1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 2161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2870716a85fSBarry Smith 2880716a85fSBarry Smith PetscFunctionBegin; 2899566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 295857cbf51SRichard Tran Mills if (type == NORM_2) { 296ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 297ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 298857cbf51SRichard Tran Mills } else if (type == NORM_1) { 299ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 300ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 301857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 302ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 303ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 304857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 305ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 306ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 307857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 308ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 309ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 310857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 311857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3130716a85fSBarry Smith } else { 3141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 319857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3210716a85fSBarry Smith } 3223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3230716a85fSBarry Smith } 3240716a85fSBarry Smith 325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 326d71ae5a4SJacob Faibussowitsch { 327e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 328e52d2c62SBarry Smith IS sis, gis; 329e52d2c62SBarry Smith const PetscInt *isis, *igis; 330e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 331e52d2c62SBarry Smith 332e52d2c62SBarry Smith PetscFunctionBegin; 3339566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3349566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3359566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 339e52d2c62SBarry Smith 3409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 343e52d2c62SBarry Smith n = ngis + nsis; 3449566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3459566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 346e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 348e52d2c62SBarry Smith 3499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354e52d2c62SBarry Smith } 355e52d2c62SBarry Smith 356dd6ea824SBarry Smith /* 3570f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3590f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36172fa4726SStefano Zampini has an order N integer array but is fast to access. 3629e25ed09SBarry Smith */ 363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 364d71ae5a4SJacob Faibussowitsch { 36544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 366d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 367dbb450caSBarry Smith 3683a40ed3dSBarry Smith PetscFunctionBegin; 36908401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 371eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 372c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 373b1fc9764SSatish Balay #else 3749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 375905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 376b1fc9764SSatish Balay #endif 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3789e25ed09SBarry Smith } 3799e25ed09SBarry Smith 380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 381a8f51744SPierre Jolivet do { \ 382db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 383db4deed7SKarl Rupp else high1 = nrow1; \ 384fd3458f5SBarry Smith lastcol1 = col; \ 385fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 386fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 387fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 388fd3458f5SBarry Smith else low1 = t; \ 389ba4e3ef2SSatish Balay } \ 390fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 391fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 392fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3930c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3940c0d7e18SFande Kong ap1[_i] += value; \ 3950c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3960c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3979371c9d4SSatish Balay } else ap1[_i] = value; \ 39830770e4dSSatish Balay goto a_noinsert; \ 3990520107fSSatish Balay } \ 4000520107fSSatish Balay } \ 4019371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4029371c9d4SSatish Balay low1 = 0; \ 4039371c9d4SSatish Balay high1 = nrow1; \ 4049371c9d4SSatish Balay goto a_noinsert; \ 4059371c9d4SSatish Balay } \ 4069371c9d4SSatish Balay if (nonew == 1) { \ 4079371c9d4SSatish Balay low1 = 0; \ 4089371c9d4SSatish Balay high1 = nrow1; \ 4099371c9d4SSatish Balay goto a_noinsert; \ 4109371c9d4SSatish Balay } \ 41108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 412fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4139371c9d4SSatish Balay N = nrow1++ - 1; \ 4149371c9d4SSatish Balay a->nz++; \ 4159371c9d4SSatish Balay high1++; \ 4160520107fSSatish Balay /* shift up all the later entries in this row */ \ 4179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 419fd3458f5SBarry Smith rp1[_i] = col; \ 420fd3458f5SBarry Smith ap1[_i] = value; \ 421e56f5c9eSBarry Smith A->nonzerostate++; \ 42230770e4dSSatish Balay a_noinsert:; \ 423fd3458f5SBarry Smith ailen[row] = nrow1; \ 424a8f51744SPierre Jolivet } while (0) 4250a198c4cSBarry Smith 426d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 427a8f51744SPierre Jolivet do { \ 428db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 429db4deed7SKarl Rupp else high2 = nrow2; \ 430fd3458f5SBarry Smith lastcol2 = col; \ 431fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 432fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 433fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 434fd3458f5SBarry Smith else low2 = t; \ 435ba4e3ef2SSatish Balay } \ 436fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 437fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 438fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4390c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4400c0d7e18SFande Kong ap2[_i] += value; \ 4410c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4429371c9d4SSatish Balay } else ap2[_i] = value; \ 44330770e4dSSatish Balay goto b_noinsert; \ 44430770e4dSSatish Balay } \ 44530770e4dSSatish Balay } \ 4469371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4479371c9d4SSatish Balay low2 = 0; \ 4489371c9d4SSatish Balay high2 = nrow2; \ 4499371c9d4SSatish Balay goto b_noinsert; \ 4509371c9d4SSatish Balay } \ 4519371c9d4SSatish Balay if (nonew == 1) { \ 4529371c9d4SSatish Balay low2 = 0; \ 4539371c9d4SSatish Balay high2 = nrow2; \ 4549371c9d4SSatish Balay goto b_noinsert; \ 4559371c9d4SSatish Balay } \ 45608401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 457fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4589371c9d4SSatish Balay N = nrow2++ - 1; \ 4599371c9d4SSatish Balay b->nz++; \ 4609371c9d4SSatish Balay high2++; \ 46130770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 464fd3458f5SBarry Smith rp2[_i] = col; \ 465fd3458f5SBarry Smith ap2[_i] = value; \ 466e56f5c9eSBarry Smith B->nonzerostate++; \ 46730770e4dSSatish Balay b_noinsert:; \ 468fd3458f5SBarry Smith bilen[row] = nrow2; \ 469a8f51744SPierre Jolivet } while (0) 47030770e4dSSatish Balay 471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 472d71ae5a4SJacob Faibussowitsch { 4732fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4742fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4752fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 476fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4772fd7e33dSBarry Smith 4782fd7e33dSBarry Smith PetscFunctionBegin; 4792fd7e33dSBarry Smith /* code only works for square matrices A */ 4802fd7e33dSBarry Smith 4812fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4832fd7e33dSBarry Smith row = row - diag; 4842fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4852fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4862fd7e33dSBarry Smith } 487fff043a9SJunchao Zhang if (l) { 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 491fff043a9SJunchao Zhang } 4922fd7e33dSBarry Smith 4932fd7e33dSBarry Smith /* diagonal part */ 494fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 498fff043a9SJunchao Zhang } 4992fd7e33dSBarry Smith 5002fd7e33dSBarry Smith /* right of diagonal part */ 501fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 505fff043a9SJunchao Zhang } 5063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5072fd7e33dSBarry Smith } 5082fd7e33dSBarry Smith 509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 510d71ae5a4SJacob Faibussowitsch { 51144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 512071fcb05SBarry Smith PetscScalar value = 0.0; 513d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 514d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 515ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5168a729477SBarry Smith 5170520107fSSatish Balay /* Some Variables required in the macro */ 5184ee7247eSSatish Balay Mat A = aij->A; 5194ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 521ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52230770e4dSSatish Balay Mat B = aij->B; 52330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 524d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 525ce496241SStefano Zampini MatScalar *aa, *ba; 526fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5278d76821aSHong Zhang PetscInt nonew; 528a77337e4SBarry Smith MatScalar *ap1, *ap2; 5294ee7247eSSatish Balay 5303a40ed3dSBarry Smith PetscFunctionBegin; 5319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5338a729477SBarry Smith for (i = 0; i < m; i++) { 5345ef9f2a5SBarry Smith if (im[i] < 0) continue; 53508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5364b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5374b0e389bSBarry Smith row = im[i] - rstart; 538fd3458f5SBarry Smith lastcol1 = -1; 5398e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5408e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 541fd3458f5SBarry Smith rmax1 = aimax[row]; 542fd3458f5SBarry Smith nrow1 = ailen[row]; 543fd3458f5SBarry Smith low1 = 0; 544fd3458f5SBarry Smith high1 = nrow1; 545fd3458f5SBarry Smith lastcol2 = -1; 5468e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5478e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 548fd3458f5SBarry Smith rmax2 = bimax[row]; 549d498b1e9SBarry Smith nrow2 = bilen[row]; 550fd3458f5SBarry Smith low2 = 0; 551fd3458f5SBarry Smith high2 = nrow2; 552fd3458f5SBarry Smith 5531eb62cbbSBarry Smith for (j = 0; j < n; j++) { 554071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 555c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 556fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 557fd3458f5SBarry Smith col = in[j] - cstart; 5588d76821aSHong Zhang nonew = a->nonew; 559d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 560f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 561f7d195e4SLawrence Mitchell continue; 562f7d195e4SLawrence Mitchell } else { 563f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 564227d817aSBarry Smith if (mat->was_assembled) { 56548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 567eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 568fa46199cSSatish Balay col--; 569b1fc9764SSatish Balay #else 570905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 571b1fc9764SSatish Balay #endif 572f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 5739566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5744b0e389bSBarry Smith col = in[j]; 5759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 576f9508a3cSSatish Balay B = aij->B; 577f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5789371c9d4SSatish Balay bimax = b->imax; 5799371c9d4SSatish Balay bi = b->i; 5809371c9d4SSatish Balay bilen = b->ilen; 5819371c9d4SSatish Balay bj = b->j; 5829371c9d4SSatish Balay ba = b->a; 583d498b1e9SBarry Smith rp2 = bj + bi[row]; 584d498b1e9SBarry Smith ap2 = ba + bi[row]; 585d498b1e9SBarry Smith rmax2 = bimax[row]; 586d498b1e9SBarry Smith nrow2 = bilen[row]; 587d498b1e9SBarry Smith low2 = 0; 588d498b1e9SBarry Smith high2 = nrow2; 589d0f46423SBarry Smith bm = aij->B->rmap->n; 590f9508a3cSSatish Balay ba = b->a; 591d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 592f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5950587a0fcSBarry Smith } 596c48de900SBarry Smith } else col = in[j]; 5978d76821aSHong Zhang nonew = b->nonew; 598d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5991eb62cbbSBarry Smith } 6001eb62cbbSBarry Smith } 6015ef9f2a5SBarry Smith } else { 60228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60390f02eecSBarry Smith if (!aij->donotstash) { 6045080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 605d36fbae8SSatish Balay if (roworiented) { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 607d36fbae8SSatish Balay } else { 