xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision b1dff8820dc60cdbcbb1104a1dccf01ffc75bf59)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4170c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
6139566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
61498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6150587a0fcSBarry Smith             }
616c48de900SBarry Smith           } else col = in[j];
6178d76821aSHong Zhang           nonew = b->nonew;
618d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6191eb62cbbSBarry Smith         }
6201eb62cbbSBarry Smith       }
6215ef9f2a5SBarry Smith     } else {
62228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62390f02eecSBarry Smith       if (!aij->donotstash) {
6245080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
625d36fbae8SSatish Balay         if (roworiented) {
6268e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
627d36fbae8SSatish Balay         } else {
6288e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6294b0e389bSBarry Smith         }
6301eb62cbbSBarry Smith       }
6318a729477SBarry Smith     }
63290f02eecSBarry Smith   }
6335519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6368a729477SBarry Smith }
6378a729477SBarry Smith 
6382b08fdbeSandi selinger /*
639904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6402b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
641904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6422b08fdbeSandi selinger */
643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
644d71ae5a4SJacob Faibussowitsch {
645904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
646904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6474cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
648904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
649904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
650904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
651904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
652904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6536dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
654904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
655904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
656904d1e70Sandi selinger 
657904d1e70Sandi selinger   PetscFunctionBegin;
658904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
659904d1e70Sandi selinger   for (j = 0; j < am; j++) {
660904d1e70Sandi selinger     dnz = onz = 0;
661904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6626dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
663904d1e70Sandi selinger       /* If column is in the diagonal */
664904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
665904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
666904d1e70Sandi selinger         dnz++;
667904d1e70Sandi selinger       } else { /* off-diagonal entries */
668904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
669904d1e70Sandi selinger         onz++;
670904d1e70Sandi selinger       }
671904d1e70Sandi selinger     }
672904d1e70Sandi selinger     ailen[j] = dnz;
673904d1e70Sandi selinger     bilen[j] = onz;
674904d1e70Sandi selinger   }
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676904d1e70Sandi selinger }
677904d1e70Sandi selinger 
678904d1e70Sandi selinger /*
679904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
680904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6811de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6821de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6831de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
684904d1e70Sandi selinger */
685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
686d71ae5a4SJacob Faibussowitsch {
6873a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6883a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6894cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
690f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6923a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6933a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6943a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6953a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6966dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6971de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
698904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
699904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
7003a063d27Sandi selinger 
7013a063d27Sandi selinger   PetscFunctionBegin;
7023a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7033a063d27Sandi selinger   for (j = 0; j < am; j++) {
704904d1e70Sandi selinger     dnz_row = onz_row = 0;
705904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
706904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
707e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
708e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
709ae8e66a0Sandi selinger       /* If column is in the diagonal */
7103a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
711904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
712904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
713904d1e70Sandi selinger         dnz_row++;
714ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
715904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
716904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
717904d1e70Sandi selinger         onz_row++;
7183a063d27Sandi selinger       }
7193a063d27Sandi selinger     }
720904d1e70Sandi selinger     ailen[j] = dnz_row;
721904d1e70Sandi selinger     bilen[j] = onz_row;
7223a063d27Sandi selinger   }
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7243a063d27Sandi selinger }
7253a063d27Sandi selinger 
726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
727d71ae5a4SJacob Faibussowitsch {
728b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
729d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
730d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
731b49de8d1SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
733b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
737b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
738b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
74054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
741b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
742b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7439566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
744fa852ad4SSatish Balay       } else {
74548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
747eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
748fa46199cSSatish Balay         col--;
749b1fc9764SSatish Balay #else
750905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
751b1fc9764SSatish Balay #endif
752e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
754b49de8d1SLois Curfman McInnes       }
755b49de8d1SLois Curfman McInnes     }
756b49de8d1SLois Curfman McInnes   }
7573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
758b49de8d1SLois Curfman McInnes }
759bc5ccf88SSatish Balay 
760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
761d71ae5a4SJacob Faibussowitsch {
762bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
763b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
764bc5ccf88SSatish Balay 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7663ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
767bc5ccf88SSatish Balay 
7689566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7699566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772bc5ccf88SSatish Balay }
773bc5ccf88SSatish Balay 
774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
775d71ae5a4SJacob Faibussowitsch {
776bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
777b1d57f15SBarry Smith   PetscMPIInt  n;
778b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
779e44c0bd4SBarry Smith   PetscInt    *row, *col;
780ace3abfcSBarry Smith   PetscBool    other_disassembled;
78187828ca2SBarry Smith   PetscScalar *val;
782bc5ccf88SSatish Balay 
78391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7846e111a19SKarl Rupp 
785bc5ccf88SSatish Balay   PetscFunctionBegin;
7864cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
787a2d1c673SSatish Balay     while (1) {
7889566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
789a2d1c673SSatish Balay       if (!flg) break;
790a2d1c673SSatish Balay 
791bc5ccf88SSatish Balay       for (i = 0; i < n;) {
792bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7932205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7942205254eSKarl Rupp           if (row[j] != rstart) break;
7952205254eSKarl Rupp         }
796bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
797bc5ccf88SSatish Balay         else ncols = n - i;
798bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7999566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
800bc5ccf88SSatish Balay         i = j;
801bc5ccf88SSatish Balay       }
802bc5ccf88SSatish Balay     }
8039566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
804bc5ccf88SSatish Balay   }
8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
806c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8079ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8089ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8109566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8119ecce9b1SRichard Tran Mills   }
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
815bc5ccf88SSatish Balay 
816bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
817071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
818bc5ccf88SSatish Balay   /*
819bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
820bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
821bc5ccf88SSatish Balay   */
822bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
823462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
82435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
825eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
826ad59fb31SSatish Balay     }
827ad59fb31SSatish Balay   }
82848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
831c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
832e2cf4d64SStefano Zampini #endif
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
835bc5ccf88SSatish Balay 
8369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8372205254eSKarl Rupp 
838f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
839a30b2313SHong Zhang 
8409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
841e56f5c9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
843f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
845462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
848c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
849e2cf4d64SStefano Zampini #endif
8503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
851bc5ccf88SSatish Balay }
852bc5ccf88SSatish Balay 
853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
854d71ae5a4SJacob Faibussowitsch {
85544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8563a40ed3dSBarry Smith 
8573a40ed3dSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8599566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8611eb62cbbSBarry Smith }
8621eb62cbbSBarry Smith 
863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
864d71ae5a4SJacob Faibussowitsch {
8651b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8661b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8676e520ac8SStefano Zampini   PetscInt    r, len;
8689939a2d1SBarry Smith   PetscBool   cong;
8691eb62cbbSBarry Smith 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
8716e520ac8SStefano Zampini   /* get locally owned rows */
8729566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8739566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
874dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87597b48c8fSBarry Smith   if (x && b) {
8761b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8771b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8781b1dd7adSMatthew G. Knepley 
87928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8819566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8821b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88597b48c8fSBarry Smith   }
886a92ad425SStefano Zampini 
887a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
890a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
892a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
893a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
894a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
895a92ad425SStefano Zampini 
896a92ad425SStefano Zampini     nnwA = aijA->nonew;
897a92ad425SStefano Zampini     nnwB = aijB->nonew;
898a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
899a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
900a92ad425SStefano Zampini     if (!nnzA) {
9019566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
902a92ad425SStefano Zampini       aijA->nonew = 0;
903a92ad425SStefano Zampini     }
904a92ad425SStefano Zampini     if (!nnzB) {
9059566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
906a92ad425SStefano Zampini       aijB->nonew = 0;
907a92ad425SStefano Zampini     }
908a92ad425SStefano Zampini     /* Must zero here before the next loop */
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9109566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9111b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9121b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
913a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9149566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
915e2d53e46SBarry Smith     }
916a92ad425SStefano Zampini     aijA->nonew = nnwA;
917a92ad425SStefano Zampini     aijB->nonew = nnwB;
9186eb55b6aSBarry Smith   } else {
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9209566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9216eb55b6aSBarry Smith   }
9229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9254f9cfa9eSBarry Smith 
9269939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
927f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9289939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
929462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9309939a2d1SBarry Smith   }
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9321eb62cbbSBarry Smith }
9331eb62cbbSBarry Smith 
934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
935d71ae5a4SJacob Faibussowitsch {
9369c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9376497c311SBarry Smith   PetscInt           n = A->rmap->n;
938131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
940131c27b5Sprj-   PetscMPIInt        p = 0;
94154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94254bd4135SMatthew G. Knepley   PetscSF            sf;
9439c7c4993SBarry Smith   const PetscScalar *xx;
944fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
945564f14d6SBarry Smith   Vec                xmask, lmask;
946564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
947564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
948564f14d6SBarry Smith   PetscScalar       *aa;
9499c7c4993SBarry Smith 
9509c7c4993SBarry Smith   PetscFunctionBegin;
95154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
957aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9585ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9599566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9605ba17502SJed Brown     }
96154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9639c7c4993SBarry Smith   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
97054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9719371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9729371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
973564f14d6SBarry Smith   /* zero diagonal part of matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9754cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9779566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
984a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
985a92ad425SStefano Zampini     PetscBool cong;
986a92ad425SStefano Zampini 
9879566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
993377aa5a1SBarry Smith   }
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9954cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
997564f14d6SBarry Smith   ii = aij->i;
9988e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
999564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
1000564f14d6SBarry Smith   if (aij->compressedrow.use) {
1001564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1002564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1003564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1004564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1005564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1006564f14d6SBarry Smith       aj = aij->j + ii[i];
1007fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1008564f14d6SBarry Smith 
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith       ridx++;
1018564f14d6SBarry Smith     }
1019564f14d6SBarry Smith   } else { /* do not use compressed row format */
1020564f14d6SBarry Smith     m = l->B->rmap->n;
1021564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1022564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1023564f14d6SBarry Smith       aj = aij->j + ii[i];
1024fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1025564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1027377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1028564f14d6SBarry Smith           *aa = 0.0;
1029564f14d6SBarry Smith         }
1030564f14d6SBarry Smith         aa++;
1031564f14d6SBarry Smith         aj++;
1032564f14d6SBarry Smith       }
1033564f14d6SBarry Smith     }
1034564f14d6SBarry Smith   }
1035a92ad425SStefano Zampini   if (x && b) {
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1038377aa5a1SBarry Smith   }
10399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10434f9cfa9eSBarry Smith 
10444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1045f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1047462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10484f9cfa9eSBarry Smith   }
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10509c7c4993SBarry Smith }
10519c7c4993SBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1053d71ae5a4SJacob Faibussowitsch {
1054416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055b1d57f15SBarry Smith   PetscInt    nt;
105619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1057416022c9SBarry Smith 
10583a40ed3dSBarry Smith   PetscFunctionBegin;
10599566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
106008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1062296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1064296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10661eb62cbbSBarry Smith }
10671eb62cbbSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1069d71ae5a4SJacob Faibussowitsch {
1070bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071bd0c2dcbSBarry Smith 
1072bd0c2dcbSBarry Smith   PetscFunctionBegin;
10739566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075bd0c2dcbSBarry Smith }
1076bd0c2dcbSBarry Smith 
1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1078d71ae5a4SJacob Faibussowitsch {
1079416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
108001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10813a40ed3dSBarry Smith 
10823a40ed3dSBarry Smith   PetscFunctionBegin;
10839566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10849566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088da3a660dSBarry Smith }
1089da3a660dSBarry Smith 
1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1091d71ae5a4SJacob Faibussowitsch {
1092416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1093da3a660dSBarry Smith 
10943a40ed3dSBarry Smith   PetscFunctionBegin;
1095da3a660dSBarry Smith   /* do nondiagonal part */
10969566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1097da3a660dSBarry Smith   /* do local part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10999613dc34SJunchao Zhang   /* add partial results together */
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1103da3a660dSBarry Smith }
1104da3a660dSBarry Smith 
1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1106d71ae5a4SJacob Faibussowitsch {
11074f423910Svictorle   MPI_Comm    comm;
1108ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1109ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1110cd0d46ebSvictorle   IS          Me, Notme;
1111b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111254d735aeSStefano Zampini   PetscBool   lf;
1113b1d57f15SBarry Smith   PetscMPIInt size;
1114cd0d46ebSvictorle 
1115cd0d46ebSvictorle   PetscFunctionBegin;
111642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1118462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11193ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11223ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112342e5f5b4Svictorle 
11247dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1128cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1129cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113366501d38Svictorle   Aoff = Aoffs[0];
11349566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113566501d38Svictorle   Boff = Boffs[0];
11369566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11389566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11419566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1143cd0d46ebSvictorle }
1144cd0d46ebSvictorle 
1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1146d71ae5a4SJacob Faibussowitsch {
1147416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1148da3a660dSBarry Smith 
11493a40ed3dSBarry Smith   PetscFunctionBegin;
1150da3a660dSBarry Smith   /* do nondiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1152da3a660dSBarry Smith   /* do local part */
11539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11549613dc34SJunchao Zhang   /* add partial results together */
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11569566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158da3a660dSBarry Smith }
1159da3a660dSBarry Smith 
11601eb62cbbSBarry Smith /*
11611eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11621eb62cbbSBarry Smith    diagonal block
11631eb62cbbSBarry Smith */
1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1165d71ae5a4SJacob Faibussowitsch {
1166416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
116908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1170aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11719566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11731eb62cbbSBarry Smith }
11741eb62cbbSBarry Smith 
1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1176d71ae5a4SJacob Faibussowitsch {
1177052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11783a40ed3dSBarry Smith 
11793a40ed3dSBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11819566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1183052efed2SBarry Smith }
1184052efed2SBarry Smith 
1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1186d71ae5a4SJacob Faibussowitsch {
11878e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11898e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11903ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11912e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119317a3732bSBarry Smith   PetscInt64         nz, hnz;
11943ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11953ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11963ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119717a3732bSBarry Smith   PetscMPIInt        rank;
11988e2fed03SBarry Smith 
11998e2fed03SBarry Smith   PetscFunctionBegin;
12009566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12013ea6fe3dSLisandro Dalcin 
12023ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12033ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12043ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12053ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12063ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12078e2fed03SBarry Smith   nz = A->nz + B->nz;
12083ea6fe3dSLisandro Dalcin 
12093ea6fe3dSLisandro Dalcin   /* write matrix header */
12100700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12119371c9d4SSatish Balay   header[1] = M;
12129371c9d4SSatish Balay   header[2] = N;
121317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1215835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12203ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12238e2fed03SBarry Smith 
12243ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12263ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12273ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12283ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12293ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12308e2fed03SBarry Smith     }
12319371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12329371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12338e2fed03SBarry Smith   }
123417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12378e2fed03SBarry Smith 
12383ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12423ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12433ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12443ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12452e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12468e2fed03SBarry Smith     }
12479371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12489371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12498e2fed03SBarry Smith   }
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125217a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12558e2fed03SBarry Smith 
12563ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12579566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12598e2fed03SBarry Smith }
12608e2fed03SBarry Smith 
12619804daf3SBarry Smith #include <petscdraw.h>
1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1263d71ae5a4SJacob Faibussowitsch {
126444a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126532dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1266ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1267b0a32e0cSBarry Smith   PetscViewer       sviewer;
1268f3ef73ceSBarry Smith   PetscViewerFormat format;
1269416022c9SBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
127432077d6dSBarry Smith   if (iascii) {
12759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1276ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12771690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1280835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1281ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1282ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1283ef5fdb51SBarry Smith         navg += nz[i];
1284ef5fdb51SBarry Smith       }
12859566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1286ef5fdb51SBarry Smith       navg = navg / size;
12879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1289ef5fdb51SBarry Smith     }
12909566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1291456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12924e220ebcSLois Curfman McInnes       MatInfo   info;
12936335e310SSatish Balay       PetscInt *inodes = NULL;
1294923f20ffSKris Buschelman 
12959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12969566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12979566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1299923f20ffSKris Buschelman       if (!inodes) {
13009371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1301835f2295SStefano Zampini                                                      info.memory));
13026831982aSBarry Smith       } else {
1303835f2295SStefano Zampini         PetscCall(
1304835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13056831982aSBarry Smith       }
13069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1315fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1316923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13179566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1318923f20ffSKris Buschelman       if (inodes) {
13199566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1320d38fa0fbSBarry Smith       } else {
13219566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1322d38fa0fbSBarry Smith       }
13233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13244aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132608480c60SBarry Smith     }
13278e2fed03SBarry Smith   } else if (isbinary) {
13288e2fed03SBarry Smith     if (size == 1) {
13299566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13309566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13318e2fed03SBarry Smith     } else {
13329566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13338e2fed03SBarry Smith     }
13343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
133571e56450SStefano Zampini   } else if (iascii && size == 1) {
13369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13379566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13390f5bd95cSBarry Smith   } else if (isdraw) {
1340b0a32e0cSBarry Smith     PetscDraw draw;
1341ace3abfcSBarry Smith     PetscBool isnull;
13429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134519bcc07fSBarry Smith   }
134619bcc07fSBarry Smith 
134771e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134871e56450SStefano Zampini     Mat A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow, iscol;
13502ee70a88SLois Curfman McInnes 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13549566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135571e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135671e56450SStefano Zampini     /*
135771e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135871e56450SStefano Zampini     IS  isrow,iscol;
135971e56450SStefano Zampini 
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13619566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1363dd400576SPatrick Sanan     if (rank == 0) {
13649566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136571e56450SStefano Zampini        A    = AA[0];
136671e56450SStefano Zampini        Av   = AA[0];
136795373324SBarry Smith     }
13689566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136971e56450SStefano Zampini */
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137255843e3eSBarry Smith     /*
137355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1374b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137555843e3eSBarry Smith     */
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1377dd400576SPatrick Sanan     if (rank == 0) {
137848a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13799566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
138095373324SBarry Smith     }
13819566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138395373324SBarry Smith   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13851eb62cbbSBarry Smith }
13861eb62cbbSBarry Smith 
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1388d71ae5a4SJacob Faibussowitsch {
1389ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1390416022c9SBarry Smith 
13913a40ed3dSBarry Smith   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139648a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398416022c9SBarry Smith }
1399416022c9SBarry Smith 
1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1401d71ae5a4SJacob Faibussowitsch {
140244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1403f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1404ace3abfcSBarry Smith   PetscBool   hasop;
14058a729477SBarry Smith 
14063a40ed3dSBarry Smith   PetscFunctionBegin;
1407a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14089566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1410a2b30743SBarry Smith   }
1411a2b30743SBarry Smith 
141248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14134e980039SJed Brown 
1414c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang 
14202798e883SHong Zhang     while (its--) {
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14232798e883SHong Zhang 
1424c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14272798e883SHong Zhang 
1428c14dc6b6SHong Zhang       /* local sweep */
14299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14302798e883SHong Zhang     }
14313a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1432da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14342798e883SHong Zhang       its--;
1435da3a660dSBarry Smith     }
14362798e883SHong Zhang     while (its--) {
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14392798e883SHong Zhang 
1440c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1443c14dc6b6SHong Zhang 
1444c14dc6b6SHong Zhang       /* local sweep */
14459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14462798e883SHong Zhang     }
14473a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1448da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14502798e883SHong Zhang       its--;
1451da3a660dSBarry Smith     }
14522798e883SHong Zhang     while (its--) {
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14552798e883SHong Zhang 
1456c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14579566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14592798e883SHong Zhang 
1460c14dc6b6SHong Zhang       /* local sweep */
14619566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14622798e883SHong Zhang     }
1463a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1464a7420bb7SBarry Smith     Vec xx1;
1465a7420bb7SBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1468a7420bb7SBarry Smith 
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1471a7420bb7SBarry Smith     if (!mat->diag) {
14729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1474a7420bb7SBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1476bd0c2dcbSBarry Smith     if (hasop) {
14779566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1478bd0c2dcbSBarry Smith     } else {
14799566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1480bd0c2dcbSBarry Smith     }
14819566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1482887ee2caSBarry Smith 
14839566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1484a7420bb7SBarry Smith 
1485a7420bb7SBarry Smith     /* local sweep */
14869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1489ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1490c14dc6b6SHong Zhang 
14919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1492a0808db4SHong Zhang 
14937b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14958a729477SBarry Smith }
1496a66be287SLois Curfman McInnes 
1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1498d71ae5a4SJacob Faibussowitsch {
149972e6a0cfSJed Brown   Mat             aA, aB, Aperm;
150072e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150172e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150272e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150372e6a0cfSJed Brown   PetscSF         rowsf, sf;
15040298fd71SBarry Smith   IS              parcolp = NULL;
150572e6a0cfSJed Brown   PetscBool       done;
150642e855d1Svictor 
150742e855d1Svictor   PetscFunctionBegin;
15089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151272e6a0cfSJed Brown 
151372e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151772e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
152072e6a0cfSJed Brown 
152172e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152572e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152972e6a0cfSJed Brown 
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15329566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153372e6a0cfSJed Brown 
153472e6a0cfSJed Brown   /* Find out where my gcols should go */
15359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154372e6a0cfSJed Brown 
15449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15469566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154772e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1548131c27b5Sprj-     PetscInt    row = rdest[i];
1549131c27b5Sprj-     PetscMPIInt rowner;
15509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155172e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1552131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1553131c27b5Sprj-       PetscMPIInt cowner;
15549566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155672e6a0cfSJed Brown       else onnz[i]++;
155772e6a0cfSJed Brown     }
155872e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1559131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1560131c27b5Sprj-       PetscMPIInt cowner;
15619566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156272e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156372e6a0cfSJed Brown       else onnz[i]++;
156472e6a0cfSJed Brown     }
156572e6a0cfSJed Brown   }
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15709566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157172e6a0cfSJed Brown 
15729566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157572e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157672e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1577970468b0SJed Brown     PetscInt  j0, rowlen;
157872e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1584970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1585970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15869566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1587970468b0SJed Brown     }
158872e6a0cfSJed Brown   }
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15979566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15989566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159972e6a0cfSJed Brown   *B = Aperm;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160142e855d1Svictor }
160242e855d1Svictor 
1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1604d71ae5a4SJacob Faibussowitsch {
1605c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1606c5e4d11fSDmitry Karpeev 
1607c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1609c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611c5e4d11fSDmitry Karpeev }
1612c5e4d11fSDmitry Karpeev 
1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1614d71ae5a4SJacob Faibussowitsch {
1615a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1616a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16173966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1618a66be287SLois Curfman McInnes 
16193a40ed3dSBarry Smith   PetscFunctionBegin;
16204e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16222205254eSKarl Rupp 
16239371c9d4SSatish Balay   isend[0] = info->nz_used;
16249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16269371c9d4SSatish Balay   isend[3] = info->memory;
16279371c9d4SSatish Balay   isend[4] = info->mallocs;
16282205254eSKarl Rupp 
16299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16302205254eSKarl Rupp 
16319371c9d4SSatish Balay   isend[0] += info->nz_used;
16329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16349371c9d4SSatish Balay   isend[3] += info->memory;
16359371c9d4SSatish Balay   isend[4] += info->mallocs;
1636a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1642a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1643462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16442205254eSKarl Rupp 
16454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1650a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1651462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16522205254eSKarl Rupp 
16534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1658a66be287SLois Curfman McInnes   }
16594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a66be287SLois Curfman McInnes }
1664a66be287SLois Curfman McInnes 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1666d71ae5a4SJacob Faibussowitsch {
1667c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1668c74985f6SBarry Smith 
16693a40ed3dSBarry Smith   PetscFunctionBegin;
167012c028f9SKris Buschelman   switch (op) {
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1674a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16760ad02fcaSStefano Zampini   case MAT_USE_INODES:
167712c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16781a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1679fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168212c028f9SKris Buschelman     break;
168312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168443674050SBarry Smith     MatCheckPreallocated(A, 1);
16854e0d8c25SBarry Smith     a->roworiented = flg;
16862205254eSKarl Rupp 
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168912c028f9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1691d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1694ffa07934SHong Zhang   case MAT_SPD:
169577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1697bf108f30SBarry Smith   case MAT_HERMITIAN:
1698bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1700b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1701b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17029725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170377e54ba9SKris Buschelman     break;
1704d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1705d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1706d71ae5a4SJacob Faibussowitsch     break;
1707d71ae5a4SJacob Faibussowitsch   default:
1708888c827cSStefano Zampini     break;
17093a40ed3dSBarry Smith   }
17103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1711c74985f6SBarry Smith }
1712c74985f6SBarry Smith 
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1714d71ae5a4SJacob Faibussowitsch {
1715154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1717d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1718d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1719b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172039e00950SLois Curfman McInnes 
17213a40ed3dSBarry Smith   PetscFunctionBegin;
172228b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17237a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17247a0afa10SBarry Smith 
172570f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17267a0afa10SBarry Smith     /*
17277a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17287a0afa10SBarry Smith     */
17297a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1730b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1731d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17327a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17332205254eSKarl Rupp       if (max < tmp) max = tmp;
17347a0afa10SBarry Smith     }
17359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17367a0afa10SBarry Smith   }
17377a0afa10SBarry Smith 
1738aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1739abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174039e00950SLois Curfman McInnes 
17419371c9d4SSatish Balay   pvA = &vworkA;
17429371c9d4SSatish Balay   pcA = &cworkA;
17439371c9d4SSatish Balay   pvB = &vworkB;
17449371c9d4SSatish Balay   pcB = &cworkB;
17459371c9d4SSatish Balay   if (!v) {
17469371c9d4SSatish Balay     pvA = NULL;
17479371c9d4SSatish Balay     pvB = NULL;
17489371c9d4SSatish Balay   }
17499371c9d4SSatish Balay   if (!idx) {
17509371c9d4SSatish Balay     pcA = NULL;
17519371c9d4SSatish Balay     if (!v) pcB = NULL;
17529371c9d4SSatish Balay   }
17539566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17549566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1755154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1756154123eaSLois Curfman McInnes 
175770f0671dSBarry Smith   cmap = mat->garray;
1758154123eaSLois Curfman McInnes   if (v || idx) {
1759154123eaSLois Curfman McInnes     if (nztot) {
1760154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1761b1d57f15SBarry Smith       PetscInt imark = -1;
1762154123eaSLois Curfman McInnes       if (v) {
176370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176439e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1766154123eaSLois Curfman McInnes           else break;
1767154123eaSLois Curfman McInnes         }
1768154123eaSLois Curfman McInnes         imark = i;
176970f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177070f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1771154123eaSLois Curfman McInnes       }
1772154123eaSLois Curfman McInnes       if (idx) {
177370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177470f0671dSBarry Smith         if (imark > -1) {
1775ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177670f0671dSBarry Smith         } else {
1777154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177870f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1779154123eaSLois Curfman McInnes             else break;
1780154123eaSLois Curfman McInnes           }
1781154123eaSLois Curfman McInnes           imark = i;
178270f0671dSBarry Smith         }
178370f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178470f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178539e00950SLois Curfman McInnes       }
17863f97c4b0SBarry Smith     } else {
1787f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1788f4259b30SLisandro Dalcin       if (v) *v = NULL;
17891ca473b0SSatish Balay     }
1790154123eaSLois Curfman McInnes   }
179139e00950SLois Curfman McInnes   *nz = nztot;
17929566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17939566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179539e00950SLois Curfman McInnes }
179639e00950SLois Curfman McInnes 
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1798d71ae5a4SJacob Faibussowitsch {
17997a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18003a40ed3dSBarry Smith 
18013a40ed3dSBarry Smith   PetscFunctionBegin;
180228b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18037a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180539e00950SLois Curfman McInnes }
180639e00950SLois Curfman McInnes 
1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1808d71ae5a4SJacob Faibussowitsch {
1809855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1810ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1811d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1812329f5518SBarry Smith   PetscReal        sum = 0.0;
1813fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181404ca555eSLois Curfman McInnes 
18153a40ed3dSBarry Smith   PetscFunctionBegin;
181617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18179566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181837fa93a5SLois Curfman McInnes   } else {
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1822fff043a9SJunchao Zhang       v = amata;
