1cb512458SBarry Smith #ifndef lint 2*aac3204fSLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.76 1995/09/11 01:54:12 curfman Exp curfman $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1744a69424SLois Curfman McInnes Mat_AIJ *B = (Mat_AIJ*) aij->B->data; 189e25ed09SBarry Smith int n = B->n,i; 1978b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 20464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 2178b31e54SBarry Smith PETSCMEMSET(aij->colmap,0,aij->N*sizeof(int)); 22abc0e9e4SLois Curfman McInnes for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1; 239e25ed09SBarry Smith return 0; 249e25ed09SBarry Smith } 259e25ed09SBarry Smith 262493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 272493cbb0SBarry Smith 2851c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 29299609e3SLois Curfman McInnes { 30299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 31299609e3SLois Curfman McInnes int ierr; 32299609e3SLois Curfman McInnes if (aij->numtids == 1) { 3351c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 34299609e3SLois Curfman McInnes } else 35bbb6d6a8SBarry Smith SETERRQ(1,"MatGetReordering_MPIAIJ: not yet supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 431eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 441eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 458a729477SBarry Smith 4607a0e7adSLois Curfman McInnes if (aij->insertmode != NOTSETVALUES && aij->insertmode != addv) { 47bbb6d6a8SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:You cannot mix inserts and adds"); 488a729477SBarry Smith } 491eb62cbbSBarry Smith aij->insertmode = addv; 508a729477SBarry Smith for ( i=0; i<m; i++ ) { 51bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 52bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 531eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 541eb62cbbSBarry Smith row = idxm[i] - rstart; 551eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 56bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 57bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 581eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 591eb62cbbSBarry Smith col = idxn[j] - cstart; 6078b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 611eb62cbbSBarry Smith } 621eb62cbbSBarry Smith else { 63d6dfbf8fSBarry Smith if (aij->assembled) { 64b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 659e25ed09SBarry Smith col = aij->colmap[idxn[j]] - 1; 66b7c46309SBarry Smith if (col < 0 && !((Mat_AIJ*)(aij->A->data))->nonew) { 672493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 682493cbb0SBarry Smith col = idxn[j]; 69d6dfbf8fSBarry Smith } 709e25ed09SBarry Smith } 719e25ed09SBarry Smith else col = idxn[j]; 7278b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 731eb62cbbSBarry Smith } 741eb62cbbSBarry Smith } 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith else { 77dbd7a890SLois Curfman McInnes ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv); 7878b31e54SBarry Smith CHKERRQ(ierr); 791eb62cbbSBarry Smith } 808a729477SBarry Smith } 818a729477SBarry Smith return 0; 828a729477SBarry Smith } 838a729477SBarry Smith 848a729477SBarry Smith /* 851eb62cbbSBarry Smith the assembly code is a lot like the code for vectors, we should 861eb62cbbSBarry Smith sometime derive a single assembly code that can be used for 871eb62cbbSBarry Smith either case. 888a729477SBarry Smith */ 898a729477SBarry Smith 90fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 918a729477SBarry Smith { 9244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 93d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 946abc6512SBarry Smith int numtids = aij->numtids, *owners = aij->rowners; 951eb62cbbSBarry Smith int mytid = aij->mytid; 961eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 976abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 985392566eSBarry Smith int tag = mat->tag, *owner,*starts,count,ierr; 991eb62cbbSBarry Smith InsertMode addv; 1001eb62cbbSBarry Smith Scalar *rvalues,*svalues; 1011eb62cbbSBarry Smith 1021eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 10328988994SBarry Smith MPI_Allreduce((void *) &aij->insertmode,(void *) &addv,1,MPI_INT, 1041eb62cbbSBarry Smith MPI_BOR,comm); 1059d00d63dSBarry Smith if (addv == (ADDVALUES|INSERTVALUES)) { 106bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1071eb62cbbSBarry Smith } 1081eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1091eb62cbbSBarry Smith 1101eb62cbbSBarry Smith /* first count number of contributors to each processor */ 11178b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 11278b31e54SBarry Smith PETSCMEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 11378b31e54SBarry Smith owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1141eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1151eb62cbbSBarry Smith idx = aij->stash.idx[i]; 1161eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 1171eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1181eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1198a729477SBarry Smith } 1208a729477SBarry Smith } 1218a729477SBarry Smith } 1221eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 1231eb62cbbSBarry Smith 1241eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 12578b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 1261eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 1271eb62cbbSBarry Smith nreceives = work[mytid]; 1281eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 1291eb62cbbSBarry Smith nmax = work[mytid]; 13078b31e54SBarry Smith PETSCFREE(work); 1311eb62cbbSBarry Smith 1321eb62cbbSBarry Smith /* post receives: 1331eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1341eb62cbbSBarry Smith (global index,value) we store the global index as a double 135d6dfbf8fSBarry Smith to simplify the message passing. 1361eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1371eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1381eb62cbbSBarry Smith this is a lot of wasted space. 1391eb62cbbSBarry Smith 1401eb62cbbSBarry Smith 1411eb62cbbSBarry Smith This could be done better. 1421eb62cbbSBarry Smith */ 14378b31e54SBarry Smith rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 14478b31e54SBarry Smith CHKPTRQ(rvalues); 14578b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request)); 14678b31e54SBarry Smith CHKPTRQ(recv_waits); 1471eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 148c60448a5SBarry Smith MPI_Irecv((void *)(rvalues+3*nmax*i),3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1491eb62cbbSBarry Smith comm,recv_waits+i); 1501eb62cbbSBarry Smith } 1511eb62cbbSBarry Smith 1521eb62cbbSBarry Smith /* do sends: 1531eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1541eb62cbbSBarry Smith the ith processor 1551eb62cbbSBarry Smith */ 15678b31e54SBarry Smith svalues = (Scalar *) PETSCMALLOC( 3*(aij->stash.n+1)*sizeof(Scalar) ); 15778b31e54SBarry Smith CHKPTRQ(svalues); 15878b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 15978b31e54SBarry Smith CHKPTRQ(send_waits); 16078b31e54SBarry Smith starts = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(starts); 1611eb62cbbSBarry Smith starts[0] = 0; 1621eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1641eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1651eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1661eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1671eb62cbbSBarry Smith } 16878b31e54SBarry Smith PETSCFREE(owner); 1691eb62cbbSBarry Smith starts[0] = 0; 1701eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1711eb62cbbSBarry Smith count = 0; 1721eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 1731eb62cbbSBarry Smith if (procs[i]) { 174c60448a5SBarry Smith MPI_Isend((void*)(svalues+3*starts[i]),3*nprocs[i],MPIU_SCALAR,i,tag, 1751eb62cbbSBarry Smith comm,send_waits+count++); 1761eb62cbbSBarry Smith } 1771eb62cbbSBarry Smith } 17878b31e54SBarry Smith PETSCFREE(starts); PETSCFREE(nprocs); 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith /* Free cache space */ 18178b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1821eb62cbbSBarry Smith 1831eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1841eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1851eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1861eb62cbbSBarry Smith aij->rmax = nmax; 1871eb62cbbSBarry Smith 1881eb62cbbSBarry Smith return 0; 1891eb62cbbSBarry Smith } 19044a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1911eb62cbbSBarry Smith 192fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1931eb62cbbSBarry Smith { 1941eb62cbbSBarry Smith int ierr; 19544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1961eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 1976abc6512SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n; 1982493cbb0SBarry Smith int row,col,other_disassembled; 1991eb62cbbSBarry Smith Scalar *values,val; 2001eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 2011eb62cbbSBarry Smith 2021eb62cbbSBarry Smith /* wait on receives */ 2031eb62cbbSBarry Smith while (count) { 204d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 2051eb62cbbSBarry Smith /* unpack receives into our local space */ 206d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 207c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2081eb62cbbSBarry Smith n = n/3; 2091eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2101eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2111eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2121eb62cbbSBarry Smith val = values[3*i+2]; 2131eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2141eb62cbbSBarry Smith col -= aij->cstart; 2151eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2161eb62cbbSBarry Smith } 2171eb62cbbSBarry Smith else { 218d6dfbf8fSBarry Smith if (aij->assembled) { 219b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 2209e25ed09SBarry Smith col = aij->colmap[col] - 1; 221b7c46309SBarry Smith if (col < 0 && !