xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision b6971eaeabe91bae028772bab3157cdc0eb03a76)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
167f74ef234SStefano Zampini }
168f74ef234SStefano Zampini 
169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
170d71ae5a4SJacob Faibussowitsch {
17126bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17226bda2c4Sstefano_zampini 
17326bda2c4Sstefano_zampini   PetscFunctionBegin;
17446533700Sstefano_zampini   if (mat->A) {
1759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17746533700Sstefano_zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17926bda2c4Sstefano_zampini }
18026bda2c4Sstefano_zampini 
181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
182d71ae5a4SJacob Faibussowitsch {
18327d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18427d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18627d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
187ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18827d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
18927d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19027d4218bSShri Abhyankar 
19127d4218bSShri Abhyankar   PetscFunctionBegin;
192f4259b30SLisandro Dalcin   *keptrows = NULL;
193ce496241SStefano Zampini 
19427d4218bSShri Abhyankar   ia = a->i;
19527d4218bSShri Abhyankar   ib = b->i;
1969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19827d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
19927d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20027d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20127d4218bSShri Abhyankar     if (!na && !nb) {
20227d4218bSShri Abhyankar       cnt++;
20327d4218bSShri Abhyankar       goto ok1;
20427d4218bSShri Abhyankar     }
205ce496241SStefano Zampini     aa = aav + ia[i];
20627d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20727d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20827d4218bSShri Abhyankar     }
2098e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21027d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21127d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21227d4218bSShri Abhyankar     }
21327d4218bSShri Abhyankar     cnt++;
21427d4218bSShri Abhyankar   ok1:;
21527d4218bSShri Abhyankar   }
2161c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
217ce496241SStefano Zampini   if (!n0rows) {
2189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
221ce496241SStefano Zampini   }
2229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22327d4218bSShri Abhyankar   cnt = 0;
22427d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22527d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22627d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22727d4218bSShri Abhyankar     if (!na && !nb) continue;
228ce496241SStefano Zampini     aa = aav + ia[i];
22927d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23027d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23127d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23227d4218bSShri Abhyankar         goto ok2;
23327d4218bSShri Abhyankar       }
23427d4218bSShri Abhyankar     }
2358e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23627d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23727d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23827d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23927d4218bSShri Abhyankar         goto ok2;
24027d4218bSShri Abhyankar       }
24127d4218bSShri Abhyankar     }
24227d4218bSShri Abhyankar   ok2:;
24327d4218bSShri Abhyankar   }
2449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24827d4218bSShri Abhyankar }
24927d4218bSShri Abhyankar 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
251d71ae5a4SJacob Faibussowitsch {
25299e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25394342113SStefano Zampini   PetscBool   cong;
25499e65526SBarry Smith 
25599e65526SBarry Smith   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25794342113SStefano Zampini   if (Y->assembled && cong) {
2589566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
25999e65526SBarry Smith   } else {
2609566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26199e65526SBarry Smith   }
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26399e65526SBarry Smith }
26499e65526SBarry Smith 
265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
266d71ae5a4SJacob Faibussowitsch {
267f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
268f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
269f1f41ecbSJed Brown 
270f1f41ecbSJed Brown   PetscFunctionBegin;
2710298fd71SBarry Smith   *zrows = NULL;
2729566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
274f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2759566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277f1f41ecbSJed Brown }
278f1f41ecbSJed Brown 
279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
280d71ae5a4SJacob Faibussowitsch {
2810716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
282a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2830716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2840716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2850716a85fSBarry Smith   PetscReal         *work;
286ce496241SStefano Zampini   const PetscScalar *dummy;
2870716a85fSBarry Smith 
2880716a85fSBarry Smith   PetscFunctionBegin;
2899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
295857cbf51SRichard Tran Mills   if (type == NORM_2) {
296ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
297ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
298857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
299ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
300ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
301857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
302ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
303ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
304857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
305ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
306ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
307857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
308ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
309ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
310857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
311857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3121c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3130716a85fSBarry Smith   } else {
3141c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3150716a85fSBarry Smith   }
3169566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
319857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
320a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3210716a85fSBarry Smith   }
3223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3230716a85fSBarry Smith }
3240716a85fSBarry Smith 
325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
326d71ae5a4SJacob Faibussowitsch {
327e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
328e52d2c62SBarry Smith   IS              sis, gis;
329e52d2c62SBarry Smith   const PetscInt *isis, *igis;
330e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
331e52d2c62SBarry Smith 
332e52d2c62SBarry Smith   PetscFunctionBegin;
3339566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3349566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3359566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
339e52d2c62SBarry Smith 
3409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3419566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
343e52d2c62SBarry Smith   n = ngis + nsis;
3449566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3459566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
346e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3479566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
348e52d2c62SBarry Smith 
3499566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3519566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
354e52d2c62SBarry Smith }
355e52d2c62SBarry Smith 
356dd6ea824SBarry Smith /*
3570f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3590f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36172fa4726SStefano Zampini has an order N integer array but is fast to access.
3629e25ed09SBarry Smith */
363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
364d71ae5a4SJacob Faibussowitsch {
36544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
366d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
367dbb450caSBarry Smith 
3683a40ed3dSBarry Smith   PetscFunctionBegin;
36908401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
371eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
372c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
373b1fc9764SSatish Balay #else
3749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
375905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
376b1fc9764SSatish Balay #endif
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3789e25ed09SBarry Smith }
3799e25ed09SBarry Smith 
380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
381a8f51744SPierre Jolivet   do { \
382db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
383db4deed7SKarl Rupp     else high1 = nrow1; \
384fd3458f5SBarry Smith     lastcol1 = col; \
385fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
386fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
387fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
388fd3458f5SBarry Smith       else low1 = t; \
389ba4e3ef2SSatish Balay     } \
390fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
391fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
392fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3930c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3940c0d7e18SFande Kong           ap1[_i] += value; \
3950c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3960c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3979371c9d4SSatish Balay         } else ap1[_i] = value; \
39830770e4dSSatish Balay         goto a_noinsert; \
3990520107fSSatish Balay       } \
4000520107fSSatish Balay     } \
4019371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4029371c9d4SSatish Balay       low1  = 0; \
4039371c9d4SSatish Balay       high1 = nrow1; \
4049371c9d4SSatish Balay       goto a_noinsert; \
4059371c9d4SSatish Balay     } \
4069371c9d4SSatish Balay     if (nonew == 1) { \
4079371c9d4SSatish Balay       low1  = 0; \
4089371c9d4SSatish Balay       high1 = nrow1; \
4099371c9d4SSatish Balay       goto a_noinsert; \
4109371c9d4SSatish Balay     } \
41108401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
412fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4139371c9d4SSatish Balay     N = nrow1++ - 1; \
4149371c9d4SSatish Balay     a->nz++; \
4159371c9d4SSatish Balay     high1++; \
4160520107fSSatish Balay     /* shift up all the later entries in this row */ \
4179566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
419fd3458f5SBarry Smith     rp1[_i] = col; \
420fd3458f5SBarry Smith     ap1[_i] = value; \
421e56f5c9eSBarry Smith     A->nonzerostate++; \
42230770e4dSSatish Balay   a_noinsert:; \
423fd3458f5SBarry Smith     ailen[row] = nrow1; \
424a8f51744SPierre Jolivet   } while (0)
4250a198c4cSBarry Smith 
426d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
427a8f51744SPierre Jolivet   do { \
428db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
429db4deed7SKarl Rupp     else high2 = nrow2; \
430fd3458f5SBarry Smith     lastcol2 = col; \
431fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
432fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
433fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
434fd3458f5SBarry Smith       else low2 = t; \
435ba4e3ef2SSatish Balay     } \
436fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
437fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
438fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4390c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4400c0d7e18SFande Kong           ap2[_i] += value; \
4410c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4429371c9d4SSatish Balay         } else ap2[_i] = value; \
44330770e4dSSatish Balay         goto b_noinsert; \
44430770e4dSSatish Balay       } \
44530770e4dSSatish Balay     } \
4469371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4479371c9d4SSatish Balay       low2  = 0; \
4489371c9d4SSatish Balay       high2 = nrow2; \
4499371c9d4SSatish Balay       goto b_noinsert; \
4509371c9d4SSatish Balay     } \
4519371c9d4SSatish Balay     if (nonew == 1) { \
4529371c9d4SSatish Balay       low2  = 0; \
4539371c9d4SSatish Balay       high2 = nrow2; \
4549371c9d4SSatish Balay       goto b_noinsert; \
4559371c9d4SSatish Balay     } \
45608401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
457fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4589371c9d4SSatish Balay     N = nrow2++ - 1; \
4599371c9d4SSatish Balay     b->nz++; \
4609371c9d4SSatish Balay     high2++; \
46130770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4629566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
464fd3458f5SBarry Smith     rp2[_i] = col; \
465fd3458f5SBarry Smith     ap2[_i] = value; \
466e56f5c9eSBarry Smith     B->nonzerostate++; \
46730770e4dSSatish Balay   b_noinsert:; \
468fd3458f5SBarry Smith     bilen[row] = nrow2; \
469a8f51744SPierre Jolivet   } while (0)
47030770e4dSSatish Balay 
471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
472d71ae5a4SJacob Faibussowitsch {
4732fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4742fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4752fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
476fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4772fd7e33dSBarry Smith 
4782fd7e33dSBarry Smith   PetscFunctionBegin;
4792fd7e33dSBarry Smith   /* code only works for square matrices A */
4802fd7e33dSBarry Smith 
4812fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4832fd7e33dSBarry Smith   row = row - diag;
4842fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4852fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4862fd7e33dSBarry Smith   }
487fff043a9SJunchao Zhang   if (l) {
4889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4899566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
491fff043a9SJunchao Zhang   }
4922fd7e33dSBarry Smith 
4932fd7e33dSBarry Smith   /* diagonal part */
494fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4969566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
498fff043a9SJunchao Zhang   }
4992fd7e33dSBarry Smith 
5002fd7e33dSBarry Smith   /* right of diagonal part */
501fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5039566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
505fff043a9SJunchao Zhang   }
5063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5072fd7e33dSBarry Smith }
5082fd7e33dSBarry Smith 
509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
510d71ae5a4SJacob Faibussowitsch {
51144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
512071fcb05SBarry Smith   PetscScalar value = 0.0;
513d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
514d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
515ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5168a729477SBarry Smith 
5170520107fSSatish Balay   /* Some Variables required in the macro */
5184ee7247eSSatish Balay   Mat         A     = aij->A;
5194ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
521ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52230770e4dSSatish Balay   Mat         B                 = aij->B;
52330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
524d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
525ce496241SStefano Zampini   MatScalar  *aa, *ba;
526fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5278d76821aSHong Zhang   PetscInt    nonew;
528a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5294ee7247eSSatish Balay 
5303a40ed3dSBarry Smith   PetscFunctionBegin;
5319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5338a729477SBarry Smith   for (i = 0; i < m; i++) {
5345ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5364b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5374b0e389bSBarry Smith       row      = im[i] - rstart;
538fd3458f5SBarry Smith       lastcol1 = -1;
5398e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5408e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
541fd3458f5SBarry Smith       rmax1    = aimax[row];
542fd3458f5SBarry Smith       nrow1    = ailen[row];
543fd3458f5SBarry Smith       low1     = 0;
544fd3458f5SBarry Smith       high1    = nrow1;
545fd3458f5SBarry Smith       lastcol2 = -1;
5468e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5478e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
548fd3458f5SBarry Smith       rmax2    = bimax[row];
549d498b1e9SBarry Smith       nrow2    = bilen[row];
550fd3458f5SBarry Smith       low2     = 0;
551fd3458f5SBarry Smith       high2    = nrow2;
552fd3458f5SBarry Smith 
5531eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
554071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
555c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
556fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
557fd3458f5SBarry Smith           col   = in[j] - cstart;
5588d76821aSHong Zhang           nonew = a->nonew;
559d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
560f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
561f7d195e4SLawrence Mitchell           continue;
562f7d195e4SLawrence Mitchell         } else {
563f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
564227d817aSBarry Smith           if (mat->was_assembled) {
56548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
567eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
568fa46199cSSatish Balay             col--;
569b1fc9764SSatish Balay #else
570905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
571b1fc9764SSatish Balay #endif
572f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
5739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));               /* Change aij->B from reduced/local format to expanded/global format */
5744b0e389bSBarry Smith               col = in[j];
5759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
576f9508a3cSSatish Balay               B     = aij->B;
577f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5789371c9d4SSatish Balay               bimax = b->imax;
5799371c9d4SSatish Balay               bi    = b->i;
5809371c9d4SSatish Balay               bilen = b->ilen;
5819371c9d4SSatish Balay               bj    = b->j;
5829371c9d4SSatish Balay               ba    = b->a;
583d498b1e9SBarry Smith               rp2   = bj + bi[row];
584d498b1e9SBarry Smith               ap2   = ba + bi[row];
585d498b1e9SBarry Smith               rmax2 = bimax[row];
586d498b1e9SBarry Smith               nrow2 = bilen[row];
587d498b1e9SBarry Smith               low2  = 0;
588d498b1e9SBarry Smith               high2 = nrow2;
589d0f46423SBarry Smith               bm    = aij->B->rmap->n;
590f9508a3cSSatish Balay               ba    = b->a;
591d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
592f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
5939566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5950587a0fcSBarry Smith             }
596c48de900SBarry Smith           } else col = in[j];
5978d76821aSHong Zhang           nonew = b->nonew;
598d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
5991eb62cbbSBarry Smith         }
6001eb62cbbSBarry Smith       }
6015ef9f2a5SBarry Smith     } else {
60228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60390f02eecSBarry Smith       if (!aij->donotstash) {
6045080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
605d36fbae8SSatish Balay         if (roworiented) {
6068e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
607d36fbae8SSatish Balay         } else {
6088e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6094b0e389bSBarry Smith         }
6101eb62cbbSBarry Smith       }
6118a729477SBarry Smith     }
61290f02eecSBarry Smith   }
6135519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6168a729477SBarry Smith }
6178a729477SBarry Smith 
6182b08fdbeSandi selinger /*
619904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6202b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
621904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6222b08fdbeSandi selinger */
623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
624d71ae5a4SJacob Faibussowitsch {
625904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
626904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6274cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
628904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
629904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
630904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
631904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
632904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6336dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
634904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
635904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
636904d1e70Sandi selinger 
637904d1e70Sandi selinger   PetscFunctionBegin;
638904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
639904d1e70Sandi selinger   for (j = 0; j < am; j++) {
640904d1e70Sandi selinger     dnz = onz = 0;
641904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6426dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
643904d1e70Sandi selinger       /* If column is in the diagonal */
644904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
645904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
646904d1e70Sandi selinger         dnz++;
647904d1e70Sandi selinger       } else { /* off-diagonal entries */
648904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
649904d1e70Sandi selinger         onz++;
650904d1e70Sandi selinger       }
651904d1e70Sandi selinger     }
652904d1e70Sandi selinger     ailen[j] = dnz;
653904d1e70Sandi selinger     bilen[j] = onz;
654904d1e70Sandi selinger   }
6553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
656904d1e70Sandi selinger }
657904d1e70Sandi selinger 
658904d1e70Sandi selinger /*
659904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
660904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6611de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6621de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6631de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
664904d1e70Sandi selinger */
665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
666d71ae5a4SJacob Faibussowitsch {
6673a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6683a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6694cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
670f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6713a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6733a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6743a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6753a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6766dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6771de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
678904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
679904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6803a063d27Sandi selinger 
6813a063d27Sandi selinger   PetscFunctionBegin;
6823a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6833a063d27Sandi selinger   for (j = 0; j < am; j++) {
684904d1e70Sandi selinger     dnz_row = onz_row = 0;
685904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
686904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
687e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
688e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
689ae8e66a0Sandi selinger       /* If column is in the diagonal */
6903a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
691904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
692904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
693904d1e70Sandi selinger         dnz_row++;
694ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
695904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
696904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
697904d1e70Sandi selinger         onz_row++;
6983a063d27Sandi selinger       }
6993a063d27Sandi selinger     }
700904d1e70Sandi selinger     ailen[j] = dnz_row;
701904d1e70Sandi selinger     bilen[j] = onz_row;
7023a063d27Sandi selinger   }
7033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7043a063d27Sandi selinger }
7053a063d27Sandi selinger 
706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
707d71ae5a4SJacob Faibussowitsch {
708b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
709d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
710d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
711b49de8d1SLois Curfman McInnes 
7123a40ed3dSBarry Smith   PetscFunctionBegin;
713b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
717b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
718b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
71954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
721b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
722b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7239566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
724fa852ad4SSatish Balay       } else {
72548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
727eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
728fa46199cSSatish Balay         col--;
729b1fc9764SSatish Balay #else
730905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
731b1fc9764SSatish Balay #endif
732e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
734b49de8d1SLois Curfman McInnes       }
735b49de8d1SLois Curfman McInnes     }
736b49de8d1SLois Curfman McInnes   }
7373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
738b49de8d1SLois Curfman McInnes }
739bc5ccf88SSatish Balay 
740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
741d71ae5a4SJacob Faibussowitsch {
742bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
743b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
744bc5ccf88SSatish Balay 
745bc5ccf88SSatish Balay   PetscFunctionBegin;
7463ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
747bc5ccf88SSatish Balay 
7489566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7499566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
752bc5ccf88SSatish Balay }
753bc5ccf88SSatish Balay 
754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
755d71ae5a4SJacob Faibussowitsch {
756bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
757b1d57f15SBarry Smith   PetscMPIInt  n;
758b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
759e44c0bd4SBarry Smith   PetscInt    *row, *col;
760ace3abfcSBarry Smith   PetscBool    other_disassembled;
76187828ca2SBarry Smith   PetscScalar *val;
762bc5ccf88SSatish Balay 
76391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7646e111a19SKarl Rupp 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7664cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
767a2d1c673SSatish Balay     while (1) {
7689566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
769a2d1c673SSatish Balay       if (!flg) break;
770a2d1c673SSatish Balay 
771bc5ccf88SSatish Balay       for (i = 0; i < n;) {
772bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7732205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7742205254eSKarl Rupp           if (row[j] != rstart) break;
7752205254eSKarl Rupp         }
776bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
777bc5ccf88SSatish Balay         else ncols = n - i;
778bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7799566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
780bc5ccf88SSatish Balay         i = j;
781bc5ccf88SSatish Balay       }
782bc5ccf88SSatish Balay     }
7839566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
784bc5ccf88SSatish Balay   }
7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
786c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7879ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7889ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7899566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7919ecce9b1SRichard Tran Mills   }
792e2cf4d64SStefano Zampini #endif
7939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
795bc5ccf88SSatish Balay 
796bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
797071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
798bc5ccf88SSatish Balay   /*
799bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
800bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
801bc5ccf88SSatish Balay   */
802bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8035f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8059566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
806ad59fb31SSatish Balay     }
807ad59fb31SSatish Balay   }
80848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
811c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
815bc5ccf88SSatish Balay 
8169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8172205254eSKarl Rupp 
818f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
819a30b2313SHong Zhang 
8209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
821e56f5c9eSBarry Smith 
8224f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
823f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
824e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8251c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
826e56f5c9eSBarry Smith   }
8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
828c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
829e2cf4d64SStefano Zampini #endif
8303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
831bc5ccf88SSatish Balay }
832bc5ccf88SSatish Balay 
833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
834d71ae5a4SJacob Faibussowitsch {
83544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8363a40ed3dSBarry Smith 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
8389566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8411eb62cbbSBarry Smith }
8421eb62cbbSBarry Smith 
843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
844d71ae5a4SJacob Faibussowitsch {
8451b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8461b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8476e520ac8SStefano Zampini   PetscInt    r, len;
8489939a2d1SBarry Smith   PetscBool   cong;
8491eb62cbbSBarry Smith 
8503a40ed3dSBarry Smith   PetscFunctionBegin;
8516e520ac8SStefano Zampini   /* get locally owned rows */
8529566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8539566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
854dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
85597b48c8fSBarry Smith   if (x && b) {
8561b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8571b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8581b1dd7adSMatthew G. Knepley 
85928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8619566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8621b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86597b48c8fSBarry Smith   }
866a92ad425SStefano Zampini 
867a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8689566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8699566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
870a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
871a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
872a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
873a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
874a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
875a92ad425SStefano Zampini 
876a92ad425SStefano Zampini     nnwA = aijA->nonew;
877a92ad425SStefano Zampini     nnwB = aijB->nonew;
878a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
879a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
880a92ad425SStefano Zampini     if (!nnzA) {
8819566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
882a92ad425SStefano Zampini       aijA->nonew = 0;
883a92ad425SStefano Zampini     }
884a92ad425SStefano Zampini     if (!nnzB) {
8859566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
886a92ad425SStefano Zampini       aijB->nonew = 0;
887a92ad425SStefano Zampini     }
888a92ad425SStefano Zampini     /* Must zero here before the next loop */
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8909566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8911b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8921b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
893a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8949566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
895e2d53e46SBarry Smith     }
896a92ad425SStefano Zampini     aijA->nonew = nnwA;
897a92ad425SStefano Zampini     aijB->nonew = nnwB;
8986eb55b6aSBarry Smith   } else {
8999566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9009566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9016eb55b6aSBarry Smith   }
9029566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9054f9cfa9eSBarry Smith 
9069939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
907f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9089939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
9099939a2d1SBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9109939a2d1SBarry Smith   }
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9121eb62cbbSBarry Smith }
9131eb62cbbSBarry Smith 
914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
915d71ae5a4SJacob Faibussowitsch {
9169c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9175ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
918131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
91954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
920131c27b5Sprj-   PetscMPIInt        p = 0;
92154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92254bd4135SMatthew G. Knepley   PetscSF            sf;
9239c7c4993SBarry Smith   const PetscScalar *xx;
924fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
925564f14d6SBarry Smith   Vec                xmask, lmask;
926564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
927564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
928564f14d6SBarry Smith   PetscScalar       *aa;
9299c7c4993SBarry Smith 
9309c7c4993SBarry Smith   PetscFunctionBegin;
93154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
937aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9385ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9399566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9405ba17502SJed Brown     }
94154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9439c7c4993SBarry Smith   }
9449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9479566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9519371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9529371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
953564f14d6SBarry Smith   /* zero diagonal part of matrix */
9549566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9554cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9569566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9579566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9589566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
95954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
964a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
965a92ad425SStefano Zampini     PetscBool cong;
966a92ad425SStefano Zampini 
9679566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9729566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
973377aa5a1SBarry Smith   }
9749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9754cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
977564f14d6SBarry Smith   ii = aij->i;
9788e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
979564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
980564f14d6SBarry Smith   if (aij->compressedrow.use) {
981564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
982564f14d6SBarry Smith     ii   = aij->compressedrow.i;
983564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
984564f14d6SBarry Smith     for (i = 0; i < m; i++) {
985564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
986564f14d6SBarry Smith       aj = aij->j + ii[i];
987fff043a9SJunchao Zhang       aa = aij_a + ii[i];
988564f14d6SBarry Smith 
989564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
991377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
992564f14d6SBarry Smith           *aa = 0.0;
993564f14d6SBarry Smith         }
994564f14d6SBarry Smith         aa++;
995564f14d6SBarry Smith         aj++;
996564f14d6SBarry Smith       }
997564f14d6SBarry Smith       ridx++;
998564f14d6SBarry Smith     }
999564f14d6SBarry Smith   } else { /* do not use compressed row format */
1000564f14d6SBarry Smith     m = l->B->rmap->n;
1001564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1002564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1003564f14d6SBarry Smith       aj = aij->j + ii[i];
1004fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1005564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1007377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1008564f14d6SBarry Smith           *aa = 0.0;
1009564f14d6SBarry Smith         }
1010564f14d6SBarry Smith         aa++;
1011564f14d6SBarry Smith         aj++;
1012564f14d6SBarry Smith       }
1013564f14d6SBarry Smith     }
1014564f14d6SBarry Smith   }
1015a92ad425SStefano Zampini   if (x && b) {
10169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1018377aa5a1SBarry Smith   }
10199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10209566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10234f9cfa9eSBarry Smith 
10244f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1025f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10264f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10271c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10284f9cfa9eSBarry Smith   }
10293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10309c7c4993SBarry Smith }
10319c7c4993SBarry Smith 
1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1033d71ae5a4SJacob Faibussowitsch {
1034416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1035b1d57f15SBarry Smith   PetscInt    nt;
103619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1037416022c9SBarry Smith 
10383a40ed3dSBarry Smith   PetscFunctionBegin;
10399566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10419566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1042296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1044296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10461eb62cbbSBarry Smith }
10471eb62cbbSBarry Smith 
1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1049d71ae5a4SJacob Faibussowitsch {
1050bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1051bd0c2dcbSBarry Smith 
1052bd0c2dcbSBarry Smith   PetscFunctionBegin;
10539566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1055bd0c2dcbSBarry Smith }
1056bd0c2dcbSBarry Smith 
1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1058d71ae5a4SJacob Faibussowitsch {
1059416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10613a40ed3dSBarry Smith 
10623a40ed3dSBarry Smith   PetscFunctionBegin;
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10669566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1068da3a660dSBarry Smith }
1069da3a660dSBarry Smith 
1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1071d71ae5a4SJacob Faibussowitsch {
1072416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1073da3a660dSBarry Smith 
10743a40ed3dSBarry Smith   PetscFunctionBegin;
1075da3a660dSBarry Smith   /* do nondiagonal part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1077da3a660dSBarry Smith   /* do local part */
10789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10799613dc34SJunchao Zhang   /* add partial results together */
10809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1083da3a660dSBarry Smith }
1084da3a660dSBarry Smith 
1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1086d71ae5a4SJacob Faibussowitsch {
10874f423910Svictorle   MPI_Comm    comm;
1088ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1089ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1090cd0d46ebSvictorle   IS          Me, Notme;
1091b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109254d735aeSStefano Zampini   PetscBool   lf;
1093b1d57f15SBarry Smith   PetscMPIInt size;
1094cd0d46ebSvictorle 
1095cd0d46ebSvictorle   PetscFunctionBegin;
109642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10979566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
10981c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
10993ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11023ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110342e5f5b4Svictorle 
