1cb512458SBarry Smith #ifndef lint 2*abc0e9e4SLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.17 1995/03/25 01:26:53 bsmith Exp curfman $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 91eb62cbbSBarry Smith #define CHUNCKSIZE 100 101eb62cbbSBarry Smith /* 111eb62cbbSBarry Smith This is a simple minded stash. Do a linear search to determine if 121eb62cbbSBarry Smith in stash, if not add to end. 131eb62cbbSBarry Smith */ 141eb62cbbSBarry Smith static int StashValues(Stash *stash,int row,int n, int *idxn, 151eb62cbbSBarry Smith Scalar *values,InsertMode addv) 168a729477SBarry Smith { 171eb62cbbSBarry Smith int i,j,N = stash->n,found,*n_idx, *n_idy; 181eb62cbbSBarry Smith Scalar val,*n_array; 198a729477SBarry Smith 201eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 211eb62cbbSBarry Smith found = 0; 221eb62cbbSBarry Smith val = *values++; 238a729477SBarry Smith for ( j=0; j<N; j++ ) { 241eb62cbbSBarry Smith if ( stash->idx[j] == row && stash->idy[j] == idxn[i]) { 251eb62cbbSBarry Smith /* found a match */ 261eb62cbbSBarry Smith if (addv == AddValues) stash->array[j] += val; 271eb62cbbSBarry Smith else stash->array[j] = val; 281eb62cbbSBarry Smith found = 1; 298a729477SBarry Smith break; 308a729477SBarry Smith } 318a729477SBarry Smith } 321eb62cbbSBarry Smith if (!found) { /* not found so add to end */ 331eb62cbbSBarry Smith if ( stash->n == stash->nmax ) { 341eb62cbbSBarry Smith /* allocate a larger stash */ 351eb62cbbSBarry Smith n_array = (Scalar *) MALLOC( (stash->nmax + CHUNCKSIZE)*( 361eb62cbbSBarry Smith 2*sizeof(int) + sizeof(Scalar))); 371eb62cbbSBarry Smith CHKPTR(n_array); 381eb62cbbSBarry Smith n_idx = (int *) (n_array + stash->nmax + CHUNCKSIZE); 391eb62cbbSBarry Smith n_idy = (int *) (n_idx + stash->nmax + CHUNCKSIZE); 401eb62cbbSBarry Smith MEMCPY(n_array,stash->array,stash->nmax*sizeof(Scalar)); 411eb62cbbSBarry Smith MEMCPY(n_idx,stash->idx,stash->nmax*sizeof(int)); 421eb62cbbSBarry Smith MEMCPY(n_idy,stash->idy,stash->nmax*sizeof(int)); 431eb62cbbSBarry Smith if (stash->array) FREE(stash->array); 441eb62cbbSBarry Smith stash->array = n_array; stash->idx = n_idx; stash->idy = n_idy; 451eb62cbbSBarry Smith stash->nmax += CHUNCKSIZE; 461eb62cbbSBarry Smith } 471eb62cbbSBarry Smith stash->array[stash->n] = val; 481eb62cbbSBarry Smith stash->idx[stash->n] = row; 491eb62cbbSBarry Smith stash->idy[stash->n++] = idxn[i]; 501eb62cbbSBarry Smith } 518a729477SBarry Smith } 528a729477SBarry Smith return 0; 538a729477SBarry Smith } 548a729477SBarry Smith 559e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 569e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 579e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 589e25ed09SBarry Smith length of colmap equals the global matrix length. 599e25ed09SBarry Smith */ 609e25ed09SBarry Smith static int CreateColmap(Mat mat) 619e25ed09SBarry Smith { 6244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 6344a69424SLois Curfman McInnes Mat_AIJ *B = (Mat_AIJ*) aij->B->data; 649e25ed09SBarry Smith int n = B->n,i; 659e25ed09SBarry Smith aij->colmap = (int *) MALLOC( aij->N*sizeof(int) ); CHKPTR(aij->colmap); 669e25ed09SBarry Smith MEMSET(aij->colmap,0,aij->N*sizeof(int)); 67*abc0e9e4SLois Curfman McInnes for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1; 689e25ed09SBarry Smith return 0; 699e25ed09SBarry Smith } 709e25ed09SBarry Smith 7144a69424SLois Curfman McInnes static int MatInsertValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 721eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 738a729477SBarry Smith { 7444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 751eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 761eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 778a729477SBarry Smith 781eb62cbbSBarry Smith if (aij->insertmode != NotSetValues && aij->insertmode != addv) { 791eb62cbbSBarry Smith SETERR(1,"You cannot mix inserts and adds"); 808a729477SBarry Smith } 811eb62cbbSBarry Smith aij->insertmode = addv; 828a729477SBarry Smith for ( i=0; i<m; i++ ) { 83da3a660dSBarry Smith if (idxm[i] < 0) SETERR(1,"Negative row index"); 84da3a660dSBarry Smith if (idxm[i] >= aij->M) SETERR(1,"Row index too large"); 851eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 861eb62cbbSBarry Smith row = idxm[i] - rstart; 871eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 88da3a660dSBarry Smith if (idxn[j] < 0) SETERR(1,"Negative column index"); 89da3a660dSBarry Smith if (idxn[j] >= aij->N) SETERR(1,"Column index too large"); 901eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 911eb62cbbSBarry Smith col = idxn[j] - cstart; 921eb62cbbSBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERR(ierr); 931eb62cbbSBarry Smith } 941eb62cbbSBarry Smith else { 95d6dfbf8fSBarry Smith if (aij->assembled) { 969e25ed09SBarry Smith if (!aij->colmap) {ierr = CreateColmap(mat); CHKERR(ierr);} 979e25ed09SBarry Smith col = aij->colmap[idxn[j]] - 1; 989e25ed09SBarry Smith if (col < 0) { 999e25ed09SBarry Smith SETERR(1,"Cannot insert new off diagonal block nonzero in\ 1009e25ed09SBarry Smith already\ 101d6dfbf8fSBarry Smith assembled matrix. Contact petsc-maint@mcs.anl.gov\ 102d6dfbf8fSBarry Smith if your need this feature"); 103d6dfbf8fSBarry Smith } 1049e25ed09SBarry Smith } 1059e25ed09SBarry Smith else col = idxn[j]; 1061eb62cbbSBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERR(ierr); 1071eb62cbbSBarry Smith } 1081eb62cbbSBarry Smith } 1091eb62cbbSBarry Smith } 1101eb62cbbSBarry Smith else { 1111eb62cbbSBarry Smith ierr = StashValues(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERR(ierr); 1121eb62cbbSBarry Smith } 1138a729477SBarry Smith } 1148a729477SBarry Smith return 0; 1158a729477SBarry Smith } 1168a729477SBarry Smith 1178a729477SBarry Smith /* 1181eb62cbbSBarry Smith the assembly code is alot like the code for vectors, we should 1191eb62cbbSBarry Smith sometime derive a single assembly code that can be used for 1201eb62cbbSBarry Smith either case. 1218a729477SBarry Smith */ 1228a729477SBarry Smith 12344a69424SLois Curfman McInnes static int MatBeginAssemble_MPIAIJ(Mat mat) 1248a729477SBarry Smith { 12544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 126d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 1276abc6512SBarry Smith int numtids = aij->numtids, *owners = aij->rowners; 1281eb62cbbSBarry Smith int mytid = aij->mytid; 1291eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 1306abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 1311eb62cbbSBarry Smith int tag = 50, *owner,*starts,count; 1321eb62cbbSBarry Smith InsertMode addv; 1331eb62cbbSBarry Smith Scalar *rvalues,*svalues; 1341eb62cbbSBarry Smith 1351eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 13628988994SBarry Smith MPI_Allreduce((void *) &aij->insertmode,(void *) &addv,1,MPI_INT, 1371eb62cbbSBarry Smith MPI_BOR,comm); 1381eb62cbbSBarry Smith if (addv == (AddValues|InsertValues)) { 1391eb62cbbSBarry Smith SETERR(1,"Some processors have inserted while others have added"); 1401eb62cbbSBarry Smith } 1411eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1421eb62cbbSBarry Smith 1431eb62cbbSBarry Smith /* first count number of contributors to each processor */ 1441eb62cbbSBarry Smith nprocs = (int *) MALLOC( 2*numtids*sizeof(int) ); CHKPTR(nprocs); 1451eb62cbbSBarry Smith MEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 1461eb62cbbSBarry Smith owner = (int *) MALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTR(owner); 1471eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1481eb62cbbSBarry Smith idx = aij->stash.idx[i]; 1491eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 1501eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1511eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1528a729477SBarry Smith } 1538a729477SBarry Smith } 1548a729477SBarry Smith } 1551eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 1561eb62cbbSBarry Smith 1571eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 1581eb62cbbSBarry Smith work = (int *) MALLOC( numtids*sizeof(int) ); CHKPTR(work); 1591eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 1601eb62cbbSBarry Smith nreceives = work[mytid]; 1611eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 1621eb62cbbSBarry Smith nmax = work[mytid]; 1631eb62cbbSBarry Smith FREE(work); 1641eb62cbbSBarry Smith 1651eb62cbbSBarry Smith /* post receives: 1661eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1671eb62cbbSBarry Smith (global index,value) we store the global index as a double 168d6dfbf8fSBarry Smith to simplify the message passing. 