((Mat_AIJ*)(aij->A->data))->nonew) { 2222493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2232493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 224d6dfbf8fSBarry Smith } 2259e25ed09SBarry Smith } 2261eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2271eb62cbbSBarry Smith } 2281eb62cbbSBarry Smith } 2291eb62cbbSBarry Smith count--; 2301eb62cbbSBarry Smith } 23178b31e54SBarry Smith PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues); 2321eb62cbbSBarry Smith 2331eb62cbbSBarry Smith /* wait on sends */ 2341eb62cbbSBarry Smith if (aij->nsends) { 23578b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC( aij->nsends*sizeof(MPI_Status) ); 23678b31e54SBarry Smith CHKPTRQ(send_status); 2371eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 23878b31e54SBarry Smith PETSCFREE(send_status); 2391eb62cbbSBarry Smith } 24078b31e54SBarry Smith PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues); 2411eb62cbbSBarry Smith 24207a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 24378b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 24478b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2451eb62cbbSBarry Smith 2462493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2472493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 2482493cbb0SBarry Smith MPI_Allreduce((void *) &aij->assembled,(void *) &other_disassembled,1, 2492493cbb0SBarry Smith MPI_INT,MPI_PROD,mat->comm); 2502493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2512493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2522493cbb0SBarry Smith } 2532493cbb0SBarry Smith 2545e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 25578b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 256d6dfbf8fSBarry Smith aij->assembled = 1; 2575e42470aSBarry Smith } 25878b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25978b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2605e42470aSBarry Smith 2618a729477SBarry Smith return 0; 2628a729477SBarry Smith } 2638a729477SBarry Smith 2642ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2651eb62cbbSBarry Smith { 26644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 267dbd7a890SLois Curfman McInnes int ierr; 26878b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26978b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2701eb62cbbSBarry Smith return 0; 2711eb62cbbSBarry Smith } 2721eb62cbbSBarry Smith 2731eb62cbbSBarry Smith /* again this uses the same basic stratagy as in the assembly and 2741eb62cbbSBarry Smith scatter create routines, we should try to do it systemamatically 2751eb62cbbSBarry Smith if we can figure out the proper level of generality. */ 2761eb62cbbSBarry Smith 2771eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2781eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2791eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2801eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2811eb62cbbSBarry Smith routine. 2821eb62cbbSBarry Smith */ 28344a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2841eb62cbbSBarry Smith { 28544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 2861eb62cbbSBarry Smith int i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids; 2876abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 2881eb62cbbSBarry Smith int nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid; 2895392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 290d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 291d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2921eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2931eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2941eb62cbbSBarry Smith IS istmp; 2951eb62cbbSBarry Smith 296c8f67822SLois Curfman McInnes if (!l->assembled) 29778b31e54SBarry Smith SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix first"); 29878b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 29978b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 3001eb62cbbSBarry Smith 3011eb62cbbSBarry Smith /* first count number of contributors to each processor */ 30278b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 30378b31e54SBarry Smith PETSCMEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 30478b31e54SBarry Smith owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 3051eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3061eb62cbbSBarry Smith idx = rows[i]; 3071eb62cbbSBarry Smith found = 0; 3081eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 3091eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3101eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 3111eb62cbbSBarry Smith } 3121eb62cbbSBarry Smith } 313bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3141eb62cbbSBarry Smith } 3151eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 3161eb62cbbSBarry Smith 3171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 31878b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 3191eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 3201eb62cbbSBarry Smith nrecvs = work[mytid]; 3211eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 3221eb62cbbSBarry Smith nmax = work[mytid]; 32378b31e54SBarry Smith PETSCFREE(work); 3241eb62cbbSBarry Smith 3251eb62cbbSBarry Smith /* post receives: */ 32678b31e54SBarry Smith rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 32778b31e54SBarry Smith CHKPTRQ(rvalues); 32878b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request)); 32978b31e54SBarry Smith CHKPTRQ(recv_waits); 3301eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3311eb62cbbSBarry Smith MPI_Irecv((void *)(rvalues+nmax*i),nmax,MPI_INT,MPI_ANY_SOURCE,tag, 3321eb62cbbSBarry Smith comm,recv_waits+i); 3331eb62cbbSBarry Smith } 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith /* do sends: 3361eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3371eb62cbbSBarry Smith the ith processor 3381eb62cbbSBarry Smith */ 33978b31e54SBarry Smith svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 34078b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 34178b31e54SBarry Smith CHKPTRQ(send_waits); 34278b31e54SBarry Smith starts = (int *) PETSCMALLOC( (numtids+1)*sizeof(int) ); CHKPTRQ(starts); 3431eb62cbbSBarry Smith starts[0] = 0; 3441eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3451eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3461eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3471eb62cbbSBarry Smith } 3481eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3491eb62cbbSBarry Smith 3501eb62cbbSBarry Smith starts[0] = 0; 3511eb62cbbSBarry Smith for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3521eb62cbbSBarry Smith count = 0; 3531eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 3541eb62cbbSBarry Smith if (procs[i]) { 3551eb62cbbSBarry Smith MPI_Isend((void*)(svalues+starts[i]),nprocs[i],MPI_INT,i,tag, 3561eb62cbbSBarry Smith comm,send_waits+count++); 3571eb62cbbSBarry Smith } 3581eb62cbbSBarry Smith } 35978b31e54SBarry Smith PETSCFREE(starts); 3601eb62cbbSBarry Smith 3611eb62cbbSBarry Smith base = owners[mytid]; 3621eb62cbbSBarry Smith 3631eb62cbbSBarry Smith /* wait on receives */ 36478b31e54SBarry Smith lens = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3651eb62cbbSBarry Smith source = lens + nrecvs; 3661eb62cbbSBarry Smith count = nrecvs; slen = 0; 3671eb62cbbSBarry Smith while (count) { 368d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3691eb62cbbSBarry Smith /* unpack receives into our local space */ 3701eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 371d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 372d6dfbf8fSBarry Smith lens[imdex] = n; 3731eb62cbbSBarry Smith slen += n; 3741eb62cbbSBarry Smith count--; 3751eb62cbbSBarry Smith } 37678b31e54SBarry Smith PETSCFREE(recv_waits); 3771eb62cbbSBarry Smith 3781eb62cbbSBarry Smith /* move the data into the send scatter */ 37978b31e54SBarry Smith lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3801eb62cbbSBarry Smith count = 0; 3811eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3821eb62cbbSBarry Smith values = rvalues + i*nmax; 3831eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3841eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3851eb62cbbSBarry