11047dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11059566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11069566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1108cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1109cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11109566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11119566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111366501d38Svictorle   Aoff = Aoffs[0];
11149566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111566501d38Svictorle   Boff = Boffs[0];
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11179566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11189566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11199566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11219566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1123cd0d46ebSvictorle }
1124cd0d46ebSvictorle 
1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1126d71ae5a4SJacob Faibussowitsch {
1127416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1128da3a660dSBarry Smith 
11293a40ed3dSBarry Smith   PetscFunctionBegin;
1130da3a660dSBarry Smith   /* do nondiagonal part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1132da3a660dSBarry Smith   /* do local part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11349613dc34SJunchao Zhang   /* add partial results together */
11359566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11369566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1138da3a660dSBarry Smith }
1139da3a660dSBarry Smith 
11401eb62cbbSBarry Smith /*
11411eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11421eb62cbbSBarry Smith    diagonal block
11431eb62cbbSBarry Smith */
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11473a40ed3dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
114908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1150aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11519566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11531eb62cbbSBarry Smith }
11541eb62cbbSBarry Smith 
1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1156d71ae5a4SJacob Faibussowitsch {
1157052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11583a40ed3dSBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
11609566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11619566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1163052efed2SBarry Smith }
1164052efed2SBarry Smith 
1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1166d71ae5a4SJacob Faibussowitsch {
11678e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11688e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11698e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11703ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11712e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
117217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
117317a3732bSBarry Smith   PetscInt64         nz, hnz;
11743ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11753ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11763ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
117717a3732bSBarry Smith   PetscMPIInt        rank;
11788e2fed03SBarry Smith 
11798e2fed03SBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11813ea6fe3dSLisandro Dalcin 
11823ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11833ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11843ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11853ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11863ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11878e2fed03SBarry Smith   nz = A->nz + B->nz;
11883ea6fe3dSLisandro Dalcin 
11893ea6fe3dSLisandro Dalcin   /* write matrix header */
11900700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11919371c9d4SSatish Balay   header[1] = M;
11929371c9d4SSatish Balay   header[2] = N;
119317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
119417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
119538b83642SBarry Smith   if (rank == 0) {
119638b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
119738b83642SBarry Smith     else header[3] = (PetscInt)hnz;
119838b83642SBarry Smith   }
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12008e2fed03SBarry Smith 
12013ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12033ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12049566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12068e2fed03SBarry Smith 
12073ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12093ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12103ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12113ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12123ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12138e2fed03SBarry Smith     }
12149371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12159371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12168e2fed03SBarry Smith   }
121717a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12189566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12199566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12208e2fed03SBarry Smith 
12213ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12282e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12328e2fed03SBarry Smith   }
12339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
123517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12369566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12379566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12388e2fed03SBarry Smith 
12393ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12409566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12428e2fed03SBarry Smith }
12438e2fed03SBarry Smith 
12449804daf3SBarry Smith #include <petscdraw.h>
1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1246d71ae5a4SJacob Faibussowitsch {
124744a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
124832dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1249ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1250b0a32e0cSBarry Smith   PetscViewer       sviewer;
1251f3ef73ceSBarry Smith   PetscViewerFormat format;
1252416022c9SBarry Smith 
12533a40ed3dSBarry Smith   PetscFunctionBegin;
12549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
125732077d6dSBarry Smith   if (iascii) {
12589566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1259ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1260f4f49eeaSPierre Jolivet       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12629566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1263ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1264ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1265ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1266ef5fdb51SBarry Smith         navg += nz[i];
1267ef5fdb51SBarry Smith       }
12689566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1269ef5fdb51SBarry Smith       navg = navg / size;
12709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12713ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1272ef5fdb51SBarry Smith     }
12739566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1274456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12754e220ebcSLois Curfman McInnes       MatInfo   info;
12766335e310SSatish Balay       PetscInt *inodes = NULL;
1277923f20ffSKris Buschelman 
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12799566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12809566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1282923f20ffSKris Buschelman       if (!inodes) {
12839371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12849371c9d4SSatish Balay                                                      (double)info.memory));
12856831982aSBarry Smith       } else {
12869371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12879371c9d4SSatish Balay                                                      (double)info.memory));
12886831982aSBarry Smith       }
12899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12919566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12939566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
12949566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
12959566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
12969566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
12973ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1298fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1299923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13009566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1301923f20ffSKris Buschelman       if (inodes) {
13029566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1303d38fa0fbSBarry Smith       } else {
13049566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1305d38fa0fbSBarry Smith       }
13063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13074aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
130908480c60SBarry Smith     }
13108e2fed03SBarry Smith   } else if (isbinary) {
13118e2fed03SBarry Smith     if (size == 1) {
13129566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13139566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13148e2fed03SBarry Smith     } else {
13159566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13168e2fed03SBarry Smith     }
13173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
131871e56450SStefano Zampini   } else if (iascii && size == 1) {
13199566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13209566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13220f5bd95cSBarry Smith   } else if (isdraw) {
1323b0a32e0cSBarry Smith     PetscDraw draw;
1324ace3abfcSBarry Smith     PetscBool isnull;
13259566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13269566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13273ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
132819bcc07fSBarry Smith   }
132919bcc07fSBarry Smith 
133071e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
133171e56450SStefano Zampini     Mat A = NULL, Av;
133271e56450SStefano Zampini     IS  isrow, iscol;
13332ee70a88SLois Curfman McInnes 
13349566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13359566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13369566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13379566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
133871e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
133971e56450SStefano Zampini     /*
134071e56450SStefano Zampini     Mat *AA, A = NULL, Av;
134171e56450SStefano Zampini     IS  isrow,iscol;
134271e56450SStefano Zampini 
13439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13449566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13459566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1346dd400576SPatrick Sanan     if (rank == 0) {
13479566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
134871e56450SStefano Zampini        A    = AA[0];
134971e56450SStefano Zampini        Av   = AA[0];
135095373324SBarry Smith     }
13519566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
135271e56450SStefano Zampini */
13539566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
135555843e3eSBarry Smith     /*
135655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1357b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
135855843e3eSBarry Smith     */
13599566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1360dd400576SPatrick Sanan     if (rank == 0) {
136148a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13629566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
136395373324SBarry Smith     }
13649566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13659566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
136695373324SBarry Smith   }
13673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13681eb62cbbSBarry Smith }
13691eb62cbbSBarry Smith 
1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1371d71ae5a4SJacob Faibussowitsch {
1372ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1373416022c9SBarry Smith 
13743a40ed3dSBarry Smith   PetscFunctionBegin;
13759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
137948a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1381416022c9SBarry Smith }
1382416022c9SBarry Smith 
1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1384d71ae5a4SJacob Faibussowitsch {
138544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1386f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1387ace3abfcSBarry Smith   PetscBool   hasop;
13888a729477SBarry Smith 
13893a40ed3dSBarry Smith   PetscFunctionBegin;
1390a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13919566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13923ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1393a2b30743SBarry Smith   }
1394a2b30743SBarry Smith 
139548a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
13964e980039SJed Brown 
1397c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1398da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
13999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14002798e883SHong Zhang       its--;
1401da3a660dSBarry Smith     }
14022798e883SHong Zhang 
14032798e883SHong Zhang     while (its--) {
14049566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14059566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14062798e883SHong Zhang 
1407c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14089566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14099566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14102798e883SHong Zhang 
1411c14dc6b6SHong Zhang       /* local sweep */
14129566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14132798e883SHong Zhang     }
14143a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1426c14dc6b6SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14422798e883SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
1446a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1447a7420bb7SBarry Smith     Vec xx1;
1448a7420bb7SBarry Smith 
14499566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14509566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1451a7420bb7SBarry Smith 
14529566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1454a7420bb7SBarry Smith     if (!mat->diag) {
14559566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14569566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1457a7420bb7SBarry Smith     }
14589566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1459bd0c2dcbSBarry Smith     if (hasop) {
14609566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1461bd0c2dcbSBarry Smith     } else {
14629566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1463bd0c2dcbSBarry Smith     }
14649566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1465887ee2caSBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1467a7420bb7SBarry Smith 
1468a7420bb7SBarry Smith     /* local sweep */
14699566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14709566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14719566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1472ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1473c14dc6b6SHong Zhang 
14749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1475a0808db4SHong Zhang 
14767b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14788a729477SBarry Smith }
1479a66be287SLois Curfman McInnes 
1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1481d71ae5a4SJacob Faibussowitsch {
148272e6a0cfSJed Brown   Mat             aA, aB, Aperm;
148372e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
148472e6a0cfSJed Brown   PetscScalar    *aa, *ba;
148572e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
148672e6a0cfSJed Brown   PetscSF         rowsf, sf;
14870298fd71SBarry Smith   IS              parcolp = NULL;
148872e6a0cfSJed Brown   PetscBool       done;
148942e855d1Svictor 
149042e855d1Svictor   PetscFunctionBegin;
14919566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
14929566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
14939566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
14949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
149572e6a0cfSJed Brown 
149672e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
14979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
14989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
14999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
150072e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15029566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
150372e6a0cfSJed Brown 
150472e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
150872e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15119566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
151272e6a0cfSJed Brown 
15139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15149566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
151672e6a0cfSJed Brown 
151772e6a0cfSJed Brown   /* Find out where my gcols should go */
15189566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152672e6a0cfSJed Brown 
15279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15289566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15299566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
153072e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1531131c27b5Sprj-     PetscInt    row = rdest[i];
1532131c27b5Sprj-     PetscMPIInt rowner;
15339566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
153472e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1535131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1536131c27b5Sprj-       PetscMPIInt cowner;
15379566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
153872e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
153972e6a0cfSJed Brown       else onnz[i]++;
154072e6a0cfSJed Brown     }
154172e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1542131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1543131c27b5Sprj-       PetscMPIInt cowner;
15449566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
154572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154672e6a0cfSJed Brown       else onnz[i]++;
154772e6a0cfSJed Brown     }
154872e6a0cfSJed Brown   }
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
155472e6a0cfSJed Brown 
15559566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
155872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
155972e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1560970468b0SJed Brown     PetscInt  j0, rowlen;
156172e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1562970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1563970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15649566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1565970468b0SJed Brown     }
156672e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1567970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1568970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15699566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1570970468b0SJed Brown     }
157172e6a0cfSJed Brown   }
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15749566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15759566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15799566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15809566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15819566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
158272e6a0cfSJed Brown   *B = Aperm;
15833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158442e855d1Svictor }
158542e855d1Svictor 
1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1587d71ae5a4SJacob Faibussowitsch {
1588c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1589c5e4d11fSDmitry Karpeev 
1590c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15919566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1592c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
15933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1594c5e4d11fSDmitry Karpeev }
1595c5e4d11fSDmitry Karpeev 
1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1597d71ae5a4SJacob Faibussowitsch {
1598a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1599a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16003966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1601a66be287SLois Curfman McInnes 
16023a40ed3dSBarry Smith   PetscFunctionBegin;
16034e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16049566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16052205254eSKarl Rupp 
16069371c9d4SSatish Balay   isend[0] = info->nz_used;
16079371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16089371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16099371c9d4SSatish Balay   isend[3] = info->memory;
16109371c9d4SSatish Balay   isend[4] = info->mallocs;
16112205254eSKarl Rupp 
16129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16132205254eSKarl Rupp 
16149371c9d4SSatish Balay   isend[0] += info->nz_used;
16159371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16169371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16179371c9d4SSatish Balay   isend[3] += info->memory;
16189371c9d4SSatish Balay   isend[4] += info->mallocs;
1619a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16204e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16214e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16224e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16234e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16244e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1625a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16272205254eSKarl Rupp 
16284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1633a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16341c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16352205254eSKarl Rupp 
16364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1641a66be287SLois Curfman McInnes   }
16424e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16434e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16444e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1646a66be287SLois Curfman McInnes }
1647a66be287SLois Curfman McInnes 
1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1649d71ae5a4SJacob Faibussowitsch {
1650c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1651c74985f6SBarry Smith 
16523a40ed3dSBarry Smith   PetscFunctionBegin;
165312c028f9SKris Buschelman   switch (op) {
1654512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
165512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
165628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1657a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
165812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16590ad02fcaSStefano Zampini   case MAT_USE_INODES:
166012c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16611a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1662fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
166512c028f9SKris Buschelman     break;
166612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
166743674050SBarry Smith     MatCheckPreallocated(A, 1);
16684e0d8c25SBarry Smith     a->roworiented = flg;
16692205254eSKarl Rupp 
16709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167212c028f9SKris Buschelman     break;
16738c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1674d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1675d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1676d71ae5a4SJacob Faibussowitsch     break;
1677d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1678d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1679d71ae5a4SJacob Faibussowitsch     break;
1680c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1681ffa07934SHong Zhang   case MAT_SPD:
168277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1684bf108f30SBarry Smith   case MAT_HERMITIAN:
1685bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1686b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1687b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1688b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
168977e54ba9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1691d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1694957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1695957cac9fSHong Zhang     break;
1696d71ae5a4SJacob Faibussowitsch   default:
1697d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
16983a40ed3dSBarry Smith   }
16993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1700c74985f6SBarry Smith }
1701c74985f6SBarry Smith 
1702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1703d71ae5a4SJacob Faibussowitsch {
1704154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
170587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1706d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1707d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1708b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
170939e00950SLois Curfman McInnes 
17103a40ed3dSBarry Smith   PetscFunctionBegin;
171128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17127a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17137a0afa10SBarry Smith 
171470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17157a0afa10SBarry Smith     /*
17167a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17177a0afa10SBarry Smith     */
17187a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1719b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1720d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17217a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17222205254eSKarl Rupp       if (max < tmp) max = tmp;
17237a0afa10SBarry Smith     }
17249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17257a0afa10SBarry Smith   }
17267a0afa10SBarry Smith 
1727aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1728abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
172939e00950SLois Curfman McInnes 
17309371c9d4SSatish Balay   pvA = &vworkA;
17319371c9d4SSatish Balay   pcA = &cworkA;
17329371c9d4SSatish Balay   pvB = &vworkB;
17339371c9d4SSatish Balay   pcB = &cworkB;
17349371c9d4SSatish Balay   if (!v) {
17359371c9d4SSatish Balay     pvA = NULL;
17369371c9d4SSatish Balay     pvB = NULL;
17379371c9d4SSatish Balay   }
17389371c9d4SSatish Balay   if (!idx) {
17399371c9d4SSatish Balay     pcA = NULL;
17409371c9d4SSatish Balay     if (!v) pcB = NULL;
17419371c9d4SSatish Balay   }
17429566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17439566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1744154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1745154123eaSLois Curfman McInnes 
174670f0671dSBarry Smith   cmap = mat->garray;
1747154123eaSLois Curfman McInnes   if (v || idx) {
1748154123eaSLois Curfman McInnes     if (nztot) {
1749154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1750b1d57f15SBarry Smith       PetscInt imark = -1;
1751154123eaSLois Curfman McInnes       if (v) {
175270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
175339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
175470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1755154123eaSLois Curfman McInnes           else break;
1756154123eaSLois Curfman McInnes         }
1757154123eaSLois Curfman McInnes         imark = i;
175870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
175970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1760154123eaSLois Curfman McInnes       }
1761154123eaSLois Curfman McInnes       if (idx) {
176270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
176370f0671dSBarry Smith         if (imark > -1) {
1764ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
176570f0671dSBarry Smith         } else {
1766154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
176770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1768154123eaSLois Curfman McInnes             else break;
1769154123eaSLois Curfman McInnes           }
1770154123eaSLois Curfman McInnes           imark = i;
177170f0671dSBarry Smith         }
177270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
177370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
177439e00950SLois Curfman McInnes       }
17753f97c4b0SBarry Smith     } else {
1776f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1777f4259b30SLisandro Dalcin       if (v) *v = NULL;
17781ca473b0SSatish Balay     }
1779154123eaSLois Curfman McInnes   }
178039e00950SLois Curfman McInnes   *nz = nztot;
17819566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17829566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
178439e00950SLois Curfman McInnes }
178539e00950SLois Curfman McInnes 
1786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1787d71ae5a4SJacob Faibussowitsch {
17887a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17893a40ed3dSBarry Smith 
17903a40ed3dSBarry Smith   PetscFunctionBegin;
179128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
17927a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1797d71ae5a4SJacob Faibussowitsch {
1798855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1799ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1800d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1801329f5518SBarry Smith   PetscReal        sum = 0.0;
1802fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
180304ca555eSLois Curfman McInnes 
18043a40ed3dSBarry Smith   PetscFunctionBegin;
180517699dbbSLois Curfman McInnes   if (aij->size == 1) {
18069566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
180737fa93a5SLois Curfman McInnes   } else {
18089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
181004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1811fff043a9SJunchao Zhang       v = amata;
181204ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18139371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18149371c9d4SSatish Balay         v++;
181504ca555eSLois Curfman McInnes       }
1816fff043a9SJunchao Zhang       v = bmata;
181704ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18189371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18199371c9d4SSatish Balay         v++;
182004ca555eSLois Curfman McInnes       }
18211c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18228f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18239566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18243a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1825329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1826b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18279566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18289566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
182904ca555eSLois Curfman McInnes       *norm = 0.0;
18309371c9d4SSatish Balay       v     = amata;
18319371c9d4SSatish Balay       jj    = amat->j;
183204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18339371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18349371c9d4SSatish Balay         v++;
183504ca555eSLois Curfman McInnes       }
18369371c9d4SSatish Balay       v  = bmata;
18379371c9d4SSatish Balay       jj = bmat->j;
183804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18399371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18409371c9d4SSatish Balay         v++;
184104ca555eSLois Curfman McInnes       }
18421c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1843d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
184404ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
184504ca555eSLois Curfman McInnes       }
18469566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18479566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18489566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18493a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1850329f5518SBarry Smith       PetscReal ntemp = 0.0;
1851d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18528e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
185304ca555eSLois Curfman McInnes         sum = 0.0;
185404ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18559371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18569371c9d4SSatish Balay           v++;
185704ca555eSLois Curfman McInnes         }
18588e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
185904ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18609371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18619371c9d4SSatish Balay           v++;
186204ca555eSLois Curfman McInnes         }
1863515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
186404ca555eSLois Curfman McInnes       }
18651c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18669566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1867ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18689566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187037fa93a5SLois Curfman McInnes   }
18713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1872855ac2c5SLois Curfman McInnes }
1873855ac2c5SLois Curfman McInnes 
1874ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1875d71ae5a4SJacob Faibussowitsch {
1876a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1877a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1878071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1879071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1880a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1881ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1882b7c46309SBarry Smith 
18833a40ed3dSBarry Smith   PetscFunctionBegin;
18847fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18859371c9d4SSatish Balay   ma = A->rmap->n;
18869371c9d4SSatish Balay   na = A->cmap->n;
18879371c9d4SSatish Balay   mb = a->B->rmap->n;
18889371c9d4SSatish Balay   nb = a->B->cmap->n;
18899371c9d4SSatish Balay   ai = Aloc->i;
18909371c9d4SSatish Balay   aj = Aloc->j;
18919371c9d4SSatish Balay   bi = Bloc->i;
18929371c9d4SSatish Balay   bj = Bloc->j;
1893fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
189480bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
189580bcc5a1SJed Brown     PetscSFNode         *oloc;
1896713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
189780bcc5a1SJed Brown 
18989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
189980bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19009566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1901cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
190280bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19039566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
190480bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
190580bcc5a1SJed Brown     /* map those to global */
19069566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19079566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19089566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191057168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191157168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19129566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1913d4bb536fSBarry Smith 
19149566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19159566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19169566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19179566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19189566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19199566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1920fc4dec0aSBarry Smith   } else {
1921fc4dec0aSBarry Smith     B = *matout;
19229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1923fc4dec0aSBarry Smith   }
1924b7c46309SBarry Smith 
1925f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1926a8661f62Sandi selinger   A_diag      = a->A;
1927a8661f62Sandi selinger   B_diag      = &b->A;
1928a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1929a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1930a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1931a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1932f79cb1a0Sandi selinger 
1933f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1934ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1935f79cb1a0Sandi selinger 
19364cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1937a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19387fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19399566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1940f79cb1a0Sandi selinger 
1941b7c46309SBarry Smith   /* copy over the B part */
19429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1944ce496241SStefano Zampini   pbv = bv;
1945d0f46423SBarry Smith   row = A->rmap->rstart;
19462205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
194761a2fbbaSHong Zhang   cols_tmp = cols;
1948da668accSHong Zhang   for (i = 0; i < mb; i++) {
1949da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19509566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19512205254eSKarl Rupp     row++;
1952720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1953720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1954b7c46309SBarry Smith   }
19559566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1957fc73b1b3SBarry Smith 
19589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1960cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19610de55854SLois Curfman McInnes     *matout = B;
19620de55854SLois Curfman McInnes   } else {
19639566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19640de55854SLois Curfman McInnes   }
19653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1966b7c46309SBarry Smith }
1967b7c46309SBarry Smith 
1968ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1969d71ae5a4SJacob Faibussowitsch {
19704b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19714b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1972b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1973a008b906SSatish Balay 
19743a40ed3dSBarry Smith   PetscFunctionBegin;
19759566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19764b967eb1SSatish Balay   if (rr) {
19779566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
197808401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19794b967eb1SSatish Balay     /* Overlap communication with computation. */
19809566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1981a008b906SSatish Balay   }
19824b967eb1SSatish Balay   if (ll) {
19839566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
198408401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1985dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19864b967eb1SSatish Balay   }
19874b967eb1SSatish Balay   /* scale  the diagonal block */
1988dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19894b967eb1SSatish Balay 
19904b967eb1SSatish Balay   if (rr) {
19914b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
19929566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1993dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
19944b967eb1SSatish Balay   }
19953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1996a008b906SSatish Balay }
1997a008b906SSatish Balay 
1998ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
1999d71ae5a4SJacob Faibussowitsch {
2000bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20013a40ed3dSBarry Smith 
20023a40ed3dSBarry Smith   PetscFunctionBegin;
20039566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005bb5a7306SBarry Smith }
2006bb5a7306SBarry Smith 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2008d71ae5a4SJacob Faibussowitsch {
2009d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2010d4bb536fSBarry Smith   Mat         a, b, c, d;
2011ace3abfcSBarry Smith   PetscBool   flg;
2012d4bb536fSBarry Smith 
20133a40ed3dSBarry Smith   PetscFunctionBegin;
20149371c9d4SSatish Balay   a = matA->A;
20159371c9d4SSatish Balay   b = matA->B;
20169371c9d4SSatish Balay   c = matB->A;
20179371c9d4SSatish Balay   d = matB->B;
2018d4bb536fSBarry Smith 
20199566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202048a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20211c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2023d4bb536fSBarry Smith }
2024d4bb536fSBarry Smith 
2025ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2026d71ae5a4SJacob Faibussowitsch {
2027cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2028cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2029cb5b572fSBarry Smith 
2030cb5b572fSBarry Smith   PetscFunctionBegin;
203133f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
203233f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2033cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2034cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2035cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2036cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2037cb5b572fSBarry Smith        then copying the submatrices */
20389566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2039cb5b572fSBarry Smith   } else {
20409566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20419566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2042cb5b572fSBarry Smith   }
20439566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2045cb5b572fSBarry Smith }
2046cb5b572fSBarry Smith 
2047001ddc4fSHong Zhang /*
2048001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2049001ddc4fSHong Zhang    have different nonzero structure.