6088e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6094b0e389bSBarry Smith } 6101eb62cbbSBarry Smith } 6118a729477SBarry Smith } 61290f02eecSBarry Smith } 6135519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6168a729477SBarry Smith } 6178a729477SBarry Smith 6182b08fdbeSandi selinger /* 619904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6202b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 621904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6222b08fdbeSandi selinger */ 623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 624d71ae5a4SJacob Faibussowitsch { 625904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 626904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6274cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 628904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 629904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 630904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 631904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 632904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6336dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 634904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 635904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 636904d1e70Sandi selinger 637904d1e70Sandi selinger PetscFunctionBegin; 638904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 639904d1e70Sandi selinger for (j = 0; j < am; j++) { 640904d1e70Sandi selinger dnz = onz = 0; 641904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6426dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 643904d1e70Sandi selinger /* If column is in the diagonal */ 644904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 645904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 646904d1e70Sandi selinger dnz++; 647904d1e70Sandi selinger } else { /* off-diagonal entries */ 648904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 649904d1e70Sandi selinger onz++; 650904d1e70Sandi selinger } 651904d1e70Sandi selinger } 652904d1e70Sandi selinger ailen[j] = dnz; 653904d1e70Sandi selinger bilen[j] = onz; 654904d1e70Sandi selinger } 6553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 656904d1e70Sandi selinger } 657904d1e70Sandi selinger 658904d1e70Sandi selinger /* 659904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 660904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6611de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6621de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6631de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 664904d1e70Sandi selinger */ 665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 666d71ae5a4SJacob Faibussowitsch { 6673a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6683a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6694cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 670f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6713a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6723a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6733a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6743a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6753a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6766dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6771de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 678904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 679904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6803a063d27Sandi selinger 6813a063d27Sandi selinger PetscFunctionBegin; 6823a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6833a063d27Sandi selinger for (j = 0; j < am; j++) { 684904d1e70Sandi selinger dnz_row = onz_row = 0; 685904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 686904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 687e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 688e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 689ae8e66a0Sandi selinger /* If column is in the diagonal */ 6903a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 691904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 692904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 693904d1e70Sandi selinger dnz_row++; 694ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 695904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 696904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 697904d1e70Sandi selinger onz_row++; 6983a063d27Sandi selinger } 6993a063d27Sandi selinger } 700904d1e70Sandi selinger ailen[j] = dnz_row; 701904d1e70Sandi selinger bilen[j] = onz_row; 7023a063d27Sandi selinger } 7033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7043a063d27Sandi selinger } 7053a063d27Sandi selinger 706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 707d71ae5a4SJacob Faibussowitsch { 708b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 709d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 710d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 711b49de8d1SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 713b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 717b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 718b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 721b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 722b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7239566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 724fa852ad4SSatish Balay } else { 72548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 727eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 728fa46199cSSatish Balay col--; 729b1fc9764SSatish Balay #else 730905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 731b1fc9764SSatish Balay #endif 732e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 734b49de8d1SLois Curfman McInnes } 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 7373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 738b49de8d1SLois Curfman McInnes } 739bc5ccf88SSatish Balay 740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 741d71ae5a4SJacob Faibussowitsch { 742bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 743b1d57f15SBarry Smith PetscInt nstash, reallocs; 744bc5ccf88SSatish Balay 745bc5ccf88SSatish Balay PetscFunctionBegin; 7463ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 747bc5ccf88SSatish Balay 7489566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7499566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7509566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 752bc5ccf88SSatish Balay } 753bc5ccf88SSatish Balay 754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 755d71ae5a4SJacob Faibussowitsch { 756bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 757b1d57f15SBarry Smith PetscMPIInt n; 758b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 759e44c0bd4SBarry Smith PetscInt *row, *col; 760ace3abfcSBarry Smith PetscBool other_disassembled; 76187828ca2SBarry Smith PetscScalar *val; 762bc5ccf88SSatish Balay 76391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7646e111a19SKarl Rupp 765bc5ccf88SSatish Balay PetscFunctionBegin; 7664cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 767a2d1c673SSatish Balay while (1) { 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 769a2d1c673SSatish Balay if (!flg) break; 770a2d1c673SSatish Balay 771bc5ccf88SSatish Balay for (i = 0; i < n;) { 772bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7732205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7742205254eSKarl Rupp if (row[j] != rstart) break; 7752205254eSKarl Rupp } 776bc5ccf88SSatish Balay if (j < n) ncols = j - i; 777bc5ccf88SSatish Balay else ncols = n - i; 778bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 780bc5ccf88SSatish Balay i = j; 781bc5ccf88SSatish Balay } 782bc5ccf88SSatish Balay } 7839566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 784bc5ccf88SSatish Balay } 7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 786c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7879ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7889ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7919ecce9b1SRichard Tran Mills } 792e2cf4d64SStefano Zampini #endif 7939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 795bc5ccf88SSatish Balay 796bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 797071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 798bc5ccf88SSatish Balay /* 799bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 800bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 801bc5ccf88SSatish Balay */ 802bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8035f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8059566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 806ad59fb31SSatish Balay } 807ad59fb31SSatish Balay } 80848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8099566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 811c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 815bc5ccf88SSatish Balay 8169566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8172205254eSKarl Rupp 818f4259b30SLisandro Dalcin aij->rowvalues = NULL; 819a30b2313SHong Zhang 8209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 821e56f5c9eSBarry Smith 8224f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 823f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 824e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 826e56f5c9eSBarry Smith } 8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 828c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 829e2cf4d64SStefano Zampini #endif 8303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 831bc5ccf88SSatish Balay } 832bc5ccf88SSatish Balay 833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 834d71ae5a4SJacob Faibussowitsch { 83544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8363a40ed3dSBarry Smith 8373a40ed3dSBarry Smith PetscFunctionBegin; 8389566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8411eb62cbbSBarry Smith } 8421eb62cbbSBarry Smith 843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 844d71ae5a4SJacob Faibussowitsch { 8451b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8461b1dd7adSMatthew G. Knepley PetscInt *lrows; 8476e520ac8SStefano Zampini PetscInt r, len; 8489939a2d1SBarry Smith PetscBool cong; 8491eb62cbbSBarry Smith 8503a40ed3dSBarry Smith PetscFunctionBegin; 8516e520ac8SStefano Zampini /* get locally owned rows */ 8529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8539566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 854dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85597b48c8fSBarry Smith if (x && b) { 8561b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8571b1dd7adSMatthew G. Knepley PetscScalar *bb; 8581b1dd7adSMatthew G. Knepley 85928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8619566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8621b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86597b48c8fSBarry Smith } 866a92ad425SStefano Zampini 867a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8689566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8699566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 870a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 871a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 872a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 873a92ad425SStefano Zampini PetscInt nnwA, nnwB; 874a92ad425SStefano Zampini PetscBool nnzA, nnzB; 875a92ad425SStefano Zampini 876a92ad425SStefano Zampini nnwA = aijA->nonew; 877a92ad425SStefano Zampini nnwB = aijB->nonew; 878a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 879a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 880a92ad425SStefano Zampini if (!nnzA) { 8819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 882a92ad425SStefano Zampini aijA->nonew = 0; 883a92ad425SStefano Zampini } 884a92ad425SStefano Zampini if (!nnzB) { 8859566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 886a92ad425SStefano Zampini aijB->nonew = 0; 887a92ad425SStefano Zampini } 888a92ad425SStefano Zampini /* Must zero here before the next loop */ 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8909566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8911b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8921b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 893a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8949566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 895e2d53e46SBarry Smith } 896a92ad425SStefano Zampini aijA->nonew = nnwA; 897a92ad425SStefano Zampini aijB->nonew = nnwB; 8986eb55b6aSBarry Smith } else { 8999566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9009566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9016eb55b6aSBarry Smith } 9029566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9054f9cfa9eSBarry Smith 9069939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 907f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9089939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 9099939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9109939a2d1SBarry Smith } 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9121eb62cbbSBarry Smith } 