65059566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6506394ed5ebSJunchao Zhang sendto = sendto2; 6507394ed5ebSJunchao Zhang nentries = nentries2; 6508394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6509394ed5ebSJunchao Zhang } 6510394ed5ebSJunchao Zhang sendto[nsend] = owner; 65116497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6512394ed5ebSJunchao Zhang nsend++; 6513394ed5ebSJunchao Zhang k = p; 6514394ed5ebSJunchao Zhang } 6515394ed5ebSJunchao Zhang 6516394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6517394ed5ebSJunchao Zhang PetscSF sf1; 6518394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6519394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6520394ed5ebSJunchao Zhang PetscInt *offsets; 6521394ed5ebSJunchao Zhang PetscSFNode *iremote; 6522394ed5ebSJunchao Zhang 65239566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6526394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6527394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6528394ed5ebSJunchao Zhang iremote[k].index = 0; 6529394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 653054c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6531394ed5ebSJunchao Zhang } 65329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65339566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65349566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6536e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6537394ed5ebSJunchao Zhang 6538394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6539394ed5ebSJunchao Zhang PetscSF sf2; 6540394ed5ebSJunchao Zhang nroots = nroots2; 6541394ed5ebSJunchao Zhang nleaves = nleaves2; 65429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65439566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6545394ed5ebSJunchao Zhang p = 0; 6546394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654754c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6548394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6549394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65506497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6551394ed5ebSJunchao Zhang } 6552394ed5ebSJunchao Zhang } 65539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6554394ed5ebSJunchao Zhang 6555394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6556394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6557394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65589566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6559834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6560834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6561de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6562de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6563834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6564834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6565834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6566834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6567394ed5ebSJunchao Zhang 65689566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65699566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6570394ed5ebSJunchao Zhang 6571394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6572394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65739566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6574394ed5ebSJunchao Zhang 6575651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6576651b1cf9SStefano Zampini PetscCount *Cperm1; 6577834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6578de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6579651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6580834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6581651b1cf9SStefano Zampini 6582651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6583651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6584651b1cf9SStefano Zampini PetscBool hypre; 658517b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6586651b1cf9SStefano Zampini if (hypre) { 6587651b1cf9SStefano Zampini PetscInt *minj; 6588651b1cf9SStefano Zampini PetscBT hasdiag; 6589651b1cf9SStefano Zampini 6590651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6591651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65921690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6593651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6594651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6595651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6596651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6597651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6598651b1cf9SStefano Zampini } 6599651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6600651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6601651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6602651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6603651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6604651b1cf9SStefano Zampini } 6605651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6606651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6607651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6608651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6609651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6610651b1cf9SStefano Zampini } 6611651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6612651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6613651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6614651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6615651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6616651b1cf9SStefano Zampini } 6617651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6618651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6619651b1cf9SStefano Zampini } 6620651b1cf9SStefano Zampini 6621651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6622651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6623651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6624651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6625394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6626394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6627394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6628394ed5ebSJunchao Zhang 6629651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66309566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6631651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66329566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6633394ed5ebSJunchao Zhang 6634394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6635394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6636394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6637394ed5ebSJunchao Zhang 66389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6642394ed5ebSJunchao Zhang 6643394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6644158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6645158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6646158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6647158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6648394ed5ebSJunchao Zhang 66499566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66509566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6651158ec288SJunchao Zhang 6652158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6653158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6654158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6655158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6656158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6657158ec288SJunchao Zhang 6658158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6659158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6660158ec288SJunchao Zhang 6661158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6662158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6663158ec288SJunchao Zhang 6664158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6665158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6666158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6667158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66689566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66699566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6670e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66719566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6672394ed5ebSJunchao Zhang 6673158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6674158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6675158ec288SJunchao Zhang 6676394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6677394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6678394ed5ebSJunchao Zhang PetscInt *Aj_new; 66799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66819566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6682394ed5ebSJunchao Zhang Aj = Aj_new; 6683394ed5ebSJunchao Zhang } 6684394ed5ebSJunchao Zhang 6685394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6686394ed5ebSJunchao Zhang PetscInt *Bj_new; 66879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66899566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6690394ed5ebSJunchao Zhang Bj = Bj_new; 6691394ed5ebSJunchao Zhang } 6692394ed5ebSJunchao Zhang 6693cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6694394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6695cbc6b225SStefano Zampini MatType rtype; 6696394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6697cf8ba265SJunchao Zhang PetscObjectState state; 66989566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6700394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67019371c9d4SSatish Balay if (cstart) { 67029371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67039371c9d4SSatish Balay } 6704c508b908SBarry Smith 67059566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6706c508b908SBarry Smith 6707c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6708c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67099566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67100da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6711c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6712c508b908SBarry Smith 6713c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6714c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67159566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67160da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6717c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6718c508b908SBarry