Smith } 3861eb62cbbSBarry Smith } 38778b31e54SBarry Smith PETSCFREE(rvalues); PETSCFREE(lens); 38878b31e54SBarry Smith PETSCFREE(owner); PETSCFREE(nprocs); 3891eb62cbbSBarry Smith 3901eb62cbbSBarry Smith /* actually zap the local rows */ 3916b5873e3SBarry Smith ierr = ISCreateSequential(MPI_COMM_SELF,slen,lrows,&istmp); 392464493b3SBarry Smith PLogObjectParent(A,istmp); 39378b31e54SBarry Smith CHKERRQ(ierr); PETSCFREE(lrows); 39478b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 39578b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 39678b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3971eb62cbbSBarry Smith 3981eb62cbbSBarry Smith /* wait on sends */ 3991eb62cbbSBarry Smith if (nsends) { 40078b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC( nsends*sizeof(MPI_Status) ); 40178b31e54SBarry Smith CHKPTRQ(send_status); 4021eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 40378b31e54SBarry Smith PETSCFREE(send_status); 4041eb62cbbSBarry Smith } 40578b31e54SBarry Smith PETSCFREE(send_waits); PETSCFREE(svalues); 4061eb62cbbSBarry Smith 4071eb62cbbSBarry Smith 4081eb62cbbSBarry Smith return 0; 4091eb62cbbSBarry Smith } 4101eb62cbbSBarry Smith 41144a69424SLois Curfman McInnes static int MatMult_MPIAIJ(Mat aijin,Vec xx,Vec yy) 4121eb62cbbSBarry Smith { 41344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 4141eb62cbbSBarry Smith int ierr; 41578b31e54SBarry Smith if (!aij->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first"); 41606be10caSBarry Smith ierr = VecScatterBegin(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 41778b31e54SBarry Smith CHKERRQ(ierr); 41878b31e54SBarry Smith ierr = MatMult(aij->A,xx,yy); CHKERRQ(ierr); 41906be10caSBarry Smith ierr = VecScatterEnd(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 42078b31e54SBarry Smith CHKERRQ(ierr); 42178b31e54SBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,yy,yy); CHKERRQ(ierr); 4221eb62cbbSBarry Smith return 0; 4231eb62cbbSBarry Smith } 4241eb62cbbSBarry Smith 42544a69424SLois Curfman McInnes static int MatMultAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 426da3a660dSBarry Smith { 42744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 428da3a660dSBarry Smith int ierr; 42978b31e54SBarry Smith if (!aij->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first"); 43006be10caSBarry Smith ierr = VecScatterBegin(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 43178b31e54SBarry Smith CHKERRQ(ierr); 43278b31e54SBarry Smith ierr = MatMultAdd(aij->A,xx,yy,zz); CHKERRQ(ierr); 43306be10caSBarry Smith ierr = VecScatterEnd(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx); 43478b31e54SBarry Smith CHKERRQ(ierr); 43578b31e54SBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,zz,zz); CHKERRQ(ierr); 436da3a660dSBarry Smith return 0; 437da3a660dSBarry Smith } 438da3a660dSBarry Smith 43944a69424SLois Curfman McInnes static int MatMultTrans_MPIAIJ(Mat aijin,Vec xx,Vec yy) 440da3a660dSBarry Smith { 44144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 442da3a660dSBarry Smith int ierr; 443da3a660dSBarry Smith 44444a69424SLois Curfman McInnes if (!aij->assembled) 44578b31e54SBarry Smith SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix first"); 446da3a660dSBarry Smith /* do nondiagonal part */ 44778b31e54SBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 44906be10caSBarry Smith ierr = VecScatterBegin(aij->lvec,yy,ADDVALUES, 45078b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 45278b31e54SBarry Smith ierr = MatMultTrans(aij->A,xx,yy); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 45606be10caSBarry Smith ierr = VecScatterEnd(aij->lvec,yy,ADDVALUES, 45778b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 46144a69424SLois Curfman McInnes static int MatMultTransAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 462da3a660dSBarry Smith { 46344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 464da3a660dSBarry Smith int ierr; 465da3a660dSBarry Smith 46644a69424SLois Curfman McInnes if (!aij->assembled) 46778b31e54SBarry Smith SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix first"); 468da3a660dSBarry Smith /* do nondiagonal part */ 46978b31e54SBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERRQ(ierr); 470da3a660dSBarry Smith /* send it on its way */ 47106be10caSBarry Smith ierr = VecScatterBegin(aij->lvec,zz,ADDVALUES, 47278b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 473da3a660dSBarry Smith /* do local part */ 47478b31e54SBarry Smith ierr = MatMultTransAdd(aij->A,xx,yy,zz); CHKERRQ(ierr); 475da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 476da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 477da3a660dSBarry Smith /* but is not perhaps always true. */ 47806be10caSBarry Smith ierr = VecScatterEnd(aij->lvec,zz,ADDVALUES, 47978b31e54SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr); 480da3a660dSBarry Smith return 0; 481da3a660dSBarry Smith } 482da3a660dSBarry Smith 4831eb62cbbSBarry Smith /* 4841eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4851eb62cbbSBarry Smith diagonal block 4861eb62cbbSBarry Smith */ 487d1710a03SLois Curfman McInnes static int MatGetDiagonal_MPIAIJ(Mat Ain,Vec v) 4881eb62cbbSBarry Smith { 48944a69424SLois Curfman McInnes Mat_MPIAIJ *A = (Mat_MPIAIJ *) Ain->data; 49078b31e54SBarry Smith if (!A->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix first"); 4911eb62cbbSBarry Smith return MatGetDiagonal(A->A,v); 4921eb62cbbSBarry Smith } 4931eb62cbbSBarry Smith 49444a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4951eb62cbbSBarry Smith { 4961eb62cbbSBarry Smith Mat mat = (Mat) obj; 49744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4981eb62cbbSBarry Smith int ierr; 499a5a9c739SBarry Smith #if defined(PETSC_LOG) 5006e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 501a5a9c739SBarry Smith #endif 50278b31e54SBarry Smith PETSCFREE(aij->rowners); 50378b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 50478b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 50578b31e54SBarry Smith if (aij->colmap) PETSCFREE(aij->colmap); 50678b31e54SBarry Smith if (aij->garray) PETSCFREE(aij->garray); 5071eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 5081eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 50978b31e54SBarry Smith PETSCFREE(aij); 510a5a9c739SBarry Smith PLogObjectDestroy(mat); 511a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 5121eb62cbbSBarry Smith return 0; 5131eb62cbbSBarry Smith } 5147857610eSBarry Smith #include "draw.h" 515b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 516ee50ffe9SBarry Smith 51744a69424SLois Curfman McInnes static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 5181eb62cbbSBarry Smith { 5191eb62cbbSBarry Smith Mat mat = (Mat) obj; 52044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 521f72585f2SLois Curfman McInnes int ierr, format; 522d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 5231eb62cbbSBarry Smith 52478b31e54SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix first"); 525154123eaSLois Curfman McInnes if (!viewer) { /* so that viewers may be used from debuggers */ 52621b0d8fbSLois Curfman McInnes viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 527154123eaSLois Curfman McInnes } 528ab254492SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 529d636dbe3SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 530f72585f2SLois Curfman McInnes if (vobj->cookie == VIEWER_COOKIE && format == FILE_FORMAT_INFO && 5319b94acceSBarry Smith (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER)) { 532f72585f2SLois Curfman McInnes /* do nothing for now */ 533f72585f2SLois Curfman McInnes } 5349b94acceSBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 535d636dbe3SBarry Smith FILE *fd; 536d636dbe3SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 5377f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 538d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 5391eb62cbbSBarry Smith aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5401eb62cbbSBarry Smith aij->cend); 54178b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 54278b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 543d13ab20cSBarry Smith fflush(fd); 5447f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 545d13ab20cSBarry Smith } 5469b94acceSBarry Smith else if ((vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) || 5477857610eSBarry Smith vobj->cookie == DRAW_COOKIE) { 54895373324SBarry Smith int numtids = aij->numtids, mytid = aij->mytid; 54995373324SBarry Smith if (numtids == 1) { 55078b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 55195373324SBarry Smith } 55295373324SBarry Smith else { 55395373324SBarry Smith /* assemble the entire matrix onto first processor. */ 55495373324SBarry Smith Mat A; 5552ee70a88SLois Curfman McInnes Mat_AIJ *Aloc; 5562eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 55795373324SBarry Smith Scalar *a; 5582ee70a88SLois Curfman McInnes 55995373324SBarry Smith if (!mytid) { 56095373324SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A); 56195373324SBarry