182304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18249371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18259371c9d4SSatish Balay         v++;
182604ca555eSLois Curfman McInnes       }
1827fff043a9SJunchao Zhang       v = bmata;
182804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18299371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18309371c9d4SSatish Balay         v++;
183104ca555eSLois Curfman McInnes       }
1832462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18338f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18349566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18353a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1836e91c04dfSPierre Jolivet       PetscReal *tmp;
1837b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18389566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
183904ca555eSLois Curfman McInnes       *norm = 0.0;
18409371c9d4SSatish Balay       v     = amata;
18419371c9d4SSatish Balay       jj    = amat->j;
184204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18439371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18449371c9d4SSatish Balay         v++;
184504ca555eSLois Curfman McInnes       }
18469371c9d4SSatish Balay       v  = bmata;
18479371c9d4SSatish Balay       jj = bmat->j;
184804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18499371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18509371c9d4SSatish Balay         v++;
185104ca555eSLois Curfman McInnes       }
1852e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1853d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1854e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
185504ca555eSLois Curfman McInnes       }
18569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18579566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18583a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1859329f5518SBarry Smith       PetscReal ntemp = 0.0;
1860d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18618e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186204ca555eSLois Curfman McInnes         sum = 0.0;
186304ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18649371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18659371c9d4SSatish Balay           v++;
186604ca555eSLois Curfman McInnes         }
18678e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186804ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18699371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18709371c9d4SSatish Balay           v++;
187104ca555eSLois Curfman McInnes         }
1872515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187304ca555eSLois Curfman McInnes       }
1874462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18759566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1876ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187937fa93a5SLois Curfman McInnes   }
18803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1881855ac2c5SLois Curfman McInnes }
1882855ac2c5SLois Curfman McInnes 
1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1884d71ae5a4SJacob Faibussowitsch {
1885a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1886a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1887071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1888071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1889a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1890ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1891b7c46309SBarry Smith 
18923a40ed3dSBarry Smith   PetscFunctionBegin;
18937fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18949371c9d4SSatish Balay   ma = A->rmap->n;
18959371c9d4SSatish Balay   na = A->cmap->n;
18969371c9d4SSatish Balay   mb = a->B->rmap->n;
18979371c9d4SSatish Balay   nb = a->B->cmap->n;
18989371c9d4SSatish Balay   ai = Aloc->i;
18999371c9d4SSatish Balay   aj = Aloc->j;
19009371c9d4SSatish Balay   bi = Bloc->i;
19019371c9d4SSatish Balay   bj = Bloc->j;
1902fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190380bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190480bcc5a1SJed Brown     PetscSFNode         *oloc;
1905713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190680bcc5a1SJed Brown 
19079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190880bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1910cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191180bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191380bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191480bcc5a1SJed Brown     /* map those to global */
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19219566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1922d4bb536fSBarry Smith 
19239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
192558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs));
19269566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19289566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1929fc4dec0aSBarry Smith   } else {
1930fc4dec0aSBarry Smith     B = *matout;
19319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1932fc4dec0aSBarry Smith   }
1933b7c46309SBarry Smith 
1934f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1935a8661f62Sandi selinger   A_diag      = a->A;
1936a8661f62Sandi selinger   B_diag      = &b->A;
1937a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1938a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1939a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1940a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1941f79cb1a0Sandi selinger 
1942f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1943ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1944f79cb1a0Sandi selinger 
19454cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1946a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19477fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19489566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1949f79cb1a0Sandi selinger 
1950b7c46309SBarry Smith   /* copy over the B part */
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1953ce496241SStefano Zampini   pbv = bv;
1954d0f46423SBarry Smith   row = A->rmap->rstart;
19552205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195661a2fbbaSHong Zhang   cols_tmp = cols;
1957da668accSHong Zhang   for (i = 0; i < mb; i++) {
1958da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19599566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19602205254eSKarl Rupp     row++;
1961720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1962720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1963b7c46309SBarry Smith   }
19649566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1966fc73b1b3SBarry Smith 
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1969cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19700de55854SLois Curfman McInnes     *matout = B;
19710de55854SLois Curfman McInnes   } else {
19729566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19730de55854SLois Curfman McInnes   }
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975b7c46309SBarry Smith }
1976b7c46309SBarry Smith 
1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1978d71ae5a4SJacob Faibussowitsch {
19794b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19804b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1981b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1982a008b906SSatish Balay 
19833a40ed3dSBarry Smith   PetscFunctionBegin;
19849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19854b967eb1SSatish Balay   if (rr) {
19869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198708401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19884b967eb1SSatish Balay     /* Overlap communication with computation. */
19899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1990a008b906SSatish Balay   }
19914b967eb1SSatish Balay   if (ll) {
19929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199308401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1994dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19954b967eb1SSatish Balay   }
19964b967eb1SSatish Balay   /* scale  the diagonal block */
1997dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19984b967eb1SSatish Balay 
19994b967eb1SSatish Balay   if (rr) {
20004b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20019566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2002dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20034b967eb1SSatish Balay   }
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005a008b906SSatish Balay }
2006a008b906SSatish Balay 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2008d71ae5a4SJacob Faibussowitsch {
2009bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20103a40ed3dSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2014bb5a7306SBarry Smith }
2015bb5a7306SBarry Smith 
2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2017d71ae5a4SJacob Faibussowitsch {
2018d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2019d4bb536fSBarry Smith   Mat         a, b, c, d;
2020ace3abfcSBarry Smith   PetscBool   flg;
2021d4bb536fSBarry Smith 
20223a40ed3dSBarry Smith   PetscFunctionBegin;
20239371c9d4SSatish Balay   a = matA->A;
20249371c9d4SSatish Balay   b = matA->B;
20259371c9d4SSatish Balay   c = matB->A;
20269371c9d4SSatish Balay   d = matB->B;
2027d4bb536fSBarry Smith 
20289566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2030462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2032d4bb536fSBarry Smith }
2033d4bb536fSBarry Smith 
2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2035d71ae5a4SJacob Faibussowitsch {
2036cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2037cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2038cb5b572fSBarry Smith 
2039cb5b572fSBarry Smith   PetscFunctionBegin;
204033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204133f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2042cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2043cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2044cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2045cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2046cb5b572fSBarry Smith        then copying the submatrices */
20479566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2048cb5b572fSBarry Smith   } else {
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2051cb5b572fSBarry Smith   }
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2054cb5b572fSBarry Smith }
2055cb5b572fSBarry Smith 
2056001ddc4fSHong Zhang /*
2057001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2058001ddc4fSHong Zhang    have different nonzero structure.
2059001ddc4fSHong Zhang */
2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2061d71ae5a4SJacob Faibussowitsch {
2062001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206395b7e79eSJed Brown 
206495b7e79eSJed Brown   PetscFunctionBegin;
206595b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206695b7e79eSJed Brown   for (i = 0; i < m; i++) {
20678e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2068001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2069001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207095b7e79eSJed Brown     nnz[i] = 0;
207195b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2072001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2073001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207495b7e79eSJed Brown       nnz[i]++;
207595b7e79eSJed Brown     }
207695b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207795b7e79eSJed Brown   }
20783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207995b7e79eSJed Brown }
208095b7e79eSJed Brown 
2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2083d71ae5a4SJacob Faibussowitsch {
2084001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2087001ddc4fSHong Zhang 
2088001ddc4fSHong Zhang   PetscFunctionBegin;
20899566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2091001ddc4fSHong Zhang }
2092001ddc4fSHong Zhang 
2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2094d71ae5a4SJacob Faibussowitsch {
2095ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2096ac90fabeSBarry Smith 
2097ac90fabeSBarry Smith   PetscFunctionBegin;
2098ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2101ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2103ac90fabeSBarry Smith   } else {
21049f5f6813SShri Abhyankar     Mat       B;
21059f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2106d9d719b4SStefano Zampini 
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21179566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2120ac90fabeSBarry Smith   }
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122ac90fabeSBarry Smith }
2123ac90fabeSBarry Smith 
21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2125354c94deSBarry Smith 
2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2127d71ae5a4SJacob Faibussowitsch {
21285f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21295f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2130354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2131354c94deSBarry Smith 
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21339566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21345f80ce2aSJacob Faibussowitsch   }
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2136354c94deSBarry Smith }
2137354c94deSBarry Smith 
2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2139d71ae5a4SJacob Faibussowitsch {
214099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214199cafbc1SBarry Smith 
214299cafbc1SBarry Smith   PetscFunctionBegin;
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21449566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214699cafbc1SBarry Smith }
214799cafbc1SBarry Smith 
2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2149d71ae5a4SJacob Faibussowitsch {
215099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215199cafbc1SBarry Smith 
215299cafbc1SBarry Smith   PetscFunctionBegin;
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21549566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215699cafbc1SBarry Smith }
215799cafbc1SBarry Smith 
2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2159d71ae5a4SJacob Faibussowitsch {
2160c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2161475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216262e5df07SMark Adams   PetscScalar       *vv;
2163475b8b61SHong Zhang   Vec                vB, vA;
216462e5df07SMark Adams   const PetscScalar *va, *vb;
2165c91732d9SHong Zhang 
2166c91732d9SHong Zhang   PetscFunctionBegin;
2167c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2169475b8b61SHong Zhang 
217062e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2171c91732d9SHong Zhang   if (idx) {
2172475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2173d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2174c91732d9SHong Zhang     }
2175c91732d9SHong Zhang   }
2176c91732d9SHong Zhang 
2177c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21799566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2180c91732d9SHong Zhang 
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2183475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2184c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2185475b8b61SHong Zhang       vv[i] = vb[i];
2186c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2187475b8b61SHong Zhang     } else {
2188475b8b61SHong Zhang       vv[i] = va[i];
21899371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2190c91732d9SHong Zhang     }
2191c91732d9SHong Zhang   }
219262e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219362e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21959566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199c91732d9SHong Zhang }
2200c91732d9SHong Zhang 
2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2202eede4a3fSMark Adams {
2203eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2789f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
2793d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2794c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27993acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2800b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28075bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28086cff0a6bSPierre Jolivet                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
281526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28234222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28262fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
28355494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
28373b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2838d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
2840c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
2842f4259b30SLisandro Dalcin                                        NULL,
2843b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2848f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2849a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2850bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2851a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28527dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
2856187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
28669c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2867a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28684222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2869f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2870f4259b30SLisandro Dalcin                                        NULL,
287172833a62Smarkadams4                                        NULL,
287272833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28732d776b49SBarry Smith                                        NULL,
2874dec0b466SHong Zhang                                        /*150*/ NULL,
2875eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28764cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
287742ce410bSJunchao Zhang                                        NULL,
287842ce410bSJunchao Zhang                                        NULL,
2879fe1fc275SAlexander                                        /*155*/ NULL,
2880fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
288136ce4990SBarry Smith 
2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2883d71ae5a4SJacob Faibussowitsch {
28842e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28852e8a6d31SBarry Smith 
28862e8a6d31SBarry Smith   PetscFunctionBegin;
28879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28889566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28902e8a6d31SBarry Smith }
28912e8a6d31SBarry Smith 
2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2893d71ae5a4SJacob Faibussowitsch {
28942e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28952e8a6d31SBarry Smith 
28962e8a6d31SBarry Smith   PetscFunctionBegin;
28979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28989566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29002e8a6d31SBarry Smith }
29018a729477SBarry Smith 
2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2903d71ae5a4SJacob Faibussowitsch {
2904ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29055d2a9ed1SStefano Zampini   PetscMPIInt size;
2906a23d5eceSKris Buschelman 
2907a23d5eceSKris Buschelman   PetscFunctionBegin;
2908ad79cf63SBarry Smith   if (B->hash_active) {
2909aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2910ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2911ad79cf63SBarry Smith   }
29129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2914899cda47SBarry Smith 
2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2916eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2917cb7b82ddSBarry Smith #else
29189566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2919cb7b82ddSBarry Smith #endif
29209566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29229566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2923cb7b82ddSBarry Smith 
29249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2925c508b908SBarry Smith 
2926c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29279566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2932c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2933cb7b82ddSBarry Smith 
2934c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2935ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29369566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29389566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29399566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2940c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2941899cda47SBarry Smith 
29429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2944526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2945cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
294615001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2948a23d5eceSKris Buschelman }
2949a23d5eceSKris Buschelman 
2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2951d71ae5a4SJacob Faibussowitsch {
2952ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29534c51d546SAlexander   PetscBool   ondiagreset, offdiagreset, memoryreset;
2954846b4da1SFande Kong 
2955846b4da1SFande Kong   PetscFunctionBegin;
2956846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29574c51d546SAlexander   PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()");
29584c51d546SAlexander   if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
29594c51d546SAlexander 
29604c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset));
29614c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset));
29624c51d546SAlexander   memoryreset = (PetscBool)(ondiagreset || offdiagreset);
29634c51d546SAlexander   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B)));
29644c51d546SAlexander   if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS);
29654c51d546SAlexander 
29669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
29684c51d546SAlexander   PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled");
29694c51d546SAlexander   PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
29709566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2971846b4da1SFande Kong 
2972846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2973846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2974846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
2975b3a35320SAlex Lindsay   /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */
2976b3a35320SAlex Lindsay   PetscCall(PetscObjectStateIncrease((PetscObject)B));
29773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2978846b4da1SFande Kong }
2979846b4da1SFande Kong 
2980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2981d71ae5a4SJacob Faibussowitsch {
2982d6dfbf8fSBarry Smith   Mat         mat;
2983416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2984d6dfbf8fSBarry Smith 
29853a40ed3dSBarry Smith   PetscFunctionBegin;
2986f4259b30SLisandro Dalcin   *newmat = NULL;
29879566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29889566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29899566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29909566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2991273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2992e1b6402fSHong Zhang 
2993d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2994501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2995e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2996d6dfbf8fSBarry Smith 
299717699dbbSLois Curfman McInnes   a->size         = oldmat->size;
299817699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2999e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
3000e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
3001501880eeSStefano Zampini   a->rowindices   = NULL;
3002501880eeSStefano Zampini   a->rowvalues    = NULL;
3003bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
3004d6dfbf8fSBarry Smith 
30059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
30069566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3007420957c1SBarry Smith   if (matin->hash_active) {
3008420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3009420957c1SBarry Smith   } else {
3010420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30112ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3012aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3013eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3014b1fc9764SSatish Balay #else
30159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30169566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3017b1fc9764SSatish Balay #endif
3018501880eeSStefano Zampini     } else a->colmap = NULL;
30193f41c07dSBarry Smith     if (oldmat->garray) {
3020b1d57f15SBarry Smith       PetscInt len;
3021d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30229566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30239566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3024501880eeSStefano Zampini     } else a->garray = NULL;
3025d6dfbf8fSBarry Smith 
30260de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30270de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30280de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3029aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3030cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3031cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3032cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3033cff58d65SJunchao Zhang     }
30349566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30359566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3036420957c1SBarry Smith   }
30379566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30388a729477SBarry Smith   *newmat = mat;
30393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30408a729477SBarry Smith }
3041416022c9SBarry Smith 
3042d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3043d71ae5a4SJacob Faibussowitsch {
304452f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
304552f91c60SVaclav Hapla 
304652f91c60SVaclav Hapla   PetscFunctionBegin;
304752f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
304852f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3049c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30509566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
305352f91c60SVaclav Hapla   if (isbinary) {
30549566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
305552f91c60SVaclav Hapla   } else if (ishdf5) {
305652f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30579566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
305852f91c60SVaclav Hapla #else
305952f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
306052f91c60SVaclav Hapla #endif
306152f91c60SVaclav Hapla   } else {
306298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
306352f91c60SVaclav Hapla   }
30643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
306552f91c60SVaclav Hapla }
306652f91c60SVaclav Hapla 
3067d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3068d71ae5a4SJacob Faibussowitsch {
30693ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30703ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30713ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30728fb81238SShri Abhyankar 
30738fb81238SShri Abhyankar   PetscFunctionBegin;
30749566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30758fb81238SShri Abhyankar 
30763ea6fe3dSLisandro Dalcin   /* read in matrix header */
30779566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
307808401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30799371c9d4SSatish Balay   M  = header[1];
30809371c9d4SSatish Balay   N  = header[2];
30819371c9d4SSatish Balay   nz = header[3];
308208401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
308308401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
308408401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
308508ea439dSMark F. Adams 
30863ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30879566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30883ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30893ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30903ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30938fb81238SShri Abhyankar 
30943ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30959566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3096aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30978fb81238SShri Abhyankar 
30983ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30999566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
31009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
31019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
31029371c9d4SSatish Balay   rowidxs[0] = 0;
31039371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
31041690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3105462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
310608401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
310738b83642SBarry Smith   }
310838b83642SBarry Smith 
31093ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
31109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31119566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31129566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31133ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31149566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31159566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31188fb81238SShri Abhyankar }
31198fb81238SShri Abhyankar 
31203782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3121ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3122d71ae5a4SJacob Faibussowitsch {
31234aa3045dSJed Brown   IS          iscol_local;
3124c5e4d11fSDmitry Karpeev   PetscBool   isstride;
31259725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
31263782ecc7SHong Zhang 
31273782ecc7SHong Zhang   PetscFunctionBegin;
31283782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31303782ecc7SHong Zhang 
3131c5e4d11fSDmitry Karpeev   if (isstride) {
3132c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31339566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31349566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31359566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31369725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3137c5e4d11fSDmitry Karpeev   }
31383782ecc7SHong Zhang 
31399725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3140c5e4d11fSDmitry Karpeev   if (gisstride) {
3141c5e4d11fSDmitry Karpeev     PetscInt N;
31429566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31449566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31459566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3146c5e4d11fSDmitry Karpeev   } else {
3147c5bfad50SMark F. Adams     PetscInt cbs;
31489566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31499566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31509566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3151b79d0421SJed Brown   }
31523782ecc7SHong Zhang 
31533782ecc7SHong Zhang   *isseq = iscol_local;
31543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3155c5e4d11fSDmitry Karpeev }
31568d2139bdSHong Zhang 
3157ddfdf956SHong Zhang /*
31589c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31599c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3160ddfdf956SHong Zhang 
3161ddfdf956SHong Zhang  Input Parameters:
316227430b45SBarry Smith +   mat - matrix
316327430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31649c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
316527430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3166ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
316727430b45SBarry Smith 
316827430b45SBarry Smith  Output Parameters:
316927430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
317027430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
317127430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
317227430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3173ddfdf956SHong Zhang  */
3174835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3175d71ae5a4SJacob Faibussowitsch {
3176040216a4SHong Zhang   Vec             x, cmap;
3177040216a4SHong Zhang   const PetscInt *is_idx;
3178040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31799c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3180040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3181040216a4SHong Zhang   Mat             B    = a->B;
3182040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3183a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31848b3fa1f7SHong Zhang   MPI_Comm        comm;
31853a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31863782ecc7SHong Zhang 
31873782ecc7SHong Zhang   PetscFunctionBegin;
31889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31899566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31908b3fa1f7SHong Zhang 
3191ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31929566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31939566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31949566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31959566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31960a351717SHong Zhang 
31979c988bcaSHong Zhang   /* Get start indices */
31989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3199ddfdf956SHong Zhang   isstart -= ncols;
32009566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3201040216a4SHong Zhang 
32029566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
32039566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
32049566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
32059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3206ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
32078b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3208ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
32099c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
32108b3fa1f7SHong Zhang   }
32119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32148b3fa1f7SHong Zhang 
32159c988bcaSHong Zhang   /* Get iscol_d */
32169566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32179566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32189566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3219feb78a15SHong Zhang 
32209c988bcaSHong Zhang   /* Get isrow_d */
32219566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3222feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32249566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32259c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32269566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3227feb78a15SHong Zhang 
32289566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32299566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32309566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3231feb78a15SHong Zhang 
32329c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32339566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32349566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3235ddfdf956SHong Zhang 
32369566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
323707250d77SHong Zhang 
32389566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32399566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
324064efcef9SHong Zhang 
32419c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3242ddfdf956SHong Zhang   /* off-process column indices */
32439c988bcaSHong Zhang   count = 0;
32449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3246feb78a15SHong Zhang 
32479566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32489566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32498b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3250f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32519c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32521c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32531c645242SHong Zhang       count++;
32548b3fa1f7SHong Zhang     }
32558b3fa1f7SHong Zhang   }
32569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
325807250d77SHong Zhang 
32599566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3260b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3261b6d9b4e0SHong Zhang 
32629566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32639c988bcaSHong Zhang   *garray = cmap1;
32649c988bcaSHong Zhang 
32659566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32669566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3269040216a4SHong Zhang }
3270040216a4SHong Zhang 
3271b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3272d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3273d71ae5a4SJacob Faibussowitsch {
3274b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32751fd43edeSHong Zhang   Mat         M = NULL;
32763b00a383SHong Zhang   MPI_Comm    comm;
3277b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32783b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3279c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32803b00a383SHong Zhang 
32813b00a383SHong Zhang   PetscFunctionBegin;
32829566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32833b00a383SHong Zhang 
32843b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3285b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32869566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
328728b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32883b00a383SHong Zhang 
32899566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
329028b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32913b00a383SHong Zhang 
32929566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
329328b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32943b00a383SHong Zhang 
3295b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3296b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32979566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32989566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
329948a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
33009566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
33019566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
33023b00a383SHong Zhang 
33033b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3304c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3305b20e2604SHong Zhang     PetscInt  BsubN;
33063b00a383SHong Zhang 
3307b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
33089566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
33093b00a383SHong Zhang 
3310b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33119566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33129566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33133b00a383SHong Zhang 
3314c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3315c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3316c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3317c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3318c0c276a7Ssdargavi 
33199c988bcaSHong Zhang     /* Create submatrix M */
3320c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3321c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3322c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
33233b00a383SHong Zhang 
3324b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3325b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33267cfce09cSHong Zhang 
33279566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3328b20e2604SHong Zhang     n = asub->B->cmap->N;
3329b20e2604SHong Zhang     if (BsubN > n) {
3330c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33317cfce09cSHong Zhang       const PetscInt *idx;
33329c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33339566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33347cfce09cSHong Zhang 
33359566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33367cfce09cSHong Zhang       j = 0;
33379566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3338b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33397cfce09cSHong Zhang         if (j >= BsubN) break;
33409c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33417cfce09cSHong Zhang 
33429c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33437cfce09cSHong Zhang           idx_new[i] = idx[j++];
334498921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33457cfce09cSHong Zhang       }
33469566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33477cfce09cSHong Zhang 
33489566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33499566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33507cfce09cSHong Zhang 
3351b20e2604SHong Zhang     } else if (BsubN < n) {
335298921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3353b20e2604SHong Zhang     }
33547cfce09cSHong Zhang 
33559566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3356b20e2604SHong Zhang     *submat = M;
33573b00a383SHong Zhang 
3358e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33599566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33613b00a383SHong Zhang 
33629566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33643b00a383SHong Zhang 
33659566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33669566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33673b00a383SHong Zhang   }
33683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33693b00a383SHong Zhang }
33703b00a383SHong Zhang 
3371d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3372d71ae5a4SJacob Faibussowitsch {
33731358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33743782ecc7SHong Zhang   PetscInt  csize;
337518e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33764a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33773782ecc7SHong Zhang   MPI_Comm  comm;
33783782ecc7SHong Zhang 
33793782ecc7SHong Zhang   PetscFunctionBegin;
3380bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3381a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33828f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33839566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3384d5761cdaSHong Zhang     if (isrow_d) {
3385d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3386d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3387d5761cdaSHong Zhang     } else {
33889566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3389d5761cdaSHong Zhang       if (iscol_local) {
3390d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3391d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3392d5761cdaSHong Zhang       }
3393d5761cdaSHong Zhang     }
33948f69fa7bSHong Zhang   } else {
3395e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
339618e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33979566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33983782ecc7SHong Zhang     if (!n) {
339918e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
34003782ecc7SHong Zhang     } else {
34019566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
34029566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3403ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
34048f69fa7bSHong Zhang     }
34053782ecc7SHong Zhang 
3406e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
340718e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
34089566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
340918e627e3SHong Zhang     if (!n) {
341018e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
341118e627e3SHong Zhang     } else {
34129566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
34139566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
341418e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
341518e627e3SHong Zhang     }
341618e627e3SHong Zhang 
34179566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3418462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
341918e627e3SHong Zhang     sameRowDist = tsameDist[0];
342018e627e3SHong Zhang   }
342118e627e3SHong Zhang 
342218e627e3SHong Zhang   if (sameRowDist) {
3423b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34243b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34259566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34263ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3427b20e2604SHong Zhang     } else { /* sameRowDist */
34283b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34291358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34301358a193SHong Zhang         PetscBool sorted;
34319566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34329566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34339566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
343408401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34351358a193SHong Zhang 
34369566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34371358a193SHong Zhang         if (sorted) {
34381358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34399566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34403ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34413782ecc7SHong Zhang         }
34421358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
344348c0d076SHong Zhang         IS iscol_sub;
34449566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
344548c0d076SHong Zhang         if (iscol_sub) {
34469566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34473ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
344848c0d076SHong Zhang         }
34491358a193SHong Zhang       }
34501358a193SHong Zhang     }
34511358a193SHong Zhang   }
34523782ecc7SHong Zhang 
3453bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34543782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34559566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
345628b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34573782ecc7SHong Zhang   } else {
345848a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34591358a193SHong Zhang   }
34603782ecc7SHong Zhang 
34619566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34629566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34638f69fa7bSHong Zhang 
3464b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34659566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34669566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3467b79d0421SJed Brown   }
34683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34694aa3045dSJed Brown }
34704aa3045dSJed Brown 
3471feb78a15SHong Zhang /*@C
347211a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3473feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3474feb78a15SHong Zhang 
3475d083f849SBarry Smith   Collective
3476feb78a15SHong Zhang 
3477feb78a15SHong Zhang   Input Parameters:
3478feb78a15SHong Zhang + comm   - MPI communicator
3479c0c276a7Ssdargavi . M      - the global row size
3480c0c276a7Ssdargavi . N      - the global column size
3481feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3482c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3483a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter.