1691eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1701eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1711eb62cbbSBarry Smith this is a lot of wasted space. 1721eb62cbbSBarry Smith 1731eb62cbbSBarry Smith 1741eb62cbbSBarry Smith This could be done better. 1751eb62cbbSBarry Smith */ 17628988994SBarry Smith rvalues = (Scalar *) MALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 1771eb62cbbSBarry Smith CHKPTR(rvalues); 1781eb62cbbSBarry Smith recv_waits = (MPI_Request *) MALLOC((nreceives+1)*sizeof(MPI_Request)); 1791eb62cbbSBarry Smith CHKPTR(recv_waits); 1801eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 1811eb62cbbSBarry Smith MPI_Irecv((void *)(rvalues+3*nmax*i),3*nmax,MPI_SCALAR,MPI_ANY_SOURCE,tag, 1821eb62cbbSBarry Smith comm,recv_waits+i); 1831eb62cbbSBarry Smith } 1841eb62cbbSBarry Smith 1851eb62cbbSBarry Smith /* do sends: 1861eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1871eb62cbbSBarry Smith the ith processor 1881eb62cbbSBarry Smith */ 1891eb62cbbSBarry Smith svalues = (Scalar *) MALLOC( 3*(aij->stash.n+1)*sizeof(Scalar) ); 1901eb62cbbSBarry Smith CHKPTR(svalues); 1911eb62cbbSBarry Smith send_waits = (MPI_Request *) MALLOC( (nsends+1)*sizeof(MPI_Request)); 1921eb62cbbSBarry Smith CHKPTR(send_waits); 1931eb62cbbSBarry Smith starts = (int *) MALLOC( numtids*sizeof(int) ); CHKPTR(starts); 1941eb62cbbSBarry Smith starts[0] = 0; 1951eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1961eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1971eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1981eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1991eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 2001eb62cbbSBarry Smith } 2011eb62cbbSBarry Smith FREE(owner); 2021eb62cbbSBarry Smith starts[0] = 0; 2031eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2041eb62cbbSBarry Smith count = 0; 2051eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 2061eb62cbbSBarry Smith if (procs[i]) { 2071eb62cbbSBarry Smith MPI_Isend((void*)(svalues+3*starts[i]),3*nprocs[i],MPI_SCALAR,i,tag, 2081eb62cbbSBarry Smith comm,send_waits+count++); 2091eb62cbbSBarry Smith } 2101eb62cbbSBarry Smith } 2111eb62cbbSBarry Smith FREE(starts); FREE(nprocs); 2121eb62cbbSBarry Smith 2131eb62cbbSBarry Smith /* Free cache space */ 2141eb62cbbSBarry Smith aij->stash.nmax = aij->stash.n = 0; 2151eb62cbbSBarry Smith if (aij->stash.array){ FREE(aij->stash.array); aij->stash.array = 0;} 2161eb62cbbSBarry Smith 2171eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 2181eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 2191eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 2201eb62cbbSBarry Smith aij->rmax = nmax; 2211eb62cbbSBarry Smith 2221eb62cbbSBarry Smith return 0; 2231eb62cbbSBarry Smith } 22444a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 2251eb62cbbSBarry Smith 22644a69424SLois Curfman McInnes static int MatEndAssemble_MPIAIJ(Mat mat) 2271eb62cbbSBarry Smith { 2281eb62cbbSBarry Smith int ierr; 22944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 2301eb62cbbSBarry Smith 2311eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 2326abc6512SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n; 2331eb62cbbSBarry Smith int row,col; 2341eb62cbbSBarry Smith Scalar *values,val; 2351eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 2361eb62cbbSBarry Smith 2371eb62cbbSBarry Smith /* wait on receives */ 2381eb62cbbSBarry Smith while (count) { 239d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 2401eb62cbbSBarry Smith /* unpack receives into our local space */ 241d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 2421eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_SCALAR,&n); 2431eb62cbbSBarry Smith n = n/3; 2441eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2451eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2461eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2471eb62cbbSBarry Smith val = values[3*i+2]; 2481eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2491eb62cbbSBarry Smith col -= aij->cstart; 2501eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2511eb62cbbSBarry Smith } 2521eb62cbbSBarry Smith else { 253d6dfbf8fSBarry Smith if (aij->assembled) { 2549e25ed09SBarry Smith if (!aij->colmap) {ierr = CreateColmap(mat); CHKERR(ierr);} 2559e25ed09SBarry Smith col = aij->colmap[col] - 1; 2569e25ed09SBarry Smith if (col < 0) { 2579e25ed09SBarry Smith SETERR(1,"Cannot insert new off diagonal block nonzero in\ 2589e25ed09SBarry Smith already\ 259d6dfbf8fSBarry Smith assembled matrix. Contact petsc-maint@mcs.anl.gov\ 260d6dfbf8fSBarry Smith if your need this feature"); 261d6dfbf8fSBarry Smith } 2629e25ed09SBarry Smith } 2631eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2641eb62cbbSBarry Smith } 2651eb62cbbSBarry Smith } 2661eb62cbbSBarry Smith count--; 2671eb62cbbSBarry Smith } 2681eb62cbbSBarry Smith FREE(aij->recv_waits); FREE(aij->rvalues); 2691eb62cbbSBarry Smith 2701eb62cbbSBarry Smith /* wait on sends */ 2711eb62cbbSBarry Smith if (aij->nsends) { 2721eb62cbbSBarry Smith send_status = (MPI_Status *) MALLOC( aij->nsends*sizeof(MPI_Status) ); 2731eb62cbbSBarry Smith CHKPTR(send_status); 2741eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 2751eb62cbbSBarry Smith FREE(send_status); 2761eb62cbbSBarry Smith } 2771eb62cbbSBarry Smith FREE(aij->send_waits); FREE(aij->svalues); 2781eb62cbbSBarry Smith 2791eb62cbbSBarry Smith aij->insertmode = NotSetValues; 2801eb62cbbSBarry Smith ierr = MatBeginAssembly(aij->A); CHKERR(ierr); 2811eb62cbbSBarry Smith ierr = MatEndAssembly(aij->A); CHKERR(ierr); 2821eb62cbbSBarry Smith 2839e25ed09SBarry Smith if (!aij->assembled) { 284d3c9fed9SLois Curfman McInnes ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERR(ierr); 2859e25ed09SBarry Smith } 2861eb62cbbSBarry Smith ierr = MatBeginAssembly(aij->B); CHKERR(ierr); 2871eb62cbbSBarry Smith ierr = MatEndAssembly(aij->B); CHKERR(ierr); 288d6dfbf8fSBarry Smith 289d6dfbf8fSBarry Smith aij->assembled = 1; 2908a729477SBarry Smith return 0; 2918a729477SBarry Smith } 2928a729477SBarry Smith 29344a69424SLois Curfman McInnes static int MatZero_MPIAIJ(Mat A) 2941eb62cbbSBarry Smith { 29544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 2961eb62cbbSBarry Smith 2971eb62cbbSBarry Smith MatZeroEntries(l->A); MatZeroEntries(l->B); 2981eb62cbbSBarry Smith return 0; 2991eb62cbbSBarry Smith } 3001eb62cbbSBarry Smith 3011eb62cbbSBarry Smith /* again this uses the same basic stratagy as in the assembly and 3021eb62cbbSBarry Smith scatter create routines, we should try to do it systemamatically 3031eb62cbbSBarry Smith if we can figure out the proper level of generality. */ 3041eb62cbbSBarry Smith 3051eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 3061eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 3071eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 3081eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 3091eb62cbbSBarry Smith routine. 