9131eb62cbbSBarry Smith 914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 915d71ae5a4SJacob Faibussowitsch { 9169c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9175ba17502SJed Brown PetscMPIInt n = A->rmap->n; 918131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 920131c27b5Sprj- PetscMPIInt p = 0; 92154bd4135SMatthew G. Knepley PetscSFNode *rrows; 92254bd4135SMatthew G. Knepley PetscSF sf; 9239c7c4993SBarry Smith const PetscScalar *xx; 924fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 925564f14d6SBarry Smith Vec xmask, lmask; 926564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 927564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 928564f14d6SBarry Smith PetscScalar *aa; 9299c7c4993SBarry Smith 9309c7c4993SBarry Smith PetscFunctionBegin; 93154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 937aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9385ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9399566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9405ba17502SJed Brown } 94154bd4135SMatthew G. Knepley rrows[r].rank = p; 94254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9439c7c4993SBarry Smith } 9449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9479566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9489566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9519371c9d4SSatish Balay for (r = 0; r < n; ++r) 9529371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 953564f14d6SBarry Smith /* zero diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9554cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9569566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9589566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 964a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 965a92ad425SStefano Zampini PetscBool cong; 966a92ad425SStefano Zampini 9679566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 973377aa5a1SBarry Smith } 9749566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9754cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 977564f14d6SBarry Smith ii = aij->i; 9788e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 979564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 980564f14d6SBarry Smith if (aij->compressedrow.use) { 981564f14d6SBarry Smith m = aij->compressedrow.nrows; 982564f14d6SBarry Smith ii = aij->compressedrow.i; 983564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 984564f14d6SBarry Smith for (i = 0; i < m; i++) { 985564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 986564f14d6SBarry Smith aj = aij->j + ii[i]; 987fff043a9SJunchao Zhang aa = aij_a + ii[i]; 988564f14d6SBarry Smith 989564f14d6SBarry Smith for (j = 0; j < n; j++) { 99025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 991377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 992564f14d6SBarry Smith *aa = 0.0; 993564f14d6SBarry Smith } 994564f14d6SBarry Smith aa++; 995564f14d6SBarry Smith aj++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith ridx++; 998564f14d6SBarry Smith } 999564f14d6SBarry Smith } else { /* do not use compressed row format */ 1000564f14d6SBarry Smith m = l->B->rmap->n; 1001564f14d6SBarry Smith for (i = 0; i < m; i++) { 1002564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1003564f14d6SBarry Smith aj = aij->j + ii[i]; 1004fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1005564f14d6SBarry Smith for (j = 0; j < n; j++) { 100625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1007377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1008564f14d6SBarry Smith *aa = 0.0; 1009564f14d6SBarry Smith } 1010564f14d6SBarry Smith aa++; 1011564f14d6SBarry Smith aj++; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith } 1015a92ad425SStefano Zampini if (x && b) { 10169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1018377aa5a1SBarry Smith } 10199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10234f9cfa9eSBarry Smith 10244f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1025f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10264f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10271c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10284f9cfa9eSBarry Smith } 10293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10309c7c4993SBarry Smith } 10319c7c4993SBarry Smith 1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1033d71ae5a4SJacob Faibussowitsch { 1034416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1035b1d57f15SBarry Smith PetscInt nt; 103619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1037416022c9SBarry Smith 10383a40ed3dSBarry Smith PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1044296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10461eb62cbbSBarry Smith } 10471eb62cbbSBarry Smith 1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1049d71ae5a4SJacob Faibussowitsch { 1050bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1051bd0c2dcbSBarry Smith 1052bd0c2dcbSBarry Smith PetscFunctionBegin; 10539566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1055bd0c2dcbSBarry Smith } 1056bd0c2dcbSBarry Smith 1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1058d71ae5a4SJacob Faibussowitsch { 1059416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10613a40ed3dSBarry Smith 10623a40ed3dSBarry Smith PetscFunctionBegin; 10639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10669566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1068da3a660dSBarry Smith } 1069da3a660dSBarry Smith 1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1071d71ae5a4SJacob Faibussowitsch { 1072416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1073da3a660dSBarry Smith 10743a40ed3dSBarry Smith PetscFunctionBegin; 1075da3a660dSBarry Smith /* do nondiagonal part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1077da3a660dSBarry Smith /* do local part */ 10789566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10799613dc34SJunchao Zhang /* add partial results together */ 10809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1083da3a660dSBarry Smith } 1084da3a660dSBarry Smith 1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1086d71ae5a4SJacob Faibussowitsch { 10874f423910Svictorle MPI_Comm comm; 1088ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1089ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1090cd0d46ebSvictorle IS Me, Notme; 1091b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109254d735aeSStefano Zampini PetscBool lf; 1093b1d57f15SBarry Smith PetscMPIInt size; 1094cd0d46ebSvictorle 1095cd0d46ebSvictorle PetscFunctionBegin; 109642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10979566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10993ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11023ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110342e5f5b4Svictorle 11047dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11059566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1108cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1109cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11119566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111366501d38Svictorle Aoff = Aoffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111566501d38Svictorle Boff = Boffs[0]; 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11179566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11189566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11219566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1123cd0d46ebSvictorle } 1124cd0d46ebSvictorle 1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1126d71ae5a4SJacob Faibussowitsch { 1127416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1128da3a660dSBarry Smith 11293a40ed3dSBarry Smith PetscFunctionBegin; 1130da3a660dSBarry Smith /* do nondiagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1132da3a660dSBarry Smith /* do local part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11349613dc34SJunchao Zhang /* add partial results together */ 11359566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11369566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1138da3a660dSBarry Smith } 1139da3a660dSBarry Smith 11401eb62cbbSBarry Smith /* 11411eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11421eb62cbbSBarry Smith diagonal block 11431eb62cbbSBarry Smith */ 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11473a40ed3dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 114908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1150aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11519566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11531eb62cbbSBarry Smith } 11541eb62cbbSBarry Smith 1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1156d71ae5a4SJacob Faibussowitsch { 1157052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11583a40ed3dSBarry Smith 11593a40ed3dSBarry Smith PetscFunctionBegin; 11609566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11619566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1163052efed2SBarry Smith } 1164052efed2SBarry Smith 1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1166d71ae5a4SJacob Faibussowitsch { 11678e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11688e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11698e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11703ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11712e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117317a3732bSBarry Smith PetscInt64 nz, hnz; 11743ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11753ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11763ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117717a3732bSBarry Smith PetscMPIInt rank; 11788e2fed03SBarry Smith 11798e2fed03SBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11813ea6fe3dSLisandro Dalcin 11823ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11833ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11843ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11853ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11863ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11878e2fed03SBarry Smith nz = A->nz + B->nz; 11883ea6fe3dSLisandro Dalcin 11893ea6fe3dSLisandro Dalcin /* write matrix header */ 11900700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11919371c9d4SSatish Balay header[1] = M; 11929371c9d4SSatish Balay header[2] = N; 119317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119538b83642SBarry Smith if (rank == 0) { 119638b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 119738b83642SBarry Smith else header[3] = (PetscInt)hnz; 119838b83642SBarry Smith } 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12008e2fed03SBarry Smith 12013ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12033ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12068e2fed03SBarry Smith 12073ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12093ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12103ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12113ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12123ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12138e2fed03SBarry Smith } 12149371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12159371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12168e2fed03SBarry Smith } 121717a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12199566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12208e2fed03SBarry Smith 12213ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12282e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12328e2fed03SBarry Smith } 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12379566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12388e2fed03SBarry Smith 12393ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12409566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12428e2fed03SBarry Smith } 12438e2fed03SBarry Smith 12449804daf3SBarry Smith #include <petscdraw.h> 1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1246d71ae5a4SJacob Faibussowitsch { 124744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124832dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1249ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1250b0a32e0cSBarry Smith PetscViewer sviewer; 1251f3ef73ceSBarry Smith PetscViewerFormat format; 1252416022c9SBarry Smith 12533a40ed3dSBarry Smith PetscFunctionBegin; 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125732077d6dSBarry Smith if (iascii) { 12589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1259ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1260f4f49eeaSPierre Jolivet PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1263ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1264ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1265ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1266ef5fdb51SBarry Smith navg += nz[i]; 1267ef5fdb51SBarry Smith } 12689566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1269ef5fdb51SBarry Smith navg = navg / size; 12709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1272ef5fdb51SBarry Smith } 