3484feb78a15SHong Zhang 
3485feb78a15SHong Zhang   Output Parameter:
34862ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
348727430b45SBarry Smith 
3488feb78a15SHong Zhang   Level: advanced
3489feb78a15SHong Zhang 
3490feb78a15SHong Zhang   Notes:
349111a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
349211a5261eSBarry Smith 
3493c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3494feb78a15SHong Zhang 
3495a3156c1cSJunchao Zhang   If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update
3496a3156c1cSJunchao Zhang   `B`'s copy on device.  We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or
3497a3156c1cSJunchao Zhang   `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray`
3498a3156c1cSJunchao Zhang   yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`.
3499a3156c1cSJunchao Zhang 
3500*b1dff882SJunchao Zhang   The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others.
3501*b1dff882SJunchao Zhang 
35021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3503feb78a15SHong Zhang @*/
3504c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3505d71ae5a4SJacob Faibussowitsch {
3506c0c276a7Ssdargavi   PetscInt m, n;
35074ab4d6f4SRichard Tran Mills   MatType  mpi_mat_type;
3508feb78a15SHong Zhang 
3509feb78a15SHong Zhang   PetscFunctionBegin;
35109566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
351208401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
351358b7e2c1SStefano Zampini   PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3514feb78a15SHong Zhang 
3515c0c276a7Ssdargavi   PetscCall(MatSetSizes(*mat, m, n, M, N));
35164ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35174ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35184ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35194ab4d6f4SRichard Tran Mills 
352058b7e2c1SStefano Zampini   PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3521feb78a15SHong Zhang 
35229566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35239566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3524a3156c1cSJunchao Zhang   if (!garray) {
3525a3156c1cSJunchao Zhang     const PetscScalar *ba;
3526a3156c1cSJunchao Zhang 
3527a3156c1cSJunchao Zhang     B->nonzerostate++;
3528a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */
3529a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3530a3156c1cSJunchao Zhang   }
3531c0c276a7Ssdargavi   PetscCall(MatSetMPIAIJWithSplitSeqAIJ(*mat, A, B, garray));
3532c0c276a7Ssdargavi   PetscFunctionReturn(PETSC_SUCCESS);
3533feb78a15SHong Zhang }
3534feb78a15SHong Zhang 
3535c0c276a7Ssdargavi /*
3536c0c276a7Ssdargavi   MatSetMPIAIJWithSplitSeqAIJ - Set the diag and offdiag matrices of a `MATMPIAIJ` matrix.
3537c0c276a7Ssdargavi    It is similar to `MatCreateMPIAIJWithSplitArrays()`. This routine allows passing in
3538c0c276a7Ssdargavi    B with local indices and the correct size, along with the accompanying
3539c0c276a7Ssdargavi    garray, hence skipping compactification
3540d5761cdaSHong Zhang 
3541c0c276a7Ssdargavi   Collective
3542d5761cdaSHong Zhang 
3543c0c276a7Ssdargavi   Input Parameters:
3544c0c276a7Ssdargavi +  mat    - the MATMPIAIJ matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set
3545c0c276a7Ssdargavi .  A      - the diag matrix using local col ids
3546c0c276a7Ssdargavi .  B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3547c0c276a7Ssdargavi -  garray - either `NULL` or the global index of `B` columns
3548d5761cdaSHong Zhang 
3549c0c276a7Ssdargavi   Output Parameter:
3550c0c276a7Ssdargavi .  mat   - the updated `MATMPIAIJ` matrix
3551feb78a15SHong Zhang 
3552c0c276a7Ssdargavi   Level: advanced
3553c0c276a7Ssdargavi 
3554c0c276a7Ssdargavi   Notes:
3555c0c276a7Ssdargavi   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
3556c0c276a7Ssdargavi 
3557c0c276a7Ssdargavi   `A` and `B` become part of output mat. The user cannot use `A` and `B` anymore.
3558c0c276a7Ssdargavi 
3559c0c276a7Ssdargavi .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3560c0c276a7Ssdargavi */
3561c0c276a7Ssdargavi PETSC_INTERN PetscErrorCode MatSetMPIAIJWithSplitSeqAIJ(Mat mat, Mat A, Mat B, PetscInt *garray)
3562c0c276a7Ssdargavi {
3563c0c276a7Ssdargavi   PetscFunctionBegin;
3564c0c276a7Ssdargavi   Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data;
3565c0c276a7Ssdargavi   PetscInt    m, n, M, N, Am, An, Bm, Bn;
3566c0c276a7Ssdargavi 
3567c0c276a7Ssdargavi   PetscCall(MatGetSize(mat, &M, &N));
3568c0c276a7Ssdargavi   PetscCall(MatGetLocalSize(mat, &m, &n));
3569c0c276a7Ssdargavi   PetscCall(MatGetLocalSize(A, &Am, &An));
3570c0c276a7Ssdargavi   PetscCall(MatGetLocalSize(B, &Bm, &Bn));
3571c0c276a7Ssdargavi 
3572c0c276a7Ssdargavi   PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match");
3573c0c276a7Ssdargavi   PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match");
3574c0c276a7Ssdargavi   PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty");
3575c0c276a7Ssdargavi   mpiaij->A      = A;
3576c0c276a7Ssdargavi   mpiaij->B      = B;
3577c0c276a7Ssdargavi   mpiaij->garray = garray;
3578c0c276a7Ssdargavi 
3579c0c276a7Ssdargavi   mat->preallocated     = PETSC_TRUE;
3580c0c276a7Ssdargavi   mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3581c0c276a7Ssdargavi 
3582c0c276a7Ssdargavi   PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3583c0c276a7Ssdargavi   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
3584c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3585c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3586c0c276a7Ssdargavi    */
3587c0c276a7Ssdargavi   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
3588c0c276a7Ssdargavi   PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3589c0c276a7Ssdargavi   PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3591feb78a15SHong Zhang }
3592feb78a15SHong Zhang 
3593ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35944aa3045dSJed Brown 
3595d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3596d71ae5a4SJacob Faibussowitsch {
359798b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
359885f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
359998b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
36001fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
360198b658c4SHong Zhang   MatScalar      *aa;
360200e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3603a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
360498b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
360598b658c4SHong Zhang   IS              iscol_sub, iscmap;
360698b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
360718e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3608a31a438cSHong Zhang   MPI_Comm        comm;
36097e2c5f70SBarry Smith 
3610a0ff6018SBarry Smith   PetscFunctionBegin;
36119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3612d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
36139566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
361428b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
36159566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3616d5761cdaSHong Zhang 
36179566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
361828b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3619d5761cdaSHong Zhang 
36209566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
362128b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3622d5761cdaSHong Zhang 
36239566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3624d5761cdaSHong Zhang 
3625d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
36263b00a383SHong Zhang     PetscBool flg;
36273b00a383SHong Zhang 
36289566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
36299566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3630bcae8d28SHong Zhang 
36313b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3632366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
36339566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3634366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3635462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3636366a327dSHong Zhang     if (allcolumns) {
3637366a327dSHong Zhang       iscol_sub = iscol_local;
36389566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
36399566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3640366a327dSHong Zhang 
36413b00a383SHong Zhang     } else {
36421358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3643244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
36449566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
36459566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
36469566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36478d2139bdSHong Zhang       count = 0;
3648a31a438cSHong Zhang       k     = 0;
3649a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3650a31a438cSHong Zhang         j = is_idx[i];
3651a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3652a31a438cSHong Zhang           /* diagonal part of mat */
36538d2139bdSHong Zhang           idx[count]     = j;
3654366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36554a3daf6eSHong Zhang         } else if (Bn) {
3656a31a438cSHong Zhang           /* off-diagonal part of mat */
3657a31a438cSHong Zhang           if (j == garray[k]) {
36588d2139bdSHong Zhang             idx[count]     = j;
3659a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3660a31a438cSHong Zhang           } else if (j > garray[k]) {
3661a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3662a31a438cSHong Zhang             if (j == garray[k]) {
3663a31a438cSHong Zhang               idx[count]     = j;
3664a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36658d2139bdSHong Zhang             }
36668d2139bdSHong Zhang           }
36678d2139bdSHong Zhang         }
36688d2139bdSHong Zhang       }
36699566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36708d2139bdSHong Zhang 
36719566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36729566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36739566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3674b6d9b4e0SHong Zhang 
36759566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3676a31a438cSHong Zhang     }
36778b3fa1f7SHong Zhang 
36783b00a383SHong Zhang     /* (3) Create sequential Msub */
36799566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3680d5761cdaSHong Zhang   }
36818d2139bdSHong Zhang 
36829566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
368357508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
368498b658c4SHong Zhang   ii  = aij->i;
36859566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3686a0ff6018SBarry Smith 
3687a0ff6018SBarry Smith   /*
3688a0ff6018SBarry Smith       m - number of local rows
3689a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3690a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3691a0ff6018SBarry Smith   */
36929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
369398b658c4SHong Zhang 
36943b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36953b00a383SHong Zhang     /* (4) Create parallel newmat */
369698b658c4SHong Zhang     PetscMPIInt rank, size;
3697bcae8d28SHong Zhang     PetscInt    csize;
369898b658c4SHong Zhang 
36999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
37009566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
370100e6dbe6SBarry Smith 
3702a0ff6018SBarry Smith     /*
370300e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
370400e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3705a0ff6018SBarry Smith     */
370600e6dbe6SBarry Smith 
370700e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
37089566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
37096a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
37109566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3711a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3712e2c4fddaSBarry Smith         nlocal = m;
37136a6a5d1dSBarry Smith       } else {
3714a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3715ab50ec6bSBarry Smith       }
3716ab50ec6bSBarry Smith     } else {
37176a6a5d1dSBarry Smith       nlocal = csize;
37186a6a5d1dSBarry Smith     }
37199566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
372000e6dbe6SBarry Smith     rstart = rend - nlocal;
3721aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
372200e6dbe6SBarry Smith 
372300e6dbe6SBarry Smith     /* next, compute all the lengths */
372498b658c4SHong Zhang     jj = aij->j;
37259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
372600e6dbe6SBarry Smith     olens = dlens + m;
372700e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
372800e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
372900e6dbe6SBarry Smith       olen = 0;
373000e6dbe6SBarry Smith       dlen = 0;
373100e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
373215b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
373300e6dbe6SBarry Smith         else dlen++;
373400e6dbe6SBarry Smith         jj++;
373500e6dbe6SBarry Smith       }
373600e6dbe6SBarry Smith       olens[i] = olen;
373700e6dbe6SBarry Smith       dlens[i] = dlen;
373800e6dbe6SBarry Smith     }
3739b6d9b4e0SHong Zhang 
37409566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
37419566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
374298b658c4SHong Zhang 
37439566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
37449566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
37459566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
37469566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37479566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37489566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3749d5761cdaSHong Zhang 
3750d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3751a0ff6018SBarry Smith     M = *newmat;
37529566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
375308401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37549566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3755c48de900SBarry Smith     /*
3756c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3757c48de900SBarry Smith        rather than the slower MatSetValues().
3758c48de900SBarry Smith     */
3759c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3760c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3761a0ff6018SBarry Smith   }
3762548ecf4dSHong Zhang 
37633b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37659566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
376698b658c4SHong Zhang 
376798b658c4SHong Zhang   jj = aij->j;
37689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3769a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3770a0ff6018SBarry Smith     row = rstart + i;
377100e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
377215b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37739566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37749371c9d4SSatish Balay     jj += nz;
37759371c9d4SSatish Balay     aa += nz;
3776a0ff6018SBarry Smith   }
37779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37789566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3779a0ff6018SBarry Smith 
37809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3782fee21e36SBarry Smith 
37839566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
378498b658c4SHong Zhang 
378598b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3786fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37873b00a383SHong Zhang     *newmat = M;
3788f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37899566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
379098b658c4SHong Zhang 
3791f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37929566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
379398b658c4SHong Zhang 
3794f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37959566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3796bcae8d28SHong Zhang 
3797bcae8d28SHong Zhang     if (iscol_local) {
3798f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37999566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3800bcae8d28SHong Zhang     }
380198b658c4SHong Zhang   }
38023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3803a0ff6018SBarry Smith }
3804273d9f13SBarry Smith 
3805df40acb1SHong Zhang /*
3806df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3807df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3808df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3809df40acb1SHong Zhang 
381011a5261eSBarry Smith   This requires a sequential iscol with all indices.
3811df40acb1SHong Zhang */
3812d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3813d71ae5a4SJacob Faibussowitsch {
3814df40acb1SHong Zhang   PetscMPIInt rank, size;
3815df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3816df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3817df40acb1SHong Zhang   Mat         M, Mreuse;
381898b658c4SHong Zhang   MatScalar  *aa, *vwork;
3819df40acb1SHong Zhang   MPI_Comm    comm;
3820df40acb1SHong Zhang   Mat_SeqAIJ *aij;
38210b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3822df40acb1SHong Zhang 
3823df40acb1SHong Zhang   PetscFunctionBegin;
38249566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
38259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
38269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3827df40acb1SHong Zhang 
38280b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
38299566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
38309566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
38310b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3832462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
38330b27a90eSHong Zhang 
3834df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
38359566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
383628b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
38379566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3838df40acb1SHong Zhang   } else {
38399566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3840df40acb1SHong Zhang   }
3841df40acb1SHong Zhang 
3842df40acb1SHong Zhang   /*
3843df40acb1SHong Zhang       m - number of local rows
3844df40acb1SHong Zhang       n - number of columns (same on all processors)
3845df40acb1SHong Zhang       rstart - first row in new global matrix generated
3846df40acb1SHong Zhang   */
38479566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38489566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3849df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
385057508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3851df40acb1SHong Zhang     ii  = aij->i;
3852df40acb1SHong Zhang     jj  = aij->j;
3853df40acb1SHong Zhang 
3854df40acb1SHong Zhang     /*
3855df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3856df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3857df40acb1SHong Zhang     */
3858df40acb1SHong Zhang 
3859df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3860df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38619566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3862df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3863df40acb1SHong Zhang         nlocal = m;
3864df40acb1SHong Zhang       } else {
3865df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3866df40acb1SHong Zhang       }
3867df40acb1SHong Zhang     } else {
3868df40acb1SHong Zhang       nlocal = csize;
3869df40acb1SHong Zhang     }
38709566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3871df40acb1SHong Zhang     rstart = rend - nlocal;
3872aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3873df40acb1SHong Zhang 
3874df40acb1SHong Zhang     /* next, compute all the lengths */
38759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3876df40acb1SHong Zhang     olens = dlens + m;
3877df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3878df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3879df40acb1SHong Zhang       olen = 0;
3880df40acb1SHong Zhang       dlen = 0;
3881df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3882df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3883df40acb1SHong Zhang         else dlen++;
3884df40acb1SHong Zhang         jj++;
3885df40acb1SHong Zhang       }
3886df40acb1SHong Zhang       olens[i] = olen;
3887df40acb1SHong Zhang       dlens[i] = dlen;
3888df40acb1SHong Zhang     }
38899566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38909566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38919566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38929566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38939566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38949566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3895df40acb1SHong Zhang   } else {
3896df40acb1SHong Zhang     PetscInt ml, nl;
3897df40acb1SHong Zhang 
3898df40acb1SHong Zhang     M = *newmat;
38999566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
390008401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
39019566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3902df40acb1SHong Zhang     /*
3903df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3904df40acb1SHong Zhang        rather than the slower MatSetValues().
3905df40acb1SHong Zhang     */
3906df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3907df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3908df40acb1SHong Zhang   }
39099566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
391057508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3911df40acb1SHong Zhang   ii  = aij->i;
3912df40acb1SHong Zhang   jj  = aij->j;
39132e5835c6SStefano Zampini 
39142e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
39159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3916df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3917df40acb1SHong Zhang     row   = rstart + i;
3918df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
39199371c9d4SSatish Balay     cwork = jj;
39208e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
39219371c9d4SSatish Balay     vwork = aa;
39228e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
39239566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3924df40acb1SHong Zhang   }
39259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3926df40acb1SHong Zhang 
39279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
39289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3929df40acb1SHong Zhang   *newmat = M;
3930df40acb1SHong Zhang 
3931df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3932df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
39339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
39349566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3935df40acb1SHong Zhang   }
39363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3937df40acb1SHong Zhang }
3938df40acb1SHong Zhang 
3939ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3940d71ae5a4SJacob Faibussowitsch {
39416a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
39429f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3943ccd8e176SBarry Smith   const PetscInt *JJ;
3944eeb24464SBarry Smith   PetscBool       nooffprocentries;
39456a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3946ccd8e176SBarry Smith 
3947ccd8e176SBarry Smith   PetscFunctionBegin;
39489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3950d0f46423SBarry Smith   m       = B->rmap->n;
3951d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3952d0f46423SBarry Smith   cend    = B->cmap->rend;
3953d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39549f0612e4SBarry Smith   irstart = Ii[0];
3955899cda47SBarry Smith 
39569566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3957ccd8e176SBarry Smith 
395876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39598f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3960ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39619f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
396208401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
396308401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
396408401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3965ecc77c7aSBarry Smith     }
396676bd3646SJed Brown   }
3967ecc77c7aSBarry Smith 
39688f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3969b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39709f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3971ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3972ccd8e176SBarry Smith     d       = 0;
39730daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39740daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3975ccd8e176SBarry Smith     }
3976ccd8e176SBarry Smith     d_nnz[i] = d;
3977ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3978ccd8e176SBarry Smith   }
39799566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3981ccd8e176SBarry Smith 
39828f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3983ccd8e176SBarry Smith     ii = i + rstart;
39849f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3985ccd8e176SBarry Smith   }
3986eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3987eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3990eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3991ccd8e176SBarry Smith 
39926a3d2595SBarry Smith   /* count number of entries below block diagonal */
39936a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39946a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39956a3d2595SBarry Smith   Aij->ld = ld;
39966a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39976a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39986a3d2595SBarry Smith     j   = 0;
3999ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
40006a3d2595SBarry Smith     ld[i] = j;
4001720a2405SPierre Jolivet     if (J) J += nnz;
40026a3d2595SBarry Smith   }
40036a3d2595SBarry Smith 
40049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
40053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4006ccd8e176SBarry Smith }
4007ccd8e176SBarry Smith 
40081eea217eSSatish Balay /*@
400911a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
4010ccd8e176SBarry Smith   (the default parallel PETSc format).