2050001ddc4fSHong Zhang */
2051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2052d71ae5a4SJacob Faibussowitsch {
2053001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
205495b7e79eSJed Brown 
205595b7e79eSJed Brown   PetscFunctionBegin;
205695b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
205795b7e79eSJed Brown   for (i = 0; i < m; i++) {
20588e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2059001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2060001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206195b7e79eSJed Brown     nnz[i] = 0;
206295b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2063001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2064001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
206595b7e79eSJed Brown       nnz[i]++;
206695b7e79eSJed Brown     }
206795b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
206895b7e79eSJed Brown   }
20693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207095b7e79eSJed Brown }
207195b7e79eSJed Brown 
2072001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2073d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2074d71ae5a4SJacob Faibussowitsch {
2075001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2076001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2077001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2078001ddc4fSHong Zhang 
2079001ddc4fSHong Zhang   PetscFunctionBegin;
20809566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2082001ddc4fSHong Zhang }
2083001ddc4fSHong Zhang 
2084ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2085d71ae5a4SJacob Faibussowitsch {
2086ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2087ac90fabeSBarry Smith 
2088ac90fabeSBarry Smith   PetscFunctionBegin;
2089ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20909566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20919566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2092ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
20939566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2094ac90fabeSBarry Smith   } else {
20959f5f6813SShri Abhyankar     Mat       B;
20969f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2097d9d719b4SStefano Zampini 
20989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
20999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21009566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21019566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21029566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21039566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21049566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21059566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21069566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21079566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21089566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21099566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21109566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2111ac90fabeSBarry Smith   }
21123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2113ac90fabeSBarry Smith }
2114ac90fabeSBarry Smith 
21152726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2116354c94deSBarry Smith 
2117ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2118d71ae5a4SJacob Faibussowitsch {
21195f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21205f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2121354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2122354c94deSBarry Smith 
21239566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21249566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21255f80ce2aSJacob Faibussowitsch   }
21263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2127354c94deSBarry Smith }
2128354c94deSBarry Smith 
2129ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2130d71ae5a4SJacob Faibussowitsch {
213199cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
213299cafbc1SBarry Smith 
213399cafbc1SBarry Smith   PetscFunctionBegin;
21349566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21359566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213799cafbc1SBarry Smith }
213899cafbc1SBarry Smith 
2139ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2140d71ae5a4SJacob Faibussowitsch {
214199cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214299cafbc1SBarry Smith 
214399cafbc1SBarry Smith   PetscFunctionBegin;
21449566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21459566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214799cafbc1SBarry Smith }
214899cafbc1SBarry Smith 
2149ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2150d71ae5a4SJacob Faibussowitsch {
2151c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2152475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2153475b8b61SHong Zhang   PetscScalar       *va, *vv;
2154475b8b61SHong Zhang   Vec                vB, vA;
2155475b8b61SHong Zhang   const PetscScalar *vb;
2156c91732d9SHong Zhang 
2157c91732d9SHong Zhang   PetscFunctionBegin;
21589566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
21599566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2160475b8b61SHong Zhang 
21619566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2162c91732d9SHong Zhang   if (idx) {
2163475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2164d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2165c91732d9SHong Zhang     }
2166c91732d9SHong Zhang   }
2167c91732d9SHong Zhang 
21689566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
21699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21709566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2171c91732d9SHong Zhang 
21729566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21739566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2174475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2175c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2176475b8b61SHong Zhang       vv[i] = vb[i];
2177c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2178475b8b61SHong Zhang     } else {
2179475b8b61SHong Zhang       vv[i] = va[i];
21809371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2181c91732d9SHong Zhang     }
2182c91732d9SHong Zhang   }
21839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21849566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21869566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21879566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2190c91732d9SHong Zhang }
2191c91732d9SHong Zhang 
2192eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2193eede4a3fSMark Adams {
2194eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2195eede4a3fSMark Adams   PetscInt    m = A->rmap->n;
2196eede4a3fSMark Adams   Vec         vB, vA;
2197eede4a3fSMark Adams 
2198eede4a3fSMark Adams   PetscFunctionBegin;
2199eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
2200eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2201eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
2202eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2203eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2204eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2205eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2206eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2207eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2208eede4a3fSMark Adams }
2209eede4a3fSMark Adams 
2210ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2211d71ae5a4SJacob Faibussowitsch {
2212f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2213f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2214f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2215f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2216f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2217f07e67edSHong Zhang   Vec                diagV, offdiagV;
2218ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2219ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2220f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2221f07e67edSHong Zhang   Mat                B = mat->B;
2222f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2223c87e5d42SMatthew Knepley 
2224c87e5d42SMatthew Knepley   PetscFunctionBegin;
2225f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2226f07e67edSHong Zhang   if (A->cmap->N == n) {
22279566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22289566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22299566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22309566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22319566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22323ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2233f07e67edSHong Zhang   } else if (n == 0) {
2234f07e67edSHong Zhang     if (m) {
22359566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22369371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22379371c9d4SSatish Balay         a[r] = 0.0;
22389371c9d4SSatish Balay         if (idx) idx[r] = -1;
22399371c9d4SSatish Balay       }
22409566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2241f07e67edSHong Zhang     }
22423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2243f07e67edSHong Zhang   }
2244f07e67edSHong Zhang 
22459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22469566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22479566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22489566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2249f07e67edSHong Zhang 
2250f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2252ce496241SStefano Zampini   ba = bav;
2253f07e67edSHong Zhang   bi = b->i;
2254f07e67edSHong Zhang   bj = b->j;
22559566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2256f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2257f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2258f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22599371c9d4SSatish Balay       offdiagA[r]   = *ba;
22609371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2261f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2262f07e67edSHong Zhang       offdiagA[r] = 0.0;
2263f07e67edSHong Zhang 
2264f07e67edSHong Zhang       /* Find first hole in the cmap */
2265f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2266f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2267f07e67edSHong Zhang         if (col > j && j < cstart) {
2268f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2269f07e67edSHong Zhang           break;
2270f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2271f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2272f07e67edSHong Zhang           break;
2273f07e67edSHong Zhang         }
2274f07e67edSHong Zhang       }
22754e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2276f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2277f07e67edSHong Zhang         if (ncols == 0) {
2278f07e67edSHong Zhang           if (cstart) {
2279f07e67edSHong Zhang             offdiagIdx[r] = 0;
2280f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2281f07e67edSHong Zhang         } else { /* ncols > 0 */
2282f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2283f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2284f07e67edSHong Zhang         }
2285f07e67edSHong Zhang       }
2286f07e67edSHong Zhang     }
2287f07e67edSHong Zhang 
2288f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22899371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22909371c9d4SSatish Balay         offdiagA[r]   = *ba;
22919371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22929371c9d4SSatish Balay       }
22939371c9d4SSatish Balay       ba++;
22949371c9d4SSatish Balay       bj++;
2295f07e67edSHong Zhang     }
2296f07e67edSHong Zhang   }
2297f07e67edSHong Zhang 
22989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
22999566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2300f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2301f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2302f07e67edSHong Zhang       a[r] = diagA[r];
2303f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2304f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2305f07e67edSHong Zhang       a[r] = diagA[r];
2306c87e5d42SMatthew Knepley       if (idx) {
2307f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2308f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2309f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2310f07e67edSHong Zhang       }
2311f07e67edSHong Zhang     } else {
2312f07e67edSHong Zhang       a[r] = offdiagA[r];
2313f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2314c87e5d42SMatthew Knepley     }
2315c87e5d42SMatthew Knepley   }
23169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2324c87e5d42SMatthew Knepley }
2325c87e5d42SMatthew Knepley 
2326ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2327d71ae5a4SJacob Faibussowitsch {
232803bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2329fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2330fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233103bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
233203bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
233303bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2334ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2335ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2336fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2337fa213d2fSHong Zhang   Mat                B = mat->B;
2338fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
233903bc72f1SMatthew Knepley 
234003bc72f1SMatthew Knepley   PetscFunctionBegin;
2341fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2342fa213d2fSHong Zhang   if (A->cmap->N == n) {
23439566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23449566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23459566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23469566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23479566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23483ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2349fa213d2fSHong Zhang   } else if (n == 0) {
2350fa213d2fSHong Zhang     if (m) {
23519566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23529371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23539371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23549371c9d4SSatish Balay         if (idx) idx[r] = -1;
23559371c9d4SSatish Balay       }
23569566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2357fa213d2fSHong Zhang     }
23583ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2359fa213d2fSHong Zhang   }
2360fa213d2fSHong Zhang 
23619566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23629566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23639566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23649566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2365fa213d2fSHong Zhang 
2366fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2368ce496241SStefano Zampini   ba = bav;
2369fa213d2fSHong Zhang   bi = b->i;
2370fa213d2fSHong Zhang   bj = b->j;
23719566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2372fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2373fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2374fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23759371c9d4SSatish Balay       offdiagA[r]   = *ba;
23769371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2377fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2378fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2379fa213d2fSHong Zhang 
2380fa213d2fSHong Zhang       /* Find first hole in the cmap */
2381fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2382fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2383fa213d2fSHong Zhang         if (col > j && j < cstart) {
2384fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2385fa213d2fSHong Zhang           break;
2386fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2387fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2388fa213d2fSHong Zhang           break;
2389fa213d2fSHong Zhang         }
2390fa213d2fSHong Zhang       }
23914e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2392fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2393fa213d2fSHong Zhang         if (ncols == 0) {
2394fa213d2fSHong Zhang           if (cstart) {
2395fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2396fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2397fa213d2fSHong Zhang         } else { /* ncols > 0 */
2398fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2399fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2400fa213d2fSHong Zhang         }
2401fa213d2fSHong Zhang       }
2402fa213d2fSHong Zhang     }
2403fa213d2fSHong Zhang 
2404fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24059371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24069371c9d4SSatish Balay         offdiagA[r]   = *ba;
24079371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24089371c9d4SSatish Balay       }
24099371c9d4SSatish Balay       ba++;
24109371c9d4SSatish Balay       bj++;
2411fa213d2fSHong Zhang     }
2412fa213d2fSHong Zhang   }
2413fa213d2fSHong Zhang 
24149566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24159566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2416fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2417fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241803bc72f1SMatthew Knepley       a[r] = diagA[r];
2419fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2420fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2421fa213d2fSHong Zhang       a[r] = diagA[r];
2422fa213d2fSHong Zhang       if (idx) {
2423fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
242403bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2425fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2426fa213d2fSHong Zhang       }
242703bc72f1SMatthew Knepley     } else {
242803bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2429fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243003bc72f1SMatthew Knepley     }
243103bc72f1SMatthew Knepley   }
24329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24339566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24349566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24359566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24369566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24389566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244003bc72f1SMatthew Knepley }
244103bc72f1SMatthew Knepley 
2442ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2443d71ae5a4SJacob Faibussowitsch {
2444c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24451a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24461a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2447c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2448c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2449c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2450ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2451ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24521a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24531a254869SHong Zhang   Mat                B = mat->B;
24541a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2455c87e5d42SMatthew Knepley 
2456c87e5d42SMatthew Knepley   PetscFunctionBegin;
24571a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24581a254869SHong Zhang   if (A->cmap->N == n) {
24599566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24609566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24619566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24629566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24643ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24651a254869SHong Zhang   } else if (n == 0) {
24661a254869SHong Zhang     if (m) {
24679566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24689371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24699371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24709371c9d4SSatish Balay         if (idx) idx[r] = -1;
24719371c9d4SSatish Balay       }
24729566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24731a254869SHong Zhang     }
24743ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24751a254869SHong Zhang   }
24761a254869SHong Zhang 
24779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24789566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24799566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24809566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24811a254869SHong Zhang 
24821a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2484ce496241SStefano Zampini   ba = bav;
24851a254869SHong Zhang   bi = b->i;
24861a254869SHong Zhang   bj = b->j;
24879566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24881a254869SHong Zhang   for (r = 0; r < m; r++) {
24891a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24901a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24919371c9d4SSatish Balay       offdiagA[r]   = *ba;
24929371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24931a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24941a254869SHong Zhang       offdiagA[r] = 0.0;
24951a254869SHong Zhang 
24961a254869SHong Zhang       /* Find first hole in the cmap */
24971a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24981a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
24991a254869SHong Zhang         if (col > j && j < cstart) {
25001a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25011a254869SHong Zhang           break;
25021a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25031a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25041a254869SHong Zhang           break;
25051a254869SHong Zhang         }
25061a254869SHong Zhang       }
25074e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25081a254869SHong Zhang         /* a hole is outside compressed Bcols */
25091a254869SHong Zhang         if (ncols == 0) {
25101a254869SHong Zhang           if (cstart) {
25111a254869SHong Zhang             offdiagIdx[r] = 0;
25121a254869SHong Zhang           } else offdiagIdx[r] = cend;
25131a254869SHong Zhang         } else { /* ncols > 0 */
25141a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25151a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25161a254869SHong Zhang         }
25171a254869SHong Zhang       }
25181a254869SHong Zhang     }
25191a254869SHong Zhang 
25201a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25219371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25229371c9d4SSatish Balay         offdiagA[r]   = *ba;
25239371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25249371c9d4SSatish Balay       }
25259371c9d4SSatish Balay       ba++;
25269371c9d4SSatish Balay       bj++;
25271a254869SHong Zhang     }
25281a254869SHong Zhang   }
25291a254869SHong Zhang 
25309566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25319566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25321a254869SHong Zhang   for (r = 0; r < m; ++r) {
25331a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2534c87e5d42SMatthew Knepley       a[r] = diagA[r];
25351a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25361a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25371a254869SHong Zhang       a[r] = diagA[r];
25381a254869SHong Zhang       if (idx) {
25391a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2540c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25411a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25421a254869SHong Zhang       }
2543c87e5d42SMatthew Knepley     } else {
2544c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25451a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2546c87e5d42SMatthew Knepley     }
2547c87e5d42SMatthew Knepley   }
25489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2556c87e5d42SMatthew Knepley }
2557c87e5d42SMatthew Knepley 
2558d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2559d71ae5a4SJacob Faibussowitsch {
2560f6d58c54SBarry Smith   Mat *dummy;
25615494a064SHong Zhang 
25625494a064SHong Zhang   PetscFunctionBegin;
25639566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2564f6d58c54SBarry Smith   *newmat = *dummy;
25659566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25675494a064SHong Zhang }
25685494a064SHong Zhang 
2569ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2570d71ae5a4SJacob Faibussowitsch {
2571bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2572bbead8a2SBarry Smith 
2573bbead8a2SBarry Smith   PetscFunctionBegin;
25749566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25757b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2577bbead8a2SBarry Smith }
2578bbead8a2SBarry Smith 
2579d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2580d71ae5a4SJacob Faibussowitsch {
258173a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
258273a71a0fSBarry Smith 
258373a71a0fSBarry Smith   PetscFunctionBegin;
258408401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25859566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2586679944adSJunchao Zhang   if (x->assembled) {
25879566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2588679944adSJunchao Zhang   } else {
25899566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2590679944adSJunchao Zhang   }
25919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259473a71a0fSBarry Smith }
2595bbead8a2SBarry Smith 
2596ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2597d71ae5a4SJacob Faibussowitsch {
2598b1b1104fSBarry Smith   PetscFunctionBegin;
2599b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2600b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2602b1b1104fSBarry Smith }
2603b1b1104fSBarry Smith 
2604b1b1104fSBarry Smith /*@
2605f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2606f2afee66SBarry Smith 
26072ef1f0ffSBarry Smith   Not Collective
2608f2afee66SBarry Smith 
2609f2afee66SBarry Smith   Input Parameter:
2610f2afee66SBarry Smith . A - the matrix
2611f2afee66SBarry Smith 
2612f2afee66SBarry Smith   Output Parameter:
2613f2afee66SBarry Smith . nz - the number of nonzeros
2614f2afee66SBarry Smith 
2615f2afee66SBarry Smith   Level: advanced
2616f2afee66SBarry Smith 
2617fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2618f2afee66SBarry Smith @*/
2619d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2620d71ae5a4SJacob Faibussowitsch {
2621f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2622f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2623dfebb78cSStefano Zampini   PetscBool   isaij;
2624f2afee66SBarry Smith 
2625f2afee66SBarry Smith   PetscFunctionBegin;
2626dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2627dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2628f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2630f2afee66SBarry Smith }
2631f2afee66SBarry Smith 
2632f2afee66SBarry Smith /*@
2633b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2634b1b1104fSBarry Smith 
2635c3339decSBarry Smith   Collective
2636b1b1104fSBarry Smith 
2637b1b1104fSBarry Smith   Input Parameters:
2638b1b1104fSBarry Smith + A  - the matrix
263911a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2640b1b1104fSBarry Smith 
264196a0c994SBarry Smith   Level: advanced
264296a0c994SBarry Smith 
2643fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2644b1b1104fSBarry Smith @*/
2645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2646d71ae5a4SJacob Faibussowitsch {
2647b1b1104fSBarry Smith   PetscFunctionBegin;
2648cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2650b1b1104fSBarry Smith }
2651b1b1104fSBarry Smith 
2652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2653d71ae5a4SJacob Faibussowitsch {
2654b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2655b1b1104fSBarry Smith 
2656b1b1104fSBarry Smith   PetscFunctionBegin;
2657d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2658b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26599566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26601baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2661d0609cedSBarry Smith   PetscOptionsHeadEnd();
26623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2663b1b1104fSBarry Smith }
2664b1b1104fSBarry Smith 
2665ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2666d71ae5a4SJacob Faibussowitsch {
26677d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2668c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26697d68702bSBarry Smith 
26707d68702bSBarry Smith   PetscFunctionBegin;
2671c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26729566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26735519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2674b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26759566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2676b83222d8SBarry Smith     aij->nonew = nonew;
26777d68702bSBarry Smith   }
26789566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26807d68702bSBarry Smith }
26817d68702bSBarry Smith 
2682ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2683d71ae5a4SJacob Faibussowitsch {
26843b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26853b49f96aSBarry Smith 
26863b49f96aSBarry Smith   PetscFunctionBegin;
268708401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26889566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26893b49f96aSBarry Smith   if (d) {
26903b49f96aSBarry Smith     PetscInt rstart;
26919566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26923b49f96aSBarry Smith     *d += rstart;
26933b49f96aSBarry Smith   }
26943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26953b49f96aSBarry Smith }
26963b49f96aSBarry Smith 
2697ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2698d71ae5a4SJacob Faibussowitsch {
2699a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2700a8ee9fb5SBarry Smith 
2701a8ee9fb5SBarry Smith   PetscFunctionBegin;
27029566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2704a8ee9fb5SBarry Smith }
27053b49f96aSBarry Smith 
270658c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2707dec0b466SHong Zhang {
2708dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2709dec0b466SHong Zhang 
2710dec0b466SHong Zhang   PetscFunctionBegin;
271158c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
271258c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2714dec0b466SHong Zhang }
2715dec0b466SHong Zhang 
2716cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2717cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2718cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2719cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272097304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27217c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27227c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2723f4259b30SLisandro Dalcin                                        NULL,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        NULL,
2726f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2727f4259b30SLisandro Dalcin                                        NULL,
2728f4259b30SLisandro Dalcin                                        NULL,
272941f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2730b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273197304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2732cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2733cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2734cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2735cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273697304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2737cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2738cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2739cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2740d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2741f4259b30SLisandro Dalcin                                        NULL,
2742f4259b30SLisandro Dalcin                                        NULL,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
274526cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2746f4259b30SLisandro Dalcin                                        NULL,
2747f4259b30SLisandro Dalcin                                        NULL,
2748a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
2753f4259b30SLisandro Dalcin                                        NULL,
2754f4259b30SLisandro Dalcin                                        NULL,
2755d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27567dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2757cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2758cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2759cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2760d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2761cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27627d68702bSBarry Smith                                        MatShift_MPIAIJ,
276399e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2764564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
276573a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27668a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27678a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2768f4259b30SLisandro Dalcin                                        NULL,
2769f4259b30SLisandro Dalcin                                        NULL,
277093dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2771f4259b30SLisandro Dalcin                                        NULL,
2772cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
277372e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2774f4259b30SLisandro Dalcin                                        NULL,
27757dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2776e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2777e03a110bSBarry Smith                                        MatView_MPIAIJ,
2778f4259b30SLisandro Dalcin                                        NULL,
2779f4259b30SLisandro Dalcin                                        NULL,
2780f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2781f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
2783f4259b30SLisandro Dalcin                                        NULL,
2784f4259b30SLisandro Dalcin                                        NULL,
2785d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2786c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        NULL,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
27913acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2792b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2793f4259b30SLisandro Dalcin                                        NULL,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2796f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27995bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28006cff0a6bSPierre Jolivet                                        NULL,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
2804f4259b30SLisandro Dalcin                                        NULL,
2805f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
280726be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2808f4259b30SLisandro Dalcin                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        NULL,
2814b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28154222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
28182fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282199cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
282269db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2823f4259b30SLisandro Dalcin                                        NULL,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2826f4259b30SLisandro Dalcin                                        NULL,
28275494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2828f4259b30SLisandro Dalcin                                        NULL,
28293b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2830d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2833f4259b30SLisandro Dalcin                                        NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
2835b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
2837f4259b30SLisandro Dalcin                                        NULL,
2838f4259b30SLisandro Dalcin                                        NULL,
2839b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2840f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2841a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2842bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2843a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28447dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2845f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847f4259b30SLisandro Dalcin                                        NULL,
2848187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2849f4259b30SLisandro Dalcin                                        NULL,
2850f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2851f4259b30SLisandro Dalcin                                        NULL,
2852f4259b30SLisandro Dalcin                                        NULL,
2853f4259b30SLisandro Dalcin                                        NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
285546533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2856f4259b30SLisandro Dalcin                                        NULL,
2857f4259b30SLisandro Dalcin                                        NULL,
28589c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2859a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28604222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2861f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286372833a62Smarkadams4                                        NULL,
286472833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28652d776b49SBarry Smith                                        NULL,
2866dec0b466SHong Zhang                                        /*150*/ NULL,
2867eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2868eede4a3fSMark Adams                                        MatGetRowSumAbs_MPIAIJ};
286936ce4990SBarry Smith 
2870ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2871d71ae5a4SJacob Faibussowitsch {
28722e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28732e8a6d31SBarry Smith 
28742e8a6d31SBarry Smith   PetscFunctionBegin;
28759566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28769566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28782e8a6d31SBarry Smith }
28792e8a6d31SBarry Smith 
2880ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2881d71ae5a4SJacob Faibussowitsch {
28822e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28832e8a6d31SBarry Smith 
28842e8a6d31SBarry Smith   PetscFunctionBegin;
28859566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28869566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28882e8a6d31SBarry Smith }
28898a729477SBarry Smith 
2890d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2891d71ae5a4SJacob Faibussowitsch {
2892ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28935d2a9ed1SStefano Zampini   PetscMPIInt size;
2894a23d5eceSKris Buschelman 
2895a23d5eceSKris Buschelman   PetscFunctionBegin;
2896ad79cf63SBarry Smith   if (B->hash_active) {
2897aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2898ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2899ad79cf63SBarry Smith   }
29009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2902899cda47SBarry Smith 
2903cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2904eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2905cb7b82ddSBarry Smith #else
29069566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2907cb7b82ddSBarry Smith #endif
29089566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29099566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29109566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2911cb7b82ddSBarry Smith 
29129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2913c508b908SBarry Smith 
2914c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29169566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29189566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29199566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2920c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2921cb7b82ddSBarry Smith 
2922c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2923ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29249566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29269566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29279566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2928c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2929899cda47SBarry Smith 
29309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2932526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2933cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293415001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2936a23d5eceSKris Buschelman }
2937a23d5eceSKris Buschelman 
2938ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2939d71ae5a4SJacob Faibussowitsch {
2940ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2941846b4da1SFande Kong 
2942846b4da1SFande Kong   PetscFunctionBegin;
2943846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29459566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2946846b4da1SFande Kong 
2947846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2948eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2949846b4da1SFande Kong #else
29509566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2951846b4da1SFande Kong #endif
29529566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29549566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2955846b4da1SFande Kong 
29569566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29579566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2958846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2959846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2960846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2962846b4da1SFande Kong }
2963846b4da1SFande Kong 
2964d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2965d71ae5a4SJacob Faibussowitsch {
2966d6dfbf8fSBarry Smith   Mat         mat;
2967416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2968d6dfbf8fSBarry Smith 
29693a40ed3dSBarry Smith   PetscFunctionBegin;
2970f4259b30SLisandro Dalcin   *newmat = NULL;
29719566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29729566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29739566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29749566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2975273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2976e1b6402fSHong Zhang 
2977d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2978501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2979e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2980d6dfbf8fSBarry Smith 
298117699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298217699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2983e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2984e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2985501880eeSStefano Zampini   a->rowindices   = NULL;
2986501880eeSStefano Zampini   a->rowvalues    = NULL;
2987bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2988d6dfbf8fSBarry Smith 
29899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2991420957c1SBarry Smith   if (matin->hash_active) {
2992420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2993420957c1SBarry Smith   } else {
2994420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29952ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2996aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2997eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2998b1fc9764SSatish Balay #else
29999566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30009566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3001b1fc9764SSatish Balay #endif
3002501880eeSStefano Zampini     } else a->colmap = NULL;
30033f41c07dSBarry Smith     if (oldmat->garray) {
3004b1d57f15SBarry Smith       PetscInt len;
3005d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30079566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3008501880eeSStefano Zampini     } else a->garray = NULL;
3009d6dfbf8fSBarry Smith 
30100de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30110de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30120de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3013aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3014aa624791SPierre Jolivet     if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
30159566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30169566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3017420957c1SBarry Smith   }
30189566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30198a729477SBarry Smith   *newmat = mat;
30203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30218a729477SBarry Smith }
3022416022c9SBarry Smith 
3023d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3024d71ae5a4SJacob Faibussowitsch {
302552f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
302652f91c60SVaclav Hapla 
302752f91c60SVaclav Hapla   PetscFunctionBegin;
302852f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
302952f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3030c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30319566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30339566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
303452f91c60SVaclav Hapla   if (isbinary) {
30359566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
303652f91c60SVaclav Hapla   } else if (ishdf5) {
303752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30389566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
303952f91c60SVaclav Hapla #else
304052f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304152f91c60SVaclav Hapla #endif
304252f91c60SVaclav Hapla   } else {
304398921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
304452f91c60SVaclav Hapla   }
30453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
304652f91c60SVaclav Hapla }
304752f91c60SVaclav Hapla 
3048d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3049d71ae5a4SJacob Faibussowitsch {
30503ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30513ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30523ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30538fb81238SShri Abhyankar 
30548fb81238SShri Abhyankar   PetscFunctionBegin;
30559566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30568fb81238SShri Abhyankar 
30573ea6fe3dSLisandro Dalcin   /* read in matrix header */
30589566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
305908401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30609371c9d4SSatish Balay   M  = header[1];
30619371c9d4SSatish Balay   N  = header[2];
30629371c9d4SSatish Balay   nz = header[3];
306308401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
306408401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
306508401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
306608ea439dSMark F. Adams 
30673ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30689566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30693ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30703ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30713ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30748fb81238SShri Abhyankar 
30753ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30769566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3077aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30788fb81238SShri Abhyankar 
30793ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30809566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30839371c9d4SSatish Balay   rowidxs[0] = 0;
30849371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
308538b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30861c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
308708401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
308838b83642SBarry Smith   }
308938b83642SBarry Smith 
30903ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30929566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30939566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30943ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30959566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30969566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30998fb81238SShri Abhyankar }
31008fb81238SShri Abhyankar 
31013782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3102ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3103d71ae5a4SJacob Faibussowitsch {
31044aa3045dSJed Brown   IS          iscol_local;
3105c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3106c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31073782ecc7SHong Zhang 
31083782ecc7SHong Zhang   PetscFunctionBegin;