12739566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1274456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12754e220ebcSLois Curfman McInnes MatInfo info; 12766335e310SSatish Balay PetscInt *inodes = NULL; 1277923f20ffSKris Buschelman 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12809566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1282923f20ffSKris Buschelman if (!inodes) { 12839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12849371c9d4SSatish Balay (double)info.memory)); 12856831982aSBarry Smith } else { 12869371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12879371c9d4SSatish Balay (double)info.memory)); 12886831982aSBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12969566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1298fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1299923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13009566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1301923f20ffSKris Buschelman if (inodes) { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1303d38fa0fbSBarry Smith } else { 13049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1305d38fa0fbSBarry Smith } 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13074aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130908480c60SBarry Smith } 13108e2fed03SBarry Smith } else if (isbinary) { 13118e2fed03SBarry Smith if (size == 1) { 13129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13139566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13148e2fed03SBarry Smith } else { 13159566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13168e2fed03SBarry Smith } 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131871e56450SStefano Zampini } else if (iascii && size == 1) { 13199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13209566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13220f5bd95cSBarry Smith } else if (isdraw) { 1323b0a32e0cSBarry Smith PetscDraw draw; 1324ace3abfcSBarry Smith PetscBool isnull; 13259566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13269566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13273ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132819bcc07fSBarry Smith } 132919bcc07fSBarry Smith 133071e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 133171e56450SStefano Zampini Mat A = NULL, Av; 133271e56450SStefano Zampini IS isrow, iscol; 13332ee70a88SLois Curfman McInnes 13349566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13359566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13379566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133871e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133971e56450SStefano Zampini /* 134071e56450SStefano Zampini Mat *AA, A = NULL, Av; 134171e56450SStefano Zampini IS isrow,iscol; 134271e56450SStefano Zampini 13439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1346dd400576SPatrick Sanan if (rank == 0) { 13479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134871e56450SStefano Zampini A = AA[0]; 134971e56450SStefano Zampini Av = AA[0]; 135095373324SBarry Smith } 13519566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135271e56450SStefano Zampini */ 13539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135555843e3eSBarry Smith /* 135655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1357b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135855843e3eSBarry Smith */ 13599566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1360dd400576SPatrick Sanan if (rank == 0) { 136148a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13629566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136395373324SBarry Smith } 13649566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136695373324SBarry Smith } 13673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13681eb62cbbSBarry Smith } 13691eb62cbbSBarry Smith 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1371d71ae5a4SJacob Faibussowitsch { 1372ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1373416022c9SBarry Smith 13743a40ed3dSBarry Smith PetscFunctionBegin; 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137948a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1381416022c9SBarry Smith } 1382416022c9SBarry Smith 1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1384d71ae5a4SJacob Faibussowitsch { 138544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1386f4259b30SLisandro Dalcin Vec bb1 = NULL; 1387ace3abfcSBarry Smith PetscBool hasop; 13888a729477SBarry Smith 13893a40ed3dSBarry Smith PetscFunctionBegin; 1390a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393a2b30743SBarry Smith } 1394a2b30743SBarry Smith 139548a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13964e980039SJed Brown 1397c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1398da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14002798e883SHong Zhang its--; 1401da3a660dSBarry Smith } 14022798e883SHong Zhang 14032798e883SHong Zhang while (its--) { 14049566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14062798e883SHong Zhang 1407c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14089566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14099566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14102798e883SHong Zhang 1411c14dc6b6SHong Zhang /* local sweep */ 14129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14132798e883SHong Zhang } 14143a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1426c14dc6b6SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14422798e883SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 1446a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1447a7420bb7SBarry Smith Vec xx1; 1448a7420bb7SBarry Smith 14499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1451a7420bb7SBarry Smith 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1454a7420bb7SBarry Smith if (!mat->diag) { 14559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14569566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1457a7420bb7SBarry Smith } 14589566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1459bd0c2dcbSBarry Smith if (hasop) { 14609566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1461bd0c2dcbSBarry Smith } else { 14629566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1463bd0c2dcbSBarry Smith } 14649566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1465887ee2caSBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1467a7420bb7SBarry Smith 1468a7420bb7SBarry Smith /* local sweep */ 14699566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14709566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1472ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1473c14dc6b6SHong Zhang 14749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1475a0808db4SHong Zhang 14767b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14788a729477SBarry Smith } 1479a66be287SLois Curfman McInnes 1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1481d71ae5a4SJacob Faibussowitsch { 148272e6a0cfSJed Brown Mat aA, aB, Aperm; 148372e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148472e6a0cfSJed Brown PetscScalar *aa, *ba; 148572e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148672e6a0cfSJed Brown PetscSF rowsf, sf; 14870298fd71SBarry Smith IS parcolp = NULL; 148872e6a0cfSJed Brown PetscBool done; 148942e855d1Svictor 149042e855d1Svictor PetscFunctionBegin; 14919566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149572e6a0cfSJed Brown 149672e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14999566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 150072e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15029566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150372e6a0cfSJed Brown 150472e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150872e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15119566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151272e6a0cfSJed Brown 15139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151672e6a0cfSJed Brown 151772e6a0cfSJed Brown /* Find out where my gcols should go */ 15189566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15259566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152672e6a0cfSJed Brown 15279566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15289566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15299566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 153072e6a0cfSJed Brown for (i = 0; i < m; i++) { 1531131c27b5Sprj- PetscInt row = rdest[i]; 1532131c27b5Sprj- PetscMPIInt rowner; 15339566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153472e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1535131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1536131c27b5Sprj- PetscMPIInt cowner; 15379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153872e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153972e6a0cfSJed Brown else onnz[i]++; 154072e6a0cfSJed Brown } 154172e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1542131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1543131c27b5Sprj- PetscMPIInt cowner; 15449566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154672e6a0cfSJed Brown else onnz[i]++; 154772e6a0cfSJed Brown } 154872e6a0cfSJed Brown } 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155472e6a0cfSJed Brown 15559566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155872e6a0cfSJed Brown for (i = 0; i < m; i++) { 155972e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1560970468b0SJed Brown PetscInt j0, rowlen; 156172e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1562970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1563970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15649566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1565970468b0SJed Brown } 156672e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1567970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1568970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15699566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1570970468b0SJed Brown } 157172e6a0cfSJed Brown } 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15749566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15759566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15799566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15809566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15819566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158272e6a0cfSJed Brown *B = Aperm; 15833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158442e855d1Svictor } 158542e855d1Svictor 1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1587d71ae5a4SJacob Faibussowitsch { 1588c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1589c5e4d11fSDmitry Karpeev 1590c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15919566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1592c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1594c5e4d11fSDmitry Karpeev } 1595c5e4d11fSDmitry Karpeev 1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1597d71ae5a4SJacob Faibussowitsch { 1598a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1599a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16003966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1601a66be287SLois Curfman McInnes 16023a40ed3dSBarry Smith PetscFunctionBegin; 16034e220ebcSLois Curfman McInnes info->block_size = 1.0; 16049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16052205254eSKarl Rupp 16069371c9d4SSatish Balay isend[0] = info->nz_used; 16079371c9d4SSatish Balay isend[1] = info->nz_allocated; 16089371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16099371c9d4SSatish Balay isend[3] = info->memory; 16109371c9d4SSatish Balay isend[4] = info->mallocs; 16112205254eSKarl Rupp 16129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16132205254eSKarl Rupp 16149371c9d4SSatish Balay isend[0] += info->nz_used; 16159371c9d4SSatish Balay isend[1] += info->nz_allocated; 16169371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16179371c9d4SSatish Balay isend[3] += info->memory; 16189371c9d4SSatish Balay isend[4] += info->mallocs; 1619a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16204e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16214e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16224e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16234e220ebcSLois Curfman McInnes info->memory = isend[3]; 16244e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1625a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16272205254eSKarl Rupp 16284e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16294e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16304e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16314e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16324e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1633a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16341c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16352205254eSKarl Rupp 16364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1641a66be287SLois Curfman McInnes } 