4011ccd8e176SBarry Smith 
4012d083f849SBarry Smith   Collective
4013ccd8e176SBarry Smith 
4014ccd8e176SBarry Smith   Input Parameters:
4015a1661176SMatthew Knepley + B - the matrix
4016d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
4017d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
4018ccd8e176SBarry Smith - v - optional values in the matrix
4019ccd8e176SBarry Smith 
4020ccd8e176SBarry Smith   Level: developer
4021ccd8e176SBarry Smith 
402212251496SSatish Balay   Notes:
40232ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
40242ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
402511a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
402612251496SSatish Balay 
40272ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
402812251496SSatish Balay 
4029a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
4030a4bd8bc0SBarry Smith 
4031a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
4032a4bd8bc0SBarry Smith 
4033a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
4034a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4035a4bd8bc0SBarry Smith 
403612251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
403712251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4038c5e4d11fSDmitry Karpeev   as shown
403927430b45SBarry Smith .vb
404027430b45SBarry Smith         1 0 0
404127430b45SBarry Smith         2 0 3     P0
404227430b45SBarry Smith        -------
404327430b45SBarry Smith         4 5 6     P1
404427430b45SBarry Smith 
404527430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
404627430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
404727430b45SBarry Smith         j =  {0,0,2}  [size = 3]
404827430b45SBarry Smith         v =  {1,2,3}  [size = 3]
404927430b45SBarry Smith 
405027430b45SBarry Smith      Process1 [P1] rows_owned=[2]
405127430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
405227430b45SBarry Smith         j =  {0,1,2}  [size = 3]
405327430b45SBarry Smith         v =  {4,5,6}  [size = 3]
405427430b45SBarry Smith .ve
405512251496SSatish Balay 
4056fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4057a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4058ccd8e176SBarry Smith @*/
4059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4060d71ae5a4SJacob Faibussowitsch {
4061ccd8e176SBarry Smith   PetscFunctionBegin;
4062cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4064ccd8e176SBarry Smith }
4065ccd8e176SBarry Smith 
40665d83a8b1SBarry Smith /*@
406711a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4068273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4069273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
407020f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4071273d9f13SBarry Smith 
4072d083f849SBarry Smith   Collective
4073273d9f13SBarry Smith 
4074273d9f13SBarry Smith   Input Parameters:
40751c4f3114SJed Brown + B     - the matrix
4076273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4077273d9f13SBarry Smith            (same value is used for all local rows)
4078273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4079273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40802ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4081273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40823287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40833287b5eaSJed Brown            the diagonal entry even if it is zero.
4084273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4085273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4086273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4087273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40882ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4089273d9f13SBarry Smith            structure. The size of this array is equal to the number
4090273d9f13SBarry Smith            of local rows, i.e 'm'.
4091273d9f13SBarry Smith 
40922920cce0SJacob Faibussowitsch   Example Usage:
409327430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
409427430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
409527430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
409627430b45SBarry Smith   as follows
409727430b45SBarry Smith 
409827430b45SBarry Smith .vb
409927430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
410027430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
410127430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
410227430b45SBarry Smith     -------------------------------------
410327430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
410427430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
410527430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
410627430b45SBarry Smith     -------------------------------------
410727430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
410827430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
410927430b45SBarry Smith .ve
411027430b45SBarry Smith 
411127430b45SBarry Smith   This can be represented as a collection of submatrices as
411227430b45SBarry Smith .vb
411327430b45SBarry Smith       A B C
411427430b45SBarry Smith       D E F
411527430b45SBarry Smith       G H I
411627430b45SBarry Smith .ve
411727430b45SBarry Smith 
411827430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
411927430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
412027430b45SBarry Smith 
412127430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
412227430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
412327430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
412427430b45SBarry Smith 
412527430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
412627430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
412727430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
412827430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
412927430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
41305163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
413127430b45SBarry Smith 
413220f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
41335163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
41345163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
41355163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
41365163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
413720f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
413827430b45SBarry Smith .vb
413927430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
414027430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
414127430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
414227430b45SBarry Smith .ve
414320f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
414427430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
414527430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
414627430b45SBarry Smith   34 values.
414727430b45SBarry Smith 
414820f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
414927430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
415020f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
415127430b45SBarry Smith .vb
415227430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
415327430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
415427430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
415527430b45SBarry Smith .ve
415627430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
415727430b45SBarry Smith   hence pre-allocation is perfect.
415827430b45SBarry Smith 
415927430b45SBarry Smith   Level: intermediate
416027430b45SBarry Smith 
416127430b45SBarry Smith   Notes:
416249a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
416349a6f317SBarry Smith 
416427430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41650598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4166651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4167273d9f13SBarry Smith 
4168273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4169273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4170273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4171273d9f13SBarry Smith 
4172273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4173a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4174a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4175a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4176a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4177a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4178a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4179a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4180a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4181273d9f13SBarry Smith 
41822ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4183273d9f13SBarry Smith 
418427430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4185aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
418627430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4187aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4188aa95bbe8SBarry Smith 
41891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4190a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4191273d9f13SBarry Smith @*/
4192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4193d71ae5a4SJacob Faibussowitsch {
4194273d9f13SBarry Smith   PetscFunctionBegin;
41956ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41966ba663aaSJed Brown   PetscValidType(B, 1);
4197cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4199273d9f13SBarry Smith }
4200273d9f13SBarry Smith 
420158d36128SBarry Smith /*@
420211a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
42038f8f2f0dSBarry Smith   CSR format for the local rows.
42042fb0ec9aSBarry Smith 
4205d083f849SBarry Smith   Collective
42062fb0ec9aSBarry Smith 
42072fb0ec9aSBarry Smith   Input Parameters:
42082fb0ec9aSBarry Smith + comm - MPI communicator
420911a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
42102fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4211d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4212d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4213d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4214d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
42155693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
42165693b835SJunchao Zhang . j    - global column indices
4217f1f2ae84SBarry Smith - a    - optional matrix values
42182fb0ec9aSBarry Smith 
42192fb0ec9aSBarry Smith   Output Parameter:
42202fb0ec9aSBarry Smith . mat - the matrix
422103bfb495SBarry Smith 
42222fb0ec9aSBarry Smith   Level: intermediate
42232fb0ec9aSBarry Smith 
42242fb0ec9aSBarry Smith   Notes:
42252ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4226d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4227d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
42282fb0ec9aSBarry Smith 
42292ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
423012251496SSatish Balay 
42315693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4232a4bd8bc0SBarry Smith 
42335693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4234a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4235a4bd8bc0SBarry Smith 
423612251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4237d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4238c5e4d11fSDmitry Karpeev   as shown
42392ef1f0ffSBarry Smith .vb
42402ef1f0ffSBarry Smith         1 0 0
42412ef1f0ffSBarry Smith         2 0 3     P0
42422ef1f0ffSBarry Smith        -------
42432ef1f0ffSBarry Smith         4 5 6     P1
42448f8f2f0dSBarry Smith 
42452ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42462ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42472ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42482ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42492fb0ec9aSBarry Smith 
42502ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42512ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42522ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42532ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42542ef1f0ffSBarry Smith .ve
42552ef1f0ffSBarry Smith 
4256d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42575693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42582fb0ec9aSBarry Smith @*/
4259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4260d71ae5a4SJacob Faibussowitsch {
42612fb0ec9aSBarry Smith   PetscFunctionBegin;
426208401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426308401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42649566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42659566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42669566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42679566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42689566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42702fb0ec9aSBarry Smith }
42712fb0ec9aSBarry Smith 
42728f8f2f0dSBarry Smith /*@
427311a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42742ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42752ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42766a3d2595SBarry Smith 
42776a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42788f8f2f0dSBarry Smith 
42798f8f2f0dSBarry Smith   Collective
42808f8f2f0dSBarry Smith 
42818f8f2f0dSBarry Smith   Input Parameters:
42828f8f2f0dSBarry Smith + mat - the matrix
428311a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42848f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
428511a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42868f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
428711a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
428811a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42898f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42908f8f2f0dSBarry Smith . J   - column indices
42918f8f2f0dSBarry Smith - v   - matrix values
42928f8f2f0dSBarry Smith 
42932ef1f0ffSBarry Smith   Level: deprecated
42948f8f2f0dSBarry Smith 
42951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4296a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42978f8f2f0dSBarry Smith @*/
4298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4299d71ae5a4SJacob Faibussowitsch {
43006a3d2595SBarry Smith   PetscInt        nnz, i;
43018f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
43028f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4303fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4304fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
43058f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
43066a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
43076a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
43088f8f2f0dSBarry Smith 
43098f8f2f0dSBarry Smith   PetscFunctionBegin;
4310aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
431108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
431208401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
431308401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
43148f8f2f0dSBarry Smith 
43159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43178f8f2f0dSBarry Smith 
43188f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
43194c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
43204c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
43214c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
43224c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
43234c17f1ccSBarry Smith       }
43244c17f1ccSBarry Smith     }
43258f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
43268f8f2f0dSBarry Smith     Iii = Ii[i];
43278f8f2f0dSBarry Smith     ldi = ld[i];
43288f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
43299566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
43309566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43319566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43328f8f2f0dSBarry Smith     ad += md;
43338f8f2f0dSBarry Smith     ao += nnz - md;
43348f8f2f0dSBarry Smith   }
43358f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
43368f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43379566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43399566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43409566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43419566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43448f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
43453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43468f8f2f0dSBarry Smith }
43478f8f2f0dSBarry Smith 
43486a3d2595SBarry Smith /*@
434911a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43506a3d2595SBarry Smith 
43516a3d2595SBarry Smith   Collective
43526a3d2595SBarry Smith 
43536a3d2595SBarry Smith   Input Parameters:
43546a3d2595SBarry Smith + mat - the matrix
43556a3d2595SBarry Smith - v   - matrix values, stored by row
43566a3d2595SBarry Smith 
43576a3d2595SBarry Smith   Level: intermediate
43586a3d2595SBarry Smith 
4359a4bd8bc0SBarry Smith   Notes:
43606a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43616a3d2595SBarry Smith 
4362a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4363a4bd8bc0SBarry Smith 
43641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4365a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43666a3d2595SBarry Smith @*/
4367d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4368d71ae5a4SJacob Faibussowitsch {
43696a3d2595SBarry Smith   PetscInt        nnz, i, m;
43706a3d2595SBarry Smith   PetscBool       nooffprocentries;
43716a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43726a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43736a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43746a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43756a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43766a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43776a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43786a3d2595SBarry Smith 
43796a3d2595SBarry Smith   PetscFunctionBegin;
43806a3d2595SBarry Smith   m = mat->rmap->n;
43816a3d2595SBarry Smith 
43826a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43836a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43846a3d2595SBarry Smith   Iii = 0;
43856a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43866a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43876a3d2595SBarry Smith     ldi = ld[i];
43886a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43896a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43906a3d2595SBarry Smith     ad += md;
4391810441c8SPierre Jolivet     if (ao) {
4392810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4393810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43946a3d2595SBarry Smith       ao += nnz - md;
4395810441c8SPierre Jolivet     }
43966a3d2595SBarry Smith     Iii += nnz;
43976a3d2595SBarry Smith   }
43986a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43996a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
44006a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
44016a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
44026a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
44036a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
44046a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
44056a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
44066a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
44076a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
44083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44096a3d2595SBarry Smith }
44106a3d2595SBarry Smith 
44115d83a8b1SBarry Smith /*@
441211a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4413273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4414273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
44152ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4416273d9f13SBarry Smith 
4417d083f849SBarry Smith   Collective
4418273d9f13SBarry Smith 
4419273d9f13SBarry Smith   Input Parameters:
4420273d9f13SBarry Smith + comm  - MPI communicator
442111a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4422273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4423273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4424273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
442545f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4426273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
442711a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
442811a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4429273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4430273d9f13SBarry Smith           (same value is used for all local rows)
4431273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4432273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
44332ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4434273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4435273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4436273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4437273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4438273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
44392ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4440273d9f13SBarry Smith           structure. The size of this array is equal to the number
4441273d9f13SBarry Smith           of local rows, i.e 'm'.
4442273d9f13SBarry Smith 
4443273d9f13SBarry Smith   Output Parameter:
4444273d9f13SBarry Smith . A - the matrix
4445273d9f13SBarry Smith 
444627430b45SBarry Smith   Options Database Keys:
444727430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
444827430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
444927430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4450727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4451727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
445227430b45SBarry Smith 
44532ef1f0ffSBarry Smith   Level: intermediate
44542ef1f0ffSBarry Smith 
445527430b45SBarry Smith   Notes:
445677433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4457f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
445811a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4459175b88e8SBarry Smith 
446049a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
446149a6f317SBarry Smith 
44622ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44632ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4464273d9f13SBarry Smith   storage requirements for this matrix.
4465273d9f13SBarry Smith 
446611a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4467273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4468273d9f13SBarry Smith   that argument.
4469273d9f13SBarry Smith 
4470727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4471727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4472727bdf9bSBarry Smith 
4473273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4474273d9f13SBarry Smith   (possibly both).
4475273d9f13SBarry Smith 
447633a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4477727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4478727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4479727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
448033a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4481273d9f13SBarry Smith 
448233a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
448333a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4484df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
448533a7c187SSatish Balay 
448633a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
448733a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
448833a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
448933a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
449033a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
449133a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44920b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44930b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
449433a7c187SSatish Balay 
449533a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
449633a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
449733a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
449833a7c187SSatish Balay   local matrix (a rectangular submatrix).
4499273d9f13SBarry Smith 
45002ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4501273d9f13SBarry Smith 
450297d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
45032ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4504da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4505da57b5cdSKarl Rupp .vb
45062ef1f0ffSBarry Smith   MatCreate(..., &A);
45072ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
45082ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
45092ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4510da57b5cdSKarl Rupp .ve
451197d05335SKris Buschelman 
4512273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4513273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4514273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4515273d9f13SBarry Smith 
45162920cce0SJacob Faibussowitsch   Example Usage:
4517273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4518273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4519273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4520efc377ccSKarl Rupp   as follows
4521273d9f13SBarry Smith 
4522273d9f13SBarry Smith .vb
4523273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4524273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4525273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4526273d9f13SBarry Smith     -------------------------------------
4527273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4528273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4529273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4530273d9f13SBarry Smith     -------------------------------------
4531273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4532273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4533273d9f13SBarry Smith .ve
4534273d9f13SBarry Smith 
4535da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4536273d9f13SBarry Smith 
4537273d9f13SBarry Smith .vb
4538273d9f13SBarry Smith       A B C
4539273d9f13SBarry Smith       D E F
4540273d9f13SBarry Smith       G H I
4541273d9f13SBarry Smith .ve
4542273d9f13SBarry Smith 
4543273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4544273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4545273d9f13SBarry Smith 
4546273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4547273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4548273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4549273d9f13SBarry Smith 
4550273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4551273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4552273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4553273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
455427430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45555163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4556273d9f13SBarry Smith 
45572ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45585163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45595163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45605163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45615163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45622ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4563273d9f13SBarry Smith .vb
456427430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
456527430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
456627430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4567273d9f13SBarry Smith .ve
45682ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4569273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4570273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4571273d9f13SBarry Smith   34 values.
4572273d9f13SBarry Smith 
45732ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4574a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4575da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4576273d9f13SBarry Smith .vb
457727430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
457827430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
457927430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4580273d9f13SBarry Smith .ve
4581273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4582273d9f13SBarry Smith   hence pre-allocation is perfect.