31093782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31109566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31113782ecc7SHong Zhang 
3112c5e4d11fSDmitry Karpeev   if (isstride) {
3113c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31149566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31159566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31169566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3117c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3118c5e4d11fSDmitry Karpeev   }
31193782ecc7SHong Zhang 
31201c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3121c5e4d11fSDmitry Karpeev   if (gisstride) {
3122c5e4d11fSDmitry Karpeev     PetscInt N;
31239566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31249566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31259566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3127c5e4d11fSDmitry Karpeev   } else {
3128c5bfad50SMark F. Adams     PetscInt cbs;
31299566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31309566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31319566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3132b79d0421SJed Brown   }
31333782ecc7SHong Zhang 
31343782ecc7SHong Zhang   *isseq = iscol_local;
31353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3136c5e4d11fSDmitry Karpeev }
31378d2139bdSHong Zhang 
3138ddfdf956SHong Zhang /*
31399c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31409c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3141ddfdf956SHong Zhang 
3142ddfdf956SHong Zhang  Input Parameters:
314327430b45SBarry Smith +   mat - matrix
314427430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31459c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
314627430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3147ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
314827430b45SBarry Smith 
314927430b45SBarry Smith  Output Parameters:
315027430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315127430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315227430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315327430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3154ddfdf956SHong Zhang  */
3155ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3156d71ae5a4SJacob Faibussowitsch {
3157040216a4SHong Zhang   Vec             x, cmap;
3158040216a4SHong Zhang   const PetscInt *is_idx;
3159040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31609c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3161040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3162040216a4SHong Zhang   Mat             B    = a->B;
3163040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3164a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31658b3fa1f7SHong Zhang   MPI_Comm        comm;
31663a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31673782ecc7SHong Zhang 
31683782ecc7SHong Zhang   PetscFunctionBegin;
31699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31709566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31718b3fa1f7SHong Zhang 
3172ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31739566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31749566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31759566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31769566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31770a351717SHong Zhang 
31789c988bcaSHong Zhang   /* Get start indices */
31799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3180ddfdf956SHong Zhang   isstart -= ncols;
31819566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3182040216a4SHong Zhang 
31839566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31849566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31859566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3187ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31888b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3189ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31909c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31918b3fa1f7SHong Zhang   }
31929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31949566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31958b3fa1f7SHong Zhang 
31969c988bcaSHong Zhang   /* Get iscol_d */
31979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31989566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
31999566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3200feb78a15SHong Zhang 
32019c988bcaSHong Zhang   /* Get isrow_d */
32029566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3203feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32059566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32069c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32079566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3208feb78a15SHong Zhang 
32099566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32109566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32119566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3212feb78a15SHong Zhang 
32139c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32149566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32159566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3216ddfdf956SHong Zhang 
32179566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
321807250d77SHong Zhang 
32199566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32209566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322164efcef9SHong Zhang 
32229c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3223ddfdf956SHong Zhang   /* off-process column indices */
32249c988bcaSHong Zhang   count = 0;
32259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3227feb78a15SHong Zhang 
32289566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32299566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32308b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3231f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32329c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32331c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32341c645242SHong Zhang       count++;
32358b3fa1f7SHong Zhang     }
32368b3fa1f7SHong Zhang   }
32379566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32389566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
323907250d77SHong Zhang 
32409566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3241b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3242b6d9b4e0SHong Zhang 
32439566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32449c988bcaSHong Zhang   *garray = cmap1;
32459c988bcaSHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3250040216a4SHong Zhang }
3251040216a4SHong Zhang 
3252b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3254d71ae5a4SJacob Faibussowitsch {
3255b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32561fd43edeSHong Zhang   Mat         M = NULL;
32573b00a383SHong Zhang   MPI_Comm    comm;
3258b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32593b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3260b20e2604SHong Zhang   PetscInt    n;
32613b00a383SHong Zhang 
32623b00a383SHong Zhang   PetscFunctionBegin;
32639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32643b00a383SHong Zhang 
32653b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3266b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
326828b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32693b00a383SHong Zhang 
32709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327128b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32723b00a383SHong Zhang 
32739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
327428b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32753b00a383SHong Zhang 
3276b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3277b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32789566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32799566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328048a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32819566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32829566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32833b00a383SHong Zhang 
32843b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32859c988bcaSHong Zhang     const PetscInt *garray;
3286b20e2604SHong Zhang     PetscInt        BsubN;
32873b00a383SHong Zhang 
3288b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32899566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32903b00a383SHong Zhang 
3291b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32929566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32939566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32943b00a383SHong Zhang 
32959c988bcaSHong Zhang     /* Create submatrix M */
32969566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
32973b00a383SHong Zhang 
3298b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3299b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33007cfce09cSHong Zhang 
33019566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3302b20e2604SHong Zhang     n = asub->B->cmap->N;
3303b20e2604SHong Zhang     if (BsubN > n) {
3304c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33057cfce09cSHong Zhang       const PetscInt *idx;
33069c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33079566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33087cfce09cSHong Zhang 
33099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33107cfce09cSHong Zhang       j = 0;
33119566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3312b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33137cfce09cSHong Zhang         if (j >= BsubN) break;
33149c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33157cfce09cSHong Zhang 
33169c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33177cfce09cSHong Zhang           idx_new[i] = idx[j++];
331898921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33197cfce09cSHong Zhang       }
33209566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33217cfce09cSHong Zhang 
33229566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33239566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33247cfce09cSHong Zhang 
3325b20e2604SHong Zhang     } else if (BsubN < n) {
332698921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3327b20e2604SHong Zhang     }
33287cfce09cSHong Zhang 
33299566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3330b20e2604SHong Zhang     *submat = M;
33313b00a383SHong Zhang 
3332e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33353b00a383SHong Zhang 
33369566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33379566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33383b00a383SHong Zhang 
33399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33413b00a383SHong Zhang   }
33423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33433b00a383SHong Zhang }
33443b00a383SHong Zhang 
3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3346d71ae5a4SJacob Faibussowitsch {
33471358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33483782ecc7SHong Zhang   PetscInt  csize;
334918e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33504a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33513782ecc7SHong Zhang   MPI_Comm  comm;
33523782ecc7SHong Zhang 
33533782ecc7SHong Zhang   PetscFunctionBegin;
3354bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3355a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33568f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33579566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3358d5761cdaSHong Zhang     if (isrow_d) {
3359d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3360d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3361d5761cdaSHong Zhang     } else {
33629566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3363d5761cdaSHong Zhang       if (iscol_local) {
3364d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3365d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3366d5761cdaSHong Zhang       }
3367d5761cdaSHong Zhang     }
33688f69fa7bSHong Zhang   } else {
3369e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337018e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33719566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33723782ecc7SHong Zhang     if (!n) {
337318e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33743782ecc7SHong Zhang     } else {
33759566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33769566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3377ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33788f69fa7bSHong Zhang     }
33793782ecc7SHong Zhang 
3380e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338118e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33829566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
338318e627e3SHong Zhang     if (!n) {
338418e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
338518e627e3SHong Zhang     } else {
33869566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33879566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
338818e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
338918e627e3SHong Zhang     }
339018e627e3SHong Zhang 
33919566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33921c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
339318e627e3SHong Zhang     sameRowDist = tsameDist[0];
339418e627e3SHong Zhang   }
339518e627e3SHong Zhang 
339618e627e3SHong Zhang   if (sameRowDist) {
3397b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33983b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
33999566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34003ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3401b20e2604SHong Zhang     } else { /* sameRowDist */
34023b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34031358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34041358a193SHong Zhang         PetscBool sorted;
34059566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34069566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34079566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
340808401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34091358a193SHong Zhang 
34109566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34111358a193SHong Zhang         if (sorted) {
34121358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34139566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34143ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34153782ecc7SHong Zhang         }
34161358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
341748c0d076SHong Zhang         IS iscol_sub;
34189566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
341948c0d076SHong Zhang         if (iscol_sub) {
34209566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34213ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342248c0d076SHong Zhang         }
34231358a193SHong Zhang       }
34241358a193SHong Zhang     }
34251358a193SHong Zhang   }
34263782ecc7SHong Zhang 
3427bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34283782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343028b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34313782ecc7SHong Zhang   } else {
343248a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34331358a193SHong Zhang   }
34343782ecc7SHong Zhang 
34359566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34369566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34378f69fa7bSHong Zhang 
3438b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3441b79d0421SJed Brown   }
34423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34434aa3045dSJed Brown }
34444aa3045dSJed Brown 
3445feb78a15SHong Zhang /*@C
344611a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3447feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3448feb78a15SHong Zhang 
3449d083f849SBarry Smith   Collective
3450feb78a15SHong Zhang 
3451feb78a15SHong Zhang   Input Parameters:
3452feb78a15SHong Zhang + comm   - MPI communicator
3453feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3454b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34552ef1f0ffSBarry Smith - garray - global index of `B` columns
3456feb78a15SHong Zhang 
3457feb78a15SHong Zhang   Output Parameter:
34582ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
345927430b45SBarry Smith 
3460feb78a15SHong Zhang   Level: advanced
3461feb78a15SHong Zhang 
3462feb78a15SHong Zhang   Notes:
346311a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346411a5261eSBarry Smith 
34652ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3466feb78a15SHong Zhang 
34671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3468feb78a15SHong Zhang @*/
3469d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3470d71ae5a4SJacob Faibussowitsch {
3471feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3472e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3473a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3474ce496241SStefano Zampini   const PetscScalar *oa;
3475e489de8fSHong Zhang   Mat                Bnew;
3476feb78a15SHong Zhang   PetscInt           m, n, N;
34774ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3478feb78a15SHong Zhang 
3479feb78a15SHong Zhang   PetscFunctionBegin;
34809566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34819566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348208401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348337a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3484b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
348508401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3486feb78a15SHong Zhang 
3487e489de8fSHong Zhang   /* Get global columns of mat */
34881c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3489feb78a15SHong Zhang 
34909566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34914ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34924ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34934ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
34944ab4d6f4SRichard Tran Mills 
349537a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3496feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3497feb78a15SHong Zhang 
3498feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3499feb78a15SHong Zhang 
35009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3502feb78a15SHong Zhang 
3503e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3504feb78a15SHong Zhang   maij->A = A;
3505feb78a15SHong Zhang 
3506a5348796SHong Zhang   nz = oi[m];
3507a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3508a5348796SHong Zhang     col   = oj[i];
3509a5348796SHong Zhang     oj[i] = garray[col];
3510feb78a15SHong Zhang   }
3511feb78a15SHong Zhang 
3512e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35149566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3516e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3517e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3518e489de8fSHong Zhang   maij->B     = Bnew;
3519d5761cdaSHong Zhang 
352008401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3521d5761cdaSHong Zhang 
3522e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3523d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3524d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35259566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3526d5761cdaSHong Zhang 
3527e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3528e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3529e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3530feb78a15SHong Zhang 
3531a5348796SHong Zhang   /* condense columns of maij->B */
35329566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35359566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35369566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3538feb78a15SHong Zhang }
3539feb78a15SHong Zhang 
3540ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35414aa3045dSJed Brown 
3542d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3543d71ae5a4SJacob Faibussowitsch {
354498b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354585f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354698b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35471fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354898b658c4SHong Zhang   MatScalar      *aa;
354900e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3550a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355198b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355298b658c4SHong Zhang   IS              iscol_sub, iscmap;
355398b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355418e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3555a31a438cSHong Zhang   MPI_Comm        comm;
35567e2c5f70SBarry Smith 
3557a0ff6018SBarry Smith   PetscFunctionBegin;
35589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3559d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35609566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356128b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35629566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3563d5761cdaSHong Zhang 
35649566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356528b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3566d5761cdaSHong Zhang 
35679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356828b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3569d5761cdaSHong Zhang 
35709566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3571d5761cdaSHong Zhang 
3572d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35733b00a383SHong Zhang     PetscBool flg;
35743b00a383SHong Zhang 
35759566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35769566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3577bcae8d28SHong Zhang 
35783b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3579366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35809566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3581366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35821c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3583366a327dSHong Zhang     if (allcolumns) {
3584366a327dSHong Zhang       iscol_sub = iscol_local;
35859566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35869566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3587366a327dSHong Zhang 
35883b00a383SHong Zhang     } else {
35891358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3590244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35919566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35929566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35939566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35948d2139bdSHong Zhang       count = 0;
3595a31a438cSHong Zhang       k     = 0;
3596a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3597a31a438cSHong Zhang         j = is_idx[i];
3598a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3599a31a438cSHong Zhang           /* diagonal part of mat */
36008d2139bdSHong Zhang           idx[count]     = j;
3601366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36024a3daf6eSHong Zhang         } else if (Bn) {
3603a31a438cSHong Zhang           /* off-diagonal part of mat */
3604a31a438cSHong Zhang           if (j == garray[k]) {
36058d2139bdSHong Zhang             idx[count]     = j;
3606a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3607a31a438cSHong Zhang           } else if (j > garray[k]) {
3608a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3609a31a438cSHong Zhang             if (j == garray[k]) {
3610a31a438cSHong Zhang               idx[count]     = j;
3611a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36128d2139bdSHong Zhang             }
36138d2139bdSHong Zhang           }
36148d2139bdSHong Zhang         }
36158d2139bdSHong Zhang       }
36169566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36178d2139bdSHong Zhang 
36189566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36199566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36209566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3621b6d9b4e0SHong Zhang 
36229566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3623a31a438cSHong Zhang     }
36248b3fa1f7SHong Zhang 
36253b00a383SHong Zhang     /* (3) Create sequential Msub */
36269566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3627d5761cdaSHong Zhang   }
36288d2139bdSHong Zhang 
36299566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363098b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363198b658c4SHong Zhang   ii  = aij->i;
36329566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3633a0ff6018SBarry Smith 
3634a0ff6018SBarry Smith   /*
3635a0ff6018SBarry Smith       m - number of local rows
3636a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3637a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3638a0ff6018SBarry Smith   */
36399566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364098b658c4SHong Zhang 
36413b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36423b00a383SHong Zhang     /* (4) Create parallel newmat */
364398b658c4SHong Zhang     PetscMPIInt rank, size;
3644bcae8d28SHong Zhang     PetscInt    csize;
364598b658c4SHong Zhang 
36469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364800e6dbe6SBarry Smith 
3649a0ff6018SBarry Smith     /*
365000e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365100e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3652a0ff6018SBarry Smith     */
365300e6dbe6SBarry Smith 
365400e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36559566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36566a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36579566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3658a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3659e2c4fddaSBarry Smith         nlocal = m;
36606a6a5d1dSBarry Smith       } else {
3661a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3662ab50ec6bSBarry Smith       }
3663ab50ec6bSBarry Smith     } else {
36646a6a5d1dSBarry Smith       nlocal = csize;
36656a6a5d1dSBarry Smith     }
36669566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366700e6dbe6SBarry Smith     rstart = rend - nlocal;
3668aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
366900e6dbe6SBarry Smith 
367000e6dbe6SBarry Smith     /* next, compute all the lengths */
367198b658c4SHong Zhang     jj = aij->j;
36729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367300e6dbe6SBarry Smith     olens = dlens + m;
367400e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367500e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367600e6dbe6SBarry Smith       olen = 0;
367700e6dbe6SBarry Smith       dlen = 0;
367800e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
367915b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368000e6dbe6SBarry Smith         else dlen++;
368100e6dbe6SBarry Smith         jj++;
368200e6dbe6SBarry Smith       }
368300e6dbe6SBarry Smith       olens[i] = olen;
368400e6dbe6SBarry Smith       dlens[i] = dlen;
368500e6dbe6SBarry Smith     }
3686b6d9b4e0SHong Zhang 
36879566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36889566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
368998b658c4SHong Zhang 
36909566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36919566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36929566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36939566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36949566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36959566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3696d5761cdaSHong Zhang 
3697d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3698a0ff6018SBarry Smith     M = *newmat;
36999566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370008401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37019566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3702c48de900SBarry Smith     /*
3703c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3704c48de900SBarry Smith        rather than the slower MatSetValues().
3705c48de900SBarry Smith     */
3706c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3707c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3708a0ff6018SBarry Smith   }
3709548ecf4dSHong Zhang 
37103b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37129566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371398b658c4SHong Zhang 
371498b658c4SHong Zhang   jj = aij->j;
37159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3716a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3717a0ff6018SBarry Smith     row = rstart + i;
371800e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
371915b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37209566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37219371c9d4SSatish Balay     jj += nz;
37229371c9d4SSatish Balay     aa += nz;
3723a0ff6018SBarry Smith   }
37249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37259566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3726a0ff6018SBarry Smith 
37279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3729fee21e36SBarry Smith 
37309566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373198b658c4SHong Zhang 
373298b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3733fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37343b00a383SHong Zhang     *newmat = M;
3735f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37369566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373798b658c4SHong Zhang 
3738f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374098b658c4SHong Zhang 
3741f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3743bcae8d28SHong Zhang 
3744bcae8d28SHong Zhang     if (iscol_local) {
3745f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37469566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3747bcae8d28SHong Zhang     }
374898b658c4SHong Zhang   }
37493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3750a0ff6018SBarry Smith }
3751273d9f13SBarry Smith 
3752df40acb1SHong Zhang /*
3753df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3754df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3755df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3756df40acb1SHong Zhang 
375711a5261eSBarry Smith   This requires a sequential iscol with all indices.
3758df40acb1SHong Zhang */
3759d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3760d71ae5a4SJacob Faibussowitsch {
3761df40acb1SHong Zhang   PetscMPIInt rank, size;
3762df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3763df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3764df40acb1SHong Zhang   Mat         M, Mreuse;
376598b658c4SHong Zhang   MatScalar  *aa, *vwork;
3766df40acb1SHong Zhang   MPI_Comm    comm;
3767df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37680b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3769df40acb1SHong Zhang 
3770df40acb1SHong Zhang   PetscFunctionBegin;
37719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3774df40acb1SHong Zhang 
37750b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37769566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37779566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37780b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37791c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37800b27a90eSHong Zhang 
3781df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378328b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3785df40acb1SHong Zhang   } else {
37869566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3787df40acb1SHong Zhang   }
3788df40acb1SHong Zhang 
3789df40acb1SHong Zhang   /*
3790df40acb1SHong Zhang       m - number of local rows
3791df40acb1SHong Zhang       n - number of columns (same on all processors)
3792df40acb1SHong Zhang       rstart - first row in new global matrix generated
3793df40acb1SHong Zhang   */
37949566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37959566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3796df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3797df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3798df40acb1SHong Zhang     ii  = aij->i;
3799df40acb1SHong Zhang     jj  = aij->j;
3800df40acb1SHong Zhang 
3801df40acb1SHong Zhang     /*
3802df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3803df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3804df40acb1SHong Zhang     */
3805df40acb1SHong Zhang 
3806df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3807df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38089566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3809df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3810df40acb1SHong Zhang         nlocal = m;
3811df40acb1SHong Zhang       } else {
3812df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3813df40acb1SHong Zhang       }
3814df40acb1SHong Zhang     } else {
3815df40acb1SHong Zhang       nlocal = csize;
3816df40acb1SHong Zhang     }
38179566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3818df40acb1SHong Zhang     rstart = rend - nlocal;
3819aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3820df40acb1SHong Zhang 
3821df40acb1SHong Zhang     /* next, compute all the lengths */
38229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3823df40acb1SHong Zhang     olens = dlens + m;
3824df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3825df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3826df40acb1SHong Zhang       olen = 0;
3827df40acb1SHong Zhang       dlen = 0;
3828df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3829df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3830df40acb1SHong Zhang         else dlen++;
3831df40acb1SHong Zhang         jj++;
3832df40acb1SHong Zhang       }
3833df40acb1SHong Zhang       olens[i] = olen;
3834df40acb1SHong Zhang       dlens[i] = dlen;
3835df40acb1SHong Zhang     }
38369566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38379566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38389566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38399566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38409566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38419566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3842df40acb1SHong Zhang   } else {
3843df40acb1SHong Zhang     PetscInt ml, nl;
3844df40acb1SHong Zhang 
3845df40acb1SHong Zhang     M = *newmat;
38469566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384708401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38489566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3849df40acb1SHong Zhang     /*
3850df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3851df40acb1SHong Zhang        rather than the slower MatSetValues().
3852df40acb1SHong Zhang     */
3853df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3854df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3855df40acb1SHong Zhang   }
38569566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3857df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3858df40acb1SHong Zhang   ii  = aij->i;
3859df40acb1SHong Zhang   jj  = aij->j;
38602e5835c6SStefano Zampini 
38612e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38629566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3863df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3864df40acb1SHong Zhang     row   = rstart + i;
3865df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38669371c9d4SSatish Balay     cwork = jj;
38678e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38689371c9d4SSatish Balay     vwork = aa;
38698e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38709566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3871df40acb1SHong Zhang   }
38729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3873df40acb1SHong Zhang 
38749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3876df40acb1SHong Zhang   *newmat = M;
3877df40acb1SHong Zhang 
3878df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3879df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38809566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38819566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3882df40acb1SHong Zhang   }
38833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3884df40acb1SHong Zhang }
3885df40acb1SHong Zhang 
3886ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3887d71ae5a4SJacob Faibussowitsch {
38886a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3889899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3890ccd8e176SBarry Smith   const PetscInt *JJ;
3891eeb24464SBarry Smith   PetscBool       nooffprocentries;
38926a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3893ccd8e176SBarry Smith 
3894ccd8e176SBarry Smith   PetscFunctionBegin;
3895aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3896899cda47SBarry Smith 
38979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3899d0f46423SBarry Smith   m      = B->rmap->n;
3900d0f46423SBarry Smith   cstart = B->cmap->rstart;
3901d0f46423SBarry Smith   cend   = B->cmap->rend;
3902d0f46423SBarry Smith   rstart = B->rmap->rstart;
3903899cda47SBarry Smith 
39049566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3905ccd8e176SBarry Smith 
390676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39078f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3908ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39098e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
391008401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391108401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391208401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3913ecc77c7aSBarry Smith     }
391476bd3646SJed Brown   }
3915ecc77c7aSBarry Smith 
39168f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3917b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39188e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3919ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3920ccd8e176SBarry Smith     d       = 0;
39210daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39220daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3923ccd8e176SBarry Smith     }
3924ccd8e176SBarry Smith     d_nnz[i] = d;
3925ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3926ccd8e176SBarry Smith   }
39279566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39289566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3929ccd8e176SBarry Smith 
39308f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3931ccd8e176SBarry Smith     ii = i + rstart;
39328e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3933ccd8e176SBarry Smith   }
3934eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3935eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3938eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3939ccd8e176SBarry Smith 
39406a3d2595SBarry Smith   /* count number of entries below block diagonal */
39416a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39426a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39436a3d2595SBarry Smith   Aij->ld = ld;
39446a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39456a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39466a3d2595SBarry Smith     j   = 0;
3947ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39486a3d2595SBarry Smith     ld[i] = j;
3949720a2405SPierre Jolivet     if (J) J += nnz;
39506a3d2595SBarry Smith   }
39516a3d2595SBarry Smith 
39529566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3954ccd8e176SBarry Smith }
3955ccd8e176SBarry Smith 
39561eea217eSSatish Balay /*@
395711a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3958ccd8e176SBarry Smith   (the default parallel PETSc format).
3959ccd8e176SBarry Smith 
3960d083f849SBarry Smith   Collective
3961ccd8e176SBarry Smith 
3962ccd8e176SBarry Smith   Input Parameters:
3963a1661176SMatthew Knepley + B - the matrix
3964d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3965d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3966ccd8e176SBarry Smith - v - optional values in the matrix
3967ccd8e176SBarry Smith 
3968ccd8e176SBarry Smith   Level: developer
3969ccd8e176SBarry Smith 
397012251496SSatish Balay   Notes:
39712ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39722ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397311a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397412251496SSatish Balay 
39752ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397612251496SSatish Balay 
3977a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3978a4bd8bc0SBarry Smith 
3979a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3980a4bd8bc0SBarry Smith 
3981a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3982a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3983a4bd8bc0SBarry Smith 
398412251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398512251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3986c5e4d11fSDmitry Karpeev   as shown
398727430b45SBarry Smith .vb
398827430b45SBarry Smith         1 0 0
398927430b45SBarry Smith         2 0 3     P0
399027430b45SBarry Smith        -------
399127430b45SBarry Smith         4 5 6     P1
399227430b45SBarry Smith 
399327430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399427430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399527430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399627430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399727430b45SBarry Smith 
399827430b45SBarry Smith      Process1 [P1] rows_owned=[2]
399927430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400027430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400127430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400227430b45SBarry Smith .ve
400312251496SSatish Balay 
4004fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4005a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4006ccd8e176SBarry Smith @*/
4007d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4008d71ae5a4SJacob Faibussowitsch {
4009ccd8e176SBarry Smith   PetscFunctionBegin;
4010cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4012ccd8e176SBarry Smith }
4013ccd8e176SBarry Smith 
4014273d9f13SBarry Smith /*@C
401511a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4016273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4017273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401820f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4019273d9f13SBarry Smith 
4020d083f849SBarry Smith   Collective
4021273d9f13SBarry Smith 
4022273d9f13SBarry Smith   Input Parameters:
40231c4f3114SJed Brown + B     - the matrix
4024273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4025273d9f13SBarry Smith            (same value is used for all local rows)
4026273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4027273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40282ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4029273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40303287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40313287b5eaSJed Brown            the diagonal entry even if it is zero.
4032273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4033273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4034273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4035273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40362ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4037273d9f13SBarry Smith            structure. The size of this array is equal to the number
4038273d9f13SBarry Smith            of local rows, i.e 'm'.
4039273d9f13SBarry Smith 
40402920cce0SJacob Faibussowitsch   Example Usage:
404127430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404227430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404327430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404427430b45SBarry Smith   as follows
404527430b45SBarry Smith 
404627430b45SBarry Smith .vb
404727430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404827430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
404927430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405027430b45SBarry Smith     -------------------------------------
405127430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405227430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405327430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405427430b45SBarry Smith     -------------------------------------
405527430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405627430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405727430b45SBarry Smith .ve
405827430b45SBarry Smith 
405927430b45SBarry Smith   This can be represented as a collection of submatrices as
406027430b45SBarry Smith .vb
406127430b45SBarry Smith       A B C
406227430b45SBarry Smith       D E F
406327430b45SBarry Smith       G H I
406427430b45SBarry Smith .ve
406527430b45SBarry Smith 
406627430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406727430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406827430b45SBarry Smith 
406927430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407027430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407127430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407227430b45SBarry Smith 
407327430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407427430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407527430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407627430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407727430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
407827430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
407927430b45SBarry Smith 
408020f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408120f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408227430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408320f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
408427430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408520f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408627430b45SBarry Smith .vb
408727430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408827430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
408927430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409027430b45SBarry Smith .ve
409120f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409227430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409327430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409427430b45SBarry Smith   34 values.
409527430b45SBarry Smith 
409620f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409727430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409820f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
409927430b45SBarry Smith .vb
410027430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410127430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410227430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410327430b45SBarry Smith .ve
410427430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410527430b45SBarry Smith   hence pre-allocation is perfect.
410627430b45SBarry Smith 
410727430b45SBarry Smith   Level: intermediate
410827430b45SBarry Smith 
410927430b45SBarry Smith   Notes:
411049a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411149a6f317SBarry Smith 
411227430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41130598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4114651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4115273d9f13SBarry Smith 
4116273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4117273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4118273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4119273d9f13SBarry Smith 
4120273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4121a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4122a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4123a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4124a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4125a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4126a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4127a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4128a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4129273d9f13SBarry Smith 
41302ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4131273d9f13SBarry Smith 
413227430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4133aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413427430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4135aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4136aa95bbe8SBarry Smith 
41371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4138a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4139273d9f13SBarry Smith @*/
4140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4141d71ae5a4SJacob Faibussowitsch {
4142273d9f13SBarry Smith   PetscFunctionBegin;
41436ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41446ba663aaSJed Brown   PetscValidType(B, 1);
4145cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4147273d9f13SBarry Smith }
4148273d9f13SBarry Smith 
414958d36128SBarry Smith /*@
415011a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41518f8f2f0dSBarry Smith   CSR format for the local rows.
41522fb0ec9aSBarry Smith 
4153d083f849SBarry Smith   Collective
41542fb0ec9aSBarry Smith 
41552fb0ec9aSBarry Smith   Input Parameters:
41562fb0ec9aSBarry Smith + comm - MPI communicator
415711a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41582fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4159d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4160d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4161d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4162d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41635693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41645693b835SJunchao Zhang . j    - global column indices
4165f1f2ae84SBarry Smith - a    - optional matrix values
41662fb0ec9aSBarry Smith 
41672fb0ec9aSBarry Smith   Output Parameter:
41682fb0ec9aSBarry Smith . mat - the matrix
416903bfb495SBarry Smith 
41702fb0ec9aSBarry Smith   Level: intermediate
41712fb0ec9aSBarry Smith 
41722fb0ec9aSBarry Smith   Notes:
41732ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4174d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4175d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41762fb0ec9aSBarry Smith 
41772ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417812251496SSatish Balay 
41795693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4180a4bd8bc0SBarry Smith 
41815693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4182a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4183a4bd8bc0SBarry Smith 
418412251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4185d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4186c5e4d11fSDmitry Karpeev   as shown
41872ef1f0ffSBarry Smith .vb
41882ef1f0ffSBarry Smith         1 0 0
41892ef1f0ffSBarry Smith         2 0 3     P0
41902ef1f0ffSBarry Smith        -------
41912ef1f0ffSBarry Smith         4 5 6     P1
41928f8f2f0dSBarry Smith 
41932ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41942ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41952ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41962ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41972fb0ec9aSBarry Smith 
41982ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41992ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42002ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42012ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42022ef1f0ffSBarry Smith .ve
42032ef1f0ffSBarry Smith 
4204d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42055693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42062fb0ec9aSBarry Smith @*/
4207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4208d71ae5a4SJacob Faibussowitsch {
42092fb0ec9aSBarry Smith   PetscFunctionBegin;
421008401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42129566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42149566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42159566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42169566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42182fb0ec9aSBarry Smith }
42192fb0ec9aSBarry Smith 
42208f8f2f0dSBarry Smith /*@
422111a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42222ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42232ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42246a3d2595SBarry Smith 
42256a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42268f8f2f0dSBarry Smith 
42278f8f2f0dSBarry Smith   Collective
42288f8f2f0dSBarry Smith 
42298f8f2f0dSBarry Smith   Input Parameters:
42308f8f2f0dSBarry Smith + mat - the matrix
423111a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42328f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423311a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42348f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423511a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423611a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42378f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42388f8f2f0dSBarry Smith . J   - column indices
42398f8f2f0dSBarry Smith - v   - matrix values
42408f8f2f0dSBarry Smith 
42412ef1f0ffSBarry Smith   Level: deprecated
42428f8f2f0dSBarry Smith 
42431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4244a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42458f8f2f0dSBarry Smith @*/
4246d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4247d71ae5a4SJacob Faibussowitsch {
42486a3d2595SBarry Smith   PetscInt        nnz, i;
42498f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42508f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4251fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4252fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42538f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42546a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42556a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42568f8f2f0dSBarry Smith 
42578f8f2f0dSBarry Smith   PetscFunctionBegin;
4258aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
425908401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426008401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426108401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42628f8f2f0dSBarry Smith 
42639566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42658f8f2f0dSBarry Smith 
42668f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42674c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42684c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42694c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42704c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42714c17f1ccSBarry Smith       }
42724c17f1ccSBarry Smith     }
42738f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42748f8f2f0dSBarry Smith     Iii = Ii[i];
42758f8f2f0dSBarry Smith     ldi = ld[i];
42768f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42779566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42789566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42799566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42808f8f2f0dSBarry Smith     ad += md;
42818f8f2f0dSBarry Smith     ao += nnz - md;
42828f8f2f0dSBarry Smith   }
42838f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42848f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42879566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42889566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42899566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42928f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42948f8f2f0dSBarry Smith }
42958f8f2f0dSBarry Smith 
42966a3d2595SBarry Smith /*@
429711a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42986a3d2595SBarry Smith 
42996a3d2595SBarry Smith   Collective
43006a3d2595SBarry Smith 
43016a3d2595SBarry Smith   Input Parameters:
43026a3d2595SBarry Smith + mat - the matrix
43036a3d2595SBarry Smith - v   - matrix values, stored by row
43046a3d2595SBarry Smith 
43056a3d2595SBarry Smith   Level: intermediate
43066a3d2595SBarry Smith 
4307a4bd8bc0SBarry Smith   Notes:
43086a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43096a3d2595SBarry Smith 
4310a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4311a4bd8bc0SBarry Smith 
43121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4313a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43146a3d2595SBarry Smith @*/
4315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4316d71ae5a4SJacob Faibussowitsch {
43176a3d2595SBarry Smith   PetscInt        nnz, i, m;
43186a3d2595SBarry Smith   PetscBool       nooffprocentries;
43196a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43206a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43216a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43226a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43236a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43246a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43256a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43266a3d2595SBarry Smith 
43276a3d2595SBarry Smith   PetscFunctionBegin;
43286a3d2595SBarry Smith   m = mat->rmap->n;
43296a3d2595SBarry Smith 
43306a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43316a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43326a3d2595SBarry Smith   Iii = 0;
43336a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43346a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43356a3d2595SBarry Smith     ldi = ld[i];
43366a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43376a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43386a3d2595SBarry Smith     ad += md;
4339810441c8SPierre Jolivet     if (ao) {
4340810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4341810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43426a3d2595SBarry Smith       ao += nnz - md;
4343810441c8SPierre Jolivet     }
43446a3d2595SBarry Smith     Iii += nnz;
43456a3d2595SBarry Smith   }
43466a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43476a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43486a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43496a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43506a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43516a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43526a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43536a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43546a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43556a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43576a3d2595SBarry Smith }
43586a3d2595SBarry Smith 
4359273d9f13SBarry Smith /*@C
436011a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4361273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4362273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43632ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4364273d9f13SBarry Smith 
4365d083f849SBarry Smith   Collective
4366273d9f13SBarry Smith 
4367273d9f13SBarry Smith   Input Parameters:
4368273d9f13SBarry Smith + comm  - MPI communicator
436911a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4370273d9f13SBarry Smith            This value should be the same as the local size used in creating the
4371273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
4372273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437345f401ebSJose E. Roman        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4374273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
437511a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437611a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4377273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4378273d9f13SBarry Smith            (same value is used for all local rows)
4379273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4380273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
43812ef1f0ffSBarry Smith            or `NULL`, if `d_nz` is used to specify the nonzero structure.
4382273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
4383273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4384273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4385273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4386273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
43872ef1f0ffSBarry Smith            each row) or `NULL`, if `o_nz` is used to specify the nonzero
4388273d9f13SBarry Smith            structure. The size of this array is equal to the number
4389273d9f13SBarry Smith            of local rows, i.e 'm'.
4390273d9f13SBarry Smith 
4391273d9f13SBarry Smith   Output Parameter:
4392273d9f13SBarry Smith . A - the matrix
4393273d9f13SBarry Smith 
439427430b45SBarry Smith   Options Database Keys:
439527430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439627430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
439827430b45SBarry Smith         See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix.
439927430b45SBarry Smith         Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440027430b45SBarry Smith 
44012ef1f0ffSBarry Smith   Level: intermediate
44022ef1f0ffSBarry Smith 
440327430b45SBarry Smith   Notes:
440477433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4405f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440611a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4407175b88e8SBarry Smith 
440849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
440949a6f317SBarry Smith 
44102ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44112ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4412273d9f13SBarry Smith   storage requirements for this matrix.
4413273d9f13SBarry Smith 
441411a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4415273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4416273d9f13SBarry Smith   that argument.
4417273d9f13SBarry Smith 
4418273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4419273d9f13SBarry Smith   (possibly both).
4420273d9f13SBarry Smith 
442133a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
442233a7c187SSatish Balay   first m0 rows belong to process 0, the next m1 rows belong to
442333a7c187SSatish Balay   process 1, the next m2 rows belong to process 2 etc.. where
442433a7c187SSatish Balay   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
442533a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4426273d9f13SBarry Smith 
442733a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
442833a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4429df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443033a7c187SSatish Balay 
443133a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443233a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443333a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443433a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443533a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443633a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
443733a7c187SSatish Balay   illustrates this concept.
443833a7c187SSatish Balay 
443933a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444033a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444133a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444233a7c187SSatish Balay   local matrix (a rectangular submatrix).
4443273d9f13SBarry Smith 
44442ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4445273d9f13SBarry Smith 
444697d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44472ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4448da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4449da57b5cdSKarl Rupp .vb
44502ef1f0ffSBarry Smith   MatCreate(..., &A);
44512ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44522ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44532ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4454da57b5cdSKarl Rupp .ve
445597d05335SKris Buschelman 
4456273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4457273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4458273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4459273d9f13SBarry Smith 
44602920cce0SJacob Faibussowitsch   Example Usage:
4461273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4462273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4463273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4464efc377ccSKarl Rupp   as follows
4465273d9f13SBarry Smith 
4466273d9f13SBarry Smith .vb
4467273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4468273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4469273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4470273d9f13SBarry Smith     -------------------------------------
4471273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4472273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4473273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4474273d9f13SBarry Smith     -------------------------------------
4475273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4476273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4477273d9f13SBarry Smith .ve
4478273d9f13SBarry Smith 
4479da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4480273d9f13SBarry Smith 
4481273d9f13SBarry Smith .vb
4482273d9f13SBarry Smith       A B C
4483273d9f13SBarry Smith       D E F
4484273d9f13SBarry Smith       G H I
4485273d9f13SBarry Smith .ve
4486273d9f13SBarry Smith 
4487273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4488273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4489273d9f13SBarry Smith 
4490273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4491273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4492273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4493273d9f13SBarry Smith 
4494273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4495273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4496273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4497273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
449827430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4499273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4500273d9f13SBarry Smith 
45012ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45022ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4503273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45042ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4505273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45062ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4507273d9f13SBarry Smith .vb
450827430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
450927430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451027430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4511273d9f13SBarry Smith .ve
45122ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4513273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4514273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4515273d9f13SBarry Smith   34 values.
4516273d9f13SBarry Smith 
45172ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4518a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4519da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4520273d9f13SBarry Smith .vb
452127430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452227430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452327430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4524273d9f13SBarry Smith .ve
4525273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4526273d9f13SBarry Smith   hence pre-allocation is perfect.
4527273d9f13SBarry Smith 
45281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4529db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`
4530273d9f13SBarry Smith @*/
4531d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4532d71ae5a4SJacob Faibussowitsch {
4533b1d57f15SBarry Smith   PetscMPIInt size;
4534273d9f13SBarry Smith 
4535273d9f13SBarry Smith   PetscFunctionBegin;
45369566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4539273d9f13SBarry Smith   if (size > 1) {
45409566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45419566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4542273d9f13SBarry Smith   } else {
45439566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45449566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4545273d9f13SBarry Smith   }
45463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4547273d9f13SBarry Smith }
4548195d93cdSBarry Smith 
45490b98dbb4SBarry Smith /*MC
45500b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45510b98dbb4SBarry Smith 
45520b98dbb4SBarry Smith     Synopsis:
45530b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45540b98dbb4SBarry Smith 
45550b98dbb4SBarry Smith     Not Collective
45560b98dbb4SBarry Smith 
45570b98dbb4SBarry Smith     Input Parameter:
45580b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45590b98dbb4SBarry Smith 
45600b98dbb4SBarry Smith     Output Parameters:
45610b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45624cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45632ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45640b98dbb4SBarry Smith -   ierr - error code
45650b98dbb4SBarry Smith 
45660b98dbb4SBarry Smith      Level: advanced
45670b98dbb4SBarry Smith 
45680b98dbb4SBarry Smith     Note:
45690b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45700b98dbb4SBarry Smith 
45711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45720b98dbb4SBarry Smith M*/
45730b98dbb4SBarry Smith 
45740b98dbb4SBarry Smith /*MC
45750b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45760b98dbb4SBarry Smith 
45770b98dbb4SBarry Smith     Synopsis:
45780b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45790b98dbb4SBarry Smith 
45800b98dbb4SBarry Smith     Not Collective
45810b98dbb4SBarry Smith 
45820b98dbb4SBarry Smith     Input Parameters:
45830b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45840b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45854cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45862ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45870b98dbb4SBarry Smith -   ierr - error code
45880b98dbb4SBarry Smith 
45890b98dbb4SBarry Smith      Level: advanced
45900b98dbb4SBarry Smith 
45911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45920b98dbb4SBarry Smith M*/
45930b98dbb4SBarry Smith 
4594127ca0efSMatthew Knepley /*@C
45950ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4596127ca0efSMatthew Knepley 
45972ef1f0ffSBarry Smith   Not Collective
4598127ca0efSMatthew Knepley 
4599127ca0efSMatthew Knepley   Input Parameter:
460011a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4601127ca0efSMatthew Knepley 
4602127ca0efSMatthew Knepley   Output Parameters:
460311a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
460411a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46052ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4606127ca0efSMatthew Knepley 
46070ab4885dSBarry Smith   Level: intermediate
46080ab4885dSBarry Smith 
460911a5261eSBarry Smith   Note:
46102ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46112ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46122ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4613127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4614127ca0efSMatthew Knepley 
4615fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46160ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4617127ca0efSMatthew Knepley 
4618fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4619127ca0efSMatthew Knepley @*/
4620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4621d71ae5a4SJacob Faibussowitsch {
4622195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
462304cf37c7SBarry Smith   PetscBool   flg;
4624b1d57f15SBarry Smith 
4625195d93cdSBarry Smith   PetscFunctionBegin;
46269566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
462728b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
462821e72a00SBarry Smith   if (Ad) *Ad = a->A;
462921e72a00SBarry Smith   if (Ao) *Ao = a->B;
463021e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4632195d93cdSBarry Smith }
4633a2243be0SBarry Smith 
4634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4635d71ae5a4SJacob Faibussowitsch {
4636110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46379b8102ccSHong Zhang   PetscInt    *indx;
4638110bb6e1SHong Zhang   PetscScalar *values;
4639421ddf4dSJunchao Zhang   MatType      rootType;
46409b8102ccSHong Zhang 
46419b8102ccSHong Zhang   PetscFunctionBegin;
46429566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4643110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4644110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4645110bb6e1SHong Zhang 
464648a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4647a22543b6SHong Zhang     /* Check sum(n) = N */
46481c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
464908401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4650a22543b6SHong Zhang 
46519566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46529b8102ccSHong Zhang     rstart -= m;
46539b8102ccSHong Zhang 
4654d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46559b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46569566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46579566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46589566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46599b8102ccSHong Zhang     }
46609b8102ccSHong Zhang 
46619566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46629566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46639566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46649566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46659566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46669566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46679566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46689566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4669d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46719b8102ccSHong Zhang   }
46729b8102ccSHong Zhang 
4673110bb6e1SHong Zhang   /* numeric phase */
46749566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46759b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46769566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46779b8102ccSHong Zhang     Ii = i + rstart;
46789566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46799566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46809b8102ccSHong Zhang   }
46819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4684c5d6d63eSBarry Smith }
4685c5d6d63eSBarry Smith 
4686d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4687d71ae5a4SJacob Faibussowitsch {
46886718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
468951a7d1a8SHong Zhang 
469051a7d1a8SHong Zhang   PetscFunctionBegin;
46913ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46929566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46939566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46949566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46959566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46969566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46979566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46989566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46999566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
470751a7d1a8SHong Zhang }
470851a7d1a8SHong Zhang 
4709c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4710c6db04a5SJed Brown #include <petscbt.h>
47114ebed01fSBarry Smith 
4712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4713d71ae5a4SJacob Faibussowitsch {
4714ce94432eSBarry Smith   MPI_Comm             comm;
471555d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4716b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4717a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4718b1d57f15SBarry Smith   PetscInt             proc, m;
4719b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4720b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4721b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
472255d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
472355d1abb9SHong Zhang   MPI_Status          *status;
4724fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4725dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
472655d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4727776b82aeSLisandro Dalcin   PetscContainer       container;
472855d1abb9SHong Zhang 
472955d1abb9SHong Zhang   PetscFunctionBegin;
47309566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47323c2c1871SHong Zhang 
47339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
473555d1abb9SHong Zhang 
47369566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
473728b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47389566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4740fff043a9SJunchao Zhang   aa = a_a;
4741bf0cc555SLisandro Dalcin 
474255d1abb9SHong Zhang   bi     = merge->bi;
474355d1abb9SHong Zhang   bj     = merge->bj;
474455d1abb9SHong Zhang   buf_ri = merge->buf_ri;
474555d1abb9SHong Zhang   buf_rj = merge->buf_rj;
474655d1abb9SHong Zhang 
47479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47487a2fc3feSBarry Smith   owners = merge->rowmap->range;
474955d1abb9SHong Zhang   len_s  = merge->len_s;
475055d1abb9SHong Zhang 
475155d1abb9SHong Zhang   /* send and recv matrix values */
47529566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47539566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
475455d1abb9SHong Zhang 
47559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
475655d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
475755d1abb9SHong Zhang     if (!len_s[proc]) continue;
475855d1abb9SHong Zhang     i = owners[proc];
47599566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476055d1abb9SHong Zhang     k++;
476155d1abb9SHong Zhang   }
476255d1abb9SHong Zhang 
47639566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47649566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47659566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
476655d1abb9SHong Zhang 
47679566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47689566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
476955d1abb9SHong Zhang 
477055d1abb9SHong Zhang   /* insert mat values of mpimat */
47719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
477355d1abb9SHong Zhang 
477455d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
477555d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4776f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
477755d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4778a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
477955d1abb9SHong Zhang   }
478055d1abb9SHong Zhang 
478155d1abb9SHong Zhang   /* set values of ba */
47827a2fc3feSBarry Smith   m = merge->rowmap->n;
478355d1abb9SHong Zhang   for (i = 0; i < m; i++) {
478455d1abb9SHong Zhang     arow = owners[rank] + i;
478555d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
478655d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47879566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
478855d1abb9SHong Zhang 
478955d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479055d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479155d1abb9SHong Zhang     aj     = a->j + ai[arow];
4792fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
479355d1abb9SHong Zhang     nextaj = 0;
479455d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
479555d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
479655d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
479755d1abb9SHong Zhang       }
479855d1abb9SHong Zhang     }
479955d1abb9SHong Zhang 
480055d1abb9SHong Zhang     /* add received vals into ba */
480155d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
480255d1abb9SHong Zhang       /* i-th row */
480355d1abb9SHong Zhang       if (i == *nextrow[k]) {
480455d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4805f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4806f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
480755d1abb9SHong Zhang         nextaj = 0;
480855d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
480955d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481055d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481155d1abb9SHong Zhang           }
481255d1abb9SHong Zhang         }
48139371c9d4SSatish Balay         nextrow[k]++;
48149371c9d4SSatish Balay         nextai[k]++;
481555d1abb9SHong Zhang       }
481655d1abb9SHong Zhang     }
48179566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
481855d1abb9SHong Zhang   }
48199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48209566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48219566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
482255d1abb9SHong Zhang 
48239566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48249566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48259566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48269566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48279566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482955d1abb9SHong Zhang }
483038f152feSBarry Smith 
4831d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4832d71ae5a4SJacob Faibussowitsch {
483355a3bba9SHong Zhang   Mat                  B_mpi;
4834c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4835b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4836b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4837d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4838a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4839c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4840b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484155d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
484258cb9c82SHong Zhang   MPI_Status          *status;
48430298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4844be0fcf8dSHong Zhang   PetscBT              lnkbt;
484551a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4846776b82aeSLisandro Dalcin   PetscContainer       container;
484702c68681SHong Zhang 
4848e5f2cdd8SHong Zhang   PetscFunctionBegin;
48499566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48503c2c1871SHong Zhang 
485138f152feSBarry Smith   /* make sure it is a PETSc comm */
48529566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
485555d1abb9SHong Zhang 
48569566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4858e5f2cdd8SHong Zhang 
48596abd8857SHong Zhang   /* determine row ownership */
48609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48649566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
486755d1abb9SHong Zhang 
48687a2fc3feSBarry Smith   m      = merge->rowmap->n;
48697a2fc3feSBarry Smith   owners = merge->rowmap->range;
48706abd8857SHong Zhang 
48716abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48723e06a4e6SHong Zhang   len_s = merge->len_s;
487351a7d1a8SHong Zhang 
48742257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4875c2234fe3SHong Zhang   merge->nsend = 0;
4876409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48772257cef7SHong Zhang     len_si[proc] = 0;
48783e06a4e6SHong Zhang     if (proc == rank) {
48796abd8857SHong Zhang       len_s[proc] = 0;
48803e06a4e6SHong Zhang     } else {
488102c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48823e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48833e06a4e6SHong Zhang     }
48843e06a4e6SHong Zhang     if (len_s[proc]) {
4885c2234fe3SHong Zhang       merge->nsend++;
48862257cef7SHong Zhang       nrows = 0;
48872257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48882257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48892257cef7SHong Zhang       }
48902257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48912257cef7SHong Zhang       len += len_si[proc];
4892409913e3SHong Zhang     }
489358cb9c82SHong Zhang   }
4894409913e3SHong Zhang 
48952257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48969566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48979566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4898671beff6SHong Zhang 
48993e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49009566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49019566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
490202c68681SHong Zhang 
49033e06a4e6SHong Zhang   /* post the Isend of j-structure */
49049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49053e06a4e6SHong Zhang 
49062257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4907409913e3SHong Zhang     if (!len_s[proc]) continue;
490802c68681SHong Zhang     i = owners[proc];
49099566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491051a7d1a8SHong Zhang     k++;
491151a7d1a8SHong Zhang   }
491251a7d1a8SHong Zhang 
49133e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49149566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49159566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
491602c68681SHong Zhang 
491702c68681SHong Zhang   /* send and recv i-structure */
49189566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49199566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492002c68681SHong Zhang 
49219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49223e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49232257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
492402c68681SHong Zhang     if (!len_s[proc]) continue;
49253e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49263e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49273e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49283e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49293e06a4e6SHong Zhang     */
49302257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49313e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49323e06a4e6SHong Zhang     buf_si[0]   = nrows;
49333e06a4e6SHong Zhang     buf_si_i[0] = 0;
49343e06a4e6SHong Zhang     nrows       = 0;
49353e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49363e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49373e06a4e6SHong Zhang       if (anzi) {
49383e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49393e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49403e06a4e6SHong Zhang         nrows++;
49413e06a4e6SHong Zhang       }
49423e06a4e6SHong Zhang     }
49439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
494402c68681SHong Zhang     k++;
49452257cef7SHong Zhang     buf_si += len_si[proc];
494602c68681SHong Zhang   }
49472257cef7SHong Zhang 
49489566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49499566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495002c68681SHong Zhang 
49519566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
495248a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49533e06a4e6SHong Zhang 
49549566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49559566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49569566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49579566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49589566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49599566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49609566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496158cb9c82SHong Zhang 
4962bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
496358cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
496558cb9c82SHong Zhang   bi[0] = 0;
496658cb9c82SHong Zhang 
4967be0fcf8dSHong Zhang   /* create and initialize a linked list */
4968be0fcf8dSHong Zhang   nlnk = N + 1;
49699566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497058cb9c82SHong Zhang 
4971bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4972bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49739566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49742205254eSKarl Rupp 
497558cb9c82SHong Zhang   current_space = free_space;
497658cb9c82SHong Zhang 
4977bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49791d79065fSBarry Smith 
49803e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49812257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49823e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49833e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4984a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49853e06a4e6SHong Zhang   }
49862257cef7SHong Zhang 
4987d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4988bcc1bcd5SHong Zhang   len = 0;
498958cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499058cb9c82SHong Zhang     bnzi = 0;
499158cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
499258cb9c82SHong Zhang     arow = owners[rank] + i;
499358cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
499458cb9c82SHong Zhang     aj   = a->j + ai[arow];
49959566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
499658cb9c82SHong Zhang     bnzi += nlnk;
499758cb9c82SHong Zhang     /* add received col data into lnk */
499851a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
499955d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50003e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50013e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50029566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50033e06a4e6SHong Zhang         bnzi += nlnk;
50049371c9d4SSatish Balay         nextrow[k]++;
50059371c9d4SSatish Balay         nextai[k]++;
50063e06a4e6SHong Zhang       }
500758cb9c82SHong Zhang     }
5008bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
500958cb9c82SHong Zhang 
501058cb9c82SHong Zhang     /* if free space is not available, make more free space */
501148a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
501258cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50139566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50149566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5015bcc1bcd5SHong Zhang 
501658cb9c82SHong Zhang     current_space->array += bnzi;
501758cb9c82SHong Zhang     current_space->local_used += bnzi;
501858cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
501958cb9c82SHong Zhang 
502058cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502158cb9c82SHong Zhang   }
5022bcc1bcd5SHong Zhang 
50239566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5024bcc1bcd5SHong Zhang 
50259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50269566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50279566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5028409913e3SHong Zhang 
5029bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50309566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50319566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
503254b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50339566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
503454b84b50SHong Zhang   } else {
50359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
503654b84b50SHong Zhang   }
50379566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50389566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50399566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5040d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
504258cb9c82SHong Zhang 
504390431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50446abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5045affca5deSHong Zhang   merge->bi        = bi;
5046affca5deSHong Zhang   merge->bj        = bj;
504702c68681SHong Zhang   merge->buf_ri    = buf_ri;
504802c68681SHong Zhang   merge->buf_rj    = buf_rj;
50490298fd71SBarry Smith   merge->coi       = NULL;
50500298fd71SBarry Smith   merge->coj       = NULL;
50510298fd71SBarry Smith   merge->owners_co = NULL;
5052affca5deSHong Zhang 
50539566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5054bf0cc555SLisandro Dalcin 
5055affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50569566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50579566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50589566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50599566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50609566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5061affca5deSHong Zhang   *mpimat = B_mpi;
506238f152feSBarry Smith 
50639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5065e5f2cdd8SHong Zhang }
506625616d81SHong Zhang 
5067d4036a1aSHong Zhang /*@C
506811a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5069d4036a1aSHong Zhang   matrices from each processor
5070d4036a1aSHong Zhang 
5071d083f849SBarry Smith   Collective
5072d4036a1aSHong Zhang 
5073d4036a1aSHong Zhang   Input Parameters:
5074d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5075d4036a1aSHong Zhang . seqmat - the input sequential matrices
507611a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
507711a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
507811a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5079d4036a1aSHong Zhang 
5080d4036a1aSHong Zhang   Output Parameter:
5081d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5082d4036a1aSHong Zhang 
5083d4036a1aSHong Zhang   Level: advanced
5084d4036a1aSHong Zhang 
508511a5261eSBarry Smith   Note:
5086d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5087d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5088*b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50892ef1f0ffSBarry Smith 
50901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5091d4036a1aSHong Zhang @*/
5092d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5093d71ae5a4SJacob Faibussowitsch {
50947e63b356SHong Zhang   PetscMPIInt size;
509555d1abb9SHong Zhang 
509655d1abb9SHong Zhang   PetscFunctionBegin;
50979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50987e63b356SHong Zhang   if (size == 1) {
50999566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51007e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51019566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51027e63b356SHong Zhang     } else {
51039566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51047e63b356SHong Zhang     }
51059566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51063ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51077e63b356SHong Zhang   }
51089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
510948a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51109566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
511355d1abb9SHong Zhang }
51144ebed01fSBarry Smith 
5115bc08b0f1SBarry Smith /*@
51162920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51178a9c020eSBarry Smith 
51188a9c020eSBarry Smith   Not Collective
51198a9c020eSBarry Smith 
51202fe279fdSBarry Smith   Input Parameter:
512120f4b53cSBarry Smith . A - the matrix
51228a9c020eSBarry Smith 
51238a9c020eSBarry Smith   Output Parameter:
51248a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51258a9c020eSBarry Smith 
51268a9c020eSBarry Smith   Level: developer
51278a9c020eSBarry Smith 
51288a9c020eSBarry Smith   Notes:
51292920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51302920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51312920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51322920cce0SJacob Faibussowitsch 
513311a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51348a9c020eSBarry Smith 
51352920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51362920cce0SJacob Faibussowitsch 
513711a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51388a9c020eSBarry Smith 
51391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51408a9c020eSBarry Smith @*/
5141d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5142d71ae5a4SJacob Faibussowitsch {
51438a9c020eSBarry Smith   PetscBool mpi;
51448a9c020eSBarry Smith 
51458a9c020eSBarry Smith   PetscFunctionBegin;
51468a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51478a9c020eSBarry Smith   if (mpi) {