16424e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16434e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16444e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1646a66be287SLois Curfman McInnes } 1647a66be287SLois Curfman McInnes 1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1649d71ae5a4SJacob Faibussowitsch { 1650c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1651c74985f6SBarry Smith 16523a40ed3dSBarry Smith PetscFunctionBegin; 165312c028f9SKris Buschelman switch (op) { 1654512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1657a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16590ad02fcaSStefano Zampini case MAT_USE_INODES: 166012c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16611a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1662fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16639566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166512c028f9SKris Buschelman break; 166612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166743674050SBarry Smith MatCheckPreallocated(A, 1); 16684e0d8c25SBarry Smith a->roworiented = flg; 16692205254eSKarl Rupp 16709566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167212c028f9SKris Buschelman break; 16738c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1674d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1675d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1676d71ae5a4SJacob Faibussowitsch break; 1677d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1678d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1679d71ae5a4SJacob Faibussowitsch break; 1680c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1681ffa07934SHong Zhang case MAT_SPD: 168277e54ba9SKris Buschelman case MAT_SYMMETRIC: 168377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1684bf108f30SBarry Smith case MAT_HERMITIAN: 1685bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1686b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1687b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1688b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 168977e54ba9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1691d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1694957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1695957cac9fSHong Zhang break; 1696d71ae5a4SJacob Faibussowitsch default: 1697d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16983a40ed3dSBarry Smith } 16993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1700c74985f6SBarry Smith } 1701c74985f6SBarry Smith 1702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1703d71ae5a4SJacob Faibussowitsch { 1704154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170587828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1706d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1707d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1708b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 170939e00950SLois Curfman McInnes 17103a40ed3dSBarry Smith PetscFunctionBegin; 171128b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17127a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17137a0afa10SBarry Smith 171470f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17157a0afa10SBarry Smith /* 17167a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17177a0afa10SBarry Smith */ 17187a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1719b1d57f15SBarry Smith PetscInt max = 1, tmp; 1720d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17217a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17222205254eSKarl Rupp if (max < tmp) max = tmp; 17237a0afa10SBarry Smith } 17249566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17257a0afa10SBarry Smith } 17267a0afa10SBarry Smith 1727aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1728abc0e9e4SLois Curfman McInnes lrow = row - rstart; 172939e00950SLois Curfman McInnes 17309371c9d4SSatish Balay pvA = &vworkA; 17319371c9d4SSatish Balay pcA = &cworkA; 17329371c9d4SSatish Balay pvB = &vworkB; 17339371c9d4SSatish Balay pcB = &cworkB; 17349371c9d4SSatish Balay if (!v) { 17359371c9d4SSatish Balay pvA = NULL; 17369371c9d4SSatish Balay pvB = NULL; 17379371c9d4SSatish Balay } 17389371c9d4SSatish Balay if (!idx) { 17399371c9d4SSatish Balay pcA = NULL; 17409371c9d4SSatish Balay if (!v) pcB = NULL; 17419371c9d4SSatish Balay } 17429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17439566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1744154123eaSLois Curfman McInnes nztot = nzA + nzB; 1745154123eaSLois Curfman McInnes 174670f0671dSBarry Smith cmap = mat->garray; 1747154123eaSLois Curfman McInnes if (v || idx) { 1748154123eaSLois Curfman McInnes if (nztot) { 1749154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1750b1d57f15SBarry Smith PetscInt imark = -1; 1751154123eaSLois Curfman McInnes if (v) { 175270f0671dSBarry Smith *v = v_p = mat->rowvalues; 175339e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1755154123eaSLois Curfman McInnes else break; 1756154123eaSLois Curfman McInnes } 1757154123eaSLois Curfman McInnes imark = i; 175870f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 175970f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1760154123eaSLois Curfman McInnes } 1761154123eaSLois Curfman McInnes if (idx) { 176270f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176370f0671dSBarry Smith if (imark > -1) { 1764ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176570f0671dSBarry Smith } else { 1766154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176770f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1768154123eaSLois Curfman McInnes else break; 1769154123eaSLois Curfman McInnes } 1770154123eaSLois Curfman McInnes imark = i; 177170f0671dSBarry Smith } 177270f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177370f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177439e00950SLois Curfman McInnes } 17753f97c4b0SBarry Smith } else { 1776f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1777f4259b30SLisandro Dalcin if (v) *v = NULL; 17781ca473b0SSatish Balay } 1779154123eaSLois Curfman McInnes } 178039e00950SLois Curfman McInnes *nz = nztot; 17819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17829566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178439e00950SLois Curfman McInnes } 178539e00950SLois Curfman McInnes 1786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1787d71ae5a4SJacob Faibussowitsch { 17887a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17893a40ed3dSBarry Smith 17903a40ed3dSBarry Smith PetscFunctionBegin; 179128b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17927a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179439e00950SLois Curfman McInnes } 179539e00950SLois Curfman McInnes 1796ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1797d71ae5a4SJacob Faibussowitsch { 1798855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1799ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1800d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1801329f5518SBarry Smith PetscReal sum = 0.0; 1802fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 180304ca555eSLois Curfman McInnes 18043a40ed3dSBarry Smith PetscFunctionBegin; 180517699dbbSLois Curfman McInnes if (aij->size == 1) { 18069566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180737fa93a5SLois Curfman McInnes } else { 18089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 181004ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1811fff043a9SJunchao Zhang v = amata; 181204ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18139371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18149371c9d4SSatish Balay v++; 181504ca555eSLois Curfman McInnes } 1816fff043a9SJunchao Zhang v = bmata; 181704ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18189371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18199371c9d4SSatish Balay v++; 182004ca555eSLois Curfman McInnes } 18211c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18228f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18239566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18243a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1825329f5518SBarry Smith PetscReal *tmp, *tmp2; 1826b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 182904ca555eSLois Curfman McInnes *norm = 0.0; 18309371c9d4SSatish Balay v = amata; 18319371c9d4SSatish Balay jj = amat->j; 183204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18339371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18349371c9d4SSatish Balay v++; 183504ca555eSLois Curfman McInnes } 18369371c9d4SSatish Balay v = bmata; 18379371c9d4SSatish Balay jj = bmat->j; 183804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18399371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18409371c9d4SSatish Balay v++; 184104ca555eSLois Curfman McInnes } 18421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1843d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184404ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184504ca555eSLois Curfman McInnes } 18469566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18479566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18489566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18493a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1850329f5518SBarry Smith PetscReal ntemp = 0.0; 1851d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18528e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185304ca555eSLois Curfman McInnes sum = 0.0; 185404ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18559371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18569371c9d4SSatish Balay v++; 185704ca555eSLois Curfman McInnes } 18588e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 185904ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18609371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18619371c9d4SSatish Balay v++; 186204ca555eSLois Curfman McInnes } 1863515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186404ca555eSLois Curfman McInnes } 18651c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18669566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1867ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187037fa93a5SLois Curfman McInnes } 18713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1872855ac2c5SLois Curfman McInnes } 1873855ac2c5SLois Curfman McInnes 1874ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1875d71ae5a4SJacob Faibussowitsch { 1876a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1877a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1878071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1879071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1880a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1881ce496241SStefano Zampini const MatScalar *pbv, *bv; 1882b7c46309SBarry Smith 18833a40ed3dSBarry Smith PetscFunctionBegin; 18847fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18859371c9d4SSatish Balay ma = A->rmap->n; 18869371c9d4SSatish Balay na = A->cmap->n; 18879371c9d4SSatish Balay mb = a->B->rmap->n; 18889371c9d4SSatish Balay nb = a->B->cmap->n; 18899371c9d4SSatish Balay ai = Aloc->i; 18909371c9d4SSatish Balay aj = Aloc->j; 18919371c9d4SSatish Balay bi = Bloc->i; 18929371c9d4SSatish Balay bj = Bloc->j; 1893fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189480bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189580bcc5a1SJed Brown PetscSFNode *oloc; 1896713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 189780bcc5a1SJed Brown 18989566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 189980bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19009566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1901cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190280bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19039566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190480bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190580bcc5a1SJed Brown /* map those to global */ 19069566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19079566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19089566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191057168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191157168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19129566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1913d4bb536fSBarry Smith 19149566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19179566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19199566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1920fc4dec0aSBarry Smith } else { 1921fc4dec0aSBarry Smith B = *matout; 19229566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1923fc4dec0aSBarry Smith } 1924b7c46309SBarry Smith 1925f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1926a8661f62Sandi selinger A_diag = a->A; 1927a8661f62Sandi selinger B_diag = &b->A; 1928a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1929a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1930a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1931a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1932f79cb1a0Sandi selinger 