4583273d9f13SBarry Smith 
45841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4585727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4586727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4587273d9f13SBarry Smith @*/
4588d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4589d71ae5a4SJacob Faibussowitsch {
4590b1d57f15SBarry Smith   PetscMPIInt size;
4591273d9f13SBarry Smith 
4592273d9f13SBarry Smith   PetscFunctionBegin;
45939566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45949566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4596273d9f13SBarry Smith   if (size > 1) {
45979566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45989566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4599273d9f13SBarry Smith   } else {
46009566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
46019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4602273d9f13SBarry Smith   }
46033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4604273d9f13SBarry Smith }
4605195d93cdSBarry Smith 
4606127ca0efSMatthew Knepley /*@C
46070ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4608127ca0efSMatthew Knepley 
46092ef1f0ffSBarry Smith   Not Collective
4610127ca0efSMatthew Knepley 
4611127ca0efSMatthew Knepley   Input Parameter:
461211a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4613127ca0efSMatthew Knepley 
4614127ca0efSMatthew Knepley   Output Parameters:
461511a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
461611a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46172ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4618127ca0efSMatthew Knepley 
46190ab4885dSBarry Smith   Level: intermediate
46200ab4885dSBarry Smith 
462111a5261eSBarry Smith   Note:
46222ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46232ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46242ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4625127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4626127ca0efSMatthew Knepley 
4627ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4628127ca0efSMatthew Knepley @*/
4629d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4630d71ae5a4SJacob Faibussowitsch {
4631195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
463204cf37c7SBarry Smith   PetscBool   flg;
4633b1d57f15SBarry Smith 
4634195d93cdSBarry Smith   PetscFunctionBegin;
46359566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463628b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463721e72a00SBarry Smith   if (Ad) *Ad = a->A;
463821e72a00SBarry Smith   if (Ao) *Ao = a->B;
463921e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4641195d93cdSBarry Smith }
4642a2243be0SBarry Smith 
4643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4644d71ae5a4SJacob Faibussowitsch {
4645110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46469b8102ccSHong Zhang   PetscInt    *indx;
4647110bb6e1SHong Zhang   PetscScalar *values;
4648421ddf4dSJunchao Zhang   MatType      rootType;
46499b8102ccSHong Zhang 
46509b8102ccSHong Zhang   PetscFunctionBegin;
46519566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4652110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4653110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4654110bb6e1SHong Zhang 
465548a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4656a22543b6SHong Zhang     /* Check sum(n) = N */
4657462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465808401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4659a22543b6SHong Zhang 
46609566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46619b8102ccSHong Zhang     rstart -= m;
46629b8102ccSHong Zhang 
4663d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46649b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46659566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46669566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46679566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46689b8102ccSHong Zhang     }
46699b8102ccSHong Zhang 
46709566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46719566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46729566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46739566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46749566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46759566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46779566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4678d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46809b8102ccSHong Zhang   }
46819b8102ccSHong Zhang 
4682110bb6e1SHong Zhang   /* numeric phase */
46839566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46849b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46859566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46869b8102ccSHong Zhang     Ii = i + rstart;
46879566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46889566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46899b8102ccSHong Zhang   }
46909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4693c5d6d63eSBarry Smith }
4694c5d6d63eSBarry Smith 
469549abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4696d71ae5a4SJacob Faibussowitsch {
469749abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
469851a7d1a8SHong Zhang 
469951a7d1a8SHong Zhang   PetscFunctionBegin;
47003ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47099566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47109566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47119566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47129566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47149566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471651a7d1a8SHong Zhang }
471751a7d1a8SHong Zhang 
4718c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4719c6db04a5SJed Brown #include <petscbt.h>
47204ebed01fSBarry Smith 
4721d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4722d71ae5a4SJacob Faibussowitsch {
4723ce94432eSBarry Smith   MPI_Comm             comm;
472455d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4725b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
47266497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
47276497c311SBarry Smith   PetscMPIInt          proc, k;
4728b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
47296497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4730b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
473155d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
473255d1abb9SHong Zhang   MPI_Status          *status;
4733fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4734dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473555d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4736776b82aeSLisandro Dalcin   PetscContainer       container;
473755d1abb9SHong Zhang 
473855d1abb9SHong Zhang   PetscFunctionBegin;
47399566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47413c2c1871SHong Zhang 
47429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
474455d1abb9SHong Zhang 
47459566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474628b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47479566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4749fff043a9SJunchao Zhang   aa = a_a;
4750bf0cc555SLisandro Dalcin 
475155d1abb9SHong Zhang   bi     = merge->bi;
475255d1abb9SHong Zhang   bj     = merge->bj;
475355d1abb9SHong Zhang   buf_ri = merge->buf_ri;
475455d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475555d1abb9SHong Zhang 
47569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47577a2fc3feSBarry Smith   owners = merge->rowmap->range;
475855d1abb9SHong Zhang   len_s  = merge->len_s;
475955d1abb9SHong Zhang 
476055d1abb9SHong Zhang   /* send and recv matrix values */
47619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47629566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
476355d1abb9SHong Zhang 
47649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476555d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476655d1abb9SHong Zhang     if (!len_s[proc]) continue;
476755d1abb9SHong Zhang     i = owners[proc];
47686497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476955d1abb9SHong Zhang     k++;
477055d1abb9SHong Zhang   }
477155d1abb9SHong Zhang 
47729566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47739566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47749566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477555d1abb9SHong Zhang 
47769566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47779566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477855d1abb9SHong Zhang 
477955d1abb9SHong Zhang   /* insert mat values of mpimat */
47809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
478255d1abb9SHong Zhang 
478355d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
478455d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4785f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
478655d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4787a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478855d1abb9SHong Zhang   }
478955d1abb9SHong Zhang 
479055d1abb9SHong Zhang   /* set values of ba */
47917a2fc3feSBarry Smith   m = merge->rowmap->n;
479255d1abb9SHong Zhang   for (i = 0; i < m; i++) {
479355d1abb9SHong Zhang     arow = owners[rank] + i;
479455d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479555d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47969566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479755d1abb9SHong Zhang 
479855d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479955d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
480055d1abb9SHong Zhang     aj     = a->j + ai[arow];
4801fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
480255d1abb9SHong Zhang     nextaj = 0;
480355d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
480455d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480555d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480655d1abb9SHong Zhang       }
480755d1abb9SHong Zhang     }
480855d1abb9SHong Zhang 
480955d1abb9SHong Zhang     /* add received vals into ba */
481055d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
481155d1abb9SHong Zhang       /* i-th row */
481255d1abb9SHong Zhang       if (i == *nextrow[k]) {
481355d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4814f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4815f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
481655d1abb9SHong Zhang         nextaj = 0;
481755d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481855d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481955d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
482055d1abb9SHong Zhang           }
482155d1abb9SHong Zhang         }
48229371c9d4SSatish Balay         nextrow[k]++;
48239371c9d4SSatish Balay         nextai[k]++;
482455d1abb9SHong Zhang       }
482555d1abb9SHong Zhang     }
48269566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482755d1abb9SHong Zhang   }
48289566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
483155d1abb9SHong Zhang 
48329566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48339566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48349566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48359566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483855d1abb9SHong Zhang }
483938f152feSBarry Smith 
4840d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4841d71ae5a4SJacob Faibussowitsch {
484255a3bba9SHong Zhang   Mat                  B_mpi;
4843c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4844b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4845b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4846d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
48476497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4848c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4849b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
485055d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
485158cb9c82SHong Zhang   MPI_Status          *status;
48520298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4853be0fcf8dSHong Zhang   PetscBT              lnkbt;
485451a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4855776b82aeSLisandro Dalcin   PetscContainer       container;
485602c68681SHong Zhang 
4857e5f2cdd8SHong Zhang   PetscFunctionBegin;
48589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48593c2c1871SHong Zhang 
486038f152feSBarry Smith   /* make sure it is a PETSc comm */
48619566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
486455d1abb9SHong Zhang 
48659566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4867e5f2cdd8SHong Zhang 
48686abd8857SHong Zhang   /* determine row ownership */
48699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487655d1abb9SHong Zhang 
48777a2fc3feSBarry Smith   m      = merge->rowmap->n;
48787a2fc3feSBarry Smith   owners = merge->rowmap->range;
48796abd8857SHong Zhang 
48806abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48813e06a4e6SHong Zhang   len_s = merge->len_s;
488251a7d1a8SHong Zhang 
48832257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4884c2234fe3SHong Zhang   merge->nsend = 0;
48856497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48862257cef7SHong Zhang     len_si[proc] = 0;
48873e06a4e6SHong Zhang     if (proc == rank) {
48886abd8857SHong Zhang       len_s[proc] = 0;
48893e06a4e6SHong Zhang     } else {
48906497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48916497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48923e06a4e6SHong Zhang     }
48933e06a4e6SHong Zhang     if (len_s[proc]) {
4894c2234fe3SHong Zhang       merge->nsend++;
48952257cef7SHong Zhang       nrows = 0;
48962257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48972257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48982257cef7SHong Zhang       }
48996497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
49002257cef7SHong Zhang       len += len_si[proc];
4901409913e3SHong Zhang     }
490258cb9c82SHong Zhang   }
4903409913e3SHong Zhang 
49042257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49059566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49069566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4907671beff6SHong Zhang 
49083e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49099566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49109566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
491102c68681SHong Zhang 
49123e06a4e6SHong Zhang   /* post the Isend of j-structure */
49139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49143e06a4e6SHong Zhang 
49156497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4916409913e3SHong Zhang     if (!len_s[proc]) continue;
491702c68681SHong Zhang     i = owners[proc];
49186497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491951a7d1a8SHong Zhang     k++;
492051a7d1a8SHong Zhang   }
492151a7d1a8SHong Zhang 
49223e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49239566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49249566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492502c68681SHong Zhang 
492602c68681SHong Zhang   /* send and recv i-structure */
49279566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49289566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492902c68681SHong Zhang 
49309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49313e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49326497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
493302c68681SHong Zhang     if (!len_s[proc]) continue;
49343e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49353e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49363e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49373e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49383e06a4e6SHong Zhang     */
49392257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49403e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49413e06a4e6SHong Zhang     buf_si[0]   = nrows;
49423e06a4e6SHong Zhang     buf_si_i[0] = 0;
49433e06a4e6SHong Zhang     nrows       = 0;
49443e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49453e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49463e06a4e6SHong Zhang       if (anzi) {
49473e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49483e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49493e06a4e6SHong Zhang         nrows++;
49503e06a4e6SHong Zhang       }
49513e06a4e6SHong Zhang     }
49526497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
495302c68681SHong Zhang     k++;
49542257cef7SHong Zhang     buf_si += len_si[proc];
495502c68681SHong Zhang   }
49562257cef7SHong Zhang 
49579566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49589566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495902c68681SHong Zhang 
49609566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
496148a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49623e06a4e6SHong Zhang 
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49659566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49669566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49679566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49689566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49699566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
497058cb9c82SHong Zhang 
4971bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
497258cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
497458cb9c82SHong Zhang   bi[0] = 0;
497558cb9c82SHong Zhang 
4976be0fcf8dSHong Zhang   /* create and initialize a linked list */
4977be0fcf8dSHong Zhang   nlnk = N + 1;
49789566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497958cb9c82SHong Zhang 
4980bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4981bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49829566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49832205254eSKarl Rupp 
498458cb9c82SHong Zhang   current_space = free_space;
498558cb9c82SHong Zhang 
4986bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49881d79065fSBarry Smith 
49893e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49902257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49913e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49923e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4993a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49943e06a4e6SHong Zhang   }
49952257cef7SHong Zhang 
4996d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4997bcc1bcd5SHong Zhang   len = 0;
499858cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499958cb9c82SHong Zhang     bnzi = 0;
500058cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
500158cb9c82SHong Zhang     arow = owners[rank] + i;
500258cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
500358cb9c82SHong Zhang     aj   = a->j + ai[arow];
50049566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500558cb9c82SHong Zhang     bnzi += nlnk;
500658cb9c82SHong Zhang     /* add received col data into lnk */
500751a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500855d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50093e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50103e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50119566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50123e06a4e6SHong Zhang         bnzi += nlnk;
50139371c9d4SSatish Balay         nextrow[k]++;
50149371c9d4SSatish Balay         nextai[k]++;
50153e06a4e6SHong Zhang       }
501658cb9c82SHong Zhang     }
5017bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501858cb9c82SHong Zhang 
501958cb9c82SHong Zhang     /* if free space is not available, make more free space */
502048a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
502158cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50229566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50239566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5024bcc1bcd5SHong Zhang 
502558cb9c82SHong Zhang     current_space->array += bnzi;
502658cb9c82SHong Zhang     current_space->local_used += bnzi;
502758cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502858cb9c82SHong Zhang 
502958cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
503058cb9c82SHong Zhang   }
5031bcc1bcd5SHong Zhang 
50329566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5033bcc1bcd5SHong Zhang 
50349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50359566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50369566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5037409913e3SHong Zhang 
5038bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50399566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50409566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
504154b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50429566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
504354b84b50SHong Zhang   } else {
50449566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504554b84b50SHong Zhang   }
50469566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50479566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50489566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5049d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50509566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
505158cb9c82SHong Zhang 
505290431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50536abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5054affca5deSHong Zhang   merge->bi        = bi;
5055affca5deSHong Zhang   merge->bj        = bj;
505602c68681SHong Zhang   merge->buf_ri    = buf_ri;
505702c68681SHong Zhang   merge->buf_rj    = buf_rj;
50580298fd71SBarry Smith   merge->coi       = NULL;
50590298fd71SBarry Smith   merge->coj       = NULL;
50600298fd71SBarry Smith   merge->owners_co = NULL;
5061affca5deSHong Zhang 
50629566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5063bf0cc555SLisandro Dalcin 
5064affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50659566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50669566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
506749abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50689566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50699566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5070affca5deSHong Zhang   *mpimat = B_mpi;
507138f152feSBarry Smith 
50729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5074e5f2cdd8SHong Zhang }
507525616d81SHong Zhang 
5076cc4c1da9SBarry Smith /*@
507711a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5078d4036a1aSHong Zhang   matrices from each processor
5079d4036a1aSHong Zhang 
5080d083f849SBarry Smith   Collective
5081d4036a1aSHong Zhang 
5082d4036a1aSHong Zhang   Input Parameters:
5083d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5084d4036a1aSHong Zhang . seqmat - the input sequential matrices
508511a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508611a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508711a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5088d4036a1aSHong Zhang 
5089d4036a1aSHong Zhang   Output Parameter:
5090d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5091d4036a1aSHong Zhang 
5092d4036a1aSHong Zhang   Level: advanced
5093d4036a1aSHong Zhang 
509411a5261eSBarry Smith   Note:
5095d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5096d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5097b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50982ef1f0ffSBarry Smith 
50991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5100d4036a1aSHong Zhang @*/
5101d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5102d71ae5a4SJacob Faibussowitsch {
51037e63b356SHong Zhang   PetscMPIInt size;
510455d1abb9SHong Zhang 
510555d1abb9SHong Zhang   PetscFunctionBegin;
51069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51077e63b356SHong Zhang   if (size == 1) {
51089566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51097e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51109566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51117e63b356SHong Zhang     } else {
51129566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51137e63b356SHong Zhang     }
51149566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51167e63b356SHong Zhang   }
51179566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511848a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51199566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
512255d1abb9SHong Zhang }
51234ebed01fSBarry Smith 
5124bc08b0f1SBarry Smith /*@
51252920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51268a9c020eSBarry Smith 
51278a9c020eSBarry Smith   Not Collective
51288a9c020eSBarry Smith 
51292fe279fdSBarry Smith   Input Parameter:
513020f4b53cSBarry Smith . A - the matrix
51318a9c020eSBarry Smith 
51328a9c020eSBarry Smith   Output Parameter:
51338a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51348a9c020eSBarry Smith 
51358a9c020eSBarry Smith   Level: developer
51368a9c020eSBarry Smith 
51378a9c020eSBarry Smith   Notes:
51382920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51392920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51402920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51412920cce0SJacob Faibussowitsch 
514211a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51438a9c020eSBarry Smith 
51442920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51452920cce0SJacob Faibussowitsch 
514611a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51478a9c020eSBarry Smith 
51481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51498a9c020eSBarry Smith @*/
5150d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5151d71ae5a4SJacob Faibussowitsch {
51528a9c020eSBarry Smith   PetscBool mpi;
51538a9c020eSBarry Smith 
51548a9c020eSBarry Smith   PetscFunctionBegin;
51558a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51568a9c020eSBarry Smith   if (mpi) {
51578a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51588a9c020eSBarry Smith   } else {
51598a9c020eSBarry Smith     *A_loc = A;
51608a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51618a9c020eSBarry Smith   }
51623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51638a9c020eSBarry Smith }
51648a9c020eSBarry Smith 
51658a9c020eSBarry Smith /*@
51662920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516725616d81SHong Zhang 
516832fba14fSHong Zhang   Not Collective
516925616d81SHong Zhang 
517025616d81SHong Zhang   Input Parameters:
517125616d81SHong Zhang + A     - the matrix
517211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
517325616d81SHong Zhang 
517425616d81SHong Zhang   Output Parameter:
517525616d81SHong Zhang . A_loc - the local sequential matrix generated
517625616d81SHong Zhang 
517725616d81SHong Zhang   Level: developer
517825616d81SHong Zhang 
517977c65a98SStefano Zampini   Notes:
51802920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51812920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51822920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51832920cce0SJacob Faibussowitsch 
518411a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51858a9c020eSBarry Smith 
51862920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51872920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51882920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51892920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
519077c65a98SStefano Zampini 
51911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
519225616d81SHong Zhang @*/
5193d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5194d71ae5a4SJacob Faibussowitsch {
519501b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5196b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5197b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5198ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5199ce496241SStefano Zampini   PetscScalar       *ca, *cam;
520077c65a98SStefano Zampini   PetscMPIInt        size;
5201d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
52025a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52038661ff28SBarry Smith   PetscBool          match;
520425616d81SHong Zhang 
520525616d81SHong Zhang   PetscFunctionBegin;
52069566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520728b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520977c65a98SStefano Zampini   if (size == 1) {
521077c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52119566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
521277c65a98SStefano Zampini       *A_loc = mpimat->A;
521377c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52149566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521577c65a98SStefano Zampini     }
52163ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521777c65a98SStefano Zampini   }
521870a9ba44SHong Zhang 
52199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5220f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5221f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52229371c9d4SSatish Balay   ai = a->i;
52239371c9d4SSatish Balay   aj = a->j;
52249371c9d4SSatish Balay   bi = b->i;
52259371c9d4SSatish Balay   bj = b->j;
52269566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52279566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5228ce496241SStefano Zampini   aa = aav;
5229ce496241SStefano Zampini   ba = bav;
523001b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5232dea91ad1SHong Zhang     ci[0] = 0;
5233ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5236dea91ad1SHong Zhang     k = 0;
523701b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52385a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52395a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
524001b7ae99SHong Zhang       /* off-diagonal portion of A */
52415a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52425a7d977cSHong Zhang         col = cmap[*bj];
52435a7d977cSHong Zhang         if (col >= cstart) break;
52449371c9d4SSatish Balay         cj[k] = col;
52459371c9d4SSatish Balay         bj++;
52465a7d977cSHong Zhang         ca[k++] = *ba++;
52475a7d977cSHong Zhang       }
52485a7d977cSHong Zhang       /* diagonal portion of A */
52495a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52505a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52515a7d977cSHong Zhang         ca[k++] = *aa++;
52525a7d977cSHong Zhang       }
52535a7d977cSHong Zhang       /* off-diagonal portion of A */
52545a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52555a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52565a7d977cSHong Zhang         ca[k++] = *ba++;
52575a7d977cSHong Zhang       }
525825616d81SHong Zhang     }
5259dea91ad1SHong Zhang     /* put together the new matrix */
52609566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5261dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5262dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5263dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5264e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5265e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5266dea91ad1SHong Zhang     mat->nonew   = 0;
52675a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52685a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5269fff043a9SJunchao Zhang     ci  = mat->i;
5270fff043a9SJunchao Zhang     cj  = mat->j;
52719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52725a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52735a7d977cSHong Zhang       /* off-diagonal portion of A */
52745a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52755a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52765a7d977cSHong Zhang         col = cmap[*bj];
52775a7d977cSHong Zhang         if (col >= cstart) break;
52789371c9d4SSatish Balay         *cam++ = *ba++;
52799371c9d4SSatish Balay         bj++;
52805a7d977cSHong Zhang       }
52815a7d977cSHong Zhang       /* diagonal portion of A */
5282ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5283a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52845a7d977cSHong Zhang       /* off-diagonal portion of A */
5285f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52869371c9d4SSatish Balay         *cam++ = *ba++;
52879371c9d4SSatish Balay         bj++;
5288f33d1a9aSHong Zhang       }
52895a7d977cSHong Zhang     }
52909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
529198921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52949566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529625616d81SHong Zhang }
529725616d81SHong Zhang 
5298ed502f03SStefano Zampini /*@
529911a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
53004cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5301ed502f03SStefano Zampini 
5302ed502f03SStefano Zampini   Not Collective
5303ed502f03SStefano Zampini 
5304ed502f03SStefano Zampini   Input Parameters:
5305ed502f03SStefano Zampini + A     - the matrix
530611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5307ed502f03SStefano Zampini 
5308d8d19677SJose E. Roman   Output Parameters:
53092ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5310ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5311ed502f03SStefano Zampini 
5312ed502f03SStefano Zampini   Level: developer
5313ed502f03SStefano Zampini 
531411a5261eSBarry Smith   Note:
53152ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53164cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5317ed502f03SStefano Zampini 
53181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5319ed502f03SStefano Zampini @*/
5320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5321d71ae5a4SJacob Faibussowitsch {
5322ed502f03SStefano Zampini   Mat             Ao, Ad;
5323ed502f03SStefano Zampini   const PetscInt *cmap;
5324ed502f03SStefano Zampini   PetscMPIInt     size;
5325ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5326ed502f03SStefano Zampini 
5327ed502f03SStefano Zampini   PetscFunctionBegin;
53289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5330ed502f03SStefano Zampini   if (size == 1) {
5331ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53329566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5333ed502f03SStefano Zampini       *A_loc = Ad;
5334ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53359566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5336ed502f03SStefano Zampini     }
53379566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5339ed502f03SStefano Zampini   }
53409566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5342ed502f03SStefano Zampini   if (f) {
53439566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5344ed502f03SStefano Zampini   } else {
5345ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5346ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5347ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5348ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5349ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5350ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5351ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5352ed502f03SStefano Zampini     PetscScalar       *ca;
5353ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5354ed502f03SStefano Zampini 
53559566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53569566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53579566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53589566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5359ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5360ed502f03SStefano Zampini       PetscInt k;
53619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53629566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53639566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5364ed502f03SStefano Zampini       ci[0] = 0;
5365ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5366ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5367ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5368ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5369ed502f03SStefano Zampini         /* diagonal portion of A */
5370ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5371ed502f03SStefano Zampini           cj[k] = *aj++;
5372ed502f03SStefano Zampini           ca[k] = *aa++;
5373ed502f03SStefano Zampini         }
5374ed502f03SStefano Zampini         /* off-diagonal portion of A */
5375ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5376ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5377ed502f03SStefano Zampini           ca[k] = *ba++;
5378ed502f03SStefano Zampini         }
5379ed502f03SStefano Zampini       }
5380ed502f03SStefano Zampini       /* put together the new matrix */
53819566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5382ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5383ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5384ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5385ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5386ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5387ed502f03SStefano Zampini       c->nonew   = 0;
53889566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5389ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53909566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5391ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5392ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5393ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5394ed502f03SStefano Zampini         /* diagonal portion of A */
5395ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5396ed502f03SStefano Zampini         /* off-diagonal portion of A */
5397ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5398ed502f03SStefano Zampini       }
53999566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
540098921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
54019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
54029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5403ed502f03SStefano Zampini     if (glob) {
5404ed502f03SStefano Zampini       PetscInt cst, *gidx;
5405ed502f03SStefano Zampini 
54069566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5408ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5409ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54109566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5411ed502f03SStefano Zampini     }
5412ed502f03SStefano Zampini   }
54139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5415ed502f03SStefano Zampini }
5416ed502f03SStefano Zampini 
541732fba14fSHong Zhang /*@C
541811a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541932fba14fSHong Zhang 
542032fba14fSHong Zhang   Not Collective
542132fba14fSHong Zhang 
542232fba14fSHong Zhang   Input Parameters:
542332fba14fSHong Zhang + A     - the matrix
542411a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542520f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542620f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542732fba14fSHong Zhang 
542832fba14fSHong Zhang   Output Parameter:
542932fba14fSHong Zhang . A_loc - the local sequential matrix generated
543032fba14fSHong Zhang 
543132fba14fSHong Zhang   Level: developer
543232fba14fSHong Zhang 
54331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
543432fba14fSHong Zhang @*/
5435d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5436d71ae5a4SJacob Faibussowitsch {
543732fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543832fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543932fba14fSHong Zhang   IS          isrowa, iscola;
544032fba14fSHong Zhang   Mat        *aloc;
54414a2b5492SBarry Smith   PetscBool   match;
544232fba14fSHong Zhang 
544332fba14fSHong Zhang   PetscFunctionBegin;
54449566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544528b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544732fba14fSHong Zhang   if (!row) {
54489371c9d4SSatish Balay     start = A->rmap->rstart;
54499371c9d4SSatish Balay     end   = A->rmap->rend;
54509566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
545132fba14fSHong Zhang   } else {
545232fba14fSHong Zhang     isrowa = *row;
545332fba14fSHong Zhang   }
545432fba14fSHong Zhang   if (!col) {
5455d0f46423SBarry Smith     start = A->cmap->rstart;
545632fba14fSHong Zhang     cmap  = a->garray;
5457d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5458d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
546032fba14fSHong Zhang     ncols = 0;
546132fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
546232fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
546332fba14fSHong Zhang       else break;
546432fba14fSHong Zhang     }
546532fba14fSHong Zhang     imark = i;
546632fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546732fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54689566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546932fba14fSHong Zhang   } else {
547032fba14fSHong Zhang     iscola = *col;
547132fba14fSHong Zhang   }
547232fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
547432fba14fSHong Zhang     aloc[0] = *A_loc;
547532fba14fSHong Zhang   }
54769566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5477109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54789566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5479109e0772SStefano Zampini   }
548032fba14fSHong Zhang   *A_loc = aloc[0];
54819566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
548248a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
548348a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548632fba14fSHong Zhang }
548732fba14fSHong Zhang 
54885c65b9ecSFande Kong /*
54895c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54905c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54915c65b9ecSFande Kong  * on a global size.
54925c65b9ecSFande Kong  * */
5493ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5494d71ae5a4SJacob Faibussowitsch {
54955c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5496f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5497131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5498131c27b5Sprj-   PetscMPIInt            owner;
54995c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
55005c65b9ecSFande Kong   const PetscInt        *lrowindices;
55015c65b9ecSFande Kong   PetscSF                sf, osf;
55025c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55035c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55045c65b9ecSFande Kong   MPI_Comm               comm;
55055c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5506fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55075c65b9ecSFande Kong 
55085c65b9ecSFande Kong   PetscFunctionBegin;
55099566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55105c65b9ecSFande Kong   /* plocalsize is the number of roots
55115c65b9ecSFande Kong    * nrows is the number of leaves
55125c65b9ecSFande Kong    * */
55139566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55149566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55159566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55169566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55175c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55185c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55195c65b9ecSFande Kong      * The row could be local or remote
55205c65b9ecSFande Kong      * */
552134bcad68SFande Kong     owner = 0;
552234bcad68SFande Kong     lidx  = 0;
55239566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55245c65b9ecSFande Kong     iremote[i].index = lidx;
55255c65b9ecSFande Kong     iremote[i].rank  = owner;
55265c65b9ecSFande Kong   }
55275c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55289566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5529f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55305c65b9ecSFande Kong    * offsets
55315c65b9ecSFande Kong    * */
55329566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55339566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5535bc8e477aSFande Kong 
55369566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55389566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55395c65b9ecSFande Kong   roffsets[0] = 0;
55405c65b9ecSFande Kong   roffsets[1] = 0;
55415c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55424cf0e950SBarry Smith     /* diagonal */
55435c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55444cf0e950SBarry Smith     /* off-diagonal */
55455c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55465c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55475c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55485c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55495c65b9ecSFande Kong   }
55509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55525c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55549566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55569566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55589566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55599566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55605c65b9ecSFande Kong   dntotalcols = 0;
55615c65b9ecSFande Kong   ontotalcols = 0;
5562bc8e477aSFande Kong   ncol        = 0;
55635c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55645c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5565bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55664cf0e950SBarry Smith     /* diagonal */
55675c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55684cf0e950SBarry Smith     /* off-diagonal */
55695c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55705c65b9ecSFande Kong   }
55715c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55725c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55735c65b9ecSFande Kong    * */
55749566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55759566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55769566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55775c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55784cf0e950SBarry Smith   /* diagonal */
55799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55804cf0e950SBarry Smith   /* off-diagonal */
55819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55824cf0e950SBarry Smith   /* diagonal */
55839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55844cf0e950SBarry Smith   /* off-diagonal */
55859566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55865c65b9ecSFande Kong   dntotalcols = 0;
55875c65b9ecSFande Kong   ontotalcols = 0;
55885c65b9ecSFande Kong   ntotalcols  = 0;
55895c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
559034bcad68SFande Kong     owner = 0;
55919566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55925c65b9ecSFande Kong     /* Set iremote for diag matrix */
55935c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55945c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55955c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55965c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55975c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55985c65b9ecSFande Kong     }
55994cf0e950SBarry Smith     /* off-diagonal */
56005c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
56015c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
56025c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56035c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56045c65b9ecSFande Kong     }
56055c65b9ecSFande Kong   }
56069566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56079566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56089566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56099566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56105c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56115c65b9ecSFande Kong    * Diag matrix
56125c65b9ecSFande Kong    * */
56139566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56165c65b9ecSFande Kong 
56179566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56184cf0e950SBarry Smith   /* off-diagonal */
56199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56244cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56259566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56269566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56279566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56285c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56295c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56309566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56315c65b9ecSFande Kong   /* We want P_oth store global indices */
56329566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56335c65b9ecSFande Kong   /* Use memory scalable approach */
56349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56359566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56369566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56379566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56385c65b9ecSFande Kong   /* Convert back to local indices */
56395c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56415c65b9ecSFande Kong   nout = 0;
56429566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
564308401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56449566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56455c65b9ecSFande Kong   /* Exchange values */
56469566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56479566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56505c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56515c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56545c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56559566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56569566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56589566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56605c65b9ecSFande Kong }
56615c65b9ecSFande Kong 
56625c65b9ecSFande Kong /*
56635c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56645c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56655c65b9ecSFande Kong  * */
5666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5667d71ae5a4SJacob Faibussowitsch {
56685c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5669bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5670bc8e477aSFande Kong   IS          rows, map;
5671bc8e477aSFande Kong   PetscHMapI  hamp;
5672bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56735c65b9ecSFande Kong   MPI_Comm    comm;
56745c65b9ecSFande Kong   PetscSF     sf, osf;
5675bc8e477aSFande Kong   PetscBool   has;
56765c65b9ecSFande Kong 
56775c65b9ecSFande Kong   PetscFunctionBegin;
56789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56799566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56805c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56815c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56825c65b9ecSFande Kong    * */
56835c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56845c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5685eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56869566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5687bc8e477aSFande Kong     count = 0;
5688bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5689bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5690bc8e477aSFande Kong       key = a->garray[i] / dof;
56919566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5692bc8e477aSFande Kong       if (!has) {
5693bc8e477aSFande Kong         mapping[i] = count;
56949566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5695bc8e477aSFande Kong       } else {
5696bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5697bc8e477aSFande Kong         mapping[i] = count - 1;
56985c65b9ecSFande Kong       }
5699bc8e477aSFande Kong     }
57009566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
57019566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5702eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57039566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57045c65b9ecSFande Kong     off = 0;
57059566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57069566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57079566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57089566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57095c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57109566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57119566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57129566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57139566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57149566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57155c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57165c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571735cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5718fff043a9SJunchao Zhang      */
5719fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5720fff043a9SJunchao Zhang 
57219566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57229566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
572308401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57245c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57255c65b9ecSFande Kong     /* Update values in place */
57269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57289566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57299566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57309566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57319566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57329566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57339566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57346718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57375c65b9ecSFande Kong }
57385c65b9ecSFande Kong 
573925616d81SHong Zhang /*@C
574020f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
574125616d81SHong Zhang 
5742c3339decSBarry Smith   Collective
574325616d81SHong Zhang 
574425616d81SHong Zhang   Input Parameters:
574511a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574611a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574825616d81SHong Zhang 
5749f1a722f8SMatthew G. Knepley   Output Parameters:
575027430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
575127430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5752f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
575325616d81SHong Zhang 
575425616d81SHong Zhang   Level: developer
575525616d81SHong Zhang 
575620f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575725616d81SHong Zhang @*/
5758d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5759d71ae5a4SJacob Faibussowitsch {
5760899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5761b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
576225616d81SHong Zhang   IS          isrowb, iscolb;
57630298fd71SBarry Smith   Mat        *bseq = NULL;
576425616d81SHong Zhang 
576525616d81SHong Zhang   PetscFunctionBegin;
576620f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576720f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576925616d81SHong Zhang 
577025616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5771d0f46423SBarry Smith     start = A->cmap->rstart;
577225616d81SHong Zhang     cmap  = a->garray;
5773d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5774d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577625616d81SHong Zhang     ncols = 0;
57770390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577825616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577925616d81SHong Zhang       else break;
578025616d81SHong Zhang     }
578125616d81SHong Zhang     imark = i;
57820390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57830390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57849566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57859566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578625616d81SHong Zhang   } else {
578708401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57889371c9d4SSatish Balay     isrowb = *rowb;
57899371c9d4SSatish Balay     iscolb = *colb;
57909566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
579125616d81SHong Zhang     bseq[0] = *B_seq;
579225616d81SHong Zhang   }
57939566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
579425616d81SHong Zhang   *B_seq = bseq[0];
57959566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579625616d81SHong Zhang   if (!rowb) {
57979566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579825616d81SHong Zhang   } else {
579925616d81SHong Zhang     *rowb = isrowb;
580025616d81SHong Zhang   }
580125616d81SHong Zhang   if (!colb) {
58029566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
580325616d81SHong Zhang   } else {
580425616d81SHong Zhang     *colb = iscolb;
580525616d81SHong Zhang   }
58069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580825616d81SHong Zhang }
5809429d309bSHong Zhang 
5810f8487c73SHong Zhang /*
581127430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
581201b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5813429d309bSHong Zhang 
5814c3339decSBarry Smith     Collective
5815429d309bSHong Zhang 
5816429d309bSHong Zhang    Input Parameters:
581727430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581827430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5819429d309bSHong Zhang 
5820429d309bSHong Zhang    Output Parameter:
58210298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58220298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58230298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5824598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5825429d309bSHong Zhang 
582611a5261eSBarry Smith     Developer Note:
582711a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58286eb45d04SBarry Smith      for this matrix. This is not desirable..
58296eb45d04SBarry Smith 
5830429d309bSHong Zhang     Level: developer
5831429d309bSHong Zhang 
5832f8487c73SHong Zhang */
58336497c311SBarry Smith 
5834d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5835d71ae5a4SJacob Faibussowitsch {
5836899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
58374b8d542aSHong Zhang   VecScatter         ctx;
5838ce94432eSBarry Smith   MPI_Comm           comm;
58393515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58406497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
58413515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5842277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
58436497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5844277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5845ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5846ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5847429d309bSHong Zhang 
5848429d309bSHong Zhang   PetscFunctionBegin;
58499566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5851a7c7454dSHong Zhang 
585220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
585320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58549566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5856a6b2eed2SHong Zhang 
5857ec07b8f8SHong Zhang   if (size == 1) {
5858ec07b8f8SHong Zhang     startsj_s = NULL;
5859ec07b8f8SHong Zhang     bufa_ptr  = NULL;
586052f7967eSHong Zhang     *B_oth    = NULL;
58613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5862ec07b8f8SHong Zhang   }
5863ec07b8f8SHong Zhang 
5864fa83eaafSHong Zhang   ctx = a->Mvctx;
58654b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58664b8d542aSHong Zhang 
58679566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58683515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58699566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58709566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5872ddea5d60SJunchao Zhang   rwaits = reqs;
58738e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5874429d309bSHong Zhang 
5875b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5876429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5877a6b2eed2SHong Zhang     /* i-array */
5878a6b2eed2SHong Zhang     /*  post receives */
58799566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5880a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
588174268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5882e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58836497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5884429d309bSHong Zhang     }
5885a6b2eed2SHong Zhang 
5886a6b2eed2SHong Zhang     /* pack the outgoing message */
58879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58882205254eSKarl Rupp 
58892205254eSKarl Rupp     sstartsj[0] = 0;
58902205254eSKarl Rupp     rstartsj[0] = 0;
5891a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58923515ee7fSJunchao Zhang     if (nsends) {
58933515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58949566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58953515ee7fSJunchao Zhang     }
5896a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58973515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5898e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589987025532SHong Zhang       for (j = 0; j < nrows; j++) {
5900d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5901e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
59029566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
59032205254eSKarl Rupp 
5904e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59052205254eSKarl Rupp 
5906e42f35eeSHong Zhang           len += ncols;
59079566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5908e42f35eeSHong Zhang         }
5909a6b2eed2SHong Zhang         k++;
5910429d309bSHong Zhang       }
59116497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59122205254eSKarl Rupp 
5913dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5914429d309bSHong Zhang     }
591587025532SHong Zhang     /* recvs and sends of i-array are completed */
59169566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59179566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5918e42f35eeSHong Zhang 
5919a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5922a6b2eed2SHong Zhang 
592387025532SHong Zhang     /* create i-array of B_oth */
59249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59252205254eSKarl Rupp 
592687025532SHong Zhang     b_othi[0] = 0;
5927a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5928a6b2eed2SHong Zhang     k         = 0;
5929a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59303515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59313515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
593287025532SHong Zhang       for (j = 0; j < nrows; j++) {
593387025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59349566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5935f91af8c7SBarry Smith         k++;
5936a6b2eed2SHong Zhang       }
5937dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5938a6b2eed2SHong Zhang     }
59399566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5940a6b2eed2SHong Zhang 
59416aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59429566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5944a6b2eed2SHong Zhang 
594587025532SHong Zhang     /* j-array */
5946a6b2eed2SHong Zhang     /*  post receives of j-array */
5947a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594887025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59496497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5950a6b2eed2SHong Zhang     }
5951e42f35eeSHong Zhang 
5952e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59533515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5954a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5955e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5956a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595787025532SHong Zhang       for (j = 0; j < nrows; j++) {
5958d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5959e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59609566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5961ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59629566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5963e42f35eeSHong Zhang         }
596487025532SHong Zhang       }
59656497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596687025532SHong Zhang     }
596787025532SHong Zhang 
596887025532SHong Zhang     /* recvs and sends of j-array are completed */
59699566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
597087025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5971b7f45c76SHong Zhang     sstartsj = *startsj_s;
59721d79065fSBarry Smith     rstartsj = *startsj_r;
597387025532SHong Zhang     bufa     = *bufa_ptr;
59749566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5975ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597687025532SHong Zhang 
597787025532SHong Zhang   /* a-array */
597887025532SHong Zhang   /*  post receives of a-array */
597987025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
598087025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59816497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
598287025532SHong Zhang   }
5983e42f35eeSHong Zhang 
5984e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59853515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598687025532SHong Zhang   for (i = 0; i < nsends; i++) {
5987e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598887025532SHong Zhang     bufA  = bufa + sstartsj[i];
598987025532SHong Zhang     for (j = 0; j < nrows; j++) {
5990d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5991e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59929566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5993ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59949566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5995e42f35eeSHong Zhang       }
5996a6b2eed2SHong Zhang     }
59976497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5998a6b2eed2SHong Zhang   }
599987025532SHong Zhang   /* recvs and sends of a-array are completed */
60009566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
60019566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
6002a6b2eed2SHong Zhang 
600387025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6004dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
6005dd460d27SBarry Smith 
6006a6b2eed2SHong Zhang     /* put together the new matrix */
60079566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6008a6b2eed2SHong Zhang 
6009a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6010a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
601187025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6012e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6013e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
601487025532SHong Zhang     b_oth->nonew   = 0;
6015a6b2eed2SHong Zhang 
60169566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6017b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60189566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60199566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6020dea91ad1SHong Zhang     } else {
6021b7f45c76SHong Zhang       *startsj_s = sstartsj;
60221d79065fSBarry Smith       *startsj_r = rstartsj;
602387025532SHong Zhang       *bufa_ptr  = bufa;
602487025532SHong Zhang     }
6025fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6027dea91ad1SHong Zhang   }
60283515ee7fSJunchao Zhang 
60299566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60309566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6033429d309bSHong Zhang }
6034ccd8e176SBarry Smith 
6035cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6036cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6037ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60389779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6039a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6040191b95cbSRichard Tran Mills #endif
6041ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6042cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60435d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6044cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60455d7652ecSHong Zhang #endif
6046d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6047d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6048d24d4204SJose E. Roman #endif
604963c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
605063c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
605163c07aadSStefano Zampini #endif
60523338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60533338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60543338378cSStefano Zampini #endif
6055d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6056d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6057d5e393b6SSuyash Tandon #endif
60583d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60593d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60603d0639e7SStefano Zampini #endif
6061d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60624222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60634222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
606417667f90SBarry Smith 
6065fc4dec0aSBarry Smith /*
6066fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6067fc4dec0aSBarry Smith 
6068fc4dec0aSBarry Smith                n                       p                          p
60692da392ccSBarry Smith         [             ]       [             ]         [                 ]
60702da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60712da392ccSBarry Smith         [             ]       [             ]         [                 ]
6072fc4dec0aSBarry Smith 
6073fc4dec0aSBarry Smith */
6074d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6075d71ae5a4SJacob Faibussowitsch {
6076fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6077fc4dec0aSBarry Smith 
6078fc4dec0aSBarry Smith   PetscFunctionBegin;
60799566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60809566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6081fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60829566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60847fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60859566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60869566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6088fc4dec0aSBarry Smith }
6089fc4dec0aSBarry Smith 
6090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6091d71ae5a4SJacob Faibussowitsch {
60926718818eSStefano Zampini   PetscBool cisdense;
6093fc4dec0aSBarry Smith 
6094fc4dec0aSBarry Smith   PetscFunctionBegin;
609508401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60969566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60979566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6098d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609948a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
61009566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6101f75ecaa4SHong Zhang 
61024222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
61033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6104fc4dec0aSBarry Smith }
6105fc4dec0aSBarry Smith 
6106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6107d71ae5a4SJacob Faibussowitsch {
61084222ddf1SHong Zhang   Mat_Product *product = C->product;
61094222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6110fc4dec0aSBarry Smith 
6111fc4dec0aSBarry Smith   PetscFunctionBegin;
611220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
611320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61144222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61154222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6117fc4dec0aSBarry Smith }
6118fc4dec0aSBarry Smith 
6119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6120d71ae5a4SJacob Faibussowitsch {
61214222ddf1SHong Zhang   Mat_Product *product = C->product;
61224222ddf1SHong Zhang 
61234222ddf1SHong Zhang   PetscFunctionBegin;
612448a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61264222ddf1SHong Zhang }
6127394ed5ebSJunchao Zhang 
612827430b45SBarry Smith /*
612927430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6130394ed5ebSJunchao Zhang 
6131394ed5ebSJunchao Zhang   Input Parameters:
6132394ed5ebSJunchao Zhang 
6133651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6134651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6135394ed5ebSJunchao Zhang 
6136158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6137394ed5ebSJunchao Zhang 
6138394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6139394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6140394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6141394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6142394ed5ebSJunchao Zhang 
6143394ed5ebSJunchao Zhang     Similar for Set2.
6144394ed5ebSJunchao Zhang 
6145394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6146394ed5ebSJunchao Zhang 
6147158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6148394ed5ebSJunchao Zhang 
6149394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6150394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6151394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6152394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6153394ed5ebSJunchao Zhang */
6154d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6155d71ae5a4SJacob Faibussowitsch {
6156394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6157394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6158394ed5ebSJunchao Zhang 
6159394ed5ebSJunchao Zhang   PetscFunctionBegin;
61609566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6161394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6162394ed5ebSJunchao Zhang   i[0]        = 0;
6163394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6164394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6165394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6166394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6167394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6168394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6169394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6170394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6171394ed5ebSJunchao Zhang         imap1[t1] = t;
6172394ed5ebSJunchao Zhang         imap2[t2] = t;
6173394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6174394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61759371c9d4SSatish Balay         t1++;
61769371c9d4SSatish Balay         t2++;
61779371c9d4SSatish Balay         t++;
6178394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6179394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6180394ed5ebSJunchao Zhang         imap1[t1] = t;
6181394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61829371c9d4SSatish Balay         t1++;
61839371c9d4SSatish Balay         t++;
6184394ed5ebSJunchao Zhang       } else {
6185394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6186394ed5ebSJunchao Zhang         imap2[t2] = t;
6187394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61889371c9d4SSatish Balay         t2++;
61899371c9d4SSatish Balay         t++;
6190394ed5ebSJunchao Zhang       }
6191394ed5ebSJunchao Zhang     }
6192394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6193394ed5ebSJunchao Zhang     while (b1 < e1) {
6194394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6195394ed5ebSJunchao Zhang       imap1[t1] = t;
6196394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61979371c9d4SSatish Balay       t1++;
61989371c9d4SSatish Balay       t++;
6199394ed5ebSJunchao Zhang     }
6200394ed5ebSJunchao Zhang     while (b2 < e2) {
6201394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6202394ed5ebSJunchao Zhang       imap2[t2] = t;
6203394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
62049371c9d4SSatish Balay       t2++;
62059371c9d4SSatish Balay       t++;
6206394ed5ebSJunchao Zhang     }
62076497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6208394ed5ebSJunchao Zhang   }
62093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6210394ed5ebSJunchao Zhang }
6211394ed5ebSJunchao Zhang 
621227430b45SBarry Smith /*
621327430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6214394ed5ebSJunchao Zhang 
6215394ed5ebSJunchao Zhang   Input Parameters:
6216394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6217394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6218394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6219394ed5ebSJunchao Zhang 
6220394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6221394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6222394ed5ebSJunchao Zhang 
6223394ed5ebSJunchao Zhang   Output Parameters:
6224394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6225394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6226394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6227394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6228394ed5ebSJunchao Zhang 
6229394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6230158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6231158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6232394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6233394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6234394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6235394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6236394ed5ebSJunchao Zhang 
6237394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6238394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6239394ed5ebSJunchao Zhang 
6240394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6241394ed5ebSJunchao Zhang 
6242158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6243394ed5ebSJunchao Zhang */
6244d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6245d71ae5a4SJacob Faibussowitsch {
6246394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6247394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6248394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6249394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6250394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6251394ed5ebSJunchao Zhang 
6252394ed5ebSJunchao Zhang   PetscFunctionBegin;
62539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6255394ed5ebSJunchao Zhang   m = rend - rstart;
6256394ed5ebSJunchao Zhang 
6257651b1cf9SStefano Zampini   /* Skip negative rows */
6258651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62599371c9d4SSatish Balay     if (i[k] >= 0) break;
6260394ed5ebSJunchao Zhang 
6261394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6262394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6263394ed5ebSJunchao Zhang   */
6264394ed5ebSJunchao Zhang   while (k < n) {
6265394ed5ebSJunchao Zhang     row = i[k];
6266394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62679371c9d4SSatish Balay     for (s = k; s < n; s++)
62689371c9d4SSatish Balay       if (i[s] != row) break;
6269651b1cf9SStefano Zampini 
62701690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6271394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62721690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
627354c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6274394ed5ebSJunchao Zhang     }
62759566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6276158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6277394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6278394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6279394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6280394ed5ebSJunchao Zhang 
6281394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6282394ed5ebSJunchao Zhang     Atot += mid - k;
6283394ed5ebSJunchao Zhang     Btot += s - mid;
6284394ed5ebSJunchao Zhang 
6285651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6286394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6287394ed5ebSJunchao Zhang       col = j[p];
62889371c9d4SSatish Balay       do {
62891690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62909371c9d4SSatish Balay         p++;
6291651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6292394ed5ebSJunchao Zhang       Annz++;
6293394ed5ebSJunchao Zhang     }
6294394ed5ebSJunchao Zhang 
6295651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6296394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6297394ed5ebSJunchao Zhang       col = j[p];
6298d71ae5a4SJacob Faibussowitsch       do {
6299d71ae5a4SJacob Faibussowitsch         p++;
6300d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6301394ed5ebSJunchao Zhang       Bnnz++;
6302394ed5ebSJunchao Zhang     }
6303394ed5ebSJunchao Zhang     k = s;
6304394ed5ebSJunchao Zhang   }
6305394ed5ebSJunchao Zhang 
6306394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6307158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6308158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6309158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6310158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6311394ed5ebSJunchao Zhang 
63126aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6313394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6314394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6315394ed5ebSJunchao Zhang     k   = rowBegin[r];
6316394ed5ebSJunchao Zhang     mid = rowMid[r];
6317394ed5ebSJunchao Zhang     s   = rowEnd[r];
63188e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63198e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6320394ed5ebSJunchao Zhang     Atot += mid - k;
6321394ed5ebSJunchao Zhang     Btot += s - mid;
6322394ed5ebSJunchao Zhang 
6323394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6324394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6325394ed5ebSJunchao Zhang       col = j[p];
6326394ed5ebSJunchao Zhang       q   = p;
6327d71ae5a4SJacob Faibussowitsch       do {
6328d71ae5a4SJacob Faibussowitsch         p++;
6329d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6330394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6331394ed5ebSJunchao Zhang       Annz++;
6332394ed5ebSJunchao Zhang     }
6333394ed5ebSJunchao Zhang 
6334394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6335394ed5ebSJunchao Zhang       col = j[p];
6336394ed5ebSJunchao Zhang       q   = p;
6337d71ae5a4SJacob Faibussowitsch       do {
6338d71ae5a4SJacob Faibussowitsch         p++;
6339d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6340394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6341394ed5ebSJunchao Zhang       Bnnz++;
6342394ed5ebSJunchao Zhang     }
6343394ed5ebSJunchao Zhang   }
6344394ed5ebSJunchao Zhang   /* Output */
6345394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6346394ed5ebSJunchao Zhang   *Annz_  = Annz;
6347394ed5ebSJunchao Zhang   *Atot_  = Atot;
6348394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6349394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6350394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6351394ed5ebSJunchao Zhang   *Btot_  = Btot;
6352394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6354394ed5ebSJunchao Zhang }
6355394ed5ebSJunchao Zhang 
635627430b45SBarry Smith /*
635727430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6358158ec288SJunchao Zhang 
6359158ec288SJunchao Zhang   Input Parameters:
6360158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6361158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6362158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6363651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6364158ec288SJunchao Zhang 
6365158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6366158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6367158ec288SJunchao Zhang 
6368158ec288SJunchao Zhang   Example:
6369158ec288SJunchao Zhang     nnz1 = 4
6370158ec288SJunchao Zhang     nnz  = 6
6371158ec288SJunchao Zhang     imap = [1,3,4,5]
6372158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6373158ec288SJunchao Zhang    then,
6374158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6375158ec288SJunchao Zhang */
6376d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6377d71ae5a4SJacob Faibussowitsch {
6378158ec288SJunchao Zhang   PetscCount k, p;
6379158ec288SJunchao Zhang 
6380158ec288SJunchao Zhang   PetscFunctionBegin;
6381158ec288SJunchao Zhang   jmap_new[0] = 0;
6382158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6383158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6384158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6385158ec288SJunchao Zhang   }
6386158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6388158ec288SJunchao Zhang }
6389158ec288SJunchao Zhang 
639049abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63912c4ab24aSJunchao Zhang {
639249abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63932c4ab24aSJunchao Zhang 
63942c4ab24aSJunchao Zhang   PetscFunctionBegin;
63952c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
64022c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
64032c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
64042c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64052c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64062c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64072c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64082c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64092c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64102c4ab24aSJunchao Zhang }
64112c4ab24aSJunchao Zhang 
6412d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6413d71ae5a4SJacob Faibussowitsch {
6414394ed5ebSJunchao Zhang   MPI_Comm             comm;
6415394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6416394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6417394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6418394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64192c4ab24aSJunchao Zhang   PetscContainer       container;
64202c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6421394ed5ebSJunchao Zhang 
6422394ed5ebSJunchao Zhang   PetscFunctionBegin;
64239566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64249566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6425cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6426eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6427cbc6b225SStefano Zampini #else
64289566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6429cbc6b225SStefano Zampini #endif
64309566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6431cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6432cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6433cbc6b225SStefano Zampini 
64349566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64419566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64429566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6443394ed5ebSJunchao Zhang 
64446aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6445394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6446394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6447e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6448e8729f6fSJunchao Zhang 
6449e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6450394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6451394ed5ebSJunchao Zhang 
6452394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6453394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6454394ed5ebSJunchao Zhang      will have positive row indices.
6455394ed5ebSJunchao Zhang   */
6456394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64571690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64581690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6459f7d195e4SLawrence Mitchell     else {
6460f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64611690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6462f7d195e4SLawrence Mitchell     }
6463394ed5ebSJunchao Zhang   }
6464394ed5ebSJunchao Zhang 
6465da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64669566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6467651b1cf9SStefano Zampini 
6468651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6469651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64701690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64716497c311SBarry Smith   PetscCount i1start = k;
6472651b1cf9SStefano Zampini 
64731690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64741690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6475394ed5ebSJunchao Zhang 
6476394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6477394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6478394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6479394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6480394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6481394ed5ebSJunchao Zhang   const PetscInt *ranges;
6482394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6483394ed5ebSJunchao Zhang 
64849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6486394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6487394ed5ebSJunchao Zhang     PetscMPIInt owner;
6488394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6489cbc6b225SStefano Zampini 
6490394ed5ebSJunchao Zhang     /* Locate a row range */
6491394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64929566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6493394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6494394ed5ebSJunchao Zhang 
6495394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64969566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6497394ed5ebSJunchao Zhang 
6498394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6499394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6500394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6501394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6502394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6503cbc6b225SStefano Zampini 
65049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65059566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65069566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65079566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6508394ed5ebSJunchao Zhang       sendto   = sendto2;
6509394ed5ebSJunchao Zhang       nentries = nentries2;
6510394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6511394ed5ebSJunchao Zhang     }
6512394ed5ebSJunchao Zhang     sendto[nsend] = owner;
65136497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6514394ed5ebSJunchao Zhang     nsend++;
6515394ed5ebSJunchao Zhang     k = p;
6516394ed5ebSJunchao Zhang   }
6517394ed5ebSJunchao Zhang 
6518394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6519394ed5ebSJunchao Zhang   PetscSF      sf1;
6520394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6521394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6522394ed5ebSJunchao Zhang   PetscInt    *offsets;
6523394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6524394ed5ebSJunchao Zhang 
65259566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6528394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6529394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6530394ed5ebSJunchao Zhang     iremote[k].index = 0;
6531394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
653254c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6533394ed5ebSJunchao Zhang   }
65349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65359566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65369566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65379566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6538e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6539394ed5ebSJunchao Zhang 
6540394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6541394ed5ebSJunchao Zhang   PetscSF sf2;
6542394ed5ebSJunchao Zhang   nroots  = nroots2;
6543394ed5ebSJunchao Zhang   nleaves = nleaves2;
65449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6547394ed5ebSJunchao Zhang   p = 0;
6548394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654954c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6550394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6551394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65526497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6553394ed5ebSJunchao Zhang     }
6554394ed5ebSJunchao Zhang   }
65559566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6556394ed5ebSJunchao Zhang 
6557394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6558394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6559394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6561834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6562834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6563de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6564de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6565834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6566834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6567834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6568834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6569394ed5ebSJunchao Zhang 
65709566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65719566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6572394ed5ebSJunchao Zhang 
6573394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6574394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65759566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6576394ed5ebSJunchao Zhang 
6577651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6578651b1cf9SStefano Zampini   PetscCount *Cperm1;
6579834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6580de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6581651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6582834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6583651b1cf9SStefano Zampini 
6584651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6585651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6586651b1cf9SStefano Zampini   PetscBool hypre;
658717b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6588651b1cf9SStefano Zampini   if (hypre) {
6589651b1cf9SStefano Zampini     PetscInt *minj;
6590651b1cf9SStefano Zampini     PetscBT   hasdiag;
6591651b1cf9SStefano Zampini 
6592651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6593651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65941690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6595651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6596651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6597651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6598651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6599651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6600651b1cf9SStefano Zampini     }
6601651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6602651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6603651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6604651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6605651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6606651b1cf9SStefano Zampini     }
6607651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6608651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6609651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6610651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6611651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6612651b1cf9SStefano Zampini     }
6613651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6614651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6615651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6616651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6617651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6618651b1cf9SStefano Zampini     }
6619651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6620651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6621651b1cf9SStefano Zampini   }
6622651b1cf9SStefano Zampini 
6623651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6624651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6625651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6626651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6627394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6628394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6629394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6630394ed5ebSJunchao Zhang 
6631651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6633651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66349566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6635394ed5ebSJunchao Zhang 
6636394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6637394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6638394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6639394ed5ebSJunchao Zhang 
66409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6644394ed5ebSJunchao Zhang 
6645394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6646158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6647158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6648158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6649158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6650394ed5ebSJunchao Zhang 
66519566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66529566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6653158ec288SJunchao Zhang 
6654158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6655158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6656158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6657158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6658158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6659158ec288SJunchao Zhang 
6660158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6661158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6662158ec288SJunchao Zhang 
6663158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6664158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6665158ec288SJunchao Zhang 
6666158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6667158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6668158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6669158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66709566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66719566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6672e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66739566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6674394ed5ebSJunchao Zhang 
6675158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6676158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6677158ec288SJunchao Zhang 
6678394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6679394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6680394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66839566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6684394ed5ebSJunchao Zhang     Aj = Aj_new;
6685394ed5ebSJunchao Zhang   }
6686394ed5ebSJunchao Zhang 
6687394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6688394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66909566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66919566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6692394ed5ebSJunchao Zhang     Bj = Bj_new;
6693394ed5ebSJunchao Zhang   }
6694394ed5ebSJunchao Zhang 
6695cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6696394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6697cbc6b225SStefano Zampini   MatType          rtype;
6698394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6699cf8ba265SJunchao Zhang   PetscObjectState state;
67009566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
67019566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6702394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
67039371c9d4SSatish Balay   if (cstart) {
67049371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67059371c9d4SSatish Balay   }
6706c508b908SBarry Smith 
67079566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6708c508b908SBarry Smith 
6709c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6710c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67119566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67120da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6713c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6714c508b908SBarry Smith 
6715c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6716c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67179566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67180da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6719c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6720c508b908SBarry Smith 
67219566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67225bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6723cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6724462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6725cbc6b225SStefano Zampini 
6726394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6727394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
67289f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
67299f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
67309f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
67319f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
673217b874c6SStefano Zampini   a->maxnz   = a->nz;
673317b874c6SStefano Zampini   b->maxnz   = b->nz;
6734394ed5ebSJunchao Zhang 
6735cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67369566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67379566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67399566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6740cbc6b225SStefano Zampini 
67412c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67422c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67432c4ab24aSJunchao Zhang   coo->n       = coo_n;
67442c4ab24aSJunchao Zhang   coo->sf      = sf2;
67452c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67462c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67472c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67482c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67492c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67502c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67512c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67522c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67532c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67542c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67552c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67562c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67572c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67582c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67592c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67602c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67612c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67622c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67632c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67642c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67652c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67662c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67672c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67682c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67692c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
677049abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67712c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67722c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6774394ed5ebSJunchao Zhang }
6775394ed5ebSJunchao Zhang 
6776d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6777d71ae5a4SJacob Faibussowitsch {
6778394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6779394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6780394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67812c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67822c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67832c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67842c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67852c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67862c4ab24aSJunchao Zhang   PetscContainer       container;
67872c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6788394ed5ebSJunchao Zhang 
6789394ed5ebSJunchao Zhang   PetscFunctionBegin;
67902c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67912c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67922c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67932c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67942c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67952c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67962c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67972c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67982c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67992c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
68002c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
68012c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
68022c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
68032c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
68042c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
68052c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
68062c4ab24aSJunchao Zhang 
68079566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68089566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6809394ed5ebSJunchao Zhang 
6810394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68112c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6812394ed5ebSJunchao Zhang 
6813394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68142c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6815394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68162c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6817da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6818158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6819158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6820394ed5ebSJunchao Zhang   }
68212c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6822158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6823158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6824158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6825394ed5ebSJunchao Zhang   }
68262c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6827394ed5ebSJunchao Zhang 
6828394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68292c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6830394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6831394ed5ebSJunchao Zhang   }
68322c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6833394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6834394ed5ebSJunchao Zhang   }
68359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6838394ed5ebSJunchao Zhang }
6839394ed5ebSJunchao Zhang 
6840ccd8e176SBarry Smith /*MC
6841ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6842ccd8e176SBarry Smith 
6843ccd8e176SBarry Smith    Options Database Keys:
684411a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6845ccd8e176SBarry Smith 
6846ccd8e176SBarry Smith    Level: beginner
68470cd7f59aSBarry Smith 
68480cd7f59aSBarry Smith    Notes:
68492ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68500cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68510cd7f59aSBarry Smith     in the matrix
68520cd7f59aSBarry Smith 
685311a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
685411a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6855ccd8e176SBarry Smith 
68561cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6857ccd8e176SBarry Smith M*/
6858d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6859d71ae5a4SJacob Faibussowitsch {
6860ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6861ccd8e176SBarry Smith   PetscMPIInt size;
6862ccd8e176SBarry Smith 
6863ccd8e176SBarry Smith   PetscFunctionBegin;
68649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68652205254eSKarl Rupp 
68664dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6867ccd8e176SBarry Smith   B->data       = (void *)b;
6868aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6869ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6870ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6871ccd8e176SBarry Smith   b->size       = size;
68722205254eSKarl Rupp 
68739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6874ccd8e176SBarry Smith 
6875ccd8e176SBarry Smith   /* build cache for off array entries formed */
68769566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68772205254eSKarl Rupp 
6878ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6879f4259b30SLisandro Dalcin   b->colmap      = NULL;
6880f4259b30SLisandro Dalcin   b->garray      = NULL;
6881ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6882ccd8e176SBarry Smith 
6883ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68840298fd71SBarry Smith   b->lvec  = NULL;
68850298fd71SBarry Smith   b->Mvctx = NULL;
6886ccd8e176SBarry Smith 
6887ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6888f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6889f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6890ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6891ccd8e176SBarry Smith 
6892f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68930298fd71SBarry Smith   b->spptr = NULL;
6894f60c3dc2SHong Zhang 
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
69009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6901674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
69029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
69039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
69049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
69059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
69063d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
69079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69083d0639e7SStefano Zampini #endif
6909d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6910d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6911d5e393b6SSuyash Tandon #endif
69123d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69143d0639e7SStefano Zampini #endif
69159779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6917191b95cbSRichard Tran Mills #endif
69189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69225d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69245d7652ecSHong Zhang #endif
6925d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6927d24d4204SJose E. Roman #endif
69289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69303dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69333dad0653Sstefano_zampini #endif
69349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69389566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6940ccd8e176SBarry Smith }
694181824310SBarry Smith 
69425d83a8b1SBarry Smith /*@
694311a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
694403bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
694503bfb495SBarry Smith 
6946d083f849SBarry Smith   Collective
694703bfb495SBarry Smith 
694803bfb495SBarry Smith   Input Parameters:
694903bfb495SBarry Smith + comm - MPI communicator
695011a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
695103bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6952d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69532ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69542ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69552ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6956483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
695704ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
695803bfb495SBarry Smith . a    - matrix values
6959483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69602ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
696103bfb495SBarry Smith - oa   - matrix values
696203bfb495SBarry Smith 
696303bfb495SBarry Smith   Output Parameter:
696403bfb495SBarry Smith . mat - the matrix
696503bfb495SBarry Smith 
696603bfb495SBarry Smith   Level: advanced
696703bfb495SBarry Smith 
696803bfb495SBarry Smith   Notes:
6969f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6970292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
697103bfb495SBarry Smith 
69722ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
697303bfb495SBarry Smith 
69742ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
697503bfb495SBarry Smith 
69767b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69777b55108eSBarry Smith 
6978dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6979dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6980dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6981dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
698211a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6983dca341c0SJed Brown   communication if it is known that only local entries will be set.
698403bfb495SBarry Smith 
69851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6986db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69872b26979fSBarry Smith @*/
6988d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6989d71ae5a4SJacob Faibussowitsch {
699003bfb495SBarry Smith   Mat_MPIAIJ *maij;
699103bfb495SBarry Smith 
699203bfb495SBarry Smith   PetscFunctionBegin;
699308401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6994aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6995aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69969566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69989566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
699903bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
70002205254eSKarl Rupp 
70018d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
700203bfb495SBarry Smith 
70039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
70049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
700503bfb495SBarry Smith 
70069566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
70079566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
700803bfb495SBarry Smith 
70099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70129566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70139566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
701503bfb495SBarry Smith }
701603bfb495SBarry Smith 
70174e84afc0SStefano Zampini typedef struct {
70184e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70194e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70204e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70214e84afc0SStefano Zampini 
70224e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70234e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70244e84afc0SStefano Zampini   PetscScalar *bufa;
70254e84afc0SStefano Zampini   Mat          P_oth;
70264e84afc0SStefano Zampini 
70274e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7028ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70294e84afc0SStefano Zampini 
7030ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70314e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70324e84afc0SStefano Zampini      of the temporary storage */
70334e84afc0SStefano Zampini   PetscBool reusesym;
70344e84afc0SStefano Zampini 
70354e84afc0SStefano Zampini   /* support for COO values insertion */
7036ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7037ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7038ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7039ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7040c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7041c215019aSStefano Zampini   PetscMemType mtype;
70424e84afc0SStefano Zampini 
70434e84afc0SStefano Zampini   /* customization */
70444e84afc0SStefano Zampini   PetscBool abmerge;
7045abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70464e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70474e84afc0SStefano Zampini 
7048ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7049d71ae5a4SJacob Faibussowitsch {
70504e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70514e84afc0SStefano Zampini   PetscInt             i;
70524e84afc0SStefano Zampini 
70534e84afc0SStefano Zampini   PetscFunctionBegin;
70549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70559566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70569566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70579566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70589566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70599566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70609566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
706148a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70639566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70649566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70659566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70669566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70679566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70694e84afc0SStefano Zampini }
70704e84afc0SStefano Zampini 
7071fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7072fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7073fff043a9SJunchao Zhang  */
7074d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7075d71ae5a4SJacob Faibussowitsch {
7076c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7077c215019aSStefano Zampini 
7078c215019aSStefano Zampini   PetscFunctionBegin;
70799566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7080c215019aSStefano Zampini   if (f) {
70819566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7082c215019aSStefano Zampini   } else {
7083c215019aSStefano Zampini     const PetscScalar *vv;
7084c215019aSStefano Zampini 
70859566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7086c215019aSStefano Zampini     if (n && idx) {
7087c215019aSStefano Zampini       PetscScalar    *w  = v;
7088c215019aSStefano Zampini       const PetscInt *oi = idx;
7089c215019aSStefano Zampini       PetscInt        j;
7090c215019aSStefano Zampini 
7091c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7092c215019aSStefano Zampini     } else {
70939566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7094c215019aSStefano Zampini     }
70959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7096c215019aSStefano Zampini   }
70973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7098c215019aSStefano Zampini }
7099c215019aSStefano Zampini 
7100d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7101d71ae5a4SJacob Faibussowitsch {
71024e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
71034e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
71044e84afc0SStefano Zampini 
71054e84afc0SStefano Zampini   PetscFunctionBegin;
71064e84afc0SStefano Zampini   MatCheckProduct(C, 1);
710728b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71084e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71094e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
711048a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
711148a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71124e84afc0SStefano Zampini   }
71134e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7114abb89eb1SStefano Zampini 
7115abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
711608401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71179566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7118abb89eb1SStefano Zampini   }
71194e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71206497c311SBarry Smith     PetscInt noff;
71214e84afc0SStefano Zampini 
71226497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
71234e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71244e84afc0SStefano Zampini     if (noff) {
71256497c311SBarry Smith       PetscInt nown;
7126c215019aSStefano Zampini 
71276497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
71289566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71299566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71304e84afc0SStefano Zampini       n_o += noff;
71314e84afc0SStefano Zampini       n_d += nown;
71324e84afc0SStefano Zampini     } else {
7133c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7134c215019aSStefano Zampini 
71359566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71364e84afc0SStefano Zampini       n_d += mm->nz;
71374e84afc0SStefano Zampini     }
71384e84afc0SStefano Zampini   }
7139c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71409566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71419566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71424e84afc0SStefano Zampini   }
71439566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71454e84afc0SStefano Zampini }
71464e84afc0SStefano Zampini 
71474e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71484e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7149d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7150d71ae5a4SJacob Faibussowitsch {
71514e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7152ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71534e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71544e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71554e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71564e84afc0SStefano Zampini   IS                     glob      = NULL;
71574e84afc0SStefano Zampini   const char            *prefix;
71584e84afc0SStefano Zampini   char                   pprefix[256];
71594e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
716082a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
716182a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7162ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7163ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7164ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7165ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7166ddea5d60SJunchao Zhang 
71674e84afc0SStefano Zampini   MatProductType ptype;
7168d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71694e84afc0SStefano Zampini   PetscMPIInt    size;
71704e84afc0SStefano Zampini 
71714e84afc0SStefano Zampini   PetscFunctionBegin;
71724e84afc0SStefano Zampini   MatCheckProduct(C, 1);
717328b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71744e84afc0SStefano Zampini   ptype = product->type;
7175b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7176fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7177fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7178fa046f9fSJunchao Zhang   }
71794e84afc0SStefano Zampini   switch (ptype) {
71804e84afc0SStefano Zampini   case MATPRODUCT_AB:
71814e84afc0SStefano Zampini     A          = product->A;
71824e84afc0SStefano Zampini     P          = product->B;
71834e84afc0SStefano Zampini     m          = A->rmap->n;
71844e84afc0SStefano Zampini     n          = P->cmap->n;
71854e84afc0SStefano Zampini     M          = A->rmap->N;
71864e84afc0SStefano Zampini     N          = P->cmap->N;
7187ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71884e84afc0SStefano Zampini     break;
71894e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71904e84afc0SStefano Zampini     P          = product->A;
71914e84afc0SStefano Zampini     A          = product->B;
71924e84afc0SStefano Zampini     m          = P->cmap->n;
71934e84afc0SStefano Zampini     n          = A->cmap->n;
71944e84afc0SStefano Zampini     M          = P->cmap->N;
71954e84afc0SStefano Zampini     N          = A->cmap->N;
71964e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71974e84afc0SStefano Zampini     break;
71984e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71994e84afc0SStefano Zampini     A          = product->A;
72004e84afc0SStefano Zampini     P          = product->B;
72014e84afc0SStefano Zampini     m          = P->cmap->n;
72024e84afc0SStefano Zampini     n          = P->cmap->n;
72034e84afc0SStefano Zampini     M          = P->cmap->N;
72044e84afc0SStefano Zampini     N          = P->cmap->N;
72054e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72064e84afc0SStefano Zampini     break;
7207d71ae5a4SJacob Faibussowitsch   default:
7208d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
72094e84afc0SStefano Zampini   }
72109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72114e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72124e84afc0SStefano Zampini 
72134e84afc0SStefano Zampini   /* defaults */
72144e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72154e84afc0SStefano Zampini     mp[i]    = NULL;
72164e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72174e84afc0SStefano Zampini     rmapt[i] = -1;
72184e84afc0SStefano Zampini     cmapt[i] = -1;
72194e84afc0SStefano Zampini     rmapa[i] = NULL;
72204e84afc0SStefano Zampini     cmapa[i] = NULL;
72214e84afc0SStefano Zampini   }
72224e84afc0SStefano Zampini 
72234e84afc0SStefano Zampini   /* customization */
72249566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72254e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72264e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72274e84afc0SStefano Zampini     if (product->api_user) {
7228d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72299566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72309566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7231d0609cedSBarry Smith       PetscOptionsEnd();
72324e84afc0SStefano Zampini     } else {
7233d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72349566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72359566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7236d0609cedSBarry Smith       PetscOptionsEnd();
7237abb89eb1SStefano Zampini     }
7238abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7239abb89eb1SStefano Zampini     if (product->api_user) {
7240d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72419566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7242d0609cedSBarry Smith       PetscOptionsEnd();
7243abb89eb1SStefano Zampini     } else {
7244d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72459566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7246d0609cedSBarry Smith       PetscOptionsEnd();
72474e84afc0SStefano Zampini     }
72484e84afc0SStefano Zampini   }
72494e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72504e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72519566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72549566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72559566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7256ddea5d60SJunchao Zhang 
7257ddea5d60SJunchao Zhang   cp = 0;
72584e84afc0SStefano Zampini   switch (ptype) {
72594e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72609566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72614e84afc0SStefano Zampini 
7262ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7263ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72644e84afc0SStefano Zampini       /* P is product->B */
72659566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72669566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72679566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72689566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72699566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72709566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72719566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72724e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72739566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72749566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72759566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72764e84afc0SStefano Zampini       rmapt[cp] = 1;
72774e84afc0SStefano Zampini       cmapt[cp] = 2;
72784e84afc0SStefano Zampini       cmapa[cp] = globidx;
72794e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72804e84afc0SStefano Zampini       cp++;
7281ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72829566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72839566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72849566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72859566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72869566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72879566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72884e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72899566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72909566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72914e84afc0SStefano Zampini       rmapt[cp] = 1;
72924e84afc0SStefano Zampini       cmapt[cp] = 1;
72934e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72944e84afc0SStefano Zampini       cp++;
72959566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72969566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72979566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72989566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72999566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73009566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73014e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73029566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73039566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73044e84afc0SStefano Zampini       rmapt[cp] = 1;
73054e84afc0SStefano Zampini       cmapt[cp] = 2;
73064e84afc0SStefano Zampini       cmapa[cp] = p->garray;
73074e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73084e84afc0SStefano Zampini       cp++;
73094e84afc0SStefano Zampini     }
7310ddea5d60SJunchao Zhang 
7311ddea5d60SJunchao Zhang     /* A_off * P_other */
73124e84afc0SStefano Zampini     if (mmdata->P_oth) {
73139566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73149566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7315f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73169566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73179566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73189566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73199566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73209566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73219566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73229566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73234e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73249566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73259566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73264e84afc0SStefano Zampini       rmapt[cp] = 1;
73274e84afc0SStefano Zampini       cmapt[cp] = 2;
73284e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73294e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73304e84afc0SStefano Zampini       cp++;
73314e84afc0SStefano Zampini     }
73324e84afc0SStefano Zampini     break;
7333ddea5d60SJunchao Zhang 
73344e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73354e84afc0SStefano Zampini     /* A is product->B */
73369566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7337ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73389566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73399566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73409566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73419566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73429566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73439566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73444e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73459566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73469566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73479566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73484e84afc0SStefano Zampini       rmapt[cp] = 2;
73494e84afc0SStefano Zampini       rmapa[cp] = globidx;
73504e84afc0SStefano Zampini       cmapt[cp] = 2;
73514e84afc0SStefano Zampini       cmapa[cp] = globidx;
73524e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73534e84afc0SStefano Zampini       cp++;
73544e84afc0SStefano Zampini     } else {
73559566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73569566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73589566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73599566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73609566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73614e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73629566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73639566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73649566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73654e84afc0SStefano Zampini       rmapt[cp] = 1;
73664e84afc0SStefano Zampini       cmapt[cp] = 2;
73674e84afc0SStefano Zampini       cmapa[cp] = globidx;
73684e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73694e84afc0SStefano Zampini       cp++;