Smith } 56295373324SBarry Smith else { 56395373324SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A); 56495373324SBarry Smith } 565464493b3SBarry Smith PLogObjectParent(mat,A); 56678b31e54SBarry Smith CHKERRQ(ierr); 56795373324SBarry Smith 56895373324SBarry Smith /* copy over the A part */ 5692ee70a88SLois Curfman McInnes Aloc = (Mat_AIJ*) aij->A->data; 5702ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 57195373324SBarry Smith row = aij->rstart; 572b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] += aij->cstart - 1;} 57395373324SBarry Smith for ( i=0; i<m; i++ ) { 57407a0e7adSLois Curfman McInnes ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERTVALUES); 57578b31e54SBarry Smith CHKERRQ(ierr); 57695373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 57795373324SBarry Smith } 5782ee70a88SLois Curfman McInnes aj = Aloc->j; 579b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] -= aij->cstart - 1;} 58095373324SBarry Smith 58195373324SBarry Smith /* copy over the B part */ 5822ee70a88SLois Curfman McInnes Aloc = (Mat_AIJ*) aij->B->data; 5832ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 58495373324SBarry Smith row = aij->rstart; 58578b31e54SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 586b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {cols[i] = aij->garray[aj[i]-1];} 58795373324SBarry Smith for ( i=0; i<m; i++ ) { 58807a0e7adSLois Curfman McInnes ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERTVALUES); 58978b31e54SBarry Smith CHKERRQ(ierr); 59095373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 59195373324SBarry Smith } 59278b31e54SBarry Smith PETSCFREE(ct); 59378b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 59478b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 59595373324SBarry Smith if (!mytid) { 59678b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 59795373324SBarry Smith } 59878b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 59995373324SBarry Smith } 60095373324SBarry Smith } 6011eb62cbbSBarry Smith return 0; 6021eb62cbbSBarry Smith } 6031eb62cbbSBarry Smith 60480b4ade8SLois Curfman McInnes extern int MatMarkDiag_AIJ(Mat); 6051eb62cbbSBarry Smith /* 6061eb62cbbSBarry Smith This has to provide several versions. 6071eb62cbbSBarry Smith 6081eb62cbbSBarry Smith 1) per sequential 6091eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6101eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 611d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6121eb62cbbSBarry Smith */ 613fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 614fc76ce87SLois Curfman McInnes double shift,int its,Vec xx) 6158a729477SBarry Smith { 61644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 617d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 61844a69424SLois Curfman McInnes Mat_AIJ *A = (Mat_AIJ *) AA->data, *B = (Mat_AIJ *)BB->data; 6196abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6206abc6512SBarry Smith int ierr,*idx, *diag; 6216abc6512SBarry Smith int n = mat->n, m = mat->m, i; 622da3a660dSBarry Smith Vec tt; 6238a729477SBarry Smith 62478b31e54SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix first"); 6251eb62cbbSBarry Smith 626d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 627d6dfbf8fSBarry Smith xs = x -1; /* shift by one for index start of 1 */ 628da3a660dSBarry Smith ls--; 62980b4ade8SLois Curfman McInnes if (!A->diag) {if ((ierr = MatMarkDiag_AIJ(AA))) return ierr;} 630d6dfbf8fSBarry Smith diag = A->diag; 631acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 63242f8db3fSLois Curfman McInnes SETERRQ(1,"MatRelax_MPIAIJ:Option not yet supported"); 633acb40c82SBarry Smith } 634da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 635da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 636da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 637da3a660dSBarry Smith 638da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 639da3a660dSBarry Smith 640da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 641da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 642da3a660dSBarry Smith is the relaxation factor. 643da3a660dSBarry Smith */ 64478b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 645464493b3SBarry Smith PLogObjectParent(matin,tt); 646da3a660dSBarry Smith VecGetArray(tt,&t); 647da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 648da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 649da3a660dSBarry Smith VecSet(&zero,mat->lvec); 65006be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 65178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 652da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 653da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 654da3a660dSBarry Smith idx = A->j + diag[i]; 655da3a660dSBarry Smith v = A->a + diag[i]; 656da3a660dSBarry Smith sum = b[i]; 657da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 658da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 659da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 660da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 661da3a660dSBarry Smith v = B->a + B->i[i] - 1; 662da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 663da3a660dSBarry Smith x[i] = omega*(sum/d); 664da3a660dSBarry Smith } 665edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 66678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 667da3a660dSBarry Smith 668da3a660dSBarry Smith /* t = b - (2*E - D)x */ 669da3a660dSBarry Smith v = A->a; 670da3a660dSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ - 1])*x[i]; } 671da3a660dSBarry Smith 672da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 673da3a660dSBarry Smith ts = t - 1; /* shifted by one for index start of a or mat->j*/ 674da3a660dSBarry Smith diag = A->diag; 675da3a660dSBarry Smith VecSet(&zero,mat->lvec); 67606be10caSBarry Smith ierr = VecPipelineBegin(tt,mat->lvec,INSERTVALUES,PIPELINEDOWN, 67778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 678da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 679da3a660dSBarry Smith n = diag[i] - A->i[i]; 680da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 681da3a660dSBarry Smith v = A->a + A->i[i] - 1; 682da3a660dSBarry Smith sum = t[i]; 683da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 684da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 685da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 686da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 687da3a660dSBarry Smith v = B->a + B->i[i] - 1; 688da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 689da3a660dSBarry Smith t[i] = omega*(sum/d); 690da3a660dSBarry Smith } 691edd2f0e1SBarry Smith ierr = VecPipelineEnd(tt,mat->lvec,INSERTVALUES,PIPELINEDOWN, 69278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 693da3a660dSBarry Smith /* x = x + t */ 694da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 695da3a660dSBarry Smith VecDestroy(tt); 696da3a660dSBarry Smith return 0; 697da3a660dSBarry Smith } 698da3a660dSBarry Smith 6991eb62cbbSBarry Smith 700d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 701da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 702da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 703da3a660dSBarry Smith } 704da3a660dSBarry Smith else { 70506be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 70678b31e54SBarry Smith CHKERRQ(ierr); 70706be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 70878b31e54SBarry Smith CHKERRQ(ierr); 709da3a660dSBarry Smith } 710d6dfbf8fSBarry Smith while (its--) { 711d6dfbf8fSBarry Smith /* go down through the rows */ 71206be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 71378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 714d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 715d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 716d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 717d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 718d6dfbf8fSBarry Smith sum = b[i]; 719d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 720d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 721d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 722d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 723d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 724d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 725d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 726d6dfbf8fSBarry Smith } 727edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 72878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 729d6dfbf8fSBarry Smith /* come up through the rows */ 73006be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 73178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 732d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 733d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 734d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 735d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 736d6dfbf8fSBarry Smith sum = b[i]; 737d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 738d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 739d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 