51488a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51498a9c020eSBarry Smith   } else {
51508a9c020eSBarry Smith     *A_loc = A;
51518a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51528a9c020eSBarry Smith   }
51533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51548a9c020eSBarry Smith }
51558a9c020eSBarry Smith 
51568a9c020eSBarry Smith /*@
51572920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
515825616d81SHong Zhang 
515932fba14fSHong Zhang   Not Collective
516025616d81SHong Zhang 
516125616d81SHong Zhang   Input Parameters:
516225616d81SHong Zhang + A     - the matrix
516311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
516425616d81SHong Zhang 
516525616d81SHong Zhang   Output Parameter:
516625616d81SHong Zhang . A_loc - the local sequential matrix generated
516725616d81SHong Zhang 
516825616d81SHong Zhang   Level: developer
516925616d81SHong Zhang 
517077c65a98SStefano Zampini   Notes:
51712920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51722920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51732920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51742920cce0SJacob Faibussowitsch 
517511a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51768a9c020eSBarry Smith 
51772920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51782920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51792920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51802920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518177c65a98SStefano Zampini 
51821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
518325616d81SHong Zhang @*/
5184d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5185d71ae5a4SJacob Faibussowitsch {
518601b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5187b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5188b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5189ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5190ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519177c65a98SStefano Zampini   PetscMPIInt        size;
5192d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51935a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51948661ff28SBarry Smith   PetscBool          match;
519525616d81SHong Zhang 
519625616d81SHong Zhang   PetscFunctionBegin;
51979566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
519828b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520077c65a98SStefano Zampini   if (size == 1) {
520177c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52029566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
520377c65a98SStefano Zampini       *A_loc = mpimat->A;
520477c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52059566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
520677c65a98SStefano Zampini     }
52073ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
520877c65a98SStefano Zampini   }
520970a9ba44SHong Zhang 
52109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5211f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5212f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52139371c9d4SSatish Balay   ai = a->i;
52149371c9d4SSatish Balay   aj = a->j;
52159371c9d4SSatish Balay   bi = b->i;
52169371c9d4SSatish Balay   bj = b->j;
52179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5219ce496241SStefano Zampini   aa = aav;
5220ce496241SStefano Zampini   ba = bav;
522101b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5223dea91ad1SHong Zhang     ci[0] = 0;
5224ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5227dea91ad1SHong Zhang     k = 0;
522801b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52295a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52305a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523101b7ae99SHong Zhang       /* off-diagonal portion of A */
52325a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52335a7d977cSHong Zhang         col = cmap[*bj];
52345a7d977cSHong Zhang         if (col >= cstart) break;
52359371c9d4SSatish Balay         cj[k] = col;
52369371c9d4SSatish Balay         bj++;
52375a7d977cSHong Zhang         ca[k++] = *ba++;
52385a7d977cSHong Zhang       }
52395a7d977cSHong Zhang       /* diagonal portion of A */
52405a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52415a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52425a7d977cSHong Zhang         ca[k++] = *aa++;
52435a7d977cSHong Zhang       }
52445a7d977cSHong Zhang       /* off-diagonal portion of A */
52455a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52465a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52475a7d977cSHong Zhang         ca[k++] = *ba++;
52485a7d977cSHong Zhang       }
524925616d81SHong Zhang     }
5250dea91ad1SHong Zhang     /* put together the new matrix */
52519566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5252dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5253dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5254dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5255e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5256e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5257dea91ad1SHong Zhang     mat->nonew   = 0;
52585a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52595a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5260fff043a9SJunchao Zhang     ci  = mat->i;
5261fff043a9SJunchao Zhang     cj  = mat->j;
52629566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52635a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52645a7d977cSHong Zhang       /* off-diagonal portion of A */
52655a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52665a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52675a7d977cSHong Zhang         col = cmap[*bj];
52685a7d977cSHong Zhang         if (col >= cstart) break;
52699371c9d4SSatish Balay         *cam++ = *ba++;
52709371c9d4SSatish Balay         bj++;
52715a7d977cSHong Zhang       }
52725a7d977cSHong Zhang       /* diagonal portion of A */
5273ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5274a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52755a7d977cSHong Zhang       /* off-diagonal portion of A */
5276f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52779371c9d4SSatish Balay         *cam++ = *ba++;
52789371c9d4SSatish Balay         bj++;
5279f33d1a9aSHong Zhang       }
52805a7d977cSHong Zhang     }
52819566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
528298921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
528725616d81SHong Zhang }
528825616d81SHong Zhang 
5289ed502f03SStefano Zampini /*@
529011a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52914cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5292ed502f03SStefano Zampini 
5293ed502f03SStefano Zampini   Not Collective
5294ed502f03SStefano Zampini 
5295ed502f03SStefano Zampini   Input Parameters:
5296ed502f03SStefano Zampini + A     - the matrix
529711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5298ed502f03SStefano Zampini 
5299d8d19677SJose E. Roman   Output Parameters:
53002ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5301ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5302ed502f03SStefano Zampini 
5303ed502f03SStefano Zampini   Level: developer
5304ed502f03SStefano Zampini 
530511a5261eSBarry Smith   Note:
53062ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53074cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5308ed502f03SStefano Zampini 
53091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5310ed502f03SStefano Zampini @*/
5311d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5312d71ae5a4SJacob Faibussowitsch {
5313ed502f03SStefano Zampini   Mat             Ao, Ad;
5314ed502f03SStefano Zampini   const PetscInt *cmap;
5315ed502f03SStefano Zampini   PetscMPIInt     size;
5316ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5317ed502f03SStefano Zampini 
5318ed502f03SStefano Zampini   PetscFunctionBegin;
53199566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5321ed502f03SStefano Zampini   if (size == 1) {
5322ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53239566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5324ed502f03SStefano Zampini       *A_loc = Ad;
5325ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53269566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5327ed502f03SStefano Zampini     }
53289566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5330ed502f03SStefano Zampini   }
53319566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5333ed502f03SStefano Zampini   if (f) {
53349566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5335ed502f03SStefano Zampini   } else {
5336ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5337ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5338ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5339ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5340ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5341ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5342ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5343ed502f03SStefano Zampini     PetscScalar       *ca;
5344ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5345ed502f03SStefano Zampini 
53469566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53479566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53489566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53499566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5350ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5351ed502f03SStefano Zampini       PetscInt k;
53529566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53539566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53549566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5355ed502f03SStefano Zampini       ci[0] = 0;
5356ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5357ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5358ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5359ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5360ed502f03SStefano Zampini         /* diagonal portion of A */
5361ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5362ed502f03SStefano Zampini           cj[k] = *aj++;
5363ed502f03SStefano Zampini           ca[k] = *aa++;
5364ed502f03SStefano Zampini         }
5365ed502f03SStefano Zampini         /* off-diagonal portion of A */
5366ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5367ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5368ed502f03SStefano Zampini           ca[k] = *ba++;
5369ed502f03SStefano Zampini         }
5370ed502f03SStefano Zampini       }
5371ed502f03SStefano Zampini       /* put together the new matrix */
53729566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5373ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5374ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5375ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5376ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5377ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5378ed502f03SStefano Zampini       c->nonew   = 0;
53799566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5380ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53819566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5382ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5383ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5384ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5385ed502f03SStefano Zampini         /* diagonal portion of A */
5386ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5387ed502f03SStefano Zampini         /* off-diagonal portion of A */
5388ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5389ed502f03SStefano Zampini       }
53909566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539198921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53929566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53939566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5394ed502f03SStefano Zampini     if (glob) {
5395ed502f03SStefano Zampini       PetscInt cst, *gidx;
5396ed502f03SStefano Zampini 
53979566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5399ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5400ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54019566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5402ed502f03SStefano Zampini     }
5403ed502f03SStefano Zampini   }
54049566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5406ed502f03SStefano Zampini }
5407ed502f03SStefano Zampini 
540832fba14fSHong Zhang /*@C
540911a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541032fba14fSHong Zhang 
541132fba14fSHong Zhang   Not Collective
541232fba14fSHong Zhang 
541332fba14fSHong Zhang   Input Parameters:
541432fba14fSHong Zhang + A     - the matrix
541511a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
541620f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
541720f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
541832fba14fSHong Zhang 
541932fba14fSHong Zhang   Output Parameter:
542032fba14fSHong Zhang . A_loc - the local sequential matrix generated
542132fba14fSHong Zhang 
542232fba14fSHong Zhang   Level: developer
542332fba14fSHong Zhang 
54241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
542532fba14fSHong Zhang @*/
5426d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5427d71ae5a4SJacob Faibussowitsch {
542832fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
542932fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543032fba14fSHong Zhang   IS          isrowa, iscola;
543132fba14fSHong Zhang   Mat        *aloc;
54324a2b5492SBarry Smith   PetscBool   match;
543332fba14fSHong Zhang 
543432fba14fSHong Zhang   PetscFunctionBegin;
54359566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
543628b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
543832fba14fSHong Zhang   if (!row) {
54399371c9d4SSatish Balay     start = A->rmap->rstart;
54409371c9d4SSatish Balay     end   = A->rmap->rend;
54419566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
544232fba14fSHong Zhang   } else {
544332fba14fSHong Zhang     isrowa = *row;
544432fba14fSHong Zhang   }
544532fba14fSHong Zhang   if (!col) {
5446d0f46423SBarry Smith     start = A->cmap->rstart;
544732fba14fSHong Zhang     cmap  = a->garray;
5448d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5449d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545132fba14fSHong Zhang     ncols = 0;
545232fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
545332fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
545432fba14fSHong Zhang       else break;
545532fba14fSHong Zhang     }
545632fba14fSHong Zhang     imark = i;
545732fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
545832fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54599566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546032fba14fSHong Zhang   } else {
546132fba14fSHong Zhang     iscola = *col;
546232fba14fSHong Zhang   }
546332fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
546532fba14fSHong Zhang     aloc[0] = *A_loc;
546632fba14fSHong Zhang   }
54679566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5468109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54699566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5470109e0772SStefano Zampini   }
547132fba14fSHong Zhang   *A_loc = aloc[0];
54729566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
547348a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
547448a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
547732fba14fSHong Zhang }
547832fba14fSHong Zhang 
54795c65b9ecSFande Kong /*
54805c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54815c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54825c65b9ecSFande Kong  * on a global size.
54835c65b9ecSFande Kong  * */
5484ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5485d71ae5a4SJacob Faibussowitsch {
54865c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5487f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5488131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5489131c27b5Sprj-   PetscMPIInt            owner;
54905c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54915c65b9ecSFande Kong   const PetscInt        *lrowindices;
54925c65b9ecSFande Kong   PetscSF                sf, osf;
54935c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54945c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54955c65b9ecSFande Kong   MPI_Comm               comm;
54965c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5497fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54985c65b9ecSFande Kong 
54995c65b9ecSFande Kong   PetscFunctionBegin;
55009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55015c65b9ecSFande Kong   /* plocalsize is the number of roots
55025c65b9ecSFande Kong    * nrows is the number of leaves
55035c65b9ecSFande Kong    * */
55049566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55059566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55069566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55079566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55085c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55095c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55105c65b9ecSFande Kong      * The row could be local or remote
55115c65b9ecSFande Kong      * */
551234bcad68SFande Kong     owner = 0;
551334bcad68SFande Kong     lidx  = 0;
55149566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55155c65b9ecSFande Kong     iremote[i].index = lidx;
55165c65b9ecSFande Kong     iremote[i].rank  = owner;
55175c65b9ecSFande Kong   }
55185c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55199566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5520f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55215c65b9ecSFande Kong    * offsets
55225c65b9ecSFande Kong    * */
55239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55259566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5526bc8e477aSFande Kong 
55279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55299566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55305c65b9ecSFande Kong   roffsets[0] = 0;
55315c65b9ecSFande Kong   roffsets[1] = 0;
55325c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55334cf0e950SBarry Smith     /* diagonal */
55345c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55354cf0e950SBarry Smith     /* off-diagonal */
55365c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55375c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55385c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55395c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55405c65b9ecSFande Kong   }
55419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55429566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55435c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55449566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55459566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55469566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55479566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55489566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55499566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55509566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55515c65b9ecSFande Kong   dntotalcols = 0;
55525c65b9ecSFande Kong   ontotalcols = 0;
5553bc8e477aSFande Kong   ncol        = 0;
55545c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55555c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5556bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55574cf0e950SBarry Smith     /* diagonal */
55585c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55594cf0e950SBarry Smith     /* off-diagonal */
55605c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55615c65b9ecSFande Kong   }
55625c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55635c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55645c65b9ecSFande Kong    * */
55659566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55669566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55679566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55685c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55694cf0e950SBarry Smith   /* diagonal */
55709566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55714cf0e950SBarry Smith   /* off-diagonal */
55729566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55734cf0e950SBarry Smith   /* diagonal */
55749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55754cf0e950SBarry Smith   /* off-diagonal */
55769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55775c65b9ecSFande Kong   dntotalcols = 0;
55785c65b9ecSFande Kong   ontotalcols = 0;
55795c65b9ecSFande Kong   ntotalcols  = 0;
55805c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558134bcad68SFande Kong     owner = 0;
55829566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55835c65b9ecSFande Kong     /* Set iremote for diag matrix */
55845c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55855c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55865c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55875c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55885c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55895c65b9ecSFande Kong     }
55904cf0e950SBarry Smith     /* off-diagonal */
55915c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55925c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55935c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55945c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55955c65b9ecSFande Kong     }
55965c65b9ecSFande Kong   }
55979566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55989566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55999566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56009566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56015c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56025c65b9ecSFande Kong    * Diag matrix
56035c65b9ecSFande Kong    * */
56049566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56059566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56075c65b9ecSFande Kong 
56089566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56094cf0e950SBarry Smith   /* off-diagonal */
56109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56129566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56154cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56179566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56189566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56195c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56205c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56225c65b9ecSFande Kong   /* We want P_oth store global indices */
56239566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56245c65b9ecSFande Kong   /* Use memory scalable approach */
56259566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56269566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56279566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56289566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56295c65b9ecSFande Kong   /* Convert back to local indices */
56305c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56319566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56325c65b9ecSFande Kong   nout = 0;
56339566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
563408401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56359566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56365c65b9ecSFande Kong   /* Exchange values */
56379566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56389566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56415c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56425c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56455c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56469566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56479566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56489566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56515c65b9ecSFande Kong }
56525c65b9ecSFande Kong 
56535c65b9ecSFande Kong /*
56545c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56555c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56565c65b9ecSFande Kong  * */
5657d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5658d71ae5a4SJacob Faibussowitsch {
56595c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5660bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5661bc8e477aSFande Kong   IS          rows, map;
5662bc8e477aSFande Kong   PetscHMapI  hamp;
5663bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56645c65b9ecSFande Kong   MPI_Comm    comm;
56655c65b9ecSFande Kong   PetscSF     sf, osf;
5666bc8e477aSFande Kong   PetscBool   has;
56675c65b9ecSFande Kong 
56685c65b9ecSFande Kong   PetscFunctionBegin;
56699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56715c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56725c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56735c65b9ecSFande Kong    * */
56745c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56755c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5676eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56779566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5678bc8e477aSFande Kong     count = 0;
5679bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5680bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5681bc8e477aSFande Kong       key = a->garray[i] / dof;
56829566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5683bc8e477aSFande Kong       if (!has) {
5684bc8e477aSFande Kong         mapping[i] = count;
56859566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5686bc8e477aSFande Kong       } else {
5687bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5688bc8e477aSFande Kong         mapping[i] = count - 1;
56895c65b9ecSFande Kong       }
5690bc8e477aSFande Kong     }
56919566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56929566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5693eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56949566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56955c65b9ecSFande Kong     off = 0;
56969566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56979566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56989566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56999566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57005c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57019566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57029566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57039566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57049566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57059566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57065c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57075c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
570835cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5709fff043a9SJunchao Zhang      */
5710fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5711fff043a9SJunchao Zhang 
57129566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57139566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
571408401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57155c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57165c65b9ecSFande Kong     /* Update values in place */
57179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57199566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57209566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57219566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57229566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57256718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57285c65b9ecSFande Kong }
57295c65b9ecSFande Kong 
573025616d81SHong Zhang /*@C
573120f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
573225616d81SHong Zhang 
5733c3339decSBarry Smith   Collective
573425616d81SHong Zhang 
573525616d81SHong Zhang   Input Parameters:
573611a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
573711a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
573811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
573925616d81SHong Zhang 
5740f1a722f8SMatthew G. Knepley   Output Parameters:
574127430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
574227430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5743f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
574425616d81SHong Zhang 
574525616d81SHong Zhang   Level: developer
574625616d81SHong Zhang 
574720f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
574825616d81SHong Zhang @*/
5749d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5750d71ae5a4SJacob Faibussowitsch {
5751899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5752b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
575325616d81SHong Zhang   IS          isrowb, iscolb;
57540298fd71SBarry Smith   Mat        *bseq = NULL;
575525616d81SHong Zhang 
575625616d81SHong Zhang   PetscFunctionBegin;
575720f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
575820f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576025616d81SHong Zhang 
576125616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5762d0f46423SBarry Smith     start = A->cmap->rstart;
576325616d81SHong Zhang     cmap  = a->garray;
5764d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5765d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
576725616d81SHong Zhang     ncols = 0;
57680390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
576925616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577025616d81SHong Zhang       else break;
577125616d81SHong Zhang     }
577225616d81SHong Zhang     imark = i;
57730390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57740390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57759566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57769566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
577725616d81SHong Zhang   } else {
577808401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57799371c9d4SSatish Balay     isrowb = *rowb;
57809371c9d4SSatish Balay     iscolb = *colb;
57819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
578225616d81SHong Zhang     bseq[0] = *B_seq;
578325616d81SHong Zhang   }
57849566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
578525616d81SHong Zhang   *B_seq = bseq[0];
57869566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
578725616d81SHong Zhang   if (!rowb) {
57889566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
578925616d81SHong Zhang   } else {
579025616d81SHong Zhang     *rowb = isrowb;
579125616d81SHong Zhang   }
579225616d81SHong Zhang   if (!colb) {
57939566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
579425616d81SHong Zhang   } else {
579525616d81SHong Zhang     *colb = iscolb;
579625616d81SHong Zhang   }
57979566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
579925616d81SHong Zhang }
5800429d309bSHong Zhang 
5801f8487c73SHong Zhang /*
580227430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
580301b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5804429d309bSHong Zhang 
5805c3339decSBarry Smith     Collective
5806429d309bSHong Zhang 
5807429d309bSHong Zhang    Input Parameters:
580827430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
580927430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5810429d309bSHong Zhang 
5811429d309bSHong Zhang    Output Parameter:
58120298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58130298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58140298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5815598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5816429d309bSHong Zhang 
581711a5261eSBarry Smith     Developer Note:
581811a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58196eb45d04SBarry Smith      for this matrix. This is not desirable..
58206eb45d04SBarry Smith 
5821429d309bSHong Zhang     Level: developer
5822429d309bSHong Zhang 
5823f8487c73SHong Zhang */
5824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5825d71ae5a4SJacob Faibussowitsch {
5826899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
582787025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58284b8d542aSHong Zhang   VecScatter         ctx;
5829ce94432eSBarry Smith   MPI_Comm           comm;
58303515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58313515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5832277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5833f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5834277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5835ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5836ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5837429d309bSHong Zhang 
5838429d309bSHong Zhang   PetscFunctionBegin;
58399566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5841a7c7454dSHong Zhang 
584220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
584320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58459566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5846a6b2eed2SHong Zhang 
5847ec07b8f8SHong Zhang   if (size == 1) {
5848ec07b8f8SHong Zhang     startsj_s = NULL;
5849ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585052f7967eSHong Zhang     *B_oth    = NULL;
58513ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5852ec07b8f8SHong Zhang   }
5853ec07b8f8SHong Zhang 
5854fa83eaafSHong Zhang   ctx = a->Mvctx;
58554b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58564b8d542aSHong Zhang 
58579566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58583515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58599566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58609566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5862ddea5d60SJunchao Zhang   rwaits = reqs;
58638e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5864429d309bSHong Zhang 
5865b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5866429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5867a6b2eed2SHong Zhang     /* i-array */
5868a6b2eed2SHong Zhang     /*  post receives */
58699566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5870a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587174268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5872e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58739566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5874429d309bSHong Zhang     }
5875a6b2eed2SHong Zhang 
5876a6b2eed2SHong Zhang     /* pack the outgoing message */
58779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58782205254eSKarl Rupp 
58792205254eSKarl Rupp     sstartsj[0] = 0;
58802205254eSKarl Rupp     rstartsj[0] = 0;
5881a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58823515ee7fSJunchao Zhang     if (nsends) {
58833515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58849566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58853515ee7fSJunchao Zhang     }
5886a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58873515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5888e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
588987025532SHong Zhang       for (j = 0; j < nrows; j++) {
5890d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5891e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58929566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58932205254eSKarl Rupp 
5894e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58952205254eSKarl Rupp 
5896e42f35eeSHong Zhang           len += ncols;
58979566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5898e42f35eeSHong Zhang         }
5899a6b2eed2SHong Zhang         k++;
5900429d309bSHong Zhang       }
59019566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59022205254eSKarl Rupp 
5903dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5904429d309bSHong Zhang     }
590587025532SHong Zhang     /* recvs and sends of i-array are completed */
59069566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59079566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5908e42f35eeSHong Zhang 
5909a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5912a6b2eed2SHong Zhang 
591387025532SHong Zhang     /* create i-array of B_oth */
59149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59152205254eSKarl Rupp 
591687025532SHong Zhang     b_othi[0] = 0;
5917a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5918a6b2eed2SHong Zhang     k         = 0;
5919a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59203515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59213515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
592287025532SHong Zhang       for (j = 0; j < nrows; j++) {
592387025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59249566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5925f91af8c7SBarry Smith         k++;
5926a6b2eed2SHong Zhang       }
5927dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5928a6b2eed2SHong Zhang     }
59299566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5930a6b2eed2SHong Zhang 
59316aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5934a6b2eed2SHong Zhang 
593587025532SHong Zhang     /* j-array */
5936a6b2eed2SHong Zhang     /*  post receives of j-array */
5937a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
593887025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59399566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5940a6b2eed2SHong Zhang     }
5941e42f35eeSHong Zhang 
5942e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59433515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5944a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5945e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5946a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
594787025532SHong Zhang       for (j = 0; j < nrows; j++) {
5948d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5949e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59509566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5951ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59529566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5953e42f35eeSHong Zhang         }
595487025532SHong Zhang       }
59559566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
595687025532SHong Zhang     }
595787025532SHong Zhang 
595887025532SHong Zhang     /* recvs and sends of j-array are completed */
59599566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596087025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5961b7f45c76SHong Zhang     sstartsj = *startsj_s;
59621d79065fSBarry Smith     rstartsj = *startsj_r;
596387025532SHong Zhang     bufa     = *bufa_ptr;
596487025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59659566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5966ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
596787025532SHong Zhang 
596887025532SHong Zhang   /* a-array */
596987025532SHong Zhang   /*  post receives of a-array */
597087025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597187025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
597387025532SHong Zhang   }
5974e42f35eeSHong Zhang 
5975e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59763515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
597787025532SHong Zhang   for (i = 0; i < nsends; i++) {
5978e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
597987025532SHong Zhang     bufA  = bufa + sstartsj[i];
598087025532SHong Zhang     for (j = 0; j < nrows; j++) {
5981d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5982e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59839566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5984ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59859566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5986e42f35eeSHong Zhang       }
5987a6b2eed2SHong Zhang     }
59889566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5989a6b2eed2SHong Zhang   }
599087025532SHong Zhang   /* recvs and sends of a-array are completed */
59919566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59929566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5993a6b2eed2SHong Zhang 
599487025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5995a6b2eed2SHong Zhang     /* put together the new matrix */
59969566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5997a6b2eed2SHong Zhang 
5998a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5999a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
600087025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6001e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6002e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
600387025532SHong Zhang     b_oth->nonew   = 0;
6004a6b2eed2SHong Zhang 
60059566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6006b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60079566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60089566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6009dea91ad1SHong Zhang     } else {
6010b7f45c76SHong Zhang       *startsj_s = sstartsj;
60111d79065fSBarry Smith       *startsj_r = rstartsj;
601287025532SHong Zhang       *bufa_ptr  = bufa;
601387025532SHong Zhang     }
6014fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6016dea91ad1SHong Zhang   }
60173515ee7fSJunchao Zhang 
60189566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60199566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6022429d309bSHong Zhang }
6023ccd8e176SBarry Smith 
6024cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6025cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6026ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60279779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6028a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6029191b95cbSRichard Tran Mills #endif
6030ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6031cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60325d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60345d7652ecSHong Zhang #endif
6035d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6036d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6037d24d4204SJose E. Roman #endif
603863c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
603963c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
604063c07aadSStefano Zampini #endif
60413338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60423338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60433338378cSStefano Zampini #endif
6044d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6045d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6046d5e393b6SSuyash Tandon #endif
60473d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60483d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60493d0639e7SStefano Zampini #endif
6050d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60514222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60524222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
605317667f90SBarry Smith 
6054fc4dec0aSBarry Smith /*
6055fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6056fc4dec0aSBarry Smith 
6057fc4dec0aSBarry Smith                n                       p                          p
60582da392ccSBarry Smith         [             ]       [             ]         [                 ]
60592da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60602da392ccSBarry Smith         [             ]       [             ]         [                 ]
6061fc4dec0aSBarry Smith 
6062fc4dec0aSBarry Smith */
6063d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6064d71ae5a4SJacob Faibussowitsch {
6065fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6066fc4dec0aSBarry Smith 
6067fc4dec0aSBarry Smith   PetscFunctionBegin;
60689566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60699566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60709566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60719566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60729566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60737fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60749566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60759566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6077fc4dec0aSBarry Smith }
6078fc4dec0aSBarry Smith 
6079d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6080d71ae5a4SJacob Faibussowitsch {
60816718818eSStefano Zampini   PetscBool cisdense;
6082fc4dec0aSBarry Smith 
6083fc4dec0aSBarry Smith   PetscFunctionBegin;
608408401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60859566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60869566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6087d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
608848a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60899566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6090f75ecaa4SHong Zhang 
60914222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6093fc4dec0aSBarry Smith }
6094fc4dec0aSBarry Smith 
6095d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6096d71ae5a4SJacob Faibussowitsch {
60974222ddf1SHong Zhang   Mat_Product *product = C->product;
60984222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6099fc4dec0aSBarry Smith 
6100fc4dec0aSBarry Smith   PetscFunctionBegin;
610120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
610220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61034222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61044222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6106fc4dec0aSBarry Smith }
6107fc4dec0aSBarry Smith 
6108d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6109d71ae5a4SJacob Faibussowitsch {
61104222ddf1SHong Zhang   Mat_Product *product = C->product;
61114222ddf1SHong Zhang 
61124222ddf1SHong Zhang   PetscFunctionBegin;
611348a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61154222ddf1SHong Zhang }
6116394ed5ebSJunchao Zhang 
611727430b45SBarry Smith /*
611827430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6119394ed5ebSJunchao Zhang 
6120394ed5ebSJunchao Zhang   Input Parameters:
6121394ed5ebSJunchao Zhang 
6122651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6123651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6124394ed5ebSJunchao Zhang 
6125158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6126394ed5ebSJunchao Zhang 
6127394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6128394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6129394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6130394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6131394ed5ebSJunchao Zhang 
6132394ed5ebSJunchao Zhang     Similar for Set2.
6133394ed5ebSJunchao Zhang 
6134394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6135394ed5ebSJunchao Zhang 
6136158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6137394ed5ebSJunchao Zhang 
6138394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6139394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6140394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6141394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6142394ed5ebSJunchao Zhang */
6143d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6144d71ae5a4SJacob Faibussowitsch {
6145394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6146394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6147394ed5ebSJunchao Zhang 
6148394ed5ebSJunchao Zhang   PetscFunctionBegin;
61499566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6150394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6151394ed5ebSJunchao Zhang   i[0]        = 0;
6152394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6153394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6154394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6155394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6156394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6157394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6158394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6159394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6160394ed5ebSJunchao Zhang         imap1[t1] = t;
6161394ed5ebSJunchao Zhang         imap2[t2] = t;
6162394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6163394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61649371c9d4SSatish Balay         t1++;
61659371c9d4SSatish Balay         t2++;
61669371c9d4SSatish Balay         t++;
6167394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6168394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6169394ed5ebSJunchao Zhang         imap1[t1] = t;
6170394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61719371c9d4SSatish Balay         t1++;
61729371c9d4SSatish Balay         t++;
6173394ed5ebSJunchao Zhang       } else {
6174394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6175394ed5ebSJunchao Zhang         imap2[t2] = t;
6176394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61779371c9d4SSatish Balay         t2++;
61789371c9d4SSatish Balay         t++;
6179394ed5ebSJunchao Zhang       }
6180394ed5ebSJunchao Zhang     }
6181394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6182394ed5ebSJunchao Zhang     while (b1 < e1) {
6183394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6184394ed5ebSJunchao Zhang       imap1[t1] = t;
6185394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61869371c9d4SSatish Balay       t1++;
61879371c9d4SSatish Balay       t++;
6188394ed5ebSJunchao Zhang     }
6189394ed5ebSJunchao Zhang     while (b2 < e2) {
6190394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6191394ed5ebSJunchao Zhang       imap2[t2] = t;
6192394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61939371c9d4SSatish Balay       t2++;
61949371c9d4SSatish Balay       t++;
6195394ed5ebSJunchao Zhang     }
6196394ed5ebSJunchao Zhang     i[r + 1] = t;
6197394ed5ebSJunchao Zhang   }
61983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6199394ed5ebSJunchao Zhang }
6200394ed5ebSJunchao Zhang 
620127430b45SBarry Smith /*
620227430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6203394ed5ebSJunchao Zhang 
6204394ed5ebSJunchao Zhang   Input Parameters:
6205394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6206394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6207394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6208394ed5ebSJunchao Zhang 
6209394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6210394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6211394ed5ebSJunchao Zhang 
6212394ed5ebSJunchao Zhang   Output Parameters:
6213394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6214394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6215394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6216394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6217394ed5ebSJunchao Zhang 
6218394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6219158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6220158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6221394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6222394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6223394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6224394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6225394ed5ebSJunchao Zhang 
6226394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6227394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6228394ed5ebSJunchao Zhang 
6229394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6230394ed5ebSJunchao Zhang 
6231158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6232394ed5ebSJunchao Zhang */
6233d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6234d71ae5a4SJacob Faibussowitsch {
6235394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6236394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6237394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6238394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6239394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6240394ed5ebSJunchao Zhang 
6241394ed5ebSJunchao Zhang   PetscFunctionBegin;
62429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6244394ed5ebSJunchao Zhang   m = rend - rstart;
6245394ed5ebSJunchao Zhang 
6246651b1cf9SStefano Zampini   /* Skip negative rows */
6247651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62489371c9d4SSatish Balay     if (i[k] >= 0) break;
6249394ed5ebSJunchao Zhang 
6250394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6251394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6252394ed5ebSJunchao Zhang   */
6253394ed5ebSJunchao Zhang   while (k < n) {
6254394ed5ebSJunchao Zhang     row = i[k];
6255394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62569371c9d4SSatish Balay     for (s = k; s < n; s++)
62579371c9d4SSatish Balay       if (i[s] != row) break;
6258651b1cf9SStefano Zampini 
6259651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6260394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6261651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
626254c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6263394ed5ebSJunchao Zhang     }
62649566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6265158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6266394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6267394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6268394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6269394ed5ebSJunchao Zhang 
6270394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6271394ed5ebSJunchao Zhang     Atot += mid - k;
6272394ed5ebSJunchao Zhang     Btot += s - mid;
6273394ed5ebSJunchao Zhang 
6274651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6275394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6276394ed5ebSJunchao Zhang       col = j[p];
62779371c9d4SSatish Balay       do {
6278651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62799371c9d4SSatish Balay         p++;
6280651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6281394ed5ebSJunchao Zhang       Annz++;
6282394ed5ebSJunchao Zhang     }
6283394ed5ebSJunchao Zhang 
6284651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6285394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6286394ed5ebSJunchao Zhang       col = j[p];
6287d71ae5a4SJacob Faibussowitsch       do {
6288d71ae5a4SJacob Faibussowitsch         p++;
6289d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6290394ed5ebSJunchao Zhang       Bnnz++;
6291394ed5ebSJunchao Zhang     }
6292394ed5ebSJunchao Zhang     k = s;
6293394ed5ebSJunchao Zhang   }
6294394ed5ebSJunchao Zhang 
6295394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6296158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6297158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6298158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6299158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6300394ed5ebSJunchao Zhang 
63016aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6302394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6303394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6304394ed5ebSJunchao Zhang     k   = rowBegin[r];
6305394ed5ebSJunchao Zhang     mid = rowMid[r];
6306394ed5ebSJunchao Zhang     s   = rowEnd[r];
63078e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63088e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6309394ed5ebSJunchao Zhang     Atot += mid - k;
6310394ed5ebSJunchao Zhang     Btot += s - mid;
6311394ed5ebSJunchao Zhang 
6312394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6313394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6314394ed5ebSJunchao Zhang       col = j[p];
6315394ed5ebSJunchao Zhang       q   = p;
6316d71ae5a4SJacob Faibussowitsch       do {
6317d71ae5a4SJacob Faibussowitsch         p++;
6318d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6319394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6320394ed5ebSJunchao Zhang       Annz++;
6321394ed5ebSJunchao Zhang     }
6322394ed5ebSJunchao Zhang 
6323394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6324394ed5ebSJunchao Zhang       col = j[p];
6325394ed5ebSJunchao Zhang       q   = p;
6326d71ae5a4SJacob Faibussowitsch       do {
6327d71ae5a4SJacob Faibussowitsch         p++;
6328d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6329394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6330394ed5ebSJunchao Zhang       Bnnz++;
6331394ed5ebSJunchao Zhang     }
6332394ed5ebSJunchao Zhang   }
6333394ed5ebSJunchao Zhang   /* Output */
6334394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6335394ed5ebSJunchao Zhang   *Annz_  = Annz;
6336394ed5ebSJunchao Zhang   *Atot_  = Atot;
6337394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6338394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6339394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6340394ed5ebSJunchao Zhang   *Btot_  = Btot;
6341394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6343394ed5ebSJunchao Zhang }
6344394ed5ebSJunchao Zhang 
634527430b45SBarry Smith /*
634627430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6347158ec288SJunchao Zhang 
6348158ec288SJunchao Zhang   Input Parameters:
6349158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6350158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6351158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6352651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6353158ec288SJunchao Zhang 
6354158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6355158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6356158ec288SJunchao Zhang 
6357158ec288SJunchao Zhang   Example:
6358158ec288SJunchao Zhang     nnz1 = 4
6359158ec288SJunchao Zhang     nnz  = 6
6360158ec288SJunchao Zhang     imap = [1,3,4,5]
6361158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6362158ec288SJunchao Zhang    then,
6363158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6364158ec288SJunchao Zhang */
6365d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6366d71ae5a4SJacob Faibussowitsch {
6367158ec288SJunchao Zhang   PetscCount k, p;
6368158ec288SJunchao Zhang 
6369158ec288SJunchao Zhang   PetscFunctionBegin;
6370158ec288SJunchao Zhang   jmap_new[0] = 0;
6371158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6372158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6373158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6374158ec288SJunchao Zhang   }
6375158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6377158ec288SJunchao Zhang }
6378158ec288SJunchao Zhang 
63792c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63802c4ab24aSJunchao Zhang {
63812c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63822c4ab24aSJunchao Zhang 
63832c4ab24aSJunchao Zhang   PetscFunctionBegin;
63842c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63852c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63862c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63872c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63882c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63892c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63902c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63912c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63922c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63982c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63992c4ab24aSJunchao Zhang }
64002c4ab24aSJunchao Zhang 
6401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6402d71ae5a4SJacob Faibussowitsch {
6403394ed5ebSJunchao Zhang   MPI_Comm             comm;
6404394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6405394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6406394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6407394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64082c4ab24aSJunchao Zhang   PetscContainer       container;
64092c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6410394ed5ebSJunchao Zhang 
6411394ed5ebSJunchao Zhang   PetscFunctionBegin;
64129566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64139566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6414cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6415eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6416cbc6b225SStefano Zampini #else
64179566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6418cbc6b225SStefano Zampini #endif
64199566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6420cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6421cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6422cbc6b225SStefano Zampini 
64239566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64279566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64309566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64319566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6432394ed5ebSJunchao Zhang 
64336aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6434394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6435394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6436e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6437e8729f6fSJunchao Zhang 
6438e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6439394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6440394ed5ebSJunchao Zhang 
6441394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6442394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6443394ed5ebSJunchao Zhang      will have positive row indices.
6444394ed5ebSJunchao Zhang   */
6445394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6446394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6447394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6448f7d195e4SLawrence Mitchell     else {
6449f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6450f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6451f7d195e4SLawrence Mitchell     }
6452394ed5ebSJunchao Zhang   }
6453394ed5ebSJunchao Zhang 
6454da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64559566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6456651b1cf9SStefano Zampini 
6457651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6458651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64599371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6460651b1cf9SStefano Zampini   PetscInt i1start = k;
6461651b1cf9SStefano Zampini 
64629566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6463394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6464394ed5ebSJunchao Zhang 
6465394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6466394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6467394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6468394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6469394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6470394ed5ebSJunchao Zhang   const PetscInt *ranges;
6471394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6472394ed5ebSJunchao Zhang 
64739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6475394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6476394ed5ebSJunchao Zhang     PetscMPIInt owner;
6477394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6478cbc6b225SStefano Zampini 
6479394ed5ebSJunchao Zhang     /* Locate a row range */
6480394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64819566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6482394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6483394ed5ebSJunchao Zhang 
6484394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64859566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6486394ed5ebSJunchao Zhang 
6487394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6488394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6489394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6490394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6491394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6492cbc6b225SStefano Zampini 
64939566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64949566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64959566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64969566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6497394ed5ebSJunchao Zhang       sendto   = sendto2;
6498394ed5ebSJunchao Zhang       nentries = nentries2;
6499394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6500394ed5ebSJunchao Zhang     }
6501394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6502394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65039566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6504394ed5ebSJunchao Zhang     nsend++;
6505394ed5ebSJunchao Zhang     k = p;
6506394ed5ebSJunchao Zhang   }
6507394ed5ebSJunchao Zhang 
6508394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6509394ed5ebSJunchao Zhang   PetscSF      sf1;
6510394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6511394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6512394ed5ebSJunchao Zhang   PetscInt    *offsets;
6513394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6514394ed5ebSJunchao Zhang 
65159566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6518394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6519394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6520394ed5ebSJunchao Zhang     iremote[k].index = 0;
6521394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
652254c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6523394ed5ebSJunchao Zhang   }
65249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65259566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65269566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65279566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6528e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6529394ed5ebSJunchao Zhang 
6530394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6531394ed5ebSJunchao Zhang   PetscSF sf2;
6532394ed5ebSJunchao Zhang   nroots  = nroots2;
6533394ed5ebSJunchao Zhang   nleaves = nleaves2;
65349566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65359566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6537394ed5ebSJunchao Zhang   p = 0;
6538394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
653954c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6540394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6541394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6542394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6543394ed5ebSJunchao Zhang     }
6544394ed5ebSJunchao Zhang   }
65459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6546394ed5ebSJunchao Zhang 
6547394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6548394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6549394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6551834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6552834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6553834dcf29SHansol Suh   PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */
6554834dcf29SHansol Suh   PetscInt *j1prem = j1 ? j1 + rem : NULL;
6555834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6556834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6557834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6558834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6559394ed5ebSJunchao Zhang 
65609566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65619566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6562394ed5ebSJunchao Zhang 
6563394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6564394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65659566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6566394ed5ebSJunchao Zhang 
6567651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6568651b1cf9SStefano Zampini   PetscCount *Cperm1;
6569834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6570834dcf29SHansol Suh   PetscCount *perm1prem = perm1 ? perm1 + rem : NULL;
6571651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6572834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6573651b1cf9SStefano Zampini 
6574651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6575651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6576651b1cf9SStefano Zampini   PetscBool   hypre;
6577651b1cf9SStefano Zampini   const char *name;
6578651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6579651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6580651b1cf9SStefano Zampini   if (hypre) {
6581651b1cf9SStefano Zampini     PetscInt *minj;
6582651b1cf9SStefano Zampini     PetscBT   hasdiag;
6583651b1cf9SStefano Zampini 
6584651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6585651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6586651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6587651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6588651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6589651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6590651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6591651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6592651b1cf9SStefano Zampini     }
6593651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6594651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6595651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6596651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6597651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6598651b1cf9SStefano Zampini     }
6599651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6600651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6601651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6602651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6603651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6604651b1cf9SStefano Zampini     }
6605651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6606651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6607651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6608651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6609651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6610651b1cf9SStefano Zampini     }
6611651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6612651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6613651b1cf9SStefano Zampini   }
6614651b1cf9SStefano Zampini 
6615651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6616651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6617651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6618651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6619394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6620394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6621394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6622394ed5ebSJunchao Zhang 
6623651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66249566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6625651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66269566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6627394ed5ebSJunchao Zhang 
6628394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6629394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6630394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6631394ed5ebSJunchao Zhang 
66329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6636394ed5ebSJunchao Zhang 
6637394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6638158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6639158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6640158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6641158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6642394ed5ebSJunchao Zhang 
66439566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66449566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6645158ec288SJunchao Zhang 
6646158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6647158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6648158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6649158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6650158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6651158ec288SJunchao Zhang 
6652158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6653158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6654158ec288SJunchao Zhang 
6655158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6656158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6657158ec288SJunchao Zhang 
6658158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6659158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6660158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6661158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66629566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66639566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6664e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66659566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6666394ed5ebSJunchao Zhang 
6667158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6668158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6669158ec288SJunchao Zhang 
6670394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6671394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6672394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66749566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66759566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6676394ed5ebSJunchao Zhang     Aj = Aj_new;
6677394ed5ebSJunchao Zhang   }
6678394ed5ebSJunchao Zhang 
6679394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6680394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66839566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6684394ed5ebSJunchao Zhang     Bj = Bj_new;
6685394ed5ebSJunchao Zhang   }
6686394ed5ebSJunchao Zhang 
6687cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6688394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6689cbc6b225SStefano Zampini   MatType          rtype;
6690394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6691cf8ba265SJunchao Zhang   PetscObjectState state;
66929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6694394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66959371c9d4SSatish Balay   if (cstart) {
66969371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66979371c9d4SSatish Balay   }
6698c508b908SBarry Smith 
66999566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6700c508b908SBarry Smith 
6701c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6702c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67039566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67040da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6705c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6706c508b908SBarry Smith 
6707c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6708c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67099566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67100da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6711c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6712c508b908SBarry Smith 
67139566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67145bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6715cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6716cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6717cbc6b225SStefano Zampini 
6718394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6719394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6720394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6721394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6722394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6723394ed5ebSJunchao Zhang 
6724cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67259566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67269566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67279566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67289566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6729cbc6b225SStefano Zampini 
67302c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67312c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67322c4ab24aSJunchao Zhang   coo->n       = coo_n;
67332c4ab24aSJunchao Zhang   coo->sf      = sf2;
67342c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67352c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67362c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67372c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67382c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67392c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67402c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67412c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67422c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67432c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67442c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67452c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67462c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67472c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67482c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67492c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67502c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67512c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67522c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67532c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67542c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67552c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67562c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67572c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67582c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67592c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67602c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67612c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6763394ed5ebSJunchao Zhang }
6764394ed5ebSJunchao Zhang 
6765d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6766d71ae5a4SJacob Faibussowitsch {
6767394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6768394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6769394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67702c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67712c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67722c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67732c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67742c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67752c4ab24aSJunchao Zhang   PetscContainer       container;
67762c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6777394ed5ebSJunchao Zhang 
6778394ed5ebSJunchao Zhang   PetscFunctionBegin;
67792c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67802c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67812c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67822c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67832c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67842c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67852c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67862c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67872c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67882c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67892c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67902c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67912c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67922c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67932c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67942c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67952c4ab24aSJunchao Zhang 
67969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6798394ed5ebSJunchao Zhang 
6799394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68002c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6801394ed5ebSJunchao Zhang 
6802394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68032c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6804394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68052c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6806da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6807158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6808158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6809394ed5ebSJunchao Zhang   }
68102c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6811158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6812158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6813158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6814394ed5ebSJunchao Zhang   }
68152c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6816394ed5ebSJunchao Zhang 
6817394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68182c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6819394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6820394ed5ebSJunchao Zhang   }
68212c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6822394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6823394ed5ebSJunchao Zhang   }
68249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6827394ed5ebSJunchao Zhang }
6828394ed5ebSJunchao Zhang 
6829ccd8e176SBarry Smith /*MC
6830ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6831ccd8e176SBarry Smith 
6832ccd8e176SBarry Smith    Options Database Keys:
683311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6834ccd8e176SBarry Smith 
6835ccd8e176SBarry Smith    Level: beginner
68360cd7f59aSBarry Smith 
68370cd7f59aSBarry Smith    Notes:
68382ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68390cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68400cd7f59aSBarry Smith     in the matrix
68410cd7f59aSBarry Smith 
684211a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
684311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6844ccd8e176SBarry Smith 
68451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6846ccd8e176SBarry Smith M*/
6847d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6848d71ae5a4SJacob Faibussowitsch {
6849ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6850ccd8e176SBarry Smith   PetscMPIInt size;
6851ccd8e176SBarry Smith 
6852ccd8e176SBarry Smith   PetscFunctionBegin;
68539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68542205254eSKarl Rupp 
68554dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6856ccd8e176SBarry Smith   B->data       = (void *)b;
6857aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6858ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6859ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6860ccd8e176SBarry Smith   b->size       = size;
68612205254eSKarl Rupp 
68629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6863ccd8e176SBarry Smith 
6864ccd8e176SBarry Smith   /* build cache for off array entries formed */
68659566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68662205254eSKarl Rupp 
6867ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6868f4259b30SLisandro Dalcin   b->colmap      = NULL;
6869f4259b30SLisandro Dalcin   b->garray      = NULL;
6870ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6871ccd8e176SBarry Smith 
6872ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68730298fd71SBarry Smith   b->lvec  = NULL;
68740298fd71SBarry Smith   b->Mvctx = NULL;
6875ccd8e176SBarry Smith 
6876ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6877f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6878f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6879ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6880ccd8e176SBarry Smith 
6881f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68820298fd71SBarry Smith   b->spptr = NULL;
6883f60c3dc2SHong Zhang 
68849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68879566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68943d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68963d0639e7SStefano Zampini #endif
6897d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6898d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6899d5e393b6SSuyash Tandon #endif
69003d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69023d0639e7SStefano Zampini #endif
69039779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6905191b95cbSRichard Tran Mills #endif
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69105d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69125d7652ecSHong Zhang #endif
6913d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6915d24d4204SJose E. Roman #endif
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69183dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69213dad0653Sstefano_zampini #endif
69229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69269566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6928ccd8e176SBarry Smith }
692981824310SBarry Smith 
6930cce60c4dSBarry Smith /*@C
693111a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
693203bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
693303bfb495SBarry Smith 
6934d083f849SBarry Smith   Collective
693503bfb495SBarry Smith 
693603bfb495SBarry Smith   Input Parameters:
693703bfb495SBarry Smith + comm - MPI communicator
693811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
693903bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6940d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69412ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69422ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69432ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6944483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
694504ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
694603bfb495SBarry Smith . a    - matrix values
6947483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69482ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
694903bfb495SBarry Smith - oa   - matrix values
695003bfb495SBarry Smith 
695103bfb495SBarry Smith   Output Parameter:
695203bfb495SBarry Smith . mat - the matrix
695303bfb495SBarry Smith 
695403bfb495SBarry Smith   Level: advanced
695503bfb495SBarry Smith 
695603bfb495SBarry Smith   Notes:
69572ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6958292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
695903bfb495SBarry Smith 
69602ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
696103bfb495SBarry Smith 
69622ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
696303bfb495SBarry Smith 
69647b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69657b55108eSBarry Smith 
6966dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6967dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6968dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6969dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
697011a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6971dca341c0SJed Brown   communication if it is known that only local entries will be set.