73709566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73719566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73729566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73739566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73749566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73759566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73764e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73779566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73789566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73794e84afc0SStefano Zampini       rmapt[cp] = 2;
73804e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73814e84afc0SStefano Zampini       cmapt[cp] = 2;
73824e84afc0SStefano Zampini       cmapa[cp] = globidx;
73834e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73844e84afc0SStefano Zampini       cp++;
73854e84afc0SStefano Zampini     }
73864e84afc0SStefano Zampini     break;
73874e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73889566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73894e84afc0SStefano Zampini     /* P is product->B */
73909566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73919566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73929566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73939566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73949566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73959566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73969566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73974e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73989566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73999566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74009566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
74014e84afc0SStefano Zampini     rmapt[cp] = 2;
74024e84afc0SStefano Zampini     rmapa[cp] = globidx;
74034e84afc0SStefano Zampini     cmapt[cp] = 2;
74044e84afc0SStefano Zampini     cmapa[cp] = globidx;
74054e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
74064e84afc0SStefano Zampini     cp++;
74074e84afc0SStefano Zampini     if (mmdata->P_oth) {
74089566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
74099566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7410f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74119566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74129566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74139566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74149566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74159566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74169566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74179566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74184e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74199566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74209566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74214e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74224e84afc0SStefano Zampini       cp++;
74239566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74249566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74259566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74269566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74279566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74289566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74294e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74309566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74319566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74324e84afc0SStefano Zampini       rmapt[cp] = 2;
74334e84afc0SStefano Zampini       rmapa[cp] = globidx;
74344e84afc0SStefano Zampini       cmapt[cp] = 2;
74354e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74364e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74374e84afc0SStefano Zampini       cp++;
74384e84afc0SStefano Zampini     }
74394e84afc0SStefano Zampini     break;
7440d71ae5a4SJacob Faibussowitsch   default:
7441d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74424e84afc0SStefano Zampini   }
74434e84afc0SStefano Zampini   /* sanity check */
74449371c9d4SSatish Balay   if (size > 1)
74459371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74464e84afc0SStefano Zampini 
74479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7448ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7449ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7450ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7451ddea5d60SJunchao Zhang   }
74524e84afc0SStefano Zampini   mmdata->cp             = cp;
74534e84afc0SStefano Zampini   C->product->data       = mmdata;
74544e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74554e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74564e84afc0SStefano Zampini 
7457c215019aSStefano Zampini   /* memory type */
7458c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74599566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7460d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74619566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7462c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7463d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74643214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7465c215019aSStefano Zampini 
74664e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7467ddea5d60SJunchao Zhang 
7468ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7469ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7470ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7471ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7472ddea5d60SJunchao Zhang   */
74734e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74744e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74754e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7476ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74774e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74784e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74794e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74804e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74814e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74824e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74834e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74844e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7485ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7486ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74874e84afc0SStefano Zampini       }
74884e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74894e84afc0SStefano Zampini   }
7490ddea5d60SJunchao Zhang 
7491ddea5d60SJunchao Zhang   /*
7492ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7493ddea5d60SJunchao Zhang 
7494ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7495ddea5d60SJunchao Zhang 
7496d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7497ddea5d60SJunchao Zhang 
7498ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7499ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7500ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7501ddea5d60SJunchao Zhang 
7502ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7503da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7504ddea5d60SJunchao Zhang   */
75059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
75069566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7507ddea5d60SJunchao Zhang 
7508ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7509ddea5d60SJunchao Zhang   if (hasoffproc) {
75104e84afc0SStefano Zampini     PetscSF  msf;
75114e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75124e84afc0SStefano Zampini 
75139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7516ddea5d60SJunchao Zhang 
75174e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75184e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75194e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75204e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7521ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75224e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75234e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75244e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75254e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75264e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75274e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75284e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75294e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75304e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75314e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75324e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75334e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75344e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7535ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75364e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75374e84afc0SStefano Zampini               *coi++    = gr;
75384e84afc0SStefano Zampini               *idxoff++ = j;
75394e84afc0SStefano Zampini             }
75404e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75414e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75424e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75434e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75444e84afc0SStefano Zampini             } else { /* offdiag */
75454e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75464e84afc0SStefano Zampini             }
75474e84afc0SStefano Zampini             ncoo_o += nz;
7548ddea5d60SJunchao Zhang           } else { /* this is a local row */
75494e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75504e84afc0SStefano Zampini           }
75514e84afc0SStefano Zampini         }
75524e84afc0SStefano Zampini       }
75534e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75544e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75554e84afc0SStefano Zampini     }
75564e84afc0SStefano Zampini 
75579566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75586497c311SBarry Smith     PetscInt incoo_o;
75596497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75606497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75619566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75629566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75634e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75659566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75669566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75679566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75689566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75699566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7570ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75719566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75724e84afc0SStefano Zampini     coo_i = coo_i2;
75734e84afc0SStefano Zampini     coo_j = coo_j2;
75744e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75754e84afc0SStefano Zampini     ncoo = ncoo_d;
75769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7577c215019aSStefano Zampini 
75789566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75799566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75809566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75814e84afc0SStefano Zampini   }
7582c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75834e84afc0SStefano Zampini 
7584ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75854e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75864e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75874e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75884e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75894e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75904e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75914e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75924e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75934e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75944e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75954e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75964e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75974e84afc0SStefano Zampini 
75984e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7599ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7600ddea5d60SJunchao Zhang       /* fill coo_i */
76014e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76024e84afc0SStefano Zampini         const PetscInt gr = i + rs;
76034e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
76044e84afc0SStefano Zampini       }
7605ddea5d60SJunchao Zhang       /* fill coo_j */
7606ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
76079566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7608ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7609ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7610ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
76114e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76124e84afc0SStefano Zampini       }
76134e84afc0SStefano Zampini       ncoo_d += mm->nz;
7614ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76154e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76164e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76174e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76184e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7619ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76204e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7621ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76224e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76234e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76244e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7625ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76264e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76274e84afc0SStefano Zampini           }
76284e84afc0SStefano Zampini           ncoo_d += nz;
76294e84afc0SStefano Zampini         }
76304e84afc0SStefano Zampini       }
76314e84afc0SStefano Zampini     }
76324e84afc0SStefano Zampini   }
763348a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76349566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
763548a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76369566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7637ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76389566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76394e84afc0SStefano Zampini 
764039cfb508SMark Adams   /* set block sizes */
764139cfb508SMark Adams   A = product->A;
764239cfb508SMark Adams   P = product->B;
764339cfb508SMark Adams   switch (ptype) {
764439cfb508SMark Adams   case MATPRODUCT_PtAP:
764558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
764639cfb508SMark Adams     break;
764739cfb508SMark Adams   case MATPRODUCT_RARt:
764858b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
764939cfb508SMark Adams     break;
765039cfb508SMark Adams   case MATPRODUCT_ABC:
765139cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
765239cfb508SMark Adams     break;
765339cfb508SMark Adams   case MATPRODUCT_AB:
765439cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
765539cfb508SMark Adams     break;
765639cfb508SMark Adams   case MATPRODUCT_AtB:
765758b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
765839cfb508SMark Adams     break;
765939cfb508SMark Adams   case MATPRODUCT_ABt:
766058b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
766139cfb508SMark Adams     break;
766239cfb508SMark Adams   default:
766339cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
766439cfb508SMark Adams   }
766539cfb508SMark Adams 
76664e84afc0SStefano Zampini   /* preallocate with COO data */
76679566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76704e84afc0SStefano Zampini }
76714e84afc0SStefano Zampini 
7672d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7673d71ae5a4SJacob Faibussowitsch {
76744e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76754e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76764e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7677abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76784e84afc0SStefano Zampini #else
76794e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76804e84afc0SStefano Zampini #endif
76814e84afc0SStefano Zampini 
76824e84afc0SStefano Zampini   PetscFunctionBegin;
76834e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76844e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
768548a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
768665e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7687abb89eb1SStefano Zampini     switch (product->type) {
7688abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7689abb89eb1SStefano Zampini       if (product->api_user) {
7690d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76919566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7692d0609cedSBarry Smith         PetscOptionsEnd();
7693abb89eb1SStefano Zampini       } else {
7694d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76959566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7696d0609cedSBarry Smith         PetscOptionsEnd();
7697abb89eb1SStefano Zampini       }
7698abb89eb1SStefano Zampini       break;
7699abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7700abb89eb1SStefano Zampini       if (product->api_user) {
7701d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
77029566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7703d0609cedSBarry Smith         PetscOptionsEnd();
7704abb89eb1SStefano Zampini       } else {
7705d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
77069566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7707d0609cedSBarry Smith         PetscOptionsEnd();
7708abb89eb1SStefano Zampini       }
7709abb89eb1SStefano Zampini       break;
7710abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7711abb89eb1SStefano Zampini       if (product->api_user) {
7712d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
77139566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7714d0609cedSBarry Smith         PetscOptionsEnd();
7715abb89eb1SStefano Zampini       } else {
7716d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
77179566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7718d0609cedSBarry Smith         PetscOptionsEnd();
7719abb89eb1SStefano Zampini       }
7720abb89eb1SStefano Zampini       break;
7721d71ae5a4SJacob Faibussowitsch     default:
7722d71ae5a4SJacob Faibussowitsch       break;
7723abb89eb1SStefano Zampini     }
7724abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7725abb89eb1SStefano Zampini   }
77264e84afc0SStefano Zampini #endif
77274e84afc0SStefano Zampini   if (match) {
77284e84afc0SStefano Zampini     switch (product->type) {
77294e84afc0SStefano Zampini     case MATPRODUCT_AB:
77304e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7731d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7732d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7733d71ae5a4SJacob Faibussowitsch       break;
7734d71ae5a4SJacob Faibussowitsch     default:
7735d71ae5a4SJacob Faibussowitsch       break;
77364e84afc0SStefano Zampini     }
77374e84afc0SStefano Zampini   }
77384e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77399566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
774181824310SBarry Smith }
774298921bdaSJacob Faibussowitsch 
774398921bdaSJacob Faibussowitsch /*
774472833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
774572833a62Smarkadams4 
774672833a62Smarkadams4    n - the number of block indices in cc[]
774772833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
774872833a62Smarkadams4 */
7749d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7750d71ae5a4SJacob Faibussowitsch {
775172833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
775272833a62Smarkadams4   const PetscInt *idx;
775372833a62Smarkadams4 
775472833a62Smarkadams4   PetscFunctionBegin;
775572833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
775672833a62Smarkadams4   if (nidx) {
775772833a62Smarkadams4     cnt     = 0;
775872833a62Smarkadams4     cc[cnt] = idx[0] / bs;
775972833a62Smarkadams4     for (j = 1; j < nidx; j++) {
776072833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
776172833a62Smarkadams4     }
776272833a62Smarkadams4   }
776372833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
776472833a62Smarkadams4   *n = cnt + 1;
77653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
776672833a62Smarkadams4 }
776772833a62Smarkadams4 
776872833a62Smarkadams4 /*
776972833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
777072833a62Smarkadams4 
777172833a62Smarkadams4     ncollapsed - the number of block indices
777272833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
777372833a62Smarkadams4 */
7774d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7775d71ae5a4SJacob Faibussowitsch {
777672833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
777772833a62Smarkadams4 
777872833a62Smarkadams4   PetscFunctionBegin;
777972833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
778072833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
778172833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
778272833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77839371c9d4SSatish Balay     cprevtmp = cprev;
77849371c9d4SSatish Balay     cprev    = merged;
77859371c9d4SSatish Balay     merged   = cprevtmp;
778672833a62Smarkadams4   }
778772833a62Smarkadams4   *ncollapsed = nprev;
778872833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
779072833a62Smarkadams4 }
779172833a62Smarkadams4 
77922d776b49SBarry Smith /*
779372833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
779472833a62Smarkadams4 
779572833a62Smarkadams4  Input Parameter:
779672833a62Smarkadams4  . Amat - matrix
779772833a62Smarkadams4  - symmetrize - make the result symmetric
779872833a62Smarkadams4  + scale - scale with diagonal
779972833a62Smarkadams4 
780072833a62Smarkadams4  Output Parameter:
780172833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
780272833a62Smarkadams4 
780372833a62Smarkadams4 */
7804e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7805d71ae5a4SJacob Faibussowitsch {
780672833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
780772833a62Smarkadams4   MPI_Comm  comm;
780872833a62Smarkadams4   Mat       Gmat;
780972833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
781072833a62Smarkadams4   Mat       a, b, c;
781172833a62Smarkadams4   MatType   jtype;
781272833a62Smarkadams4 
781372833a62Smarkadams4   PetscFunctionBegin;
781472833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
781572833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
781672833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
781772833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
781872833a62Smarkadams4   nloc = (Iend - Istart) / bs;
781972833a62Smarkadams4 
782072833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
782172833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
782272833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
782372833a62Smarkadams4 
782472833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
782572833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
782672833a62Smarkadams4      implementation */
782772833a62Smarkadams4   if (bs > 1) {
782872833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
782972833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
783072833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
783172833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
783272833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
783372833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
783472833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
78352cf69117Smarkadams4       MatScalar *aa, val, *AA;
78362cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
78376497c311SBarry Smith 
78389371c9d4SSatish Balay       if (isseqaij) {
78399371c9d4SSatish Balay         a = Amat;
78409371c9d4SSatish Balay         b = NULL;
78419371c9d4SSatish Balay       } else {
784272833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78439371c9d4SSatish Balay         a             = d->A;
78449371c9d4SSatish Balay         b             = d->B;
784572833a62Smarkadams4       }
784672833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
784732603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
784872833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78492cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
785059ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
78516497c311SBarry Smith 
785259ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
785359ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
785459ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
785559ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
785672833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
785759ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
785859ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
785959ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
786059ee9f9fSPierre Jolivet             else {
786159ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
786259ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
786359ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
786472833a62Smarkadams4               }
786559ee9f9fSPierre Jolivet             }
786659ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
786759ee9f9fSPierre Jolivet           }
786859ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
786972833a62Smarkadams4           if (!ok) {
787072833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
787159ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
787272833a62Smarkadams4             goto old_bs;
787372833a62Smarkadams4           }
787472833a62Smarkadams4         }
787572833a62Smarkadams4       }
787672833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
787772833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
787872833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78792cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
788072833a62Smarkadams4       // diag
788172833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
788272833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78836497c311SBarry Smith 
788472833a62Smarkadams4         ai = aseq->i;
788572833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
788672833a62Smarkadams4         aj = aseq->j + ai[brow];
78876497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
788872833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
788972833a62Smarkadams4           val        = 0;
7890e02fb3cdSMark Adams           if (index_size == 0) {
78916497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
789272833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78936497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
789472833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
789572833a62Smarkadams4               }
789672833a62Smarkadams4             }
7897e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78986497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78996497c311SBarry Smith               PetscInt ii = index[iii];
7900e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
79016497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
79026497c311SBarry Smith                 PetscInt jj = index[jjj];
7903cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7904e02fb3cdSMark Adams               }
7905e02fb3cdSMark Adams             }
7906e02fb3cdSMark Adams           }
7907835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
790872833a62Smarkadams4           AA[k / bs] = val;
790972833a62Smarkadams4         }
791072833a62Smarkadams4         grow = Istart / bs + brow / bs;
791166521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
791272833a62Smarkadams4       }
791372833a62Smarkadams4       // off-diag
791472833a62Smarkadams4       if (ismpiaij) {
791572833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
791672833a62Smarkadams4         const PetscScalar *vals;
791772833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
79186497c311SBarry Smith 
791972833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
792072833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
792172833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
79226497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
792359ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
792472833a62Smarkadams4             AA[k / bs] = 0;
792572833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
792672833a62Smarkadams4           }
792772833a62Smarkadams4           nc = ncols / bs;
792872833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7929e02fb3cdSMark Adams           if (index_size == 0) {
79306497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
793172833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79326497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79336497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7934835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
793572833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
793672833a62Smarkadams4                 }
793772833a62Smarkadams4               }
793872833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
793972833a62Smarkadams4             }
7940e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79416497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79426497c311SBarry Smith               PetscInt ii = index[iii];
7943e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79446497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79456497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
79466497c311SBarry Smith                   PetscInt jj = index[jjj];
7947e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7948e02fb3cdSMark Adams                 }
7949e02fb3cdSMark Adams               }
7950e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7951e02fb3cdSMark Adams             }
7952e02fb3cdSMark Adams           }
795372833a62Smarkadams4           grow = Istart / bs + brow / bs;
795466521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
795572833a62Smarkadams4         }
795672833a62Smarkadams4       }
795772833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
795872833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79592cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
796072833a62Smarkadams4     } else {
796172833a62Smarkadams4       const PetscScalar *vals;
796272833a62Smarkadams4       const PetscInt    *idx;
796372833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
796472833a62Smarkadams4     old_bs:
796572833a62Smarkadams4       /*
796672833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
796772833a62Smarkadams4        */
796872833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
796932603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
797072833a62Smarkadams4       if (isseqaij) {
797172833a62Smarkadams4         PetscInt max_d_nnz;
79726497c311SBarry Smith 
797372833a62Smarkadams4         /*
797472833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
797572833a62Smarkadams4          */
797672833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
797772833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
797872833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
797948a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
798072833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
798172833a62Smarkadams4       } else if (ismpiaij) {
798272833a62Smarkadams4         Mat             Daij, Oaij;
798372833a62Smarkadams4         const PetscInt *garray;
798472833a62Smarkadams4         PetscInt        max_d_nnz;
79856497c311SBarry Smith 
798672833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
798772833a62Smarkadams4         /*
798872833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
798972833a62Smarkadams4          */
799072833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
799172833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
799272833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
799348a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
799472833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
799572833a62Smarkadams4         /*
799672833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
799772833a62Smarkadams4          */
799872833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
799972833a62Smarkadams4           o_nnz[jj] = 0;
800072833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
800172833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
800272833a62Smarkadams4             o_nnz[jj] += ncols;
800372833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
800472833a62Smarkadams4           }
800572833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
800672833a62Smarkadams4         }
800772833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
800872833a62Smarkadams4       /* get scalar copy (norms) of matrix */
800972833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
801072833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
801172833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
801272833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
801372833a62Smarkadams4         PetscInt dest_row = Ii / bs;
80146497c311SBarry Smith 
801572833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
801672833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
801772833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
801872833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
80196497c311SBarry Smith 
802072833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
802172833a62Smarkadams4         }
802272833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
802372833a62Smarkadams4       }
802472833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
802572833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
802672833a62Smarkadams4     }
802772833a62Smarkadams4   } else {
80282d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
80292d776b49SBarry Smith     else {
80302d776b49SBarry Smith       Gmat = Amat;
80312d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
80322d776b49SBarry Smith     }
80339371c9d4SSatish Balay     if (isseqaij) {
80349371c9d4SSatish Balay       a = Gmat;
80359371c9d4SSatish Balay       b = NULL;
80369371c9d4SSatish Balay     } else {
803772833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
80389371c9d4SSatish Balay       a             = d->A;
80399371c9d4SSatish Balay       b             = d->B;
804072833a62Smarkadams4     }
80412d776b49SBarry Smith     if (filter >= 0 || scale) {
80422d776b49SBarry Smith       /* take absolute value of each entry */
804372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
804472833a62Smarkadams4         MatInfo      info;
804572833a62Smarkadams4         PetscScalar *avals;
80466497c311SBarry Smith 
804772833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
804872833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
804972833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
805072833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
805172833a62Smarkadams4       }
805272833a62Smarkadams4     }
80532d776b49SBarry Smith   }
805472833a62Smarkadams4   if (symmetrize) {
8055b94d7dedSBarry Smith     PetscBool isset, issym;
80566497c311SBarry Smith 
8057b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8058b94d7dedSBarry Smith     if (!isset || !issym) {
805972833a62Smarkadams4       Mat matTrans;
80606497c311SBarry Smith 
806172833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80621fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
806372833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
806472833a62Smarkadams4     }
806572833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80662d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
806772833a62Smarkadams4   if (scale) {
806872833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
806972833a62Smarkadams4     Vec diag;
80706497c311SBarry Smith 
807172833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
807272833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
807372833a62Smarkadams4     PetscCall(VecReciprocal(diag));
807472833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
807572833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
807672833a62Smarkadams4     PetscCall(VecDestroy(&diag));
807772833a62Smarkadams4   }
807872833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80792d776b49SBarry Smith   if (filter >= 0) {
80802ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80812ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80822d776b49SBarry Smith   }
808372833a62Smarkadams4   *a_Gmat = Gmat;
80843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
808572833a62Smarkadams4 }
808672833a62Smarkadams4 
808772833a62Smarkadams4 /*
808898921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
808998921bdaSJacob Faibussowitsch */
809098921bdaSJacob Faibussowitsch 
809198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80929566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80939566063dSJacob Faibussowitsch #undef PetscCall
80949371c9d4SSatish Balay #define PetscCall(...) \
80959371c9d4SSatish Balay   do { \
80965f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
809798921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
809898921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
809998921bdaSJacob Faibussowitsch       return; \
810098921bdaSJacob Faibussowitsch     } \
810198921bdaSJacob Faibussowitsch   } while (0)
810298921bdaSJacob Faibussowitsch 
810398921bdaSJacob Faibussowitsch #undef SETERRQ
81049371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
81059371c9d4SSatish Balay   do { \
810698921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
810798921bdaSJacob Faibussowitsch     return; \
810898921bdaSJacob Faibussowitsch   } while (0)
810998921bdaSJacob Faibussowitsch 
811098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
811198921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
811298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
811398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
811498921bdaSJacob Faibussowitsch #else
811598921bdaSJacob Faibussowitsch #endif
8116d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8117d71ae5a4SJacob Faibussowitsch {
811898921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
811998921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
812098921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
812198921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
812298921bdaSJacob Faibussowitsch   PetscScalar value;
812398921bdaSJacob Faibussowitsch 
812498921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
812598921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
81265f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
812798921bdaSJacob Faibussowitsch   {
812898921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
812998921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
813098921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
813198921bdaSJacob Faibussowitsch 
813298921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
813398921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
813498921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
813598921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
813698921bdaSJacob Faibussowitsch     MatScalar  *aa;
8137f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
813898921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
813998921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
814098921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
814198921bdaSJacob Faibussowitsch     MatScalar  *ba;
814298921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
814398921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
814498921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
814598921bdaSJacob Faibussowitsch 
814698921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
814798921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
814898921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
814998921bdaSJacob Faibussowitsch 
815098921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81519566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81529566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
815398921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
815498921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81556bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
815698921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
815798921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
815898921bdaSJacob Faibussowitsch         lastcol1 = -1;
815998921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
816098921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
816198921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
816298921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
816398921bdaSJacob Faibussowitsch         low1     = 0;
816498921bdaSJacob Faibussowitsch         high1    = nrow1;
816598921bdaSJacob Faibussowitsch         lastcol2 = -1;
816698921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
816798921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
816898921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
816998921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
817098921bdaSJacob Faibussowitsch         low2     = 0;
817198921bdaSJacob Faibussowitsch         high2    = nrow2;
817298921bdaSJacob Faibussowitsch 
817398921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
817498921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
817598921bdaSJacob Faibussowitsch           else value = v[i + j * m];
817698921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
817798921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
817898921bdaSJacob Faibussowitsch             col = in[j] - cstart;
817998921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
818098921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
818198921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
818263a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
818398921bdaSJacob Faibussowitsch           } else {
818498921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
818548a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
818698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8187eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
818898921bdaSJacob Faibussowitsch               col--;
818998921bdaSJacob Faibussowitsch #else
819098921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
819198921bdaSJacob Faibussowitsch #endif
8192f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8193eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
819498921bdaSJacob Faibussowitsch                 col = in[j];
819598921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
819698921bdaSJacob Faibussowitsch                 B        = aij->B;
819798921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81989371c9d4SSatish Balay                 bimax    = b->imax;
81999371c9d4SSatish Balay                 bi       = b->i;
82009371c9d4SSatish Balay                 bilen    = b->ilen;
82019371c9d4SSatish Balay                 bj       = b->j;
820298921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
820398921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
820498921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
820598921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
820698921bdaSJacob Faibussowitsch                 low2     = 0;
820798921bdaSJacob Faibussowitsch                 high2    = nrow2;
820898921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
820998921bdaSJacob Faibussowitsch                 ba       = b->a;
821098921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
821198921bdaSJacob Faibussowitsch               }
821298921bdaSJacob Faibussowitsch             } else col = in[j];
821398921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
821498921bdaSJacob Faibussowitsch           }
821598921bdaSJacob Faibussowitsch         }
821698921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
821798921bdaSJacob Faibussowitsch         if (roworiented) {
82189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
821998921bdaSJacob Faibussowitsch         } else {
82209566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
822198921bdaSJacob Faibussowitsch         }
822298921bdaSJacob Faibussowitsch       }
822398921bdaSJacob Faibussowitsch     }
82249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
82259566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
822698921bdaSJacob Faibussowitsch   }
822798921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
822898921bdaSJacob Faibussowitsch }
822972833a62Smarkadams4 
823098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
823198921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
823298921bdaSJacob Faibussowitsch  * original definitions */
82339566063dSJacob Faibussowitsch #undef PetscCall
823498921bdaSJacob Faibussowitsch #undef SETERRQ
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