740d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 741d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 742d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 743d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 744d6dfbf8fSBarry Smith } 745edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 74678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 747d6dfbf8fSBarry Smith } 748d6dfbf8fSBarry Smith } 749d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 750da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 751da3a660dSBarry Smith VecSet(&zero,mat->lvec); 75206be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 75378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 754da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 755da3a660dSBarry Smith n = diag[i] - A->i[i]; 756da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 757da3a660dSBarry Smith v = A->a + A->i[i] - 1; 758da3a660dSBarry Smith sum = b[i]; 759da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 760da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 761da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 762da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 763da3a660dSBarry Smith v = B->a + B->i[i] - 1; 764da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 765da3a660dSBarry Smith x[i] = omega*(sum/d); 766da3a660dSBarry Smith } 767edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 76878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 769da3a660dSBarry Smith its--; 770da3a660dSBarry Smith } 771d6dfbf8fSBarry Smith while (its--) { 77206be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 77378b31e54SBarry Smith CHKERRQ(ierr); 77406be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx); 77578b31e54SBarry Smith CHKERRQ(ierr); 77606be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 77778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 778d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 779d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 780d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 781d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 782d6dfbf8fSBarry Smith sum = b[i]; 783d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 784d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 785d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 786d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 787d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 788d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 789d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 790d6dfbf8fSBarry Smith } 791edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN, 79278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 793d6dfbf8fSBarry Smith } 794d6dfbf8fSBarry Smith } 795d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 796da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 797da3a660dSBarry Smith VecSet(&zero,mat->lvec); 79806be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 79978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 800da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 801da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 802da3a660dSBarry Smith idx = A->j + diag[i]; 803da3a660dSBarry Smith v = A->a + diag[i]; 804da3a660dSBarry Smith sum = b[i]; 805da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 806da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 807da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 808da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 809da3a660dSBarry Smith v = B->a + B->i[i] - 1; 810da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 811da3a660dSBarry Smith x[i] = omega*(sum/d); 812da3a660dSBarry Smith } 813edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 81478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 815da3a660dSBarry Smith its--; 816da3a660dSBarry Smith } 817d6dfbf8fSBarry Smith while (its--) { 81806be10caSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERDOWN, 81978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 82006be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERDOWN, 82178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 82206be10caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 82378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 824d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 825d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 826d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 827d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 828d6dfbf8fSBarry Smith sum = b[i]; 829d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 830d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 831d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 832d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 833d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 834d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 835d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 836d6dfbf8fSBarry Smith } 837edd2f0e1SBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP, 83878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 839d6dfbf8fSBarry Smith } 840d6dfbf8fSBarry Smith } 841d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 842da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 843da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 844da3a660dSBarry Smith } 84506be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 84678b31e54SBarry Smith CHKERRQ(ierr); 84706be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 84878b31e54SBarry Smith CHKERRQ(ierr); 849d6dfbf8fSBarry Smith while (its--) { 850d6dfbf8fSBarry Smith /* go down through the rows */ 851d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 852d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 853d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 854d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 855d6dfbf8fSBarry Smith sum = b[i]; 856d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 857d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 858d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 859d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 860d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 861d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 862d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 863d6dfbf8fSBarry Smith } 864d6dfbf8fSBarry Smith /* come up through the rows */ 865d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 866d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 867d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 868d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 869d6dfbf8fSBarry Smith sum = b[i]; 870d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 871d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 872d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 873d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 874d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 875d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 876d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 877d6dfbf8fSBarry Smith } 878d6dfbf8fSBarry Smith } 879d6dfbf8fSBarry Smith } 880d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 881da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 882da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 883da3a660dSBarry Smith } 88406be10caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 88578b31e54SBarry Smith CHKERRQ(ierr); 88606be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx); 88778b31e54SBarry Smith CHKERRQ(ierr); 888d6dfbf8fSBarry Smith while (its--) { 889d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 890d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 891d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 892d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 893d6dfbf8fSBarry Smith sum = b[i]; 894d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 895d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 896d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 897d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 898d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 899d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 900d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 901d6dfbf8fSBarry Smith } 902d6dfbf8fSBarry Smith } 903d6dfbf8fSBarry Smith } 904d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 905da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 906da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 907da3a660dSBarry Smith } 90806be10caSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL, 90978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 91006be10caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL, 91178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 912d6dfbf8fSBarry Smith while (its--) { 913d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 914d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 915d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 