Smith 67199566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67205bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6721cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6722462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6723cbc6b225SStefano Zampini 6724394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6725394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67269f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67279f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67289f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67299f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 673017b874c6SStefano Zampini a->maxnz = a->nz; 673117b874c6SStefano Zampini b->maxnz = b->nz; 6732394ed5ebSJunchao Zhang 6733cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67349566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67359566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67369566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67379566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6738cbc6b225SStefano Zampini 67392c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67402c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67412c4ab24aSJunchao Zhang coo->n = coo_n; 67422c4ab24aSJunchao Zhang coo->sf = sf2; 67432c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67442c4ab24aSJunchao Zhang coo->recvlen = nroots; 67452c4ab24aSJunchao Zhang coo->Annz = Annz; 67462c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67472c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67482c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67492c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67502c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67512c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67522c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67532c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67542c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67552c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67562c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67572c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67582c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67592c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67602c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67612c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67622c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67632c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67642c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67652c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67662c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67672c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 676849abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67692c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67702c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6772394ed5ebSJunchao Zhang } 6773394ed5ebSJunchao Zhang 6774d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6775d71ae5a4SJacob Faibussowitsch { 6776394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6777394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6778394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67792c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67802c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67812c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67822c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67832c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67842c4ab24aSJunchao Zhang PetscContainer container; 67852c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6786394ed5ebSJunchao Zhang 6787394ed5ebSJunchao Zhang PetscFunctionBegin; 67882c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67892c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67902c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67912c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67922c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67932c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67942c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67952c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67962c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67972c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67982c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67992c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 68002c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68012c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68022c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68032c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68042c4ab24aSJunchao Zhang 68059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6807394ed5ebSJunchao Zhang 6808394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68092c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6810394ed5ebSJunchao Zhang 6811394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68122c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6813394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68142c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6815da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6816158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6817158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6818394ed5ebSJunchao Zhang } 68192c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6820158ec288SJunchao Zhang PetscScalar sum = 0.0; 6821158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6822158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6823394ed5ebSJunchao Zhang } 68242c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6825394ed5ebSJunchao Zhang 6826394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68272c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6828394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6829394ed5ebSJunchao Zhang } 68302c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6831394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6832394ed5ebSJunchao Zhang } 68339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6836394ed5ebSJunchao Zhang } 6837394ed5ebSJunchao Zhang 6838ccd8e176SBarry Smith /*MC 6839ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6840ccd8e176SBarry Smith 6841ccd8e176SBarry Smith Options Database Keys: 684211a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6843ccd8e176SBarry Smith 6844ccd8e176SBarry Smith Level: beginner 68450cd7f59aSBarry Smith 68460cd7f59aSBarry Smith Notes: 68472ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68480cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68490cd7f59aSBarry Smith in the matrix 68500cd7f59aSBarry Smith 685111a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 685211a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6853ccd8e176SBarry Smith 68541cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6855ccd8e176SBarry Smith M*/ 6856d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6857d71ae5a4SJacob Faibussowitsch { 6858ccd8e176SBarry Smith Mat_MPIAIJ *b; 6859ccd8e176SBarry Smith PetscMPIInt size; 6860ccd8e176SBarry Smith 6861ccd8e176SBarry Smith PetscFunctionBegin; 68629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68632205254eSKarl Rupp 68644dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6865ccd8e176SBarry Smith B->data = (void *)b; 6866aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6867ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6868ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6869ccd8e176SBarry Smith b->size = size; 68702205254eSKarl Rupp 68719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6872ccd8e176SBarry Smith 6873ccd8e176SBarry Smith /* build cache for off array entries formed */ 68749566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68752205254eSKarl Rupp 6876ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6877f4259b30SLisandro Dalcin b->colmap = NULL; 6878f4259b30SLisandro Dalcin b->garray = NULL; 6879ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6880ccd8e176SBarry Smith 6881ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68820298fd71SBarry Smith b->lvec = NULL; 68830298fd71SBarry Smith b->Mvctx = NULL; 6884ccd8e176SBarry Smith 6885ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6886f4259b30SLisandro Dalcin b->rowindices = NULL; 6887f4259b30SLisandro Dalcin b->rowvalues = NULL; 6888ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6889ccd8e176SBarry Smith 6890f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68910298fd71SBarry Smith b->spptr = NULL; 6892f60c3dc2SHong Zhang 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6899674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 69009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69043d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69063d0639e7SStefano Zampini #endif 6907d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6908d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6909d5e393b6SSuyash Tandon #endif 69103d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69123d0639e7SStefano Zampini #endif 69139779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6915191b95cbSRichard Tran Mills #endif 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69205d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69225d7652ecSHong Zhang #endif 6923d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6925d24d4204SJose E. Roman #endif 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69283dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69313dad0653Sstefano_zampini #endif 69329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69369566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6938ccd8e176SBarry Smith } 693981824310SBarry Smith 69405d83a8b1SBarry Smith /*@ 694111a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 694203bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 694303bfb495SBarry Smith 6944d083f849SBarry Smith Collective 694503bfb495SBarry Smith 694603bfb495SBarry Smith Input Parameters: 694703bfb495SBarry Smith + comm - MPI communicator 694811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 694903bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6950d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69512ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69522ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69532ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6954483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 695504ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 695603bfb495SBarry Smith . a - matrix values 6957483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69582ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 695903bfb495SBarry Smith - oa - matrix values 696003bfb495SBarry Smith 696103bfb495SBarry Smith Output Parameter: 696203bfb495SBarry Smith . mat - the matrix 696303bfb495SBarry Smith 696403bfb495SBarry Smith Level: advanced 696503bfb495SBarry Smith 696603bfb495SBarry Smith Notes: 6967f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6968292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 696903bfb495SBarry Smith 69702ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 697103bfb495SBarry Smith 69722ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 697303bfb495SBarry Smith 69747b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69757b55108eSBarry Smith 6976dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6977dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6978dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6979dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 698011a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6981dca341c0SJed Brown communication if it is known that only local entries will be set. 698203bfb495SBarry Smith 69831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6984db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69852b26979fSBarry Smith @*/ 6986d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6987d71ae5a4SJacob Faibussowitsch { 698803bfb495SBarry Smith Mat_MPIAIJ *maij; 698903bfb495SBarry Smith 699003bfb495SBarry Smith PetscFunctionBegin; 699108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6992aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6993aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69949566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69969566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 699703bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69982205254eSKarl Rupp 69998d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 700003bfb495SBarry Smith 70019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 700303bfb495SBarry Smith 70049566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 700603bfb495SBarry Smith 70079566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70109566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70119566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 701303bfb495SBarry Smith } 701403bfb495SBarry Smith 70154e84afc0SStefano Zampini typedef struct { 70164e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70174e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70184e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70194e84afc0SStefano Zampini 70204e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70214e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70224e84afc0SStefano Zampini PetscScalar *bufa; 70234e84afc0SStefano Zampini Mat P_oth; 70244e84afc0SStefano Zampini 70254e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7026ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70274e84afc0SStefano Zampini 7028ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70294e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70304e84afc0SStefano Zampini of the temporary storage */ 70314e84afc0SStefano Zampini PetscBool reusesym; 70324e84afc0SStefano Zampini 70334e84afc0SStefano Zampini /* support for COO values insertion */ 7034ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7035ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7036ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7037ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7038c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7039c215019aSStefano Zampini PetscMemType mtype; 70404e84afc0SStefano Zampini 70414e84afc0SStefano Zampini /* customization */ 70424e84afc0SStefano Zampini PetscBool abmerge; 7043abb89eb1SStefano Zampini PetscBool P_oth_bind; 70444e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70454e84afc0SStefano Zampini 7046ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7047d71ae5a4SJacob Faibussowitsch { 70484e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70494e84afc0SStefano Zampini PetscInt i; 70504e84afc0SStefano Zampini 70514e84afc0SStefano Zampini PetscFunctionBegin; 70529566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70539566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70549566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70559566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70569566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70579566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70589566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 705948a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70609566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70619566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70629566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70639566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70649566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70659566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70674e84afc0SStefano Zampini } 70684e84afc0SStefano Zampini 7069fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7070fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7071fff043a9SJunchao Zhang */ 7072d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7073d71ae5a4SJacob Faibussowitsch { 7074c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7075c215019aSStefano Zampini 7076c215019aSStefano Zampini PetscFunctionBegin; 70779566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7078c215019aSStefano Zampini if (f) { 70799566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7080c215019aSStefano Zampini } else { 7081c215019aSStefano Zampini const PetscScalar *vv; 7082c215019aSStefano Zampini 70839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7084c215019aSStefano Zampini if (n && idx) { 7085c215019aSStefano Zampini PetscScalar *w = v; 7086c215019aSStefano Zampini const PetscInt *oi = idx; 7087c215019aSStefano Zampini PetscInt j; 7088c215019aSStefano Zampini 7089c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7090c215019aSStefano Zampini } else { 70919566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7092c215019aSStefano Zampini } 70939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7094c215019aSStefano Zampini } 70953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7096c215019aSStefano Zampini } 7097c215019aSStefano Zampini 7098d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7099d71ae5a4SJacob Faibussowitsch { 71004e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71014e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71024e84afc0SStefano Zampini 71034e84afc0SStefano Zampini PetscFunctionBegin; 71044e84afc0SStefano Zampini MatCheckProduct(C, 1); 710528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71064e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71074e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 710848a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 710948a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71104e84afc0SStefano Zampini } 71114e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7112abb89eb1SStefano Zampini 7113abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 711408401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71159566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7116abb89eb1SStefano Zampini } 71174e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71186497c311SBarry Smith PetscInt noff; 71194e84afc0SStefano Zampini 71206497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71214e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71224e84afc0SStefano Zampini if (noff) { 71236497c311SBarry Smith PetscInt nown; 7124c215019aSStefano Zampini 71256497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71284e84afc0SStefano Zampini n_o += noff; 71294e84afc0SStefano Zampini n_d += nown; 71304e84afc0SStefano Zampini } else { 7131c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7132c215019aSStefano Zampini 71339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71344e84afc0SStefano Zampini n_d += mm->nz; 71354e84afc0SStefano Zampini } 71364e84afc0SStefano Zampini } 7137c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71389566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71399566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71404e84afc0SStefano Zampini } 71419566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71434e84afc0SStefano Zampini } 71444e84afc0SStefano Zampini 71454e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71464e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7148d71ae5a4SJacob Faibussowitsch { 71494e84afc0SStefano Zampini Mat_Product *product = C->product; 7150ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71514e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71524e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71534e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71544e84afc0SStefano Zampini IS glob = NULL; 71554e84afc0SStefano Zampini const char *prefix; 71564e84afc0SStefano Zampini char pprefix[256]; 71574e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 715882a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 715982a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7160ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7161ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7162ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7163ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7164ddea5d60SJunchao Zhang 71654e84afc0SStefano Zampini MatProductType ptype; 7166d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71674e84afc0SStefano Zampini PetscMPIInt size; 71684e84afc0SStefano Zampini 71694e84afc0SStefano Zampini PetscFunctionBegin; 71704e84afc0SStefano Zampini MatCheckProduct(C, 1); 717128b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71724e84afc0SStefano Zampini ptype = product->type; 7173b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7174fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7175fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7176fa046f9fSJunchao Zhang } 71774e84afc0SStefano Zampini switch (ptype) { 71784e84afc0SStefano Zampini case MATPRODUCT_AB: 71794e84afc0SStefano Zampini A = product->A; 71804e84afc0SStefano Zampini P = product->B; 71814e84afc0SStefano Zampini m = A->rmap->n; 71824e84afc0SStefano Zampini n = P->cmap->n; 71834e84afc0SStefano Zampini M = A->rmap->N; 71844e84afc0SStefano Zampini N = P->cmap->N; 7185ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71864e84afc0SStefano Zampini break; 71874e84afc0SStefano Zampini case MATPRODUCT_AtB: 71884e84afc0SStefano Zampini P = product->A; 71894e84afc0SStefano Zampini A = product->B; 71904e84afc0SStefano Zampini m = P->cmap->n; 71914e84afc0SStefano Zampini n = A->cmap->n; 71924e84afc0SStefano Zampini M = P->cmap->N; 71934e84afc0SStefano Zampini N = A->cmap->N; 71944e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71954e84afc0SStefano Zampini break; 71964e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71974e84afc0SStefano Zampini A = product->A; 71984e84afc0SStefano Zampini P = product->B; 71994e84afc0SStefano Zampini m = P->cmap->n; 72004e84afc0SStefano Zampini n = P->cmap->n; 72014e84afc0SStefano Zampini M = P->cmap->N; 72024e84afc0SStefano Zampini N = P->cmap->N; 72034e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72044e84afc0SStefano Zampini break; 7205d71ae5a4SJacob Faibussowitsch default: 7206d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72074e84afc0SStefano Zampini } 72089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72094e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72104e84afc0SStefano Zampini 72114e84afc0SStefano Zampini /* defaults */ 72124e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72134e84afc0SStefano Zampini mp[i] = NULL; 72144e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72154e84afc0SStefano Zampini rmapt[i] = -1; 72164e84afc0SStefano Zampini cmapt[i] = -1; 72174e84afc0SStefano Zampini rmapa[i] = NULL; 72184e84afc0SStefano Zampini cmapa[i] = NULL; 72194e84afc0SStefano Zampini } 72204e84afc0SStefano Zampini 72214e84afc0SStefano Zampini /* customization */ 72229566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72234e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72244e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72254e84afc0SStefano Zampini if (product->api_user) { 7226d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72289566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7229d0609cedSBarry Smith PetscOptionsEnd(); 72304e84afc0SStefano Zampini } else { 7231d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72329566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7234d0609cedSBarry Smith PetscOptionsEnd(); 7235abb89eb1SStefano Zampini } 7236abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7237abb89eb1SStefano Zampini if (product->api_user) { 7238d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7240d0609cedSBarry Smith PetscOptionsEnd(); 7241abb89eb1SStefano Zampini } else { 7242d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72439566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7244d0609cedSBarry Smith PetscOptionsEnd(); 72454e84afc0SStefano Zampini } 72464e84afc0SStefano Zampini } 72474e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72484e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72529566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72539566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7254ddea5d60SJunchao Zhang 7255ddea5d60SJunchao Zhang cp = 0; 72564e84afc0SStefano Zampini switch (ptype) { 72574e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72589566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72594e84afc0SStefano Zampini 7260ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7261ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72624e84afc0SStefano Zampini /* P is product->B */ 72639566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72649566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72659566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72669566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72679566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72689566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72699566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72704e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72719566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72729566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72744e84afc0SStefano Zampini rmapt[cp] = 1; 72754e84afc0SStefano Zampini cmapt[cp] = 2; 72764e84afc0SStefano Zampini cmapa[cp] = globidx; 72774e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72784e84afc0SStefano Zampini cp++; 7279ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72809566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72819566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72829566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72839566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72849566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72859566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72864e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72889566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72894e84afc0SStefano Zampini rmapt[cp] = 1; 72904e84afc0SStefano Zampini cmapt[cp] = 1; 72914e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72924e84afc0SStefano Zampini cp++; 72939566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72959566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72969566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72979566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72989566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72994e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73019566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73024e84afc0SStefano Zampini rmapt[cp] = 1; 73034e84afc0SStefano Zampini cmapt[cp] = 2; 73044e84afc0SStefano Zampini cmapa[cp] = p->garray; 73054e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73064e84afc0SStefano Zampini cp++; 73074e84afc0SStefano Zampini } 7308ddea5d60SJunchao Zhang 7309ddea5d60SJunchao Zhang /* A_off * P_other */ 73104e84afc0SStefano Zampini if (mmdata->P_oth) { 73119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73129566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7313f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73149566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73159566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73169566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73179566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73189566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73199566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73209566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73214e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73229566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73239566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73244e84afc0SStefano Zampini rmapt[cp] = 1; 73254e84afc0SStefano Zampini cmapt[cp] = 2; 73264e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73274e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73284e84afc0SStefano Zampini cp++; 73294e84afc0SStefano Zampini } 73304e84afc0SStefano Zampini break; 7331ddea5d60SJunchao Zhang 73324e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73334e84afc0SStefano Zampini /* A is product->B */ 73349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7335ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73369566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73379566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73389566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73399566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73409566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73419566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73424e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73439566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73464e84afc0SStefano Zampini rmapt[cp] = 2; 73474e84afc0SStefano Zampini rmapa[cp] = globidx; 73484e84afc0SStefano Zampini cmapt[cp] = 2; 73494e84afc0SStefano Zampini cmapa[cp] = globidx; 73504e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73514e84afc0SStefano Zampini cp++; 73524e84afc0SStefano Zampini } else { 73539566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73549566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73559566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73569566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73579566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73589566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73594e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73609566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73619566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73634e84afc0SStefano Zampini rmapt[cp] = 1; 73644e84afc0SStefano Zampini cmapt[cp] = 2; 73654e84afc0SStefano Zampini cmapa[cp] = globidx; 73664e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73674e84afc0SStefano Zampini cp++; 73689566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73699566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73709566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73729566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73739566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73744e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73769566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73774e84afc0SStefano Zampini rmapt[cp] = 2; 73784e84afc0SStefano Zampini rmapa[cp] = p->garray; 73794e84afc0SStefano Zampini cmapt[cp] = 2; 73804e84afc0SStefano Zampini cmapa[cp] = globidx; 73814e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73824e84afc0SStefano Zampini cp++; 73834e84afc0SStefano Zampini } 73844e84afc0SStefano Zampini break; 73854e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73869566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73874e84afc0SStefano Zampini /* P is product->B */ 73889566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73899566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73909566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73919566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73929566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73939566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73949566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73954e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73969566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73979566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73989566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73994e84afc0SStefano Zampini rmapt[cp] = 2; 74004e84afc0SStefano Zampini rmapa[cp] = globidx; 74014e84afc0SStefano Zampini cmapt[cp] = 2; 74024e84afc0SStefano Zampini cmapa[cp] = globidx; 74034e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74044e84afc0SStefano Zampini cp++; 74054e84afc0SStefano Zampini if (mmdata->P_oth) { 74069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74079566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7408f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74109566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74119566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74129566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74139566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74149566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74159566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74164e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74179566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74189566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74194e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74204e84afc0SStefano Zampini cp++; 74219566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74229566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74239566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74249566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74259566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74269566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74274e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74289566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74299566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74304e84afc0SStefano Zampini rmapt[cp] = 2; 74314e84afc0SStefano Zampini rmapa[cp] = globidx; 74324e84afc0SStefano Zampini cmapt[cp] = 2; 74334e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74344e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74354e84afc0SStefano Zampini cp++; 74364e84afc0SStefano Zampini } 74374e84afc0SStefano Zampini break; 7438d71ae5a4SJacob Faibussowitsch default: 7439d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74404e84afc0SStefano Zampini } 74414e84afc0SStefano Zampini /* sanity check */ 74429371c9d4SSatish Balay if (size > 1) 74439371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74444e84afc0SStefano Zampini 74459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7446ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7447ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7448ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7449ddea5d60SJunchao Zhang } 74504e84afc0SStefano Zampini mmdata->cp = cp; 74514e84afc0SStefano Zampini C->product->data = mmdata; 74524e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74534e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74544e84afc0SStefano Zampini 7455c215019aSStefano Zampini /* memory type */ 7456c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7458d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7460c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7461d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74623214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7463c215019aSStefano Zampini 74644e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7465ddea5d60SJunchao Zhang 7466ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7467ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7468ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7469ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7470ddea5d60SJunchao Zhang */ 74714e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74724e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74734e84afc0SStefano Zampini if (mptmp[cp]) continue; 7474ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74754e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74764e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74774e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74784e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74794e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74804e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74814e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74824e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7483ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7484ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74854e84afc0SStefano Zampini } 74864e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74874e84afc0SStefano Zampini } 7488ddea5d60SJunchao Zhang 7489ddea5d60SJunchao Zhang /* 7490ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7491ddea5d60SJunchao Zhang 7492ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7493ddea5d60SJunchao Zhang 7494d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7495ddea5d60SJunchao Zhang 7496ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7497ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7498ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7499ddea5d60SJunchao Zhang 7500ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7501da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7502ddea5d60SJunchao Zhang */ 75039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75049566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7505ddea5d60SJunchao Zhang 7506ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7507ddea5d60SJunchao Zhang if (hasoffproc) { 75084e84afc0SStefano Zampini PetscSF msf; 75094e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75104e84afc0SStefano Zampini 75119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75139566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7514ddea5d60SJunchao Zhang 75154e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75164e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75174e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75184e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7519ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75204e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75214e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75224e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75234e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75244e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75254e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75264e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75274e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75284e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75294e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75304e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75314e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75324e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7533ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75344e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75354e84afc0SStefano Zampini *coi++ = gr; 75364e84afc0SStefano Zampini *idxoff++ = j; 75374e84afc0SStefano Zampini } 75384e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75394e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75404e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75414e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75424e84afc0SStefano Zampini } else { /* offdiag */ 75434e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75444e84afc0SStefano Zampini } 75454e84afc0SStefano Zampini ncoo_o += nz; 7546ddea5d60SJunchao Zhang } else { /* this is a local row */ 75474e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75484e84afc0SStefano Zampini } 75494e84afc0SStefano Zampini } 75504e84afc0SStefano Zampini } 75514e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75524e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75534e84afc0SStefano Zampini } 75544e84afc0SStefano Zampini 75559566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75566497c311SBarry Smith PetscInt incoo_o; 75576497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75586497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75599566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75609566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75614e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75629566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75639566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75649566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75659566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75669566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75679566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7568ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75699566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75704e84afc0SStefano Zampini coo_i = coo_i2; 75714e84afc0SStefano Zampini coo_j = coo_j2; 75724e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75734e84afc0SStefano Zampini ncoo = ncoo_d; 75749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7575c215019aSStefano Zampini 75769566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75779566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75789566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75794e84afc0SStefano Zampini } 7580c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75814e84afc0SStefano Zampini 7582ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75834e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75844e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75854e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75864e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75874e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75884e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75894e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75904e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75914e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75924e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75934e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75944e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75954e84afc0SStefano Zampini 75964e84afc0SStefano Zampini if (mptmp[cp]) continue; 7597ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7598ddea5d60SJunchao Zhang /* fill coo_i */ 75994e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76004e84afc0SStefano Zampini const PetscInt gr = i + rs; 76014e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76024e84afc0SStefano Zampini } 7603ddea5d60SJunchao Zhang /* fill coo_j */ 7604ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7606ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7607ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7608ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76094e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76104e84afc0SStefano Zampini } 76114e84afc0SStefano Zampini ncoo_d += mm->nz; 7612ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76134e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76144e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76154e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76164e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7617ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76184e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7619ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76204e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76214e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76224e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7623ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76244e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76254e84afc0SStefano Zampini } 76264e84afc0SStefano Zampini ncoo_d += nz; 76274e84afc0SStefano Zampini } 76284e84afc0SStefano Zampini } 76294e84afc0SStefano Zampini } 76304e84afc0SStefano Zampini } 763148a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 763348a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7635ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76369566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76374e84afc0SStefano Zampini 763839cfb508SMark Adams /* set block sizes */ 763939cfb508SMark Adams A = product->A; 764039cfb508SMark Adams P = product->B; 764139cfb508SMark Adams switch (ptype) { 764239cfb508SMark Adams case MATPRODUCT_PtAP: 764358b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 764439cfb508SMark Adams break; 764539cfb508SMark Adams case MATPRODUCT_RARt: 764658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 764739cfb508SMark Adams break; 764839cfb508SMark Adams case MATPRODUCT_ABC: 764939cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 765039cfb508SMark Adams break; 765139cfb508SMark Adams case MATPRODUCT_AB: 765239cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 765339cfb508SMark Adams break; 765439cfb508SMark Adams case MATPRODUCT_AtB: 765558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 765639cfb508SMark Adams break; 765739cfb508SMark Adams case MATPRODUCT_ABt: 765858b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 765939cfb508SMark Adams break; 766039cfb508SMark Adams default: 766139cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 766239cfb508SMark Adams } 766339cfb508SMark Adams 76644e84afc0SStefano Zampini /* preallocate with COO data */ 76659566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76669566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76684e84afc0SStefano Zampini } 76694e84afc0SStefano Zampini 7670d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7671d71ae5a4SJacob Faibussowitsch { 76724e84afc0SStefano Zampini Mat_Product *product = mat->product; 76734e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76744e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7675abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76764e84afc0SStefano Zampini #else 76774e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76784e84afc0SStefano Zampini #endif 76794e84afc0SStefano Zampini 76804e84afc0SStefano Zampini PetscFunctionBegin; 76814e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76824e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 768348a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 768465e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7685abb89eb1SStefano Zampini switch (product->type) { 7686abb89eb1SStefano Zampini case MATPRODUCT_AB: 7687abb89eb1SStefano Zampini if (product->api_user) { 7688d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7690d0609cedSBarry Smith PetscOptionsEnd(); 7691abb89eb1SStefano Zampini } else { 7692d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76939566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7694d0609cedSBarry Smith PetscOptionsEnd(); 7695abb89eb1SStefano Zampini } 7696abb89eb1SStefano Zampini break; 7697abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7698abb89eb1SStefano Zampini if (product->api_user) { 7699d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 77009566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7701d0609cedSBarry Smith PetscOptionsEnd(); 7702abb89eb1SStefano Zampini } else { 7703d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 77049566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7705d0609cedSBarry Smith PetscOptionsEnd(); 7706abb89eb1SStefano Zampini } 7707abb89eb1SStefano Zampini break; 7708abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7709abb89eb1SStefano Zampini if (product->api_user) { 7710d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 77119566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7712d0609cedSBarry Smith PetscOptionsEnd(); 7713abb89eb1SStefano Zampini } else { 7714d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 77159566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7716d0609cedSBarry Smith PetscOptionsEnd(); 7717abb89eb1SStefano Zampini } 7718abb89eb1SStefano Zampini break; 7719d71ae5a4SJacob Faibussowitsch default: 7720d71ae5a4SJacob Faibussowitsch break; 7721abb89eb1SStefano Zampini } 7722abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7723abb89eb1SStefano Zampini } 77244e84afc0SStefano Zampini #endif 77254e84afc0SStefano Zampini if (match) { 77264e84afc0SStefano Zampini switch (product->type) { 77274e84afc0SStefano Zampini case MATPRODUCT_AB: 77284e84afc0SStefano Zampini case MATPRODUCT_AtB: 7729d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7730d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7731d71ae5a4SJacob Faibussowitsch break; 7732d71ae5a4SJacob Faibussowitsch default: 7733d71ae5a4SJacob Faibussowitsch break; 77344e84afc0SStefano Zampini } 77354e84afc0SStefano Zampini } 77364e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77379566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773981824310SBarry Smith } 774098921bdaSJacob Faibussowitsch 774198921bdaSJacob Faibussowitsch /* 774272833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 774372833a62Smarkadams4 774472833a62Smarkadams4 n - the number of block indices in cc[] 774572833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 774672833a62Smarkadams4 */ 7747d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7748d71ae5a4SJacob Faibussowitsch { 774972833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 775072833a62Smarkadams4 const PetscInt *idx; 775172833a62Smarkadams4 775272833a62Smarkadams4 PetscFunctionBegin; 775372833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 775472833a62Smarkadams4 if (nidx) { 775572833a62Smarkadams4 cnt = 0; 775672833a62Smarkadams4 cc[cnt] = idx[0] / bs; 775772833a62Smarkadams4 for (j = 1; j < nidx; j++) { 775872833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 775972833a62Smarkadams4 } 776072833a62Smarkadams4 } 776172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 776272833a62Smarkadams4 *n = cnt + 1; 77633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 776472833a62Smarkadams4 } 776572833a62Smarkadams4 776672833a62Smarkadams4 /* 776772833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 776872833a62Smarkadams4 776972833a62Smarkadams4 ncollapsed - the number of block indices 777072833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 777172833a62Smarkadams4 */ 7772d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7773d71ae5a4SJacob Faibussowitsch { 777472833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 777572833a62Smarkadams4 777672833a62Smarkadams4 PetscFunctionBegin; 777772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 777872833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 777972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 778072833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77819371c9d4SSatish Balay cprevtmp = cprev; 77829371c9d4SSatish Balay cprev = merged; 77839371c9d4SSatish Balay merged = cprevtmp; 778472833a62Smarkadams4 } 778572833a62Smarkadams4 *ncollapsed = nprev; 778672833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 778872833a62Smarkadams4 } 778972833a62Smarkadams4 77902d776b49SBarry Smith /* 779172833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 779272833a62Smarkadams4 779372833a62Smarkadams4 Input Parameter: 779472833a62Smarkadams4 . Amat - matrix 779572833a62Smarkadams4 - symmetrize - make the result symmetric 779672833a62Smarkadams4 + scale - scale with diagonal 779772833a62Smarkadams4 779872833a62Smarkadams4 Output Parameter: 779972833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 780072833a62Smarkadams4 780172833a62Smarkadams4 */ 7802e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7803d71ae5a4SJacob Faibussowitsch { 780472833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 780572833a62Smarkadams4 MPI_Comm comm; 780672833a62Smarkadams4 Mat Gmat; 780772833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 780872833a62Smarkadams4 Mat a, b, c; 780972833a62Smarkadams4 MatType jtype; 781072833a62Smarkadams4 781172833a62Smarkadams4 PetscFunctionBegin; 781272833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 781372833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 781472833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 781572833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 781672833a62Smarkadams4 nloc = (Iend - Istart) / bs; 781772833a62Smarkadams4 781872833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 781972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 782072833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 782172833a62Smarkadams4 782272833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 782372833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 782472833a62Smarkadams4 implementation */ 782572833a62Smarkadams4 if (bs > 1) { 782672833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 782772833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 782872833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 782972833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 783072833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 783172833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 783272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78332cf69117Smarkadams4 MatScalar *aa, val, *AA; 78342cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78356497c311SBarry Smith 78369371c9d4SSatish Balay if (isseqaij) { 78379371c9d4SSatish Balay a = Amat; 78389371c9d4SSatish Balay b = NULL; 78399371c9d4SSatish Balay } else { 784072833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78419371c9d4SSatish Balay a = d->A; 78429371c9d4SSatish Balay b = d->B; 784372833a62Smarkadams4 } 784472833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 784532603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 784672833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78472cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 784859ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78496497c311SBarry Smith 785059ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 785159ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 785259ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 785359ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 785472833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 785559ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 785659ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 785759ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 785859ee9f9fSPierre Jolivet else { 785959ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 786059ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 786159ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 786272833a62Smarkadams4 } 786359ee9f9fSPierre Jolivet } 786459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 786559ee9f9fSPierre Jolivet } 786659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 786772833a62Smarkadams4 if (!ok) { 786872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 786959ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 787072833a62Smarkadams4 goto old_bs; 787172833a62Smarkadams4 } 787272833a62Smarkadams4 } 787372833a62Smarkadams4 } 787472833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 787572833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 787672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78772cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 787872833a62Smarkadams4 // diag 787972833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 788072833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78816497c311SBarry Smith 788272833a62Smarkadams4 ai = aseq->i; 788372833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 788472833a62Smarkadams4 aj = aseq->j + ai[brow]; 78856497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 788672833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 788772833a62Smarkadams4 val = 0; 7888e02fb3cdSMark Adams if (index_size == 0) { 78896497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 789072833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78916497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 789272833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 789372833a62Smarkadams4 } 789472833a62Smarkadams4 } 7895e02fb3cdSMark Adams } else { // use (index,index) value if provided 78966497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78976497c311SBarry Smith PetscInt ii = index[iii]; 7898e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78996497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 79006497c311SBarry Smith PetscInt jj = index[jjj]; 7901cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7902e02fb3cdSMark Adams } 7903e02fb3cdSMark Adams } 7904e02fb3cdSMark Adams } 7905835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 790672833a62Smarkadams4 AA[k / bs] = val; 790772833a62Smarkadams4 } 790872833a62Smarkadams4 grow = Istart / bs + brow / bs; 790966521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 791072833a62Smarkadams4 } 791172833a62Smarkadams4 // off-diag 791272833a62Smarkadams4 if (ismpiaij) { 791372833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 791472833a62Smarkadams4 const PetscScalar *vals; 791572833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 79166497c311SBarry Smith 791772833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 791872833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 791972833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 79206497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 792159ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 792272833a62Smarkadams4 AA[k / bs] = 0; 792372833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 792472833a62Smarkadams4 } 792572833a62Smarkadams4 nc = ncols / bs; 792672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7927e02fb3cdSMark Adams if (index_size == 0) { 79286497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 792972833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79306497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79316497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7932835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 793372833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 793472833a62Smarkadams4 } 793572833a62Smarkadams4 } 793672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 793772833a62Smarkadams4 } 7938e02fb3cdSMark Adams } else { // use (index,index) value if provided 79396497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79406497c311SBarry Smith PetscInt ii = index[iii]; 7941e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79426497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79436497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79446497c311SBarry Smith PetscInt jj = index[jjj]; 7945e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7946e02fb3cdSMark Adams } 7947e02fb3cdSMark Adams } 7948e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7949e02fb3cdSMark Adams } 7950e02fb3cdSMark Adams } 795172833a62Smarkadams4 grow = Istart / bs + brow / bs; 795266521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 795372833a62Smarkadams4 } 795472833a62Smarkadams4 } 795572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 795672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79572cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 795872833a62Smarkadams4 } else { 795972833a62Smarkadams4 const PetscScalar *vals; 796072833a62Smarkadams4 const PetscInt *idx; 796172833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 796272833a62Smarkadams4 old_bs: 796372833a62Smarkadams4 /* 796472833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 796572833a62Smarkadams4 */ 796672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 796732603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 796872833a62Smarkadams4 if (isseqaij) { 796972833a62Smarkadams4 PetscInt max_d_nnz; 79706497c311SBarry Smith 797172833a62Smarkadams4 /* 797272833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 797372833a62Smarkadams4 */ 797472833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 797572833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 797672833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 797748a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 797872833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 797972833a62Smarkadams4 } else if (ismpiaij) { 798072833a62Smarkadams4 Mat Daij, Oaij; 798172833a62Smarkadams4 const PetscInt *garray; 798272833a62Smarkadams4 PetscInt max_d_nnz; 79836497c311SBarry Smith 798472833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 798572833a62Smarkadams4 /* 798672833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 798772833a62Smarkadams4 */ 798872833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 798972833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 799072833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 799148a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 799272833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 799372833a62Smarkadams4 /* 799472833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 799572833a62Smarkadams4 */ 799672833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 799772833a62Smarkadams4 o_nnz[jj] = 0; 799872833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 799972833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 800072833a62Smarkadams4 o_nnz[jj] += ncols; 800172833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 800272833a62Smarkadams4 } 800372833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 800472833a62Smarkadams4 } 800572833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 800672833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 800772833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 800872833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 800972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 801072833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 801172833a62Smarkadams4 PetscInt dest_row = Ii / bs; 80126497c311SBarry Smith 801372833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 801472833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 801572833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 801672833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 80176497c311SBarry Smith 801872833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 801972833a62Smarkadams4 } 802072833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 802172833a62Smarkadams4 } 802272833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 802372833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 802472833a62Smarkadams4 } 802572833a62Smarkadams4 } else { 80262d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80272d776b49SBarry Smith else { 80282d776b49SBarry Smith Gmat = Amat; 80292d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80302d776b49SBarry Smith } 80319371c9d4SSatish Balay if (isseqaij) { 80329371c9d4SSatish Balay a = Gmat; 80339371c9d4SSatish Balay b = NULL; 80349371c9d4SSatish Balay } else { 803572833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80369371c9d4SSatish Balay a = d->A; 80379371c9d4SSatish Balay b = d->B; 803872833a62Smarkadams4 } 80392d776b49SBarry Smith if (filter >= 0 || scale) { 80402d776b49SBarry Smith /* take absolute value of each entry */ 804172833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 804272833a62Smarkadams4 MatInfo info; 804372833a62Smarkadams4 PetscScalar *avals; 80446497c311SBarry Smith 804572833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 804672833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 804772833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 804872833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 804972833a62Smarkadams4 } 805072833a62Smarkadams4 } 80512d776b49SBarry Smith } 805272833a62Smarkadams4 if (symmetrize) { 8053b94d7dedSBarry Smith PetscBool isset, issym; 80546497c311SBarry Smith 8055b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8056b94d7dedSBarry Smith if (!isset || !issym) { 805772833a62Smarkadams4 Mat matTrans; 80586497c311SBarry Smith 805972833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80601fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 806172833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 806272833a62Smarkadams4 } 806372833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80642d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 806572833a62Smarkadams4 if (scale) { 806672833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 806772833a62Smarkadams4 Vec diag; 80686497c311SBarry Smith 806972833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 807072833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 807172833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 807272833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 807372833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 807472833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 807572833a62Smarkadams4 } 807672833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80772d776b49SBarry Smith if (filter >= 0) { 80782ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80792ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80802d776b49SBarry Smith } 808172833a62Smarkadams4 *a_Gmat = Gmat; 80823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 808372833a62Smarkadams4 } 808472833a62Smarkadams4 808572833a62Smarkadams4 /* 808698921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 808798921bdaSJacob Faibussowitsch */ 808898921bdaSJacob Faibussowitsch 808998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80909566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80919566063dSJacob Faibussowitsch #undef PetscCall 80929371c9d4SSatish Balay #define PetscCall(...) \ 80939371c9d4SSatish Balay do { \ 80945f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 809598921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 809698921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 809798921bdaSJacob Faibussowitsch return; \ 809898921bdaSJacob Faibussowitsch } \ 809998921bdaSJacob Faibussowitsch } while (0) 810098921bdaSJacob Faibussowitsch 810198921bdaSJacob Faibussowitsch #undef SETERRQ 81029371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 81039371c9d4SSatish Balay do { \ 810498921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 810598921bdaSJacob Faibussowitsch return; \ 810698921bdaSJacob Faibussowitsch } while (0) 810798921bdaSJacob Faibussowitsch 810898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 810998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 811098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 811198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 811298921bdaSJacob Faibussowitsch #else 811398921bdaSJacob Faibussowitsch #endif 8114d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8115d71ae5a4SJacob Faibussowitsch { 811698921bdaSJacob Faibussowitsch Mat mat = *mmat; 811798921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 811898921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 811998921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 812098921bdaSJacob Faibussowitsch PetscScalar value; 812198921bdaSJacob Faibussowitsch 812298921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 812398921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81245f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 812598921bdaSJacob Faibussowitsch { 812698921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 812798921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 812898921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 812998921bdaSJacob Faibussowitsch 813098921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 813198921bdaSJacob Faibussowitsch Mat A = aij->A; 813298921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 813398921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 813498921bdaSJacob Faibussowitsch MatScalar *aa; 8135f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 813698921bdaSJacob Faibussowitsch Mat B = aij->B; 813798921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 813898921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 813998921bdaSJacob Faibussowitsch MatScalar *ba; 814098921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 814198921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 814298921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 814398921bdaSJacob Faibussowitsch 814498921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 814598921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 814698921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 814798921bdaSJacob Faibussowitsch 814898921bdaSJacob Faibussowitsch PetscFunctionBegin; 81499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 815198921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 815298921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81536bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 815498921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 815598921bdaSJacob Faibussowitsch row = im[i] - rstart; 815698921bdaSJacob Faibussowitsch lastcol1 = -1; 815798921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 815898921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 815998921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 816098921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 816198921bdaSJacob Faibussowitsch low1 = 0; 816298921bdaSJacob Faibussowitsch high1 = nrow1; 816398921bdaSJacob Faibussowitsch lastcol2 = -1; 816498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 816598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 816698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 816798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 816898921bdaSJacob Faibussowitsch low2 = 0; 816998921bdaSJacob Faibussowitsch high2 = nrow2; 817098921bdaSJacob Faibussowitsch 817198921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 817298921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 817398921bdaSJacob Faibussowitsch else value = v[i + j * m]; 817498921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 817598921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 817698921bdaSJacob Faibussowitsch col = in[j] - cstart; 817798921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 817898921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 817998921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 818063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 818198921bdaSJacob Faibussowitsch } else { 818298921bdaSJacob Faibussowitsch if (mat->was_assembled) { 818348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 818498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8185eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 818698921bdaSJacob Faibussowitsch col--; 818798921bdaSJacob Faibussowitsch #else 818898921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 818998921bdaSJacob Faibussowitsch #endif 8190f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8191eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 819298921bdaSJacob Faibussowitsch col = in[j]; 819398921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 819498921bdaSJacob Faibussowitsch B = aij->B; 819598921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81969371c9d4SSatish Balay bimax = b->imax; 81979371c9d4SSatish Balay bi = b->i; 81989371c9d4SSatish Balay bilen = b->ilen; 81999371c9d4SSatish Balay bj = b->j; 820098921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 820198921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 820298921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 820398921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 820498921bdaSJacob Faibussowitsch low2 = 0; 820598921bdaSJacob Faibussowitsch high2 = nrow2; 820698921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 820798921bdaSJacob Faibussowitsch ba = b->a; 820898921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 820998921bdaSJacob Faibussowitsch } 821098921bdaSJacob Faibussowitsch } else col = in[j]; 821198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 821298921bdaSJacob Faibussowitsch } 821398921bdaSJacob Faibussowitsch } 821498921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 821598921bdaSJacob Faibussowitsch if (roworiented) { 82169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 821798921bdaSJacob Faibussowitsch } else { 82189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 821998921bdaSJacob Faibussowitsch } 822098921bdaSJacob Faibussowitsch } 822198921bdaSJacob Faibussowitsch } 82229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 822498921bdaSJacob Faibussowitsch } 822598921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 822698921bdaSJacob Faibussowitsch } 822772833a62Smarkadams4 822898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 822998921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 823098921bdaSJacob Faibussowitsch * original definitions */ 82319566063dSJacob Faibussowitsch #undef PetscCall 823298921bdaSJacob Faibussowitsch #undef SETERRQ 8233