3101eb62cbbSBarry Smith */ 31144a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 3121eb62cbbSBarry Smith { 31344a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 3141eb62cbbSBarry Smith int i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids; 3156abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 3161eb62cbbSBarry Smith int nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid; 3176abc6512SBarry Smith int *rvalues,tag = 67,count,base,slen,n,*source; 318d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 319d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 3201eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 3211eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 3221eb62cbbSBarry Smith IS istmp; 3231eb62cbbSBarry Smith 32444a69424SLois Curfman McInnes if (!l->assembled) SETERR(1,"MatZeroRows_MPIAIJ: must assemble matrix first"); 3251eb62cbbSBarry Smith ierr = ISGetLocalSize(is,&N); CHKERR(ierr); 3261eb62cbbSBarry Smith ierr = ISGetIndices(is,&rows); CHKERR(ierr); 3271eb62cbbSBarry Smith 3281eb62cbbSBarry Smith /* first count number of contributors to each processor */ 3291eb62cbbSBarry Smith nprocs = (int *) MALLOC( 2*numtids*sizeof(int) ); CHKPTR(nprocs); 3301eb62cbbSBarry Smith MEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 3311eb62cbbSBarry Smith owner = (int *) MALLOC((N+1)*sizeof(int)); CHKPTR(owner); /* see note*/ 3321eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3331eb62cbbSBarry Smith idx = rows[i]; 3341eb62cbbSBarry Smith found = 0; 3351eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 3361eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3371eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 3381eb62cbbSBarry Smith } 3391eb62cbbSBarry Smith } 340d6dfbf8fSBarry Smith if (!found) SETERR(1,"Imdex out of range"); 3411eb62cbbSBarry Smith } 3421eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 3431eb62cbbSBarry Smith 3441eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3451eb62cbbSBarry Smith work = (int *) MALLOC( numtids*sizeof(int) ); CHKPTR(work); 3461eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 3471eb62cbbSBarry Smith nrecvs = work[mytid]; 3481eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 3491eb62cbbSBarry Smith nmax = work[mytid]; 3501eb62cbbSBarry Smith FREE(work); 3511eb62cbbSBarry Smith 3521eb62cbbSBarry Smith /* post receives: */ 35328988994SBarry Smith rvalues = (int *) MALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 3541eb62cbbSBarry Smith CHKPTR(rvalues); 3551eb62cbbSBarry Smith recv_waits = (MPI_Request *) MALLOC((nrecvs+1)*sizeof(MPI_Request)); 3561eb62cbbSBarry Smith CHKPTR(recv_waits); 3571eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3581eb62cbbSBarry Smith MPI_Irecv((void *)(rvalues+nmax*i),nmax,MPI_INT,MPI_ANY_SOURCE,tag, 3591eb62cbbSBarry Smith comm,recv_waits+i); 3601eb62cbbSBarry Smith } 3611eb62cbbSBarry Smith 3621eb62cbbSBarry Smith /* do sends: 3631eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3641eb62cbbSBarry Smith the ith processor 3651eb62cbbSBarry Smith */ 3661eb62cbbSBarry Smith svalues = (int *) MALLOC( (N+1)*sizeof(int) ); CHKPTR(svalues); 3671eb62cbbSBarry Smith send_waits = (MPI_Request *) MALLOC( (nsends+1)*sizeof(MPI_Request)); 3681eb62cbbSBarry Smith CHKPTR(send_waits); 3691eb62cbbSBarry Smith starts = (int *) MALLOC( (numtids+1)*sizeof(int) ); CHKPTR(starts); 3701eb62cbbSBarry Smith starts[0] = 0; 3711eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3721eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3731eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3741eb62cbbSBarry Smith } 3751eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3761eb62cbbSBarry Smith 3771eb62cbbSBarry Smith starts[0] = 0; 3781eb62cbbSBarry Smith for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3791eb62cbbSBarry Smith count = 0; 3801eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 3811eb62cbbSBarry Smith if (procs[i]) { 3821eb62cbbSBarry Smith MPI_Isend((void*)(svalues+starts[i]),nprocs[i],MPI_INT,i,tag, 3831eb62cbbSBarry Smith comm,send_waits+count++); 3841eb62cbbSBarry Smith } 3851eb62cbbSBarry Smith } 3861eb62cbbSBarry Smith FREE(starts); 3871eb62cbbSBarry Smith 3881eb62cbbSBarry Smith base = owners[mytid]; 3891eb62cbbSBarry Smith 3901eb62cbbSBarry Smith /* wait on receives */ 3911eb62cbbSBarry Smith lens = (int *) MALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTR(lens); 3921eb62cbbSBarry Smith source = lens + nrecvs; 3931eb62cbbSBarry Smith count = nrecvs; slen = 0; 3941eb62cbbSBarry Smith while (count) { 395d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3961eb62cbbSBarry Smith /* unpack receives into our local space */ 3971eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 398d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 399d6dfbf8fSBarry Smith lens[imdex] = n; 4001eb62cbbSBarry Smith slen += n; 4011eb62cbbSBarry Smith count--; 4021eb62cbbSBarry Smith } 4031eb62cbbSBarry Smith FREE(recv_waits); 4041eb62cbbSBarry Smith 4051eb62cbbSBarry Smith /* move the data into the send scatter */ 4061eb62cbbSBarry Smith lrows = (int *) MALLOC( slen*sizeof(int) ); CHKPTR(lrows); 4071eb62cbbSBarry Smith count = 0; 4081eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 4091eb62cbbSBarry Smith values = rvalues + i*nmax; 4101eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 4111eb62cbbSBarry Smith lrows[count++] = values[j] - base; 4121eb62cbbSBarry Smith } 4131eb62cbbSBarry Smith } 4141eb62cbbSBarry Smith FREE(rvalues); FREE(lens); 4151eb62cbbSBarry Smith FREE(owner); FREE(nprocs); 4161eb62cbbSBarry Smith 4171eb62cbbSBarry Smith /* actually zap the local rows */ 4181eb62cbbSBarry Smith ierr = ISCreateSequential(slen,lrows,&istmp); CHKERR(ierr); FREE(lrows); 4191eb62cbbSBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERR(ierr); 4201eb62cbbSBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERR(ierr); 4211eb62cbbSBarry Smith ierr = ISDestroy(istmp); CHKERR(ierr); 4221eb62cbbSBarry Smith 4231eb62cbbSBarry Smith /* wait on sends */ 4241eb62cbbSBarry Smith if (nsends) { 4251eb62cbbSBarry Smith send_status = (MPI_Status *) MALLOC( nsends*sizeof(MPI_Status) ); 4261eb62cbbSBarry Smith CHKPTR(send_status); 4271eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 4281eb62cbbSBarry Smith FREE(send_status); 4291eb62cbbSBarry Smith } 4301eb62cbbSBarry Smith FREE(send_waits); FREE(svalues); 4311eb62cbbSBarry Smith 4321eb62cbbSBarry Smith 4331eb62cbbSBarry Smith return 0; 4341eb62cbbSBarry Smith } 4351eb62cbbSBarry Smith 43644a69424SLois Curfman McInnes static int MatMult_MPIAIJ(Mat aijin,Vec xx,Vec yy) 4371eb62cbbSBarry Smith { 43844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 4391eb62cbbSBarry Smith int ierr; 44044a69424SLois Curfman McInnes if (!aij->assembled) SETERR(1,"MatMult_MPIAIJ: must assemble matrix first"); 441d6dfbf8fSBarry Smith ierr = VecScatterBegin(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 4421eb62cbbSBarry Smith CHKERR(ierr); 4431eb62cbbSBarry Smith ierr = MatMult(aij->A,xx,yy); CHKERR(ierr); 444d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 445d6dfbf8fSBarry Smith CHKERR(ierr); 4461eb62cbbSBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,yy,yy); CHKERR(ierr); 4471eb62cbbSBarry Smith return 0; 4481eb62cbbSBarry Smith } 4491eb62cbbSBarry Smith 45044a69424SLois Curfman McInnes static int MatMultAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 451da3a660dSBarry Smith { 45244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 453da3a660dSBarry Smith int ierr; 45444a69424SLois Curfman McInnes if (!aij->assembled) SETERR(1,"MatMult_MPIAIJ: must assemble matrix first"); 455da3a660dSBarry Smith ierr = VecScatterBegin(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 456da3a660dSBarry Smith CHKERR(ierr); 457da3a660dSBarry Smith ierr = MatMultAdd(aij->A,xx,yy,zz); CHKERR(ierr); 458da3a660dSBarry Smith ierr = VecScatterEnd(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 459da3a660dSBarry Smith CHKERR(ierr); 460da3a660dSBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,zz,zz); CHKERR(ierr); 461da3a660dSBarry Smith return 0; 462da3a660dSBarry Smith } 463da3a660dSBarry Smith 46444a69424SLois Curfman McInnes static int MatMultTrans_MPIAIJ(Mat aijin,Vec xx,Vec yy) 465da3a660dSBarry Smith { 46644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 467da3a660dSBarry Smith int ierr; 468da3a660dSBarry Smith 46944a69424SLois Curfman McInnes if (!aij->assembled) 47044a69424SLois Curfman McInnes SETERR(1,"MatMulTrans_MPIAIJ: must assemble matrix first"); 471da3a660dSBarry Smith /* do nondiagonal part */ 472da3a660dSBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERR(ierr); 473da3a660dSBarry Smith /* send it on its way */ 474da3a660dSBarry Smith ierr = VecScatterBegin(aij->lvec,0,yy,0,AddValues, 475da3a660dSBarry Smith ScatterAll|ScatterReverse,aij->Mvctx); CHKERR(ierr); 476da3a660dSBarry Smith /* do local part */ 477da3a660dSBarry Smith ierr = MatMultTrans(aij->A,xx,yy); CHKERR(ierr); 478da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 479da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 480da3a660dSBarry Smith /* but is not perhaps always true. */ 481da3a660dSBarry Smith ierr = VecScatterEnd(aij->lvec,0,yy,0,AddValues,ScatterAll|ScatterReverse, 482da3a660dSBarry Smith aij->Mvctx); CHKERR(ierr); 483da3a660dSBarry Smith return 0; 484da3a660dSBarry Smith } 485da3a660dSBarry Smith 48644a69424SLois Curfman McInnes static int MatMultTransAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 487da3a660dSBarry Smith { 48844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 489da3a660dSBarry Smith int ierr; 490da3a660dSBarry Smith 49144a69424SLois Curfman McInnes if (!aij->assembled) 49244a69424SLois Curfman McInnes SETERR(1,"MatMulTransAdd_MPIAIJ: must assemble matrix first"); 493da3a660dSBarry Smith /* do nondiagonal part */ 494da3a660dSBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERR(ierr); 495da3a660dSBarry Smith /* send it on its way */ 496da3a660dSBarry Smith ierr = VecScatterBegin(aij->lvec,0,zz,0,AddValues, 497da3a660dSBarry Smith ScatterAll|ScatterReverse,aij->Mvctx); CHKERR(ierr); 498da3a660dSBarry Smith /* do local part */ 499da3a660dSBarry Smith ierr = MatMultTransAdd(aij->A,xx,yy,zz); CHKERR(ierr); 500da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 501da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 502da3a660dSBarry Smith /* but is not perhaps always true. */ 503da3a660dSBarry Smith ierr = VecScatterEnd(aij->lvec,0,zz,0,AddValues,ScatterAll|ScatterReverse, 504da3a660dSBarry Smith aij->Mvctx); CHKERR(ierr); 505da3a660dSBarry Smith return 0; 506da3a660dSBarry Smith } 507da3a660dSBarry Smith 5081eb62cbbSBarry Smith /* 5091eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 5101eb62cbbSBarry Smith diagonal block 5111eb62cbbSBarry Smith */ 51244a69424SLois Curfman McInnes static int MatGetDiag_MPIAIJ(Mat Ain,Vec v) 5131eb62cbbSBarry Smith { 51444a69424SLois Curfman McInnes Mat_MPIAIJ *A = (Mat_MPIAIJ *) Ain->data; 51544a69424SLois Curfman McInnes if (!A->assembled) SETERR(1,"MatGetDiag_MPIAIJ: must assemble matrix first"); 5161eb62cbbSBarry Smith return MatGetDiagonal(A->A,v); 5171eb62cbbSBarry Smith } 5181eb62cbbSBarry Smith 51944a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 5201eb62cbbSBarry Smith { 5211eb62cbbSBarry Smith Mat mat = (Mat) obj; 52244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5231eb62cbbSBarry Smith int ierr; 524a5a9c739SBarry Smith #if defined(PETSC_LOG) 525a5a9c739SBarry Smith PLogObjectState(obj,"Rows %d Cols %d",aij->M,aij->N); 526a5a9c739SBarry Smith #endif 5271eb62cbbSBarry Smith FREE(aij->rowners); 5281eb62cbbSBarry Smith ierr = MatDestroy(aij->A); CHKERR(ierr); 5291eb62cbbSBarry Smith ierr = MatDestroy(aij->B); CHKERR(ierr); 5309e25ed09SBarry Smith if (aij->colmap) FREE(aij->colmap); 5319e25ed09SBarry Smith if (aij->garray) FREE(aij->garray); 5321eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 5331eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 534a5a9c739SBarry Smith FREE(aij); 535a5a9c739SBarry Smith PLogObjectDestroy(mat); 536a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 5371eb62cbbSBarry Smith return 0; 5381eb62cbbSBarry Smith } 5391eb62cbbSBarry Smith 54044a69424SLois Curfman McInnes static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 5411eb62cbbSBarry Smith { 5421eb62cbbSBarry Smith Mat mat = (Mat) obj; 54344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5441eb62cbbSBarry Smith int ierr; 545d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 5461eb62cbbSBarry Smith 54744a69424SLois Curfman McInnes if (!aij->assembled) SETERR(1,"MatView_MPIAIJ: must assemble matrix first"); 548d13ab20cSBarry Smith if (vobj->cookie == VIEWER_COOKIE) { 549d13ab20cSBarry Smith FILE *fd = ViewerFileGetPointer(viewer); 550d13ab20cSBarry Smith if (vobj->type == FILE_VIEWER) { 551d6dfbf8fSBarry Smith MPE_Seq_begin(mat->comm,1); 552d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 5531eb62cbbSBarry Smith aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5541eb62cbbSBarry Smith aij->cend); 555da69df5fSBarry Smith ierr = MatView(aij->A,viewer); CHKERR(ierr); 556da69df5fSBarry Smith ierr = MatView(aij->B,viewer); CHKERR(ierr); 557d13ab20cSBarry Smith fflush(fd); 558d6dfbf8fSBarry Smith MPE_Seq_end(mat->comm,1); 559d13ab20cSBarry Smith } 560d13ab20cSBarry Smith } 5611eb62cbbSBarry Smith return 0; 5621eb62cbbSBarry Smith } 5631eb62cbbSBarry Smith 564d3c9fed9SLois Curfman McInnes extern int MatMarkDiag_AIJ(Mat_AIJ *); 5651eb62cbbSBarry Smith /* 5661eb62cbbSBarry Smith This has to provide several versions. 5671eb62cbbSBarry Smith 5681eb62cbbSBarry Smith 1) per sequential 5691eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 5701eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 571d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 5721eb62cbbSBarry Smith */ 57344a69424SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,int flag,double shift, 5748a729477SBarry Smith int its,Vec xx) 5758a729477SBarry Smith { 57644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 577d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 57844a69424SLois Curfman McInnes Mat_AIJ *A = (Mat_AIJ *) AA->data, *B = (Mat_AIJ *)BB->data; 5796abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 5806abc6512SBarry Smith int ierr,*idx, *diag; 5816abc6512SBarry Smith int n = mat->n, m = mat->m, i; 582da3a660dSBarry Smith Vec tt; 5838a729477SBarry Smith 58444a69424SLois Curfman McInnes if (!mat->assembled) SETERR(1,"MatRelax_MPIAIJ: must assemble matrix first"); 5851eb62cbbSBarry Smith 586d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 587d6dfbf8fSBarry Smith xs = x -1; /* shift by one for index start of 1 */ 588da3a660dSBarry Smith ls--; 589d3c9fed9SLois Curfman McInnes if (!A->diag) {if ((ierr = MatMarkDiag_AIJ(A))) return ierr;} 590d6dfbf8fSBarry Smith diag = A->diag; 591acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 592acb40c82SBarry Smith SETERR(1,"That option not yet support for parallel AIJ matrices"); 593acb40c82SBarry Smith } 594da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 595da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 596da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 597da3a660dSBarry Smith 598da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 599da3a660dSBarry Smith 600da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 601da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 602da3a660dSBarry Smith is the relaxation factor. 603da3a660dSBarry Smith */ 604da3a660dSBarry Smith ierr = VecCreate(xx,&tt); CHKERR(ierr); 605da3a660dSBarry Smith VecGetArray(tt,&t); 606da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 607da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 608da3a660dSBarry Smith VecSet(&zero,mat->lvec); 609da3a660dSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 610da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 611da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 612da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 613da3a660dSBarry Smith idx = A->j + diag[i]; 614da3a660dSBarry Smith v = A->a + diag[i]; 615da3a660dSBarry Smith sum = b[i]; 616da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 617da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 618da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 619da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 620da3a660dSBarry Smith v = B->a + B->i[i] - 1; 621da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 622da3a660dSBarry Smith x[i] = omega*(sum/d); 623da3a660dSBarry Smith } 624da3a660dSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 625da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 626da3a660dSBarry Smith 627da3a660dSBarry Smith /* t = b - (2*E - D)x */ 628da3a660dSBarry Smith v = A->a; 629da3a660dSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ - 1])*x[i]; } 630da3a660dSBarry Smith 631da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 632da3a660dSBarry Smith ts = t - 1; /* shifted by one for index start of a or mat->j*/ 633da3a660dSBarry Smith diag = A->diag; 634da3a660dSBarry Smith VecSet(&zero,mat->lvec); 635da3a660dSBarry Smith ierr = VecPipelineBegin(tt,0,mat->lvec,0,InsertValues,PipelineDown, 636da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 637da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 638da3a660dSBarry Smith n = diag[i] - A->i[i]; 639da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 640da3a660dSBarry Smith v = A->a + A->i[i] - 1; 641da3a660dSBarry Smith sum = t[i]; 642da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 643da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 644da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 645da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 646da3a660dSBarry Smith v = B->a + B->i[i] - 1; 647da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 648da3a660dSBarry Smith t[i] = omega*(sum/d); 649da3a660dSBarry Smith } 650da3a660dSBarry Smith ierr = VecPipelineEnd(tt,0,mat->lvec,0,InsertValues,PipelineDown, 651da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 652da3a660dSBarry Smith /* x = x + t */ 653da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 654da3a660dSBarry Smith VecDestroy(tt); 655da3a660dSBarry Smith return 0; 656da3a660dSBarry Smith } 657da3a660dSBarry Smith 6581eb62cbbSBarry Smith 659d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 660da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 661da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 662da3a660dSBarry Smith } 663da3a660dSBarry Smith else { 664d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 665d6dfbf8fSBarry Smith CHKERR(ierr); 666d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 667d6dfbf8fSBarry Smith CHKERR(ierr); 668da3a660dSBarry Smith } 669d6dfbf8fSBarry Smith while (its--) { 670d6dfbf8fSBarry Smith /* go down through the rows */ 671d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineDown, 672d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 673d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 674d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 675d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 676d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 677d6dfbf8fSBarry Smith sum = b[i]; 678d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 679d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 680d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 681d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 682d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 683d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 684d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 685d6dfbf8fSBarry Smith } 686d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineDown, 687d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 688d6dfbf8fSBarry Smith /* come up through the rows */ 689d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 690d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 691d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 692d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 693d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 694d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 695d6dfbf8fSBarry Smith sum = b[i]; 696d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 697d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 698d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 699d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 700d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 701d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 702d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 703d6dfbf8fSBarry Smith } 704d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 705d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 706d6dfbf8fSBarry Smith } 707d6dfbf8fSBarry Smith } 708d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 709da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 710da3a660dSBarry Smith VecSet(&zero,mat->lvec); 711da3a660dSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineDown, 712da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 713da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 714da3a660dSBarry Smith n = diag[i] - A->i[i]; 715da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 716da3a660dSBarry Smith v = A->a + A->i[i] - 1; 717da3a660dSBarry Smith sum = b[i]; 718da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 719da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 720da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 721da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 722da3a660dSBarry Smith v = B->a + B->i[i] - 1; 723da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 724da3a660dSBarry Smith x[i] = omega*(sum/d); 725da3a660dSBarry Smith } 726da3a660dSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineDown, 727da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 728da3a660dSBarry Smith its--; 729da3a660dSBarry Smith } 730d6dfbf8fSBarry Smith while (its--) { 731d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 732d6dfbf8fSBarry Smith CHKERR(ierr); 733d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 734d6dfbf8fSBarry Smith CHKERR(ierr); 735d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineDown, 736d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 737d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 738d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 739d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 740d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 741d6dfbf8fSBarry Smith sum = b[i]; 742d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 743d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 744d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 745d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 746d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 747d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 748d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 749d6dfbf8fSBarry Smith } 750d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineDown, 751d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 752d6dfbf8fSBarry Smith } 753d6dfbf8fSBarry Smith } 754d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 755da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 756da3a660dSBarry Smith VecSet(&zero,mat->lvec); 757da3a660dSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 758da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 759da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 760da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 761da3a660dSBarry Smith idx = A->j + diag[i]; 762da3a660dSBarry Smith v = A->a + diag[i]; 763da3a660dSBarry Smith sum = b[i]; 764da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 765da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 766da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 767da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 768da3a660dSBarry Smith v = B->a + B->i[i] - 1; 769da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 770da3a660dSBarry Smith x[i] = omega*(sum/d); 771da3a660dSBarry Smith } 772da3a660dSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 773da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 774da3a660dSBarry Smith its--; 775da3a660dSBarry Smith } 776d6dfbf8fSBarry Smith while (its--) { 777d6dfbf8fSBarry Smith ierr = VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterDown, 778d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 779d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterDown, 780d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 781d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 782d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 783d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 784d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 785d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 786d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 787d6dfbf8fSBarry Smith sum = b[i]; 788d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 789d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 790d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 791d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 792d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 793d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 794d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 795d6dfbf8fSBarry Smith } 796d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 797d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 798d6dfbf8fSBarry Smith } 799d6dfbf8fSBarry Smith } 800d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 801da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 802da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 803da3a660dSBarry Smith } 804d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 805d6dfbf8fSBarry Smith CHKERR(ierr); 806d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 807d6dfbf8fSBarry Smith CHKERR(ierr); 808d6dfbf8fSBarry Smith while (its--) { 809d6dfbf8fSBarry Smith /* go down through the rows */ 810d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 811d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 812d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 813d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 814d6dfbf8fSBarry Smith sum = b[i]; 815d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 816d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 817d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 818d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 819d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 820d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 821d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 822d6dfbf8fSBarry Smith } 823d6dfbf8fSBarry Smith /* come up through the rows */ 824d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 825d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 826d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 827d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 828d6dfbf8fSBarry Smith sum = b[i]; 829d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 830d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 831d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 832d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 833d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 834d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 835d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 836d6dfbf8fSBarry Smith } 837d6dfbf8fSBarry Smith } 838d6dfbf8fSBarry Smith } 839d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 840da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 841da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 842da3a660dSBarry Smith } 843d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 844d6dfbf8fSBarry Smith CHKERR(ierr); 845d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 846d6dfbf8fSBarry Smith CHKERR(ierr); 847d6dfbf8fSBarry Smith while (its--) { 848d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 849d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 850d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 851d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 852d6dfbf8fSBarry Smith sum = b[i]; 853d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 854d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 855d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 856d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 857d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 858d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 859d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 860d6dfbf8fSBarry Smith } 861d6dfbf8fSBarry Smith } 862d6dfbf8fSBarry Smith } 863d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 864da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 865da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 866da3a660dSBarry Smith } 867d6dfbf8fSBarry Smith ierr = VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterAll, 868d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 869d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterAll, 870d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 871d6dfbf8fSBarry Smith while (its--) { 872d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 873d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 874d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 875d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 876d6dfbf8fSBarry Smith sum = b[i]; 877d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 878d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 879d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 880d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 881d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 882d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 883d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 884d6dfbf8fSBarry Smith } 885d6dfbf8fSBarry Smith } 886d6dfbf8fSBarry Smith } 8878a729477SBarry Smith return 0; 8888a729477SBarry Smith } 88944a69424SLois Curfman McInnes static int MatInsOpt_MPIAIJ(Mat aijin,int op) 890c74985f6SBarry Smith { 89144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 892c74985f6SBarry Smith 893c74985f6SBarry Smith if (op == NO_NEW_NONZERO_LOCATIONS) { 894c74985f6SBarry Smith MatSetOption(aij->A,op); 895c74985f6SBarry Smith MatSetOption(aij->B,op); 896c74985f6SBarry Smith } 897c74985f6SBarry Smith else if (op == YES_NEW_NONZERO_LOCATIONS) { 898c74985f6SBarry Smith MatSetOption(aij->A,op); 899c74985f6SBarry Smith MatSetOption(aij->B,op); 900c74985f6SBarry Smith } 901c74985f6SBarry Smith else if (op == COLUMN_ORIENTED) SETERR(1,"Column oriented not supported"); 902c74985f6SBarry Smith return 0; 903c74985f6SBarry Smith } 904c74985f6SBarry Smith 90544a69424SLois Curfman McInnes static int MatSize_MPIAIJ(Mat matin,int *m,int *n) 906c74985f6SBarry Smith { 90744a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 908c74985f6SBarry Smith *m = mat->M; *n = mat->N; 909c74985f6SBarry Smith return 0; 910c74985f6SBarry Smith } 911c74985f6SBarry Smith 91244a69424SLois Curfman McInnes static int MatLocalSize_MPIAIJ(Mat matin,int *m,int *n) 913c74985f6SBarry Smith { 91444a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 915c74985f6SBarry Smith *m = mat->m; *n = mat->n; 916c74985f6SBarry Smith return 0; 917c74985f6SBarry Smith } 918c74985f6SBarry Smith 91944a69424SLois Curfman McInnes static int MatRange_MPIAIJ(Mat matin,int *m,int *n) 920c74985f6SBarry Smith { 92144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 922c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 923c74985f6SBarry Smith return 0; 924c74985f6SBarry Smith } 925c74985f6SBarry Smith 92639e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 92739e00950SLois Curfman McInnes { 92839e00950SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) matin->data; 92939e00950SLois Curfman McInnes Scalar *vworkA, *vworkB; 930*abc0e9e4SLois Curfman McInnes int ierr, *cworkA, *cworkB, lrow, cstart = aij->cstart; 93139e00950SLois Curfman McInnes int nztot, nzA, nzB, i, rstart = aij->rstart, rend = aij->rend; 93239e00950SLois Curfman McInnes 93339e00950SLois Curfman McInnes if (!aij->assembled) 93439e00950SLois Curfman McInnes SETERR(1,"MatGetRow_MPIAIJ: Must assemble matrix first."); 93539e00950SLois Curfman McInnes if (row < rstart || row >= rend) 936*abc0e9e4SLois Curfman McInnes SETERR(1,"MatGetRow_MPIAIJ: Currently you can get only local rows.") 937*abc0e9e4SLois Curfman McInnes lrow = row - rstart; 938*abc0e9e4SLois Curfman McInnes ierr = MatGetRow(aij->A,lrow,&nzA,&cworkA,&vworkA); CHKERR(ierr); 93939e00950SLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 940*abc0e9e4SLois Curfman McInnes ierr = MatGetRow(aij->B,lrow,&nzB,&cworkB,&vworkB); CHKERR(ierr); 941*abc0e9e4SLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = aij->garray[cworkB[i]]; 94239e00950SLois Curfman McInnes 94339e00950SLois Curfman McInnes if (nztot = nzA + nzB) { 94439e00950SLois Curfman McInnes *idx = (int *) MALLOC( (nztot)*sizeof(int) ); CHKPTR(*idx); 94539e00950SLois Curfman McInnes *v = (Scalar *) MALLOC( (nztot)*sizeof(Scalar) ); CHKPTR(*v); 94639e00950SLois Curfman McInnes for ( i=0; i<nzA; i++ ) { 94739e00950SLois Curfman McInnes (*idx)[i] = cworkA[i]; 94839e00950SLois Curfman McInnes (*v)[i] = vworkA[i]; 94939e00950SLois Curfman McInnes } 95039e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 95139e00950SLois Curfman McInnes (*idx)[i+nzA] = cworkB[i]; 952*abc0e9e4SLois Curfman McInnes (*v)[i+nzA] = vworkB[i]; 95339e00950SLois Curfman McInnes } 95439e00950SLois Curfman McInnes } 95539e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 95639e00950SLois Curfman McInnes *nz = nztot; 957*abc0e9e4SLois Curfman McInnes ierr = MatRestoreRow(aij->A,lrow,&nzA,&cworkA,&vworkA); CHKERR(ierr); 958*abc0e9e4SLois Curfman McInnes ierr = MatRestoreRow(aij->B,lrow,&nzB,&cworkB,&vworkB); CHKERR(ierr); 95939e00950SLois Curfman McInnes return 0; 96039e00950SLois Curfman McInnes } 96139e00950SLois Curfman McInnes 96239e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 96339e00950SLois Curfman McInnes { 96439e00950SLois Curfman McInnes if (*idx) FREE(*idx); 96539e00950SLois Curfman McInnes if (*v) FREE(*v); 96639e00950SLois Curfman McInnes return 0; 96739e00950SLois Curfman McInnes } 96839e00950SLois Curfman McInnes 96944a69424SLois Curfman McInnes static int MatCopy_MPIAIJ(Mat,Mat *); 97044a69424SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MATTYPE,Mat *); 971d6dfbf8fSBarry Smith 9728a729477SBarry Smith /* -------------------------------------------------------------------*/ 97344a69424SLois Curfman McInnes static struct _MatOps MatOps = {MatInsertValues_MPIAIJ, 97439e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 97544a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 97644a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 9771eb62cbbSBarry Smith 0,0,0,0, 9788a729477SBarry Smith 0,0, 97944a69424SLois Curfman McInnes MatRelax_MPIAIJ, 9808a729477SBarry Smith 0, 9811eb62cbbSBarry Smith 0,0,0, 98244a69424SLois Curfman McInnes MatCopy_MPIAIJ, 98344a69424SLois Curfman McInnes MatGetDiag_MPIAIJ,0,0, 98444a69424SLois Curfman McInnes MatBeginAssemble_MPIAIJ,MatEndAssemble_MPIAIJ, 9851eb62cbbSBarry Smith 0, 98644a69424SLois Curfman McInnes MatInsOpt_MPIAIJ,MatZero_MPIAIJ,MatZeroRows_MPIAIJ,0, 987c74985f6SBarry Smith 0,0,0,0, 98844a69424SLois Curfman McInnes MatSize_MPIAIJ,MatLocalSize_MPIAIJ,MatRange_MPIAIJ, 98977915d1cSLois Curfman McInnes 0,0, 99044a69424SLois Curfman McInnes 0,MatConvert_MPIAIJ }; 9918a729477SBarry Smith 9928a729477SBarry Smith /*@ 9938a729477SBarry Smith 9941eb62cbbSBarry Smith MatCreateMPIAIJ - Creates a sparse parallel matrix 9951eb62cbbSBarry Smith in AIJ format. 9968a729477SBarry Smith 9978a729477SBarry Smith Input Parameters: 9981eb62cbbSBarry Smith . comm - MPI communicator 9991eb62cbbSBarry Smith . m,n - number of local rows and columns (or -1 to have calculated) 10001eb62cbbSBarry Smith . M,N - global rows and columns (or -1 to have calculated) 10011eb62cbbSBarry Smith . d_nz - total number nonzeros in diagonal portion of matrix 10021eb62cbbSBarry Smith . d_nzz - number of nonzeros per row in diagonal portion of matrix or null 10038a729477SBarry Smith . You must leave room for the diagonal entry even if it is zero. 10041eb62cbbSBarry Smith . o_nz - total number nonzeros in off-diagonal portion of matrix 10051eb62cbbSBarry Smith . o_nzz - number of nonzeros per row in off-diagonal portion of matrix 10061eb62cbbSBarry Smith . or null. You must have at least one nonzero per row. 10078a729477SBarry Smith 10088a729477SBarry Smith Output parameters: 10098a729477SBarry Smith . newmat - the matrix 10108a729477SBarry Smith 10111eb62cbbSBarry Smith Keywords: matrix, aij, compressed row, sparse, parallel 10128a729477SBarry Smith @*/ 10131eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 10141eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 10158a729477SBarry Smith { 10168a729477SBarry Smith Mat mat; 101744a69424SLois Curfman McInnes Mat_MPIAIJ *aij; 10186abc6512SBarry Smith int ierr, i,sum[2],work[2]; 10198a729477SBarry Smith *newmat = 0; 102044a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1021a5a9c739SBarry Smith PLogObjectCreate(mat); 102244a69424SLois Curfman McInnes mat->data = (void *) (aij = NEW(Mat_MPIAIJ)); CHKPTR(aij); 10238a729477SBarry Smith mat->ops = &MatOps; 102444a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 102544a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 10268a729477SBarry Smith mat->factor = 0; 10278a729477SBarry Smith mat->row = 0; 10288a729477SBarry Smith mat->col = 0; 1029d6dfbf8fSBarry Smith 1030d6dfbf8fSBarry Smith mat->comm = comm; 10311eb62cbbSBarry Smith aij->insertmode = NotSetValues; 10321eb62cbbSBarry Smith MPI_Comm_rank(comm,&aij->mytid); 10331eb62cbbSBarry Smith MPI_Comm_size(comm,&aij->numtids); 10341eb62cbbSBarry Smith 10351eb62cbbSBarry Smith if (M == -1 || N == -1) { 10361eb62cbbSBarry Smith work[0] = m; work[1] = n; 1037d6dfbf8fSBarry Smith MPI_Allreduce((void *) work,(void *) sum,2,MPI_INT,MPI_SUM,comm ); 10381eb62cbbSBarry Smith if (M == -1) M = sum[0]; 10391eb62cbbSBarry Smith if (N == -1) N = sum[1]; 10401eb62cbbSBarry Smith } 10411eb62cbbSBarry Smith if (m == -1) {m = M/aij->numtids + ((M % aij->numtids) > aij->mytid);} 10421eb62cbbSBarry Smith if (n == -1) {n = N/aij->numtids + ((N % aij->numtids) > aij->mytid);} 10438a729477SBarry Smith aij->m = m; 10448a729477SBarry Smith aij->n = n; 10451eb62cbbSBarry Smith aij->N = N; 10461eb62cbbSBarry Smith aij->M = M; 10471eb62cbbSBarry Smith 10481eb62cbbSBarry Smith /* build local table of row and column ownerships */ 10491eb62cbbSBarry Smith aij->rowners = (int *) MALLOC(2*(aij->numtids+2)*sizeof(int)); 10501eb62cbbSBarry Smith CHKPTR(aij->rowners); 10511eb62cbbSBarry Smith aij->cowners = aij->rowners + aij->numtids + 1; 10521eb62cbbSBarry Smith MPI_Allgather(&m,1,MPI_INT,aij->rowners+1,1,MPI_INT,comm); 10531eb62cbbSBarry Smith aij->rowners[0] = 0; 10541eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 10551eb62cbbSBarry Smith aij->rowners[i] += aij->rowners[i-1]; 10568a729477SBarry Smith } 10571eb62cbbSBarry Smith aij->rstart = aij->rowners[aij->mytid]; 10581eb62cbbSBarry Smith aij->rend = aij->rowners[aij->mytid+1]; 10591eb62cbbSBarry Smith MPI_Allgather(&n,1,MPI_INT,aij->cowners+1,1,MPI_INT,comm); 10601eb62cbbSBarry Smith aij->cowners[0] = 0; 10611eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 10621eb62cbbSBarry Smith aij->cowners[i] += aij->cowners[i-1]; 10638a729477SBarry Smith } 10641eb62cbbSBarry Smith aij->cstart = aij->cowners[aij->mytid]; 10651eb62cbbSBarry Smith aij->cend = aij->cowners[aij->mytid+1]; 10668a729477SBarry Smith 10678a729477SBarry Smith 10681eb62cbbSBarry Smith ierr = MatCreateSequentialAIJ(m,n,d_nz,d_nnz,&aij->A); CHKERR(ierr); 1069a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 10701eb62cbbSBarry Smith ierr = MatCreateSequentialAIJ(m,N,o_nz,o_nnz,&aij->B); CHKERR(ierr); 1071a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 10728a729477SBarry Smith 10731eb62cbbSBarry Smith /* build cache for off array entries formed */ 10741eb62cbbSBarry Smith aij->stash.nmax = CHUNCKSIZE; /* completely arbratray number */ 10751eb62cbbSBarry Smith aij->stash.n = 0; 10761eb62cbbSBarry Smith aij->stash.array = (Scalar *) MALLOC( aij->stash.nmax*(2*sizeof(int) + 10771eb62cbbSBarry Smith sizeof(Scalar))); CHKPTR(aij->stash.array); 10781eb62cbbSBarry Smith aij->stash.idx = (int *) (aij->stash.array + aij->stash.nmax); 10791eb62cbbSBarry Smith aij->stash.idy = (int *) (aij->stash.idx + aij->stash.nmax); 10809e25ed09SBarry Smith aij->colmap = 0; 10819e25ed09SBarry Smith aij->garray = 0; 10828a729477SBarry Smith 10831eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 10841eb62cbbSBarry Smith aij->lvec = 0; 10851eb62cbbSBarry Smith aij->Mvctx = 0; 1086d6dfbf8fSBarry Smith aij->assembled = 0; 10878a729477SBarry Smith 1088d6dfbf8fSBarry Smith *newmat = mat; 1089d6dfbf8fSBarry Smith return 0; 1090d6dfbf8fSBarry Smith } 1091c74985f6SBarry Smith 109244a69424SLois Curfman McInnes static int MatCopy_MPIAIJ(Mat matin,Mat *newmat) 1093d6dfbf8fSBarry Smith { 1094d6dfbf8fSBarry Smith Mat mat; 109544a69424SLois Curfman McInnes Mat_MPIAIJ *aij,*oldmat = (Mat_MPIAIJ *) matin->data; 10966abc6512SBarry Smith int ierr; 1097d6dfbf8fSBarry Smith *newmat = 0; 1098d6dfbf8fSBarry Smith 1099d6dfbf8fSBarry Smith if (!oldmat->assembled) SETERR(1,"Cannot copy unassembled matrix"); 110044a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1101a5a9c739SBarry Smith PLogObjectCreate(mat); 110244a69424SLois Curfman McInnes mat->data = (void *) (aij = NEW(Mat_MPIAIJ)); CHKPTR(aij); 1103d6dfbf8fSBarry Smith mat->ops = &MatOps; 110444a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 110544a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1106d6dfbf8fSBarry Smith mat->factor = matin->factor; 1107d6dfbf8fSBarry Smith mat->row = 0; 1108d6dfbf8fSBarry Smith mat->col = 0; 1109d6dfbf8fSBarry Smith 1110d6dfbf8fSBarry Smith aij->m = oldmat->m; 1111d6dfbf8fSBarry Smith aij->n = oldmat->n; 1112d6dfbf8fSBarry Smith aij->M = oldmat->M; 1113d6dfbf8fSBarry Smith aij->N = oldmat->N; 1114d6dfbf8fSBarry Smith 1115d6dfbf8fSBarry Smith aij->assembled = 1; 1116d6dfbf8fSBarry Smith aij->rstart = oldmat->rstart; 1117d6dfbf8fSBarry Smith aij->rend = oldmat->rend; 1118d6dfbf8fSBarry Smith aij->cstart = oldmat->cstart; 1119d6dfbf8fSBarry Smith aij->cend = oldmat->cend; 1120d6dfbf8fSBarry Smith aij->numtids = oldmat->numtids; 1121d6dfbf8fSBarry Smith aij->mytid = oldmat->mytid; 1122d6dfbf8fSBarry Smith aij->insertmode = NotSetValues; 1123d6dfbf8fSBarry Smith 1124d6dfbf8fSBarry Smith aij->rowners = (int *) MALLOC( (aij->numtids+1)*sizeof(int) ); 1125d6dfbf8fSBarry Smith CHKPTR(aij->rowners); 1126d6dfbf8fSBarry Smith MEMCPY(aij->rowners,oldmat->rowners,(aij->numtids+1)*sizeof(int)); 1127d6dfbf8fSBarry Smith aij->stash.nmax = 0; 1128d6dfbf8fSBarry Smith aij->stash.n = 0; 1129d6dfbf8fSBarry Smith aij->stash.array= 0; 11309e25ed09SBarry Smith aij->colmap = 0; 11319e25ed09SBarry Smith aij->garray = 0; 1132d6dfbf8fSBarry Smith mat->comm = matin->comm; 1133d6dfbf8fSBarry Smith 1134d6dfbf8fSBarry Smith ierr = VecCreate(oldmat->lvec,&aij->lvec); CHKERR(ierr); 1135a5a9c739SBarry Smith PLogObjectParent(mat,aij->lvec); 1136d6dfbf8fSBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&aij->Mvctx); CHKERR(ierr); 1137a5a9c739SBarry Smith PLogObjectParent(mat,aij->Mvctx); 1138d6dfbf8fSBarry Smith ierr = MatCopy(oldmat->A,&aij->A); CHKERR(ierr); 1139a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 1140d6dfbf8fSBarry Smith ierr = MatCopy(oldmat->B,&aij->B); CHKERR(ierr); 1141a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 11428a729477SBarry Smith *newmat = mat; 11438a729477SBarry Smith return 0; 11448a729477SBarry Smith } 1145