916d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 917d6dfbf8fSBarry Smith sum = b[i]; 918d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 919d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 920d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 921d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 922d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 923d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 924d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 925d6dfbf8fSBarry Smith } 926d6dfbf8fSBarry Smith } 927d6dfbf8fSBarry Smith } 9288a729477SBarry Smith return 0; 9298a729477SBarry Smith } 930a66be287SLois Curfman McInnes 931fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 932fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 933a66be287SLois Curfman McInnes { 934a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 935a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 936a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 937a66be287SLois Curfman McInnes 93878b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 93978b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 940a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 941a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 942a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 943a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 944a66be287SLois Curfman McInnes MPI_Allreduce((void *) isend,(void *) irecv,3,MPI_INT,MPI_MAX,matin->comm); 945a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 946a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 947a66be287SLois Curfman McInnes MPI_Allreduce((void *) isend,(void *) irecv,3,MPI_INT,MPI_SUM,matin->comm); 948a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 949a66be287SLois Curfman McInnes } 950a66be287SLois Curfman McInnes return 0; 951a66be287SLois Curfman McInnes } 952a66be287SLois Curfman McInnes 953299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 954299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 955299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 956299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 957299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 958299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 959299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 960299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 961299609e3SLois Curfman McInnes 962fc76ce87SLois Curfman McInnes static int MatSetOption_MPIAIJ(Mat aijin,MatOption op) 963c74985f6SBarry Smith { 96444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 965c74985f6SBarry Smith 966c74985f6SBarry Smith if (op == NO_NEW_NONZERO_LOCATIONS) { 967c74985f6SBarry Smith MatSetOption(aij->A,op); 968c74985f6SBarry Smith MatSetOption(aij->B,op); 969c74985f6SBarry Smith } 970c74985f6SBarry Smith else if (op == YES_NEW_NONZERO_LOCATIONS) { 971c74985f6SBarry Smith MatSetOption(aij->A,op); 972c74985f6SBarry Smith MatSetOption(aij->B,op); 973c74985f6SBarry Smith } 974bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 975bbb6d6a8SBarry Smith SETERRQ(1,"MatSetOption_MPIAIJ:Column oriented not supported"); 976c74985f6SBarry Smith return 0; 977c74985f6SBarry Smith } 978c74985f6SBarry Smith 979d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 980c74985f6SBarry Smith { 98144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 982c74985f6SBarry Smith *m = mat->M; *n = mat->N; 983c74985f6SBarry Smith return 0; 984c74985f6SBarry Smith } 985c74985f6SBarry Smith 986d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 987c74985f6SBarry Smith { 98844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 989b7c46309SBarry Smith *m = mat->m; *n = mat->N; 990c74985f6SBarry Smith return 0; 991c74985f6SBarry Smith } 992c74985f6SBarry Smith 993d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 994c74985f6SBarry Smith { 99544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 996c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 997c74985f6SBarry Smith return 0; 998c74985f6SBarry Smith } 999c74985f6SBarry Smith 100039e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 100139e00950SLois Curfman McInnes { 1002154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1003154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 1004154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1005154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 100639e00950SLois Curfman McInnes 100739e00950SLois Curfman McInnes if (row < rstart || row >= rend) 1008bbb6d6a8SBarry Smith SETERRQ(1,"MatGetRow_MPIAIJ:Currently you can get only local rows") 1009abc0e9e4SLois Curfman McInnes lrow = row - rstart; 101039e00950SLois Curfman McInnes 1011154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1012154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1013154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 101478b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 101578b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1016154123eaSLois Curfman McInnes nztot = nzA + nzB; 1017154123eaSLois Curfman McInnes 1018154123eaSLois Curfman McInnes if (v || idx) { 1019154123eaSLois Curfman McInnes if (nztot) { 1020154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1021299609e3SLois Curfman McInnes int imark; 102248b35521SBarry Smith if (mat->assembled) { 1023154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 102448b35521SBarry Smith } 1025154123eaSLois Curfman McInnes if (v) { 102678b31e54SBarry Smith *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 102739e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1028154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1029154123eaSLois Curfman McInnes else break; 1030154123eaSLois Curfman McInnes } 1031154123eaSLois Curfman McInnes imark = i; 1032154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1033299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1034154123eaSLois Curfman McInnes } 1035154123eaSLois Curfman McInnes if (idx) { 103678b31e54SBarry Smith *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1037154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1038154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1039154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1040154123eaSLois Curfman McInnes else break; 1041154123eaSLois Curfman McInnes } 1042154123eaSLois Curfman McInnes imark = i; 1043154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1044299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 104539e00950SLois Curfman McInnes } 104639e00950SLois Curfman McInnes } 104739e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1048154123eaSLois Curfman McInnes } 104939e00950SLois Curfman McInnes *nz = nztot; 105078b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 105178b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 105239e00950SLois Curfman McInnes return 0; 105339e00950SLois Curfman McInnes } 105439e00950SLois Curfman McInnes 105539e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 105639e00950SLois Curfman McInnes { 105778b31e54SBarry Smith if (idx) PETSCFREE(*idx); 105878b31e54SBarry Smith if (v) PETSCFREE(*v); 105939e00950SLois Curfman McInnes return 0; 106039e00950SLois Curfman McInnes } 106139e00950SLois Curfman McInnes 1062855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm) 1063855ac2c5SLois Curfman McInnes { 1064855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1065*aac3204fSLois Curfman McInnes int ierr, i, j, cstart = aij->cstart; 106604ca555eSLois Curfman McInnes double sum = 0.0; 106704ca555eSLois Curfman McInnes Mat_AIJ *amat = (Mat_AIJ*) aij->A->data, *bmat = (Mat_AIJ*) aij->B->data; 106804ca555eSLois Curfman McInnes Scalar *v; 106904ca555eSLois Curfman McInnes 107004ca555eSLois Curfman McInnes if (!aij->assembled) 107104ca555eSLois Curfman McInnes SETERRQ(1,"MatNorm_MPIAIJ: Cannot compute norm of unassembled matrix"); 1072855ac2c5SLois Curfman McInnes if (aij->numtids == 1) { 107314183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 107437fa93a5SLois Curfman McInnes } else { 107504ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 107604ca555eSLois Curfman McInnes v = amat->a; 107704ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 107804ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 107904ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 108004ca555eSLois Curfman McInnes #else 108104ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 108204ca555eSLois Curfman McInnes #endif 108304ca555eSLois Curfman McInnes } 108404ca555eSLois Curfman McInnes v = bmat->a; 108504ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 108604ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 108704ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 108804ca555eSLois Curfman McInnes #else 108904ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 109004ca555eSLois Curfman McInnes #endif 109104ca555eSLois Curfman McInnes } 109204ca555eSLois Curfman McInnes MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 109304ca555eSLois Curfman McInnes *norm = sqrt(*norm); 109404ca555eSLois Curfman McInnes } 