1933f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1934ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1935f79cb1a0Sandi selinger 19364cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1937a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19387fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19399566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1940f79cb1a0Sandi selinger 1941b7c46309SBarry Smith /* copy over the B part */ 19429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1944ce496241SStefano Zampini pbv = bv; 1945d0f46423SBarry Smith row = A->rmap->rstart; 19462205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 194761a2fbbaSHong Zhang cols_tmp = cols; 1948da668accSHong Zhang for (i = 0; i < mb; i++) { 1949da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19509566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19512205254eSKarl Rupp row++; 1952720a2405SPierre Jolivet if (pbv) pbv += ncol; 1953720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1954b7c46309SBarry Smith } 19559566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1957fc73b1b3SBarry Smith 19589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1960cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19610de55854SLois Curfman McInnes *matout = B; 19620de55854SLois Curfman McInnes } else { 19639566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19640de55854SLois Curfman McInnes } 19653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1966b7c46309SBarry Smith } 1967b7c46309SBarry Smith 1968ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1969d71ae5a4SJacob Faibussowitsch { 19704b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19714b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1972b1d57f15SBarry Smith PetscInt s1, s2, s3; 1973a008b906SSatish Balay 19743a40ed3dSBarry Smith PetscFunctionBegin; 19759566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19764b967eb1SSatish Balay if (rr) { 19779566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 197808401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19794b967eb1SSatish Balay /* Overlap communication with computation. */ 19809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1981a008b906SSatish Balay } 19824b967eb1SSatish Balay if (ll) { 19839566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198408401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1985dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19864b967eb1SSatish Balay } 19874b967eb1SSatish Balay /* scale the diagonal block */ 1988dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19894b967eb1SSatish Balay 19904b967eb1SSatish Balay if (rr) { 19914b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19929566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1993dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19944b967eb1SSatish Balay } 19953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1996a008b906SSatish Balay } 1997a008b906SSatish Balay 1998ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 1999d71ae5a4SJacob Faibussowitsch { 2000bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20013a40ed3dSBarry Smith 20023a40ed3dSBarry Smith PetscFunctionBegin; 20039566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005bb5a7306SBarry Smith } 2006bb5a7306SBarry Smith 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2008d71ae5a4SJacob Faibussowitsch { 2009d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2010d4bb536fSBarry Smith Mat a, b, c, d; 2011ace3abfcSBarry Smith PetscBool flg; 2012d4bb536fSBarry Smith 20133a40ed3dSBarry Smith PetscFunctionBegin; 20149371c9d4SSatish Balay a = matA->A; 20159371c9d4SSatish Balay b = matA->B; 20169371c9d4SSatish Balay c = matB->A; 20179371c9d4SSatish Balay d = matB->B; 2018d4bb536fSBarry Smith 20199566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202048a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20211c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2023d4bb536fSBarry Smith } 2024d4bb536fSBarry Smith 2025ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2026d71ae5a4SJacob Faibussowitsch { 2027cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2028cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2029cb5b572fSBarry Smith 2030cb5b572fSBarry Smith PetscFunctionBegin; 203133f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203233f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2033cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2034cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2035cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2036cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2037cb5b572fSBarry Smith then copying the submatrices */ 20389566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2039cb5b572fSBarry Smith } else { 20409566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20419566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2042cb5b572fSBarry Smith } 20439566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2045cb5b572fSBarry Smith } 2046cb5b572fSBarry Smith 2047001ddc4fSHong Zhang /* 2048001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2049001ddc4fSHong Zhang have different nonzero structure. 2050001ddc4fSHong Zhang */ 2051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2052d71ae5a4SJacob Faibussowitsch { 2053001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205495b7e79eSJed Brown 205595b7e79eSJed Brown PetscFunctionBegin; 205695b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 205795b7e79eSJed Brown for (i = 0; i < m; i++) { 20588e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2059001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2060001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206195b7e79eSJed Brown nnz[i] = 0; 206295b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2063001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2064001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206595b7e79eSJed Brown nnz[i]++; 206695b7e79eSJed Brown } 206795b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 206895b7e79eSJed Brown } 20693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207095b7e79eSJed Brown } 207195b7e79eSJed Brown 2072001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2073d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2074d71ae5a4SJacob Faibussowitsch { 2075001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2076001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2077001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2078001ddc4fSHong Zhang 2079001ddc4fSHong Zhang PetscFunctionBegin; 20809566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2082001ddc4fSHong Zhang } 2083001ddc4fSHong Zhang 2084ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2085d71ae5a4SJacob Faibussowitsch { 2086ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2087ac90fabeSBarry Smith 2088ac90fabeSBarry Smith PetscFunctionBegin; 2089ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20909566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20919566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2092ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20939566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2094ac90fabeSBarry Smith } else { 20959f5f6813SShri Abhyankar Mat B; 20969f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2097d9d719b4SStefano Zampini 20989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 20999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21009566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21019566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21029566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21039566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21049566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21059566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21079566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21089566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21099566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21109566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2111ac90fabeSBarry Smith } 21123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2113ac90fabeSBarry Smith } 2114ac90fabeSBarry Smith 21152726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2116354c94deSBarry Smith 2117ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2118d71ae5a4SJacob Faibussowitsch { 21195f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21205f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2121354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2122354c94deSBarry Smith 21239566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21249566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21255f80ce2aSJacob Faibussowitsch } 21263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2127354c94deSBarry Smith } 2128354c94deSBarry Smith 2129ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2130d71ae5a4SJacob Faibussowitsch { 213199cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213299cafbc1SBarry Smith 213399cafbc1SBarry Smith PetscFunctionBegin; 21349566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21359566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213799cafbc1SBarry Smith } 213899cafbc1SBarry Smith 2139ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2140d71ae5a4SJacob Faibussowitsch { 214199cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214299cafbc1SBarry Smith 214399cafbc1SBarry Smith PetscFunctionBegin; 21449566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21459566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214799cafbc1SBarry Smith } 214899cafbc1SBarry Smith 2149ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2150d71ae5a4SJacob Faibussowitsch { 2151c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2152475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2153475b8b61SHong Zhang PetscScalar *va, *vv; 2154475b8b61SHong Zhang Vec vB, vA; 2155475b8b61SHong Zhang const PetscScalar *vb; 2156c91732d9SHong Zhang 2157c91732d9SHong Zhang PetscFunctionBegin; 21589566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 21599566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2160475b8b61SHong Zhang 21619566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2162c91732d9SHong Zhang if (idx) { 2163475b8b61SHong Zhang for (i = 0; i < m; i++) { 2164d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2165c91732d9SHong Zhang } 2166c91732d9SHong Zhang } 2167c91732d9SHong Zhang 21689566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 21699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21709566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2171c91732d9SHong Zhang 21729566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2174475b8b61SHong Zhang for (i = 0; i < m; i++) { 2175c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2176475b8b61SHong Zhang vv[i] = vb[i]; 2177c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2178475b8b61SHong Zhang } else { 2179475b8b61SHong Zhang vv[i] = va[i]; 21809371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2181c91732d9SHong Zhang } 2182c91732d9SHong Zhang } 21839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21869566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang 2192eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2193eede4a3fSMark Adams { 2194eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2195eede4a3fSMark Adams PetscInt m = A->rmap->n; 2196eede4a3fSMark Adams Vec vB, vA; 2197eede4a3fSMark Adams 2198eede4a3fSMark Adams PetscFunctionBegin; 2199eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 2200eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2201eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 2202eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2203eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2204eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2205eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2206eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2207eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2208eede4a3fSMark Adams } 2209eede4a3fSMark Adams 2210ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2211d71ae5a4SJacob Faibussowitsch { 2212f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2213f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2214f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2215f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2216f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2217f07e67edSHong Zhang Vec diagV, offdiagV; 2218ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2219ce496241SStefano Zampini const PetscScalar *ba, *bav; 2220f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2221f07e67edSHong Zhang Mat B = mat->B; 2222f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2223c87e5d42SMatthew Knepley 2224c87e5d42SMatthew Knepley PetscFunctionBegin; 2225f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2226f07e67edSHong Zhang if (A->cmap->N == n) { 22279566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22289566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22299566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22309566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2233f07e67edSHong