697203bfb495SBarry Smith 
69731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6974db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69752b26979fSBarry Smith @*/
6976d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6977d71ae5a4SJacob Faibussowitsch {
697803bfb495SBarry Smith   Mat_MPIAIJ *maij;
697903bfb495SBarry Smith 
698003bfb495SBarry Smith   PetscFunctionBegin;
698108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6982aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6983aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69849566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69859566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69869566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
698703bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69882205254eSKarl Rupp 
69898d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
699003bfb495SBarry Smith 
69919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
699303bfb495SBarry Smith 
69949566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69959566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
699603bfb495SBarry Smith 
69979566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70009566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70019566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700303bfb495SBarry Smith }
700403bfb495SBarry Smith 
70054e84afc0SStefano Zampini typedef struct {
70064e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70074e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70084e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70094e84afc0SStefano Zampini 
70104e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70114e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70124e84afc0SStefano Zampini   PetscScalar *bufa;
70134e84afc0SStefano Zampini   Mat          P_oth;
70144e84afc0SStefano Zampini 
70154e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7016ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70174e84afc0SStefano Zampini 
7018ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70194e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70204e84afc0SStefano Zampini      of the temporary storage */
70214e84afc0SStefano Zampini   PetscBool reusesym;
70224e84afc0SStefano Zampini 
70234e84afc0SStefano Zampini   /* support for COO values insertion */
7024ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7025ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7026ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7027ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7028c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7029c215019aSStefano Zampini   PetscMemType mtype;
70304e84afc0SStefano Zampini 
70314e84afc0SStefano Zampini   /* customization */
70324e84afc0SStefano Zampini   PetscBool abmerge;
7033abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70344e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70354e84afc0SStefano Zampini 
7036ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7037d71ae5a4SJacob Faibussowitsch {
70384e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70394e84afc0SStefano Zampini   PetscInt             i;
70404e84afc0SStefano Zampini 
70414e84afc0SStefano Zampini   PetscFunctionBegin;
70429566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70439566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70449566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70459566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70469566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70479566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70489566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
704948a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70509566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70519566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70529566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70539566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70549566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70559566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70574e84afc0SStefano Zampini }
70584e84afc0SStefano Zampini 
7059fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7060fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7061fff043a9SJunchao Zhang  */
7062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7063d71ae5a4SJacob Faibussowitsch {
7064c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7065c215019aSStefano Zampini 
7066c215019aSStefano Zampini   PetscFunctionBegin;
70679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7068c215019aSStefano Zampini   if (f) {
70699566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7070c215019aSStefano Zampini   } else {
7071c215019aSStefano Zampini     const PetscScalar *vv;
7072c215019aSStefano Zampini 
70739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7074c215019aSStefano Zampini     if (n && idx) {
7075c215019aSStefano Zampini       PetscScalar    *w  = v;
7076c215019aSStefano Zampini       const PetscInt *oi = idx;
7077c215019aSStefano Zampini       PetscInt        j;
7078c215019aSStefano Zampini 
7079c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7080c215019aSStefano Zampini     } else {
70819566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7082c215019aSStefano Zampini     }
70839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7084c215019aSStefano Zampini   }
70853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7086c215019aSStefano Zampini }
7087c215019aSStefano Zampini 
7088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7089d71ae5a4SJacob Faibussowitsch {
70904e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70914e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70924e84afc0SStefano Zampini 
70934e84afc0SStefano Zampini   PetscFunctionBegin;
70944e84afc0SStefano Zampini   MatCheckProduct(C, 1);
709528b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70964e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70974e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
709848a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
709948a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71004e84afc0SStefano Zampini   }
71014e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7102abb89eb1SStefano Zampini 
7103abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
710408401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71059566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7106abb89eb1SStefano Zampini   }
71074e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71084e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
71094e84afc0SStefano Zampini 
71104e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71114e84afc0SStefano Zampini     if (noff) {
7112c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7113c215019aSStefano Zampini 
71149566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71159566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71164e84afc0SStefano Zampini       n_o += noff;
71174e84afc0SStefano Zampini       n_d += nown;
71184e84afc0SStefano Zampini     } else {
7119c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7120c215019aSStefano Zampini 
71219566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71224e84afc0SStefano Zampini       n_d += mm->nz;
71234e84afc0SStefano Zampini     }
71244e84afc0SStefano Zampini   }
7125c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71269566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71279566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71284e84afc0SStefano Zampini   }
71299566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71314e84afc0SStefano Zampini }
71324e84afc0SStefano Zampini 
71334e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71344e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7136d71ae5a4SJacob Faibussowitsch {
71374e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7138ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71394e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71404e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71414e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71424e84afc0SStefano Zampini   IS                     glob      = NULL;
71434e84afc0SStefano Zampini   const char            *prefix;
71444e84afc0SStefano Zampini   char                   pprefix[256];
71454e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
714682a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
714782a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7148ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7149ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7150ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7151ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7152ddea5d60SJunchao Zhang 
71534e84afc0SStefano Zampini   MatProductType ptype;
7154d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71554e84afc0SStefano Zampini   PetscMPIInt    size;
71564e84afc0SStefano Zampini 
71574e84afc0SStefano Zampini   PetscFunctionBegin;
71584e84afc0SStefano Zampini   MatCheckProduct(C, 1);
715928b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71604e84afc0SStefano Zampini   ptype = product->type;
7161b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7162fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7163fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7164fa046f9fSJunchao Zhang   }
71654e84afc0SStefano Zampini   switch (ptype) {
71664e84afc0SStefano Zampini   case MATPRODUCT_AB:
71674e84afc0SStefano Zampini     A          = product->A;
71684e84afc0SStefano Zampini     P          = product->B;
71694e84afc0SStefano Zampini     m          = A->rmap->n;
71704e84afc0SStefano Zampini     n          = P->cmap->n;
71714e84afc0SStefano Zampini     M          = A->rmap->N;
71724e84afc0SStefano Zampini     N          = P->cmap->N;
7173ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71744e84afc0SStefano Zampini     break;
71754e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71764e84afc0SStefano Zampini     P          = product->A;
71774e84afc0SStefano Zampini     A          = product->B;
71784e84afc0SStefano Zampini     m          = P->cmap->n;
71794e84afc0SStefano Zampini     n          = A->cmap->n;
71804e84afc0SStefano Zampini     M          = P->cmap->N;
71814e84afc0SStefano Zampini     N          = A->cmap->N;
71824e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71834e84afc0SStefano Zampini     break;
71844e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71854e84afc0SStefano Zampini     A          = product->A;
71864e84afc0SStefano Zampini     P          = product->B;
71874e84afc0SStefano Zampini     m          = P->cmap->n;
71884e84afc0SStefano Zampini     n          = P->cmap->n;
71894e84afc0SStefano Zampini     M          = P->cmap->N;
71904e84afc0SStefano Zampini     N          = P->cmap->N;
71914e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71924e84afc0SStefano Zampini     break;
7193d71ae5a4SJacob Faibussowitsch   default:
7194d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71954e84afc0SStefano Zampini   }
71969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71974e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71984e84afc0SStefano Zampini 
71994e84afc0SStefano Zampini   /* defaults */
72004e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72014e84afc0SStefano Zampini     mp[i]    = NULL;
72024e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72034e84afc0SStefano Zampini     rmapt[i] = -1;
72044e84afc0SStefano Zampini     cmapt[i] = -1;
72054e84afc0SStefano Zampini     rmapa[i] = NULL;
72064e84afc0SStefano Zampini     cmapa[i] = NULL;
72074e84afc0SStefano Zampini   }
72084e84afc0SStefano Zampini 
72094e84afc0SStefano Zampini   /* customization */
72109566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72114e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72124e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72134e84afc0SStefano Zampini     if (product->api_user) {
7214d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72159566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72169566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7217d0609cedSBarry Smith       PetscOptionsEnd();
72184e84afc0SStefano Zampini     } else {
7219d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72209566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72219566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7222d0609cedSBarry Smith       PetscOptionsEnd();
7223abb89eb1SStefano Zampini     }
7224abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7225abb89eb1SStefano Zampini     if (product->api_user) {
7226d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72279566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7228d0609cedSBarry Smith       PetscOptionsEnd();
7229abb89eb1SStefano Zampini     } else {
7230d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72319566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7232d0609cedSBarry Smith       PetscOptionsEnd();
72334e84afc0SStefano Zampini     }
72344e84afc0SStefano Zampini   }
72354e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72364e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72409566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72419566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7242ddea5d60SJunchao Zhang 
7243ddea5d60SJunchao Zhang   cp = 0;
72444e84afc0SStefano Zampini   switch (ptype) {
72454e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72469566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72474e84afc0SStefano Zampini 
7248ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7249ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72504e84afc0SStefano Zampini       /* P is product->B */
72519566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72529566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72539566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72549566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72559566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72569566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72579566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72584e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72609566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72619566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72624e84afc0SStefano Zampini       rmapt[cp] = 1;
72634e84afc0SStefano Zampini       cmapt[cp] = 2;
72644e84afc0SStefano Zampini       cmapa[cp] = globidx;
72654e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72664e84afc0SStefano Zampini       cp++;
7267ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72774e84afc0SStefano Zampini       rmapt[cp] = 1;
72784e84afc0SStefano Zampini       cmapt[cp] = 1;
72794e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72804e84afc0SStefano Zampini       cp++;
72819566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72829566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72839566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72849566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72859566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72869566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72874e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72889566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72899566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72904e84afc0SStefano Zampini       rmapt[cp] = 1;
72914e84afc0SStefano Zampini       cmapt[cp] = 2;
72924e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72934e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72944e84afc0SStefano Zampini       cp++;
72954e84afc0SStefano Zampini     }
7296ddea5d60SJunchao Zhang 
7297ddea5d60SJunchao Zhang     /* A_off * P_other */
72984e84afc0SStefano Zampini     if (mmdata->P_oth) {
72999566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73009566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7301f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73029566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73039566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73049566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73069566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73079566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73089566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73094e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73109566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73119566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73124e84afc0SStefano Zampini       rmapt[cp] = 1;
73134e84afc0SStefano Zampini       cmapt[cp] = 2;
73144e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73154e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73164e84afc0SStefano Zampini       cp++;
73174e84afc0SStefano Zampini     }
73184e84afc0SStefano Zampini     break;
7319ddea5d60SJunchao Zhang 
73204e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73214e84afc0SStefano Zampini     /* A is product->B */
73229566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7323ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73249566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73259566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73269566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73279566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73289566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73299566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73304e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73319566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73329566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73339566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73344e84afc0SStefano Zampini       rmapt[cp] = 2;
73354e84afc0SStefano Zampini       rmapa[cp] = globidx;
73364e84afc0SStefano Zampini       cmapt[cp] = 2;
73374e84afc0SStefano Zampini       cmapa[cp] = globidx;
73384e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73394e84afc0SStefano Zampini       cp++;
73404e84afc0SStefano Zampini     } else {
73419566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73429566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73439566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73449566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73459566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73469566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73474e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73489566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73499566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73509566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73514e84afc0SStefano Zampini       rmapt[cp] = 1;
73524e84afc0SStefano Zampini       cmapt[cp] = 2;
73534e84afc0SStefano Zampini       cmapa[cp] = globidx;
73544e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73554e84afc0SStefano Zampini       cp++;
73569566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73589566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73599566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73609566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73619566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73624e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73639566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73649566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73654e84afc0SStefano Zampini       rmapt[cp] = 2;
73664e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73674e84afc0SStefano Zampini       cmapt[cp] = 2;
73684e84afc0SStefano Zampini       cmapa[cp] = globidx;
73694e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73704e84afc0SStefano Zampini       cp++;
73714e84afc0SStefano Zampini     }
73724e84afc0SStefano Zampini     break;
73734e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73749566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73754e84afc0SStefano Zampini     /* P is product->B */
73769566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73779566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73789566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73799566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73809566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73819566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73829566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73834e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73849566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73859566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73869566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73874e84afc0SStefano Zampini     rmapt[cp] = 2;
73884e84afc0SStefano Zampini     rmapa[cp] = globidx;
73894e84afc0SStefano Zampini     cmapt[cp] = 2;
73904e84afc0SStefano Zampini     cmapa[cp] = globidx;
73914e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73924e84afc0SStefano Zampini     cp++;
73934e84afc0SStefano Zampini     if (mmdata->P_oth) {
73949566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73959566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7396f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73979566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73989566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73999566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74009566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74019566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74029566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74039566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74044e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74069566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74074e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74084e84afc0SStefano Zampini       cp++;
74099566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74109566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74119566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74129566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74139566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74149566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74154e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74169566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74179566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74184e84afc0SStefano Zampini       rmapt[cp] = 2;
74194e84afc0SStefano Zampini       rmapa[cp] = globidx;
74204e84afc0SStefano Zampini       cmapt[cp] = 2;
74214e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74224e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74234e84afc0SStefano Zampini       cp++;
74244e84afc0SStefano Zampini     }
74254e84afc0SStefano Zampini     break;
7426d71ae5a4SJacob Faibussowitsch   default:
7427d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74284e84afc0SStefano Zampini   }
74294e84afc0SStefano Zampini   /* sanity check */
74309371c9d4SSatish Balay   if (size > 1)
74319371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74324e84afc0SStefano Zampini 
74339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7434ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7435ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7436ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7437ddea5d60SJunchao Zhang   }
74384e84afc0SStefano Zampini   mmdata->cp             = cp;
74394e84afc0SStefano Zampini   C->product->data       = mmdata;
74404e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74414e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74424e84afc0SStefano Zampini 
7443c215019aSStefano Zampini   /* memory type */
7444c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74459566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7446d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74479566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7448c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7449d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74503214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7451c215019aSStefano Zampini 
74524e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7453ddea5d60SJunchao Zhang 
7454ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7455ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7456ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7457ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7458ddea5d60SJunchao Zhang   */
74594e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74604e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74614e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7462ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74634e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74644e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74654e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74664e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74674e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74684e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74694e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74704e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7471ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7472ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74734e84afc0SStefano Zampini       }
74744e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74754e84afc0SStefano Zampini   }
7476ddea5d60SJunchao Zhang 
7477ddea5d60SJunchao Zhang   /*
7478ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7479ddea5d60SJunchao Zhang 
7480ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7481ddea5d60SJunchao Zhang 
7482d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7483ddea5d60SJunchao Zhang 
7484ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7485ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7486ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7487ddea5d60SJunchao Zhang 
7488ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7489da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7490ddea5d60SJunchao Zhang   */
74919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7493ddea5d60SJunchao Zhang 
7494ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7495ddea5d60SJunchao Zhang   if (hasoffproc) {
74964e84afc0SStefano Zampini     PetscSF  msf;
74974e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74984e84afc0SStefano Zampini 
74999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7502ddea5d60SJunchao Zhang 
75034e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75044e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75054e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75064e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7507ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75084e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75094e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75104e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75114e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75124e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75134e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75144e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75154e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75164e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75174e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75184e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75194e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75204e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7521ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75224e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75234e84afc0SStefano Zampini               *coi++    = gr;
75244e84afc0SStefano Zampini               *idxoff++ = j;
75254e84afc0SStefano Zampini             }
75264e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75274e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75284e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75294e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75304e84afc0SStefano Zampini             } else { /* offdiag */
75314e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75324e84afc0SStefano Zampini             }
75334e84afc0SStefano Zampini             ncoo_o += nz;
7534ddea5d60SJunchao Zhang           } else { /* this is a local row */
75354e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75364e84afc0SStefano Zampini           }
75374e84afc0SStefano Zampini         }
75384e84afc0SStefano Zampini       }
75394e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75404e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75414e84afc0SStefano Zampini     }
75424e84afc0SStefano Zampini 
75439566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75449566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75459566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75469566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75474e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75489566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75499566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75509566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75519566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75529566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75539566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7554ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75559566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75564e84afc0SStefano Zampini     coo_i = coo_i2;
75574e84afc0SStefano Zampini     coo_j = coo_j2;
75584e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75594e84afc0SStefano Zampini     ncoo = ncoo_d;
75609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7561c215019aSStefano Zampini 
75629566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75639566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75649566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75654e84afc0SStefano Zampini   }
7566c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75674e84afc0SStefano Zampini 
7568ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75694e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75704e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75714e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75724e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75734e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75744e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75754e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75764e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75774e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75784e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75794e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75804e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75814e84afc0SStefano Zampini 
75824e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7583ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7584ddea5d60SJunchao Zhang       /* fill coo_i */
75854e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75864e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75874e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75884e84afc0SStefano Zampini       }
7589ddea5d60SJunchao Zhang       /* fill coo_j */
7590ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75919566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7592ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7593ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7594ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75954e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75964e84afc0SStefano Zampini       }
75974e84afc0SStefano Zampini       ncoo_d += mm->nz;
7598ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75994e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76004e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76014e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76024e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7603ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76044e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7605ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76064e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76074e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76084e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7609ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76104e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76114e84afc0SStefano Zampini           }
76124e84afc0SStefano Zampini           ncoo_d += nz;
76134e84afc0SStefano Zampini         }
76144e84afc0SStefano Zampini       }
76154e84afc0SStefano Zampini     }
76164e84afc0SStefano Zampini   }
761748a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76189566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
761948a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76209566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7621ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76229566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76234e84afc0SStefano Zampini 
76244e84afc0SStefano Zampini   /* preallocate with COO data */
76259566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76284e84afc0SStefano Zampini }
76294e84afc0SStefano Zampini 
7630d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7631d71ae5a4SJacob Faibussowitsch {
76324e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76334e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76344e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7635abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76364e84afc0SStefano Zampini #else
76374e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76384e84afc0SStefano Zampini #endif
76394e84afc0SStefano Zampini 
76404e84afc0SStefano Zampini   PetscFunctionBegin;
76414e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76424e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
764348a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
764465e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7645abb89eb1SStefano Zampini     switch (product->type) {
7646abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7647abb89eb1SStefano Zampini       if (product->api_user) {
7648d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76499566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7650d0609cedSBarry Smith         PetscOptionsEnd();
7651abb89eb1SStefano Zampini       } else {
7652d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76539566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7654d0609cedSBarry Smith         PetscOptionsEnd();
7655abb89eb1SStefano Zampini       }
7656abb89eb1SStefano Zampini       break;
7657abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7658abb89eb1SStefano Zampini       if (product->api_user) {
7659d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76609566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7661d0609cedSBarry Smith         PetscOptionsEnd();
7662abb89eb1SStefano Zampini       } else {
7663d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76649566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7665d0609cedSBarry Smith         PetscOptionsEnd();
7666abb89eb1SStefano Zampini       }
7667abb89eb1SStefano Zampini       break;
7668abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7669abb89eb1SStefano Zampini       if (product->api_user) {
7670d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76719566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7672d0609cedSBarry Smith         PetscOptionsEnd();
7673abb89eb1SStefano Zampini       } else {
7674d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76759566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7676d0609cedSBarry Smith         PetscOptionsEnd();
7677abb89eb1SStefano Zampini       }
7678abb89eb1SStefano Zampini       break;
7679d71ae5a4SJacob Faibussowitsch     default:
7680d71ae5a4SJacob Faibussowitsch       break;
7681abb89eb1SStefano Zampini     }
7682abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7683abb89eb1SStefano Zampini   }
76844e84afc0SStefano Zampini #endif
76854e84afc0SStefano Zampini   if (match) {
76864e84afc0SStefano Zampini     switch (product->type) {
76874e84afc0SStefano Zampini     case MATPRODUCT_AB:
76884e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7689d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7690d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7691d71ae5a4SJacob Faibussowitsch       break;
7692d71ae5a4SJacob Faibussowitsch     default:
7693d71ae5a4SJacob Faibussowitsch       break;
76944e84afc0SStefano Zampini     }
76954e84afc0SStefano Zampini   }
76964e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76979566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
769981824310SBarry Smith }
770098921bdaSJacob Faibussowitsch 
770198921bdaSJacob Faibussowitsch /*
770272833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
770372833a62Smarkadams4 
770472833a62Smarkadams4    n - the number of block indices in cc[]
770572833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
770672833a62Smarkadams4 */
7707d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7708d71ae5a4SJacob Faibussowitsch {
770972833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
771072833a62Smarkadams4   const PetscInt *idx;
771172833a62Smarkadams4 
771272833a62Smarkadams4   PetscFunctionBegin;
771372833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
771472833a62Smarkadams4   if (nidx) {
771572833a62Smarkadams4     cnt     = 0;
771672833a62Smarkadams4     cc[cnt] = idx[0] / bs;
771772833a62Smarkadams4     for (j = 1; j < nidx; j++) {
771872833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
771972833a62Smarkadams4     }
772072833a62Smarkadams4   }
772172833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
772272833a62Smarkadams4   *n = cnt + 1;
77233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772472833a62Smarkadams4 }
772572833a62Smarkadams4 
772672833a62Smarkadams4 /*
772772833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
772872833a62Smarkadams4 
772972833a62Smarkadams4     ncollapsed - the number of block indices
773072833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
773172833a62Smarkadams4 */
7732d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7733d71ae5a4SJacob Faibussowitsch {
773472833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
773572833a62Smarkadams4 
773672833a62Smarkadams4   PetscFunctionBegin;
773772833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
773872833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
773972833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
774072833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77419371c9d4SSatish Balay     cprevtmp = cprev;
77429371c9d4SSatish Balay     cprev    = merged;
77439371c9d4SSatish Balay     merged   = cprevtmp;
774472833a62Smarkadams4   }
774572833a62Smarkadams4   *ncollapsed = nprev;
774672833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
774872833a62Smarkadams4 }
774972833a62Smarkadams4 
77502d776b49SBarry Smith /*
775172833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
775272833a62Smarkadams4 
775372833a62Smarkadams4  Input Parameter:
775472833a62Smarkadams4  . Amat - matrix
775572833a62Smarkadams4  - symmetrize - make the result symmetric
775672833a62Smarkadams4  + scale - scale with diagonal
775772833a62Smarkadams4 
775872833a62Smarkadams4  Output Parameter:
775972833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
776072833a62Smarkadams4 
776172833a62Smarkadams4 */
7762e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7763d71ae5a4SJacob Faibussowitsch {
776472833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
776572833a62Smarkadams4   MPI_Comm  comm;
776672833a62Smarkadams4   Mat       Gmat;
776772833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
776872833a62Smarkadams4   Mat       a, b, c;
776972833a62Smarkadams4   MatType   jtype;
777072833a62Smarkadams4 
777172833a62Smarkadams4   PetscFunctionBegin;
777272833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
777372833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
777472833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
777572833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
777672833a62Smarkadams4   nloc = (Iend - Istart) / bs;
777772833a62Smarkadams4 
777872833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
777972833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
778072833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
778172833a62Smarkadams4 
778272833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
778372833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
778472833a62Smarkadams4      implementation */
778572833a62Smarkadams4   if (bs > 1) {
778672833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
778772833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
778872833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
778972833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
779072833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
779172833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
779272833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77932cf69117Smarkadams4       MatScalar *aa, val, *AA;
77942cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77959371c9d4SSatish Balay       if (isseqaij) {
77969371c9d4SSatish Balay         a = Amat;
77979371c9d4SSatish Balay         b = NULL;
77989371c9d4SSatish Balay       } else {
779972833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78009371c9d4SSatish Balay         a             = d->A;
78019371c9d4SSatish Balay         b             = d->B;
780272833a62Smarkadams4       }
780372833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
780472833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
780572833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78062cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
780759ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
780859ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
780959ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
781059ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
781159ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
781272833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
781359ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
781459ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
781559ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
781659ee9f9fSPierre Jolivet             else {
781759ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
781859ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
781959ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
782072833a62Smarkadams4               }
782159ee9f9fSPierre Jolivet             }
782259ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
782359ee9f9fSPierre Jolivet           }
782459ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
782572833a62Smarkadams4           if (!ok) {
782672833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
782759ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
782872833a62Smarkadams4             goto old_bs;
782972833a62Smarkadams4           }
783072833a62Smarkadams4         }
783172833a62Smarkadams4       }
783272833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
783372833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
783472833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78352cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
783672833a62Smarkadams4       // diag
783772833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
783872833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
783972833a62Smarkadams4         ai               = aseq->i;
784072833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
784172833a62Smarkadams4         aj               = aseq->j + ai[brow];
784272833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
784372833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
784472833a62Smarkadams4           val        = 0;
7845e02fb3cdSMark Adams           if (index_size == 0) {
784672833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
784772833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
784872833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
784972833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
785072833a62Smarkadams4               }
785172833a62Smarkadams4             }
7852e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7853e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7854e02fb3cdSMark Adams               int ii = index[iii];
7855e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7856e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7857e02fb3cdSMark Adams                 int jj = index[jjj];
7858cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7859e02fb3cdSMark Adams               }
7860e02fb3cdSMark Adams             }
7861e02fb3cdSMark Adams           }
786259ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
786372833a62Smarkadams4           AA[k / bs] = val;
786472833a62Smarkadams4         }
786572833a62Smarkadams4         grow = Istart / bs + brow / bs;
786672833a62Smarkadams4         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES));
786772833a62Smarkadams4       }
786872833a62Smarkadams4       // off-diag
786972833a62Smarkadams4       if (ismpiaij) {
787072833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
787172833a62Smarkadams4         const PetscScalar *vals;
787272833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
787372833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
787472833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
787572833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
787672833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
787759ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
787872833a62Smarkadams4             AA[k / bs] = 0;
787972833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
788072833a62Smarkadams4           }
788172833a62Smarkadams4           nc = ncols / bs;
788272833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7883e02fb3cdSMark Adams           if (index_size == 0) {
788472833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
788572833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
788672833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
788772833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
788859ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
788972833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
789072833a62Smarkadams4                 }
789172833a62Smarkadams4               }
789272833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
789372833a62Smarkadams4             }
7894e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7895e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7896e02fb3cdSMark Adams               int ii = index[iii];
7897e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7898e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7899e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7900e02fb3cdSMark Adams                   int jj = index[jjj];
7901e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7902e02fb3cdSMark Adams                 }
7903e02fb3cdSMark Adams               }
7904e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7905e02fb3cdSMark Adams             }
7906e02fb3cdSMark Adams           }
790772833a62Smarkadams4           grow = Istart / bs + brow / bs;
790872833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES));
790972833a62Smarkadams4         }
791072833a62Smarkadams4       }
791172833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
791272833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79132cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
791472833a62Smarkadams4     } else {
791572833a62Smarkadams4       const PetscScalar *vals;
791672833a62Smarkadams4       const PetscInt    *idx;
791772833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
791872833a62Smarkadams4     old_bs:
791972833a62Smarkadams4       /*
792072833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
792172833a62Smarkadams4        */
792272833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
792372833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
792472833a62Smarkadams4       if (isseqaij) {
792572833a62Smarkadams4         PetscInt max_d_nnz;
792672833a62Smarkadams4         /*
792772833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
792872833a62Smarkadams4          */
792972833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
793072833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793172833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793248a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793372833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793472833a62Smarkadams4       } else if (ismpiaij) {
793572833a62Smarkadams4         Mat             Daij, Oaij;
793672833a62Smarkadams4         const PetscInt *garray;
793772833a62Smarkadams4         PetscInt        max_d_nnz;
793872833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
793972833a62Smarkadams4         /*
794072833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
794172833a62Smarkadams4          */
794272833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
794372833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794472833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
794548a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
794672833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794772833a62Smarkadams4         /*
794872833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
794972833a62Smarkadams4          */
795072833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
795172833a62Smarkadams4           o_nnz[jj] = 0;
795272833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
795372833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795472833a62Smarkadams4             o_nnz[jj] += ncols;
795572833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795672833a62Smarkadams4           }
795772833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
795872833a62Smarkadams4         }
795972833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
796072833a62Smarkadams4       /* get scalar copy (norms) of matrix */
796172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
796272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
796372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
796472833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
796572833a62Smarkadams4         PetscInt dest_row = Ii / bs;
796672833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
796772833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
796872833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
796972833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
797072833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
797172833a62Smarkadams4         }
797272833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
797372833a62Smarkadams4       }
797472833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797572833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
797672833a62Smarkadams4     }
797772833a62Smarkadams4   } else {
79782d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79792d776b49SBarry Smith     else {
79802d776b49SBarry Smith       Gmat = Amat;
79812d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79822d776b49SBarry Smith     }
79839371c9d4SSatish Balay     if (isseqaij) {
79849371c9d4SSatish Balay       a = Gmat;
79859371c9d4SSatish Balay       b = NULL;
79869371c9d4SSatish Balay     } else {
798772833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79889371c9d4SSatish Balay       a             = d->A;
79899371c9d4SSatish Balay       b             = d->B;
799072833a62Smarkadams4     }
79912d776b49SBarry Smith     if (filter >= 0 || scale) {
79922d776b49SBarry Smith       /* take absolute value of each entry */
799372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
799472833a62Smarkadams4         MatInfo      info;
799572833a62Smarkadams4         PetscScalar *avals;
799672833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
799772833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
799872833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
799972833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
800072833a62Smarkadams4       }
800172833a62Smarkadams4     }
80022d776b49SBarry Smith   }
800372833a62Smarkadams4   if (symmetrize) {
8004b94d7dedSBarry Smith     PetscBool isset, issym;
8005b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8006b94d7dedSBarry Smith     if (!isset || !issym) {
800772833a62Smarkadams4       Mat matTrans;
800872833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80091fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
801072833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
801172833a62Smarkadams4     }
801272833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80132d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801472833a62Smarkadams4   if (scale) {
801572833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
801672833a62Smarkadams4     Vec diag;
801772833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
801872833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
801972833a62Smarkadams4     PetscCall(VecReciprocal(diag));
802072833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802172833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802272833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802372833a62Smarkadams4   }
802472833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80252d776b49SBarry Smith 
80262d776b49SBarry Smith   if (filter >= 0) {
80272ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80282ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80292d776b49SBarry Smith   }
803072833a62Smarkadams4   *a_Gmat = Gmat;
80313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803272833a62Smarkadams4 }
803372833a62Smarkadams4 
803472833a62Smarkadams4 /*
803598921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
803698921bdaSJacob Faibussowitsch */
803798921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h>
803898921bdaSJacob Faibussowitsch 
803998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80409566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80419566063dSJacob Faibussowitsch #undef PetscCall
80429371c9d4SSatish Balay #define PetscCall(...) \
80439371c9d4SSatish Balay   do { \
80445f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804598921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
804698921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
804798921bdaSJacob Faibussowitsch       return; \
804898921bdaSJacob Faibussowitsch     } \
804998921bdaSJacob Faibussowitsch   } while (0)
805098921bdaSJacob Faibussowitsch 
805198921bdaSJacob Faibussowitsch #undef SETERRQ
80529371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80539371c9d4SSatish Balay   do { \
805498921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805598921bdaSJacob Faibussowitsch     return; \
805698921bdaSJacob Faibussowitsch   } while (0)
805798921bdaSJacob Faibussowitsch 
805898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
805998921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
806098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
806198921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
806298921bdaSJacob Faibussowitsch #else
806398921bdaSJacob Faibussowitsch #endif
8064d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8065d71ae5a4SJacob Faibussowitsch {
806698921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
806798921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
806898921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
806998921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
807098921bdaSJacob Faibussowitsch   PetscScalar value;
807198921bdaSJacob Faibussowitsch 
807298921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
807398921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80745f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807598921bdaSJacob Faibussowitsch   {
807698921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
807798921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
807898921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
807998921bdaSJacob Faibussowitsch 
808098921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
808198921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
808298921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
808398921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
808498921bdaSJacob Faibussowitsch     MatScalar  *aa;
8085f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
808698921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
808798921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
808898921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
808998921bdaSJacob Faibussowitsch     MatScalar  *ba;
809098921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
809198921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
809298921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
809398921bdaSJacob Faibussowitsch 
809498921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809598921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
809698921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
809798921bdaSJacob Faibussowitsch 
809898921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80999566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
810198921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
810298921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81036bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
810498921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810598921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
810698921bdaSJacob Faibussowitsch         lastcol1 = -1;
810798921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
810898921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
810998921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
811098921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
811198921bdaSJacob Faibussowitsch         low1     = 0;
811298921bdaSJacob Faibussowitsch         high1    = nrow1;
811398921bdaSJacob Faibussowitsch         lastcol2 = -1;
811498921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811598921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
811698921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
811798921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
811898921bdaSJacob Faibussowitsch         low2     = 0;
811998921bdaSJacob Faibussowitsch         high2    = nrow2;
812098921bdaSJacob Faibussowitsch 
812198921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
812298921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
812398921bdaSJacob Faibussowitsch           else value = v[i + j * m];
812498921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812598921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
812698921bdaSJacob Faibussowitsch             col = in[j] - cstart;
812798921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
812898921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
812998921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
813063a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
813198921bdaSJacob Faibussowitsch           } else {
813298921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
813348a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
813498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8135eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
813698921bdaSJacob Faibussowitsch               col--;
813798921bdaSJacob Faibussowitsch #else
813898921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
813998921bdaSJacob Faibussowitsch #endif
8140f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
81419566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
814298921bdaSJacob Faibussowitsch                 col = in[j];
814398921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
814498921bdaSJacob Faibussowitsch                 B        = aij->B;
814598921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81469371c9d4SSatish Balay                 bimax    = b->imax;
81479371c9d4SSatish Balay                 bi       = b->i;
81489371c9d4SSatish Balay                 bilen    = b->ilen;
81499371c9d4SSatish Balay                 bj       = b->j;
815098921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
815198921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
815298921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
815398921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
815498921bdaSJacob Faibussowitsch                 low2     = 0;
815598921bdaSJacob Faibussowitsch                 high2    = nrow2;
815698921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
815798921bdaSJacob Faibussowitsch                 ba       = b->a;
815898921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
815998921bdaSJacob Faibussowitsch               }
816098921bdaSJacob Faibussowitsch             } else col = in[j];
816198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
816298921bdaSJacob Faibussowitsch           }
816398921bdaSJacob Faibussowitsch         }
816498921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816598921bdaSJacob Faibussowitsch         if (roworiented) {
81669566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816798921bdaSJacob Faibussowitsch         } else {
81689566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816998921bdaSJacob Faibussowitsch         }
817098921bdaSJacob Faibussowitsch       }
817198921bdaSJacob Faibussowitsch     }
81729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
817498921bdaSJacob Faibussowitsch   }
817598921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
817698921bdaSJacob Faibussowitsch }
817772833a62Smarkadams4 
817898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
817998921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
818098921bdaSJacob Faibussowitsch  * original definitions */
81819566063dSJacob Faibussowitsch #undef PetscCall
818298921bdaSJacob Faibussowitsch #undef SETERRQ
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