109504ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 109604ca555eSLois Curfman McInnes double *tmp, *tmp2; 109704ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 109804ca555eSLois Curfman McInnes tmp = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp); 109904ca555eSLois Curfman McInnes tmp2 = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 110004ca555eSLois Curfman McInnes PETSCMEMSET(tmp,0,aij->N*sizeof(double)); 110104ca555eSLois Curfman McInnes *norm = 0.0; 110204ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 110304ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 110404ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 11056d531a12SLois Curfman McInnes tmp[cstart + *jj++ - 1] += abs(*v++); 110604ca555eSLois Curfman McInnes #else 11076d531a12SLois Curfman McInnes tmp[cstart + *jj++ - 1] += fabs(*v++); 110804ca555eSLois Curfman McInnes #endif 110904ca555eSLois Curfman McInnes } 111004ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 111104ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 111204ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 111304ca555eSLois Curfman McInnes tmp[garray[*jj++ - 1]] += abs(*v++); 111404ca555eSLois Curfman McInnes #else 111504ca555eSLois Curfman McInnes tmp[garray[*jj++ - 1]] += fabs(*v++); 111604ca555eSLois Curfman McInnes #endif 111704ca555eSLois Curfman McInnes } 111804ca555eSLois Curfman McInnes MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 111904ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 112004ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 112104ca555eSLois Curfman McInnes } 112204ca555eSLois Curfman McInnes PETSCFREE(tmp); PETSCFREE(tmp2); 112304ca555eSLois Curfman McInnes } 112404ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 112504ca555eSLois Curfman McInnes double normtemp = 0.0; 112604ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 112704ca555eSLois Curfman McInnes v = amat->a + amat->i[j] - 1; 112804ca555eSLois Curfman McInnes sum = 0.0; 112904ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 113004ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 113104ca555eSLois Curfman McInnes sum += abs(*v); v++; 113204ca555eSLois Curfman McInnes #else 113304ca555eSLois Curfman McInnes sum += fabs(*v); v++; 113404ca555eSLois Curfman McInnes #endif 113504ca555eSLois Curfman McInnes } 113604ca555eSLois Curfman McInnes v = bmat->a + bmat->i[j] - 1; 113704ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 113804ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 113904ca555eSLois Curfman McInnes sum += abs(*v); v++; 114004ca555eSLois Curfman McInnes #else 114104ca555eSLois Curfman McInnes sum += fabs(*v); v++; 114204ca555eSLois Curfman McInnes #endif 114304ca555eSLois Curfman McInnes } 114404ca555eSLois Curfman McInnes if (sum > normtemp) normtemp = sum; 114504ca555eSLois Curfman McInnes MPI_Allreduce((void*)&normtemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 114604ca555eSLois Curfman McInnes } 114704ca555eSLois Curfman McInnes } 114804ca555eSLois Curfman McInnes else { 114904ca555eSLois Curfman McInnes SETERRQ(1,"MatNorm_MPIRow:No support for the two norm"); 115004ca555eSLois Curfman McInnes } 115137fa93a5SLois Curfman McInnes } 1152855ac2c5SLois Curfman McInnes return 0; 1153855ac2c5SLois Curfman McInnes } 1154855ac2c5SLois Curfman McInnes 11550de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1156b7c46309SBarry Smith { 1157b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1158b7c46309SBarry Smith int ierr; 1159b7c46309SBarry Smith Mat B; 1160b7c46309SBarry Smith Mat_AIJ *Aloc; 1161b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1162b7c46309SBarry Smith Scalar *array; 1163b7c46309SBarry Smith 11640de55854SLois Curfman McInnes if (!matout && M != N) SETERRQ(1, 11650de55854SLois Curfman McInnes "MatTranspose_MPIAIJ: Cannot transpose rectangular matrix in place"); 1166b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1167b7c46309SBarry Smith CHKERRQ(ierr); 1168b7c46309SBarry Smith 1169b7c46309SBarry Smith /* copy over the A part */ 1170b7c46309SBarry Smith Aloc = (Mat_AIJ*) a->A->data; 1171b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1172b7c46309SBarry Smith row = a->rstart; 1173b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] += a->cstart - 1;} 1174b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1175b7c46309SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERTVALUES); 1176b7c46309SBarry Smith CHKERRQ(ierr); 1177b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1178b7c46309SBarry Smith } 1179b7c46309SBarry Smith aj = Aloc->j; 1180b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {aj[i] -= a->cstart - 1;} 1181b7c46309SBarry Smith 1182b7c46309SBarry Smith /* copy over the B part */ 1183b7c46309SBarry Smith Aloc = (Mat_AIJ*) a->B->data; 1184b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1185b7c46309SBarry Smith row = a->rstart; 1186b7c46309SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 1187b7c46309SBarry Smith for ( i=0; i<ai[m]-1; i++ ) {cols[i] = a->garray[aj[i]-1];} 1188b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1189b7c46309SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERTVALUES); 1190b7c46309SBarry Smith CHKERRQ(ierr); 1191b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1192b7c46309SBarry Smith } 1193b7c46309SBarry Smith PETSCFREE(ct); 1194b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1195b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 11960de55854SLois Curfman McInnes if (matout) { 11970de55854SLois Curfman McInnes *matout = B; 11980de55854SLois Curfman McInnes } else { 11990de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 12000de55854SLois Curfman McInnes PETSCFREE(a->rowners); 12010de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 12020de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 12030de55854SLois Curfman McInnes if (a->colmap) PETSCFREE(a->colmap); 12040de55854SLois Curfman McInnes if (a->garray) PETSCFREE(a->garray); 12050de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 12060de55854SLois Curfman McInnes if (a->Mvctx) VecScatterCtxDestroy(a->Mvctx); 12070de55854SLois Curfman McInnes PETSCFREE(a); 12080de55854SLois Curfman McInnes PETSCMEMCPY(A,B,sizeof(struct _Mat)); 12090de55854SLois Curfman McInnes PETSCHEADERDESTROY(B); 12100de55854SLois Curfman McInnes } 1211b7c46309SBarry Smith return 0; 1212b7c46309SBarry Smith } 1213b7c46309SBarry Smith 1214fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1215ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *); 1216d6dfbf8fSBarry Smith 12178a729477SBarry Smith /* -------------------------------------------------------------------*/ 12182ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 121939e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 122044a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 122144a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1222299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1223299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1224299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 122544a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1226b7c46309SBarry Smith MatTranspose_MPIAIJ, 1227a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1228855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1229ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 12301eb62cbbSBarry Smith 0, 1231299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1232299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1233299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1234d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1235299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1236ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 12378a729477SBarry Smith 12388a729477SBarry Smith /*@ 1239ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1240ff756334SLois Curfman McInnes (the default parallel PETSc format). 12418a729477SBarry Smith 12428a729477SBarry Smith Input Parameters: 12431eb62cbbSBarry Smith . comm - MPI communicator 12447d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 12457d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 12467d3e4905SLois Curfman McInnes if N is given) 12477d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 12487d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 12497d3e4905SLois Curfman McInnes if n is given) 1250ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1251ff756334SLois Curfman McInnes (same for all local rows) 1252ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1253ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1254ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1255ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1256ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1257ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1258ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 12598a729477SBarry Smith 1260ff756334SLois Curfman McInnes Output Parameter: 12618a729477SBarry Smith . newmat - the matrix 12628a729477SBarry Smith 1263ff756334SLois Curfman McInnes Notes: 1264ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1265ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 1266ff756334SLois Curfman McInnes storage. That is, the stored row and column indices begin at 1267ab693e5aSLois Curfman McInnes one, not zero. See the users manual for further details. 1268ff756334SLois Curfman McInnes 1269ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1270ff756334SLois Curfman McInnes (possibly both). 1271ff756334SLois Curfman McInnes 1272e0245417SLois Curfman McInnes Storage Information: 1273e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1274e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1275e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1276e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1277e0245417SLois Curfman McInnes 1278e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1279e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1280e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1281e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1282e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1283ff756334SLois Curfman McInnes 1284dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1285ff756334SLois Curfman McInnes 1286dbd7a890SLois Curfman McInnes .seealso: MatCreate(), MatCreateSequentialAIJ(), MatSetValues() 12878a729477SBarry Smith @*/ 12881eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 12891eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 12908a729477SBarry Smith { 12918a729477SBarry Smith Mat mat; 129244a69424SLois Curfman McInnes Mat_MPIAIJ *aij; 12936abc6512SBarry Smith int ierr, i,sum[2],work[2]; 12948a729477SBarry Smith *newmat = 0; 129544a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1296a5a9c739SBarry Smith PLogObjectCreate(mat); 129778b31e54SBarry Smith mat->data = (void *) (aij = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(aij); 12988a729477SBarry Smith mat->ops = &MatOps; 129944a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 130044a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 13018a729477SBarry Smith mat->factor = 0; 1302d6dfbf8fSBarry Smith 130307a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 13041eb62cbbSBarry Smith MPI_Comm_rank(comm,&aij->mytid); 13051eb62cbbSBarry Smith MPI_Comm_size(comm,&aij->numtids); 13061eb62cbbSBarry Smith 1307dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 13081eb62cbbSBarry Smith work[0] = m; work[1] = n; 1309d6dfbf8fSBarry Smith MPI_Allreduce((void *) work,(void *) sum,2,MPI_INT,MPI_SUM,comm ); 1310dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1311dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 13121eb62cbbSBarry Smith } 1313dbd7a890SLois Curfman McInnes if (m == PETSC_DECIDE) 1314dbd7a890SLois Curfman McInnes {m = M/aij->numtids + ((M % aij->numtids) > aij->mytid);} 1315dbd7a890SLois Curfman McInnes if (n == PETSC_DECIDE) 1316dbd7a890SLois Curfman McInnes {n = N/aij->numtids + ((N % aij->numtids) > aij->mytid);} 13178a729477SBarry Smith aij->m = m; 13188a729477SBarry Smith aij->n = n; 13191eb62cbbSBarry Smith aij->N = N; 13201eb62cbbSBarry Smith aij->M = M; 13211eb62cbbSBarry Smith 13221eb62cbbSBarry Smith /* build local table of row and column ownerships */ 132378b31e54SBarry Smith aij->rowners = (int *) PETSCMALLOC(2*(aij->numtids+2)*sizeof(int)); 132478b31e54SBarry Smith CHKPTRQ(aij->rowners); 1325464493b3SBarry Smith PLogObjectMemory(mat,2*(aij->numtids+2)*sizeof(int)+sizeof(struct _Mat)+ 1326464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 13271eb62cbbSBarry Smith aij->cowners = aij->rowners + aij->numtids + 1; 13281eb62cbbSBarry Smith MPI_Allgather(&m,1,MPI_INT,aij->rowners+1,1,MPI_INT,comm); 13291eb62cbbSBarry Smith aij->rowners[0] = 0; 13301eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 13311eb62cbbSBarry Smith aij->rowners[i] += aij->rowners[i-1]; 13328a729477SBarry Smith } 13331eb62cbbSBarry Smith aij->rstart = aij->rowners[aij->mytid]; 13341eb62cbbSBarry Smith aij->rend = aij->rowners[aij->mytid+1]; 13351eb62cbbSBarry Smith MPI_Allgather(&n,1,MPI_INT,aij->cowners+1,1,MPI_INT,comm); 13361eb62cbbSBarry Smith aij->cowners[0] = 0; 13371eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 13381eb62cbbSBarry Smith aij->cowners[i] += aij->cowners[i-1]; 13398a729477SBarry Smith } 13401eb62cbbSBarry Smith aij->cstart = aij->cowners[aij->mytid]; 13411eb62cbbSBarry Smith aij->cend = aij->cowners[aij->mytid+1]; 13428a729477SBarry Smith 13436b5873e3SBarry Smith ierr = MatCreateSequentialAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&aij->A); 134478b31e54SBarry Smith CHKERRQ(ierr); 1345a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 13466b5873e3SBarry Smith ierr = MatCreateSequentialAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&aij->B); 134778b31e54SBarry Smith CHKERRQ(ierr); 1348a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 13498a729477SBarry Smith 13501eb62cbbSBarry Smith /* build cache for off array entries formed */ 135178b31e54SBarry Smith ierr = StashBuild_Private(&aij->stash); CHKERRQ(ierr); 13529e25ed09SBarry Smith aij->colmap = 0; 13539e25ed09SBarry Smith aij->garray = 0; 13548a729477SBarry Smith 13551eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 13561eb62cbbSBarry Smith aij->lvec = 0; 13571eb62cbbSBarry Smith aij->Mvctx = 0; 1358d6dfbf8fSBarry Smith aij->assembled = 0; 13598a729477SBarry Smith 1360d6dfbf8fSBarry Smith *newmat = mat; 1361d6dfbf8fSBarry Smith return 0; 1362d6dfbf8fSBarry Smith } 1363c74985f6SBarry Smith 1364ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat) 1365d6dfbf8fSBarry Smith { 1366d6dfbf8fSBarry Smith Mat mat; 136744a69424SLois Curfman McInnes Mat_MPIAIJ *aij,*oldmat = (Mat_MPIAIJ *) matin->data; 13682ee70a88SLois Curfman McInnes int ierr, len; 1369d6dfbf8fSBarry Smith *newmat = 0; 1370d6dfbf8fSBarry Smith 1371bbb6d6a8SBarry Smith if (!oldmat->assembled) 1372bbb6d6a8SBarry Smith SETERRQ(1,"MatCopyPrivate_MPIAIJ:Cannot copy unassembled matrix"); 137344a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1374a5a9c739SBarry Smith PLogObjectCreate(mat); 137578b31e54SBarry Smith mat->data = (void *) (aij = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(aij); 1376d6dfbf8fSBarry Smith mat->ops = &MatOps; 137744a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 137844a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1379d6dfbf8fSBarry Smith mat->factor = matin->factor; 1380d6dfbf8fSBarry Smith 1381d6dfbf8fSBarry Smith aij->m = oldmat->m; 1382d6dfbf8fSBarry Smith aij->n = oldmat->n; 1383d6dfbf8fSBarry Smith aij->M = oldmat->M; 1384d6dfbf8fSBarry Smith aij->N = oldmat->N; 1385d6dfbf8fSBarry Smith 1386d6dfbf8fSBarry Smith aij->assembled = 1; 1387d6dfbf8fSBarry Smith aij->rstart = oldmat->rstart; 1388d6dfbf8fSBarry Smith aij->rend = oldmat->rend; 1389d6dfbf8fSBarry Smith aij->cstart = oldmat->cstart; 1390d6dfbf8fSBarry Smith aij->cend = oldmat->cend; 1391d6dfbf8fSBarry Smith aij->numtids = oldmat->numtids; 1392d6dfbf8fSBarry Smith aij->mytid = oldmat->mytid; 139307a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 1394d6dfbf8fSBarry Smith 139578b31e54SBarry Smith aij->rowners = (int *) PETSCMALLOC( (aij->numtids+1)*sizeof(int) ); 139678b31e54SBarry Smith CHKPTRQ(aij->rowners); 1397464493b3SBarry Smith PLogObjectMemory(mat,(aij->numtids+1)*sizeof(int)+sizeof(struct _Mat)+ 1398464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 139978b31e54SBarry Smith PETSCMEMCPY(aij->rowners,oldmat->rowners,(aij->numtids+1)*sizeof(int)); 140078b31e54SBarry Smith ierr = StashInitialize_Private(&aij->stash); CHKERRQ(ierr); 14012ee70a88SLois Curfman McInnes if (oldmat->colmap) { 140278b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC( (aij->N)*sizeof(int) ); 140378b31e54SBarry Smith CHKPTRQ(aij->colmap); 1404464493b3SBarry Smith PLogObjectMemory(mat,(aij->N)*sizeof(int)); 140578b31e54SBarry Smith PETSCMEMCPY(aij->colmap,oldmat->colmap,(aij->N)*sizeof(int)); 14062ee70a88SLois Curfman McInnes } else aij->colmap = 0; 14072ee70a88SLois Curfman McInnes if (oldmat->garray && (len = ((Mat_AIJ *) (oldmat->B->data))->n)) { 140878b31e54SBarry Smith aij->garray = (int *) PETSCMALLOC(len*sizeof(int) ); CHKPTRQ(aij->garray); 1409464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 141078b31e54SBarry Smith PETSCMEMCPY(aij->garray,oldmat->garray,len*sizeof(int)); 14112ee70a88SLois Curfman McInnes } else aij->garray = 0; 1412d6dfbf8fSBarry Smith 141378b31e54SBarry Smith ierr = VecDuplicate(oldmat->lvec,&aij->lvec); CHKERRQ(ierr); 1414a5a9c739SBarry Smith PLogObjectParent(mat,aij->lvec); 141578b31e54SBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&aij->Mvctx); CHKERRQ(ierr); 1416a5a9c739SBarry Smith PLogObjectParent(mat,aij->Mvctx); 141778b31e54SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&aij->A); CHKERRQ(ierr); 1418a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 141978b31e54SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&aij->B); CHKERRQ(ierr); 1420a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 14218a729477SBarry Smith *newmat = mat; 14228a729477SBarry Smith return 0; 14238a729477SBarry Smith } 1424