Zhang } else if (n == 0) { 2234f07e67edSHong Zhang if (m) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22369371c9d4SSatish Balay for (r = 0; r < m; r++) { 22379371c9d4SSatish Balay a[r] = 0.0; 22389371c9d4SSatish Balay if (idx) idx[r] = -1; 22399371c9d4SSatish Balay } 22409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2241f07e67edSHong Zhang } 22423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2243f07e67edSHong Zhang } 2244f07e67edSHong Zhang 22459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22469566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22479566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22489566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2249f07e67edSHong Zhang 2250f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2252ce496241SStefano Zampini ba = bav; 2253f07e67edSHong Zhang bi = b->i; 2254f07e67edSHong Zhang bj = b->j; 22559566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2256f07e67edSHong Zhang for (r = 0; r < m; r++) { 2257f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2258f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22599371c9d4SSatish Balay offdiagA[r] = *ba; 22609371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2261f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2262f07e67edSHong Zhang offdiagA[r] = 0.0; 2263f07e67edSHong Zhang 2264f07e67edSHong Zhang /* Find first hole in the cmap */ 2265f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2266f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2267f07e67edSHong Zhang if (col > j && j < cstart) { 2268f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2269f07e67edSHong Zhang break; 2270f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2271f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2272f07e67edSHong Zhang break; 2273f07e67edSHong Zhang } 2274f07e67edSHong Zhang } 22754e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2276f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2277f07e67edSHong Zhang if (ncols == 0) { 2278f07e67edSHong Zhang if (cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = 0; 2280f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2281f07e67edSHong Zhang } else { /* ncols > 0 */ 2282f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2283f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2284f07e67edSHong Zhang } 2285f07e67edSHong Zhang } 2286f07e67edSHong Zhang } 2287f07e67edSHong Zhang 2288f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22899371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22909371c9d4SSatish Balay offdiagA[r] = *ba; 22919371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22929371c9d4SSatish Balay } 22939371c9d4SSatish Balay ba++; 22949371c9d4SSatish Balay bj++; 2295f07e67edSHong Zhang } 2296f07e67edSHong Zhang } 2297f07e67edSHong Zhang 22989566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22999566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2300f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2301f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2302f07e67edSHong Zhang a[r] = diagA[r]; 2303f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2304f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2305f07e67edSHong Zhang a[r] = diagA[r]; 2306c87e5d42SMatthew Knepley if (idx) { 2307f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2308f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2309f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2310f07e67edSHong Zhang } 2311f07e67edSHong Zhang } else { 2312f07e67edSHong Zhang a[r] = offdiagA[r]; 2313f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2314c87e5d42SMatthew Knepley } 2315c87e5d42SMatthew Knepley } 23169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23229566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2324c87e5d42SMatthew Knepley } 2325c87e5d42SMatthew Knepley 2326ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2327d71ae5a4SJacob Faibussowitsch { 232803bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2329fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2330fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233103bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233203bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233303bc72f1SMatthew Knepley Vec diagV, offdiagV; 2334ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2335ce496241SStefano Zampini const PetscScalar *ba, *bav; 2336fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2337fa213d2fSHong Zhang Mat B = mat->B; 2338fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 233903bc72f1SMatthew Knepley 234003bc72f1SMatthew Knepley PetscFunctionBegin; 2341fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2342fa213d2fSHong Zhang if (A->cmap->N == n) { 23439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23449566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23459566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2349fa213d2fSHong Zhang } else if (n == 0) { 2350fa213d2fSHong Zhang if (m) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23529371c9d4SSatish Balay for (r = 0; r < m; r++) { 23539371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23549371c9d4SSatish Balay if (idx) idx[r] = -1; 23559371c9d4SSatish Balay } 23569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2357fa213d2fSHong Zhang } 23583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2359fa213d2fSHong Zhang } 2360fa213d2fSHong Zhang 23619566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23629566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23639566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23649566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2365fa213d2fSHong Zhang 2366fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2368ce496241SStefano Zampini ba = bav; 2369fa213d2fSHong Zhang bi = b->i; 2370fa213d2fSHong Zhang bj = b->j; 23719566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2372fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2373fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2374fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23759371c9d4SSatish Balay offdiagA[r] = *ba; 23769371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2377fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2378fa213d2fSHong Zhang offdiagA[r] = 0.0; 2379fa213d2fSHong Zhang 2380fa213d2fSHong Zhang /* Find first hole in the cmap */ 2381fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2382fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2383fa213d2fSHong Zhang if (col > j && j < cstart) { 2384fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2385fa213d2fSHong Zhang break; 2386fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2387fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2388fa213d2fSHong Zhang break; 2389fa213d2fSHong Zhang } 2390fa213d2fSHong Zhang } 23914e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2392fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2393fa213d2fSHong Zhang if (ncols == 0) { 2394fa213d2fSHong Zhang if (cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = 0; 2396fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2397fa213d2fSHong Zhang } else { /* ncols > 0 */ 2398fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2399fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2400fa213d2fSHong Zhang } 2401fa213d2fSHong Zhang } 2402fa213d2fSHong Zhang } 2403fa213d2fSHong Zhang 2404fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24059371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24069371c9d4SSatish Balay offdiagA[r] = *ba; 24079371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24089371c9d4SSatish Balay } 24099371c9d4SSatish Balay ba++; 24109371c9d4SSatish Balay bj++; 2411fa213d2fSHong Zhang } 2412fa213d2fSHong Zhang } 2413fa213d2fSHong Zhang 24149566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2416fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2417fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 241803bc72f1SMatthew Knepley a[r] = diagA[r]; 2419fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2420fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2421fa213d2fSHong Zhang a[r] = diagA[r]; 2422fa213d2fSHong Zhang if (idx) { 2423fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242403bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2425fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2426fa213d2fSHong Zhang } 242703bc72f1SMatthew Knepley } else { 242803bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2429fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243003bc72f1SMatthew Knepley } 243103bc72f1SMatthew Knepley } 24329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24369566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24389566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244003bc72f1SMatthew Knepley } 244103bc72f1SMatthew Knepley 2442ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2443d71ae5a4SJacob Faibussowitsch { 2444c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24451a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24461a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2447c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2448c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2449c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2450ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2451ce496241SStefano Zampini const PetscScalar *ba, *bav; 24521a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24531a254869SHong Zhang Mat B = mat->B; 24541a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2455c87e5d42SMatthew Knepley 2456c87e5d42SMatthew Knepley PetscFunctionBegin; 24571a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24581a254869SHong Zhang if (A->cmap->N == n) { 24599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24609566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24619566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24629566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24651a254869SHong Zhang } else if (n == 0) { 24661a254869SHong Zhang if (m) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24689371c9d4SSatish Balay for (r = 0; r < m; r++) { 24699371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24709371c9d4SSatish Balay if (idx) idx[r] = -1; 24719371c9d4SSatish Balay } 24729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24731a254869SHong Zhang } 24743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24751a254869SHong Zhang } 24761a254869SHong Zhang 24779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24789566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24799566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24809566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24811a254869SHong Zhang 24821a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2484ce496241SStefano Zampini ba = bav; 24851a254869SHong Zhang bi = b->i; 24861a254869SHong Zhang bj = b->j; 24879566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24881a254869SHong Zhang for (r = 0; r < m; r++) { 24891a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24901a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24919371c9d4SSatish Balay offdiagA[r] = *ba; 24929371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24931a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24941a254869SHong Zhang offdiagA[r] = 0.0; 24951a254869SHong Zhang 24961a254869SHong Zhang /* Find first hole in the cmap */ 24971a254869SHong Zhang for (j = 0; j < ncols; j++) { 24981a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 24991a254869SHong Zhang if (col > j && j < cstart) { 25001a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25011a254869SHong Zhang break; 25021a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25031a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25041a254869SHong Zhang break; 25051a254869SHong Zhang } 25061a254869SHong Zhang } 25074e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25081a254869SHong Zhang /* a hole is outside compressed Bcols */ 25091a254869SHong Zhang if (ncols == 0) { 25101a254869SHong Zhang if (cstart) { 25111a254869SHong Zhang offdiagIdx[r] = 0; 25121a254869SHong Zhang } else offdiagIdx[r] = cend; 25131a254869SHong Zhang } else { /* ncols > 0 */ 25141a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25151a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25161a254869SHong Zhang } 25171a254869SHong Zhang } 25181a254869SHong Zhang } 25191a254869SHong Zhang 25201a254869SHong Zhang for (j = 0; j < ncols; j++) { 25219371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25229371c9d4SSatish Balay offdiagA[r] = *ba; 25239371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25249371c9d4SSatish Balay } 25259371c9d4SSatish Balay ba++; 25269371c9d4SSatish Balay bj++; 25271a254869SHong Zhang } 25281a254869SHong Zhang } 25291a254869SHong Zhang 25309566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25321a254869SHong Zhang for (r = 0; r < m; ++r) { 25331a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2534c87e5d42SMatthew Knepley a[r] = diagA[r]; 25351a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25361a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25371a254869SHong Zhang a[r] = diagA[r]; 25381a254869SHong Zhang if (idx) { 25391a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2540c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25411a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25421a254869SHong Zhang } 2543c87e5d42SMatthew Knepley } else { 2544c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25451a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2546c87e5d42SMatthew Knepley } 2547c87e5d42SMatthew Knepley } 25489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25549566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2556c87e5d42SMatthew Knepley } 2557c87e5d42SMatthew Knepley 2558d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2559d71ae5a4SJacob Faibussowitsch { 2560f6d58c54SBarry Smith Mat *dummy; 25615494a064SHong Zhang 25625494a064SHong Zhang PetscFunctionBegin; 25639566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2564f6d58c54SBarry Smith *newmat = *dummy; 25659566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25675494a064SHong Zhang } 25685494a064SHong Zhang 2569ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2570d71ae5a4SJacob Faibussowitsch { 2571bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2572bbead8a2SBarry Smith 2573bbead8a2SBarry Smith PetscFunctionBegin; 25749566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25757b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2577bbead8a2SBarry Smith } 2578bbead8a2SBarry Smith 2579d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2580d71ae5a4SJacob Faibussowitsch { 258173a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258273a71a0fSBarry Smith 258373a71a0fSBarry Smith PetscFunctionBegin; 258408401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25859566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2586679944adSJunchao Zhang if (x->assembled) { 25879566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2588679944adSJunchao Zhang } else { 25899566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2590679944adSJunchao Zhang } 25919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259473a71a0fSBarry Smith } 2595bbead8a2SBarry Smith 2596ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2597d71ae5a4SJacob Faibussowitsch { 2598b1b1104fSBarry Smith PetscFunctionBegin; 2599b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2600b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2602b1b1104fSBarry Smith } 2603b1b1104fSBarry Smith 2604b1b1104fSBarry Smith /*@ 2605f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2606f2afee66SBarry Smith 26072ef1f0ffSBarry Smith Not Collective 2608f2afee66SBarry Smith 2609f2afee66SBarry Smith Input Parameter: 2610f2afee66SBarry Smith . A - the matrix 2611f2afee66SBarry Smith 2612f2afee66SBarry Smith Output Parameter: 2613f2afee66SBarry Smith . nz - the number of nonzeros 2614f2afee66SBarry Smith 2615f2afee66SBarry Smith Level: advanced 2616f2afee66SBarry Smith 2617fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2618f2afee66SBarry Smith @*/ 2619d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2620d71ae5a4SJacob Faibussowitsch { 2621f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2622f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2623dfebb78cSStefano Zampini PetscBool isaij; 2624f2afee66SBarry Smith 2625f2afee66SBarry Smith PetscFunctionBegin; 2626dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2627dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2628f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2630f2afee66SBarry Smith } 2631f2afee66SBarry Smith 2632f2afee66SBarry Smith /*@ 2633b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2634b1b1104fSBarry Smith 2635c3339decSBarry Smith Collective 2636b1b1104fSBarry Smith 2637b1b1104fSBarry Smith Input Parameters: 2638b1b1104fSBarry Smith + A - the matrix 263911a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2640b1b1104fSBarry Smith 264196a0c994SBarry Smith Level: advanced 264296a0c994SBarry Smith 2643fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2644b1b1104fSBarry Smith @*/ 2645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2646d71ae5a4SJacob Faibussowitsch { 2647b1b1104fSBarry Smith PetscFunctionBegin; 2648cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2650b1b1104fSBarry Smith } 2651b1b1104fSBarry Smith 2652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2653d71ae5a4SJacob Faibussowitsch { 2654b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2655b1b1104fSBarry Smith 2656b1b1104fSBarry Smith PetscFunctionBegin; 2657d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2658b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26599566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26601baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2661d0609cedSBarry Smith PetscOptionsHeadEnd(); 26623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2663b1b1104fSBarry Smith } 2664b1b1104fSBarry Smith 2665ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2666d71ae5a4SJacob Faibussowitsch { 26677d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2668c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26697d68702bSBarry Smith 26707d68702bSBarry Smith PetscFunctionBegin; 2671c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26729566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26735519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2674b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2676b83222d8SBarry Smith aij->nonew = nonew; 26777d68702bSBarry Smith } 26789566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26807d68702bSBarry Smith } 26817d68702bSBarry Smith 2682ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2683d71ae5a4SJacob Faibussowitsch { 26843b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26853b49f96aSBarry Smith 26863b49f96aSBarry Smith PetscFunctionBegin; 268708401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26889566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26893b49f96aSBarry Smith if (d) { 26903b49f96aSBarry Smith PetscInt rstart; 26919566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26923b49f96aSBarry Smith *d += rstart; 26933b49f96aSBarry Smith } 26943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26953b49f96aSBarry Smith } 26963b49f96aSBarry Smith 2697ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2698d71ae5a4SJacob Faibussowitsch { 2699a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2700a8ee9fb5SBarry Smith 2701a8ee9fb5SBarry Smith PetscFunctionBegin; 27029566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2704a8ee9fb5SBarry Smith } 27053b49f96aSBarry Smith 270658c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2707dec0b466SHong Zhang { 2708dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2709dec0b466SHong Zhang 2710dec0b466SHong Zhang PetscFunctionBegin; 271158c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 271258c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2714dec0b466SHong Zhang } 2715dec0b466SHong Zhang 2716cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2717cda55fadSBarry Smith MatGetRow_MPIAIJ, 2718cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2719cda55fadSBarry Smith MatMult_MPIAIJ, 272097304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27217c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27227c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2723f4259b30SLisandro Dalcin NULL, 2724f4259b30SLisandro Dalcin NULL, 2725f4259b30SLisandro Dalcin NULL, 2726f4259b30SLisandro Dalcin /*10*/ NULL, 2727f4259b30SLisandro Dalcin NULL, 2728f4259b30SLisandro Dalcin NULL, 272941f059aeSBarry Smith MatSOR_MPIAIJ, 2730b7c46309SBarry Smith MatTranspose_MPIAIJ, 273197304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2732cda55fadSBarry Smith MatEqual_MPIAIJ, 2733cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2734cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2735cda55fadSBarry Smith MatNorm_MPIAIJ, 273697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2737cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2738cda55fadSBarry Smith MatSetOption_MPIAIJ, 2739cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2740d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2741f4259b30SLisandro Dalcin NULL, 2742f4259b30SLisandro Dalcin NULL, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 274526cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2746f4259b30SLisandro Dalcin NULL, 2747f4259b30SLisandro Dalcin NULL, 2748a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 2753f4259b30SLisandro Dalcin NULL, 2754f4259b30SLisandro Dalcin NULL, 2755d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27567dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2757cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2758cda55fadSBarry Smith MatGetValues_MPIAIJ, 2759cb5b572fSBarry Smith MatCopy_MPIAIJ, 2760d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2761cda55fadSBarry Smith MatScale_MPIAIJ, 27627d68702bSBarry Smith MatShift_MPIAIJ, 276399e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2764564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276573a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27668a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27678a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2768f4259b30SLisandro Dalcin NULL, 2769f4259b30SLisandro Dalcin NULL, 277093dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2771f4259b30SLisandro Dalcin NULL, 2772cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277372e6a0cfSJed Brown MatPermute_MPIAIJ, 2774f4259b30SLisandro Dalcin NULL, 27757dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2776e03a110bSBarry Smith MatDestroy_MPIAIJ, 2777e03a110bSBarry Smith MatView_MPIAIJ, 2778f4259b30SLisandro Dalcin NULL, 2779f4259b30SLisandro Dalcin NULL, 2780f4259b30SLisandro Dalcin /*64*/ NULL, 2781f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 2783f4259b30SLisandro Dalcin NULL, 2784f4259b30SLisandro Dalcin NULL, 2785d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2786c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin NULL, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 27913acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2792b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2793f4259b30SLisandro Dalcin NULL, 2794f4259b30SLisandro Dalcin NULL, 2795f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2796f4259b30SLisandro Dalcin /*80*/ NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27995bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28006cff0a6bSPierre Jolivet NULL, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f4259b30SLisandro Dalcin NULL, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin /*89*/ NULL, 2806f4259b30SLisandro Dalcin NULL, 280726be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2808f4259b30SLisandro Dalcin NULL, 2809f4259b30SLisandro Dalcin NULL, 2810cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin NULL, 2814b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28154222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 28182fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282199cafbc1SBarry Smith MatRealPart_MPIAIJ, 282269db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2823f4259b30SLisandro Dalcin NULL, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin /*109*/ NULL, 2826f4259b30SLisandro Dalcin NULL, 28275494a064SHong Zhang MatGetRowMin_MPIAIJ, 2828f4259b30SLisandro Dalcin NULL, 28293b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2830d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2833f4259b30SLisandro Dalcin NULL, 2834f4259b30SLisandro Dalcin NULL, 2835b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 2837f4259b30SLisandro Dalcin NULL, 2838f4259b30SLisandro Dalcin NULL, 2839b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2840f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2841a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2842bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2843a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28447dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2845f4259b30SLisandro Dalcin /*129*/ NULL, 2846f4259b30SLisandro Dalcin NULL, 2847f4259b30SLisandro Dalcin NULL, 2848187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin /*134*/ NULL, 2851f4259b30SLisandro Dalcin NULL, 2852f4259b30SLisandro Dalcin NULL, 2853f4259b30SLisandro Dalcin NULL, 2854f4259b30SLisandro Dalcin NULL, 285546533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2856f4259b30SLisandro Dalcin NULL, 2857f4259b30SLisandro Dalcin NULL, 28589c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2859a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28604222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2861f4259b30SLisandro Dalcin /*145*/ NULL, 2862f4259b30SLisandro Dalcin NULL, 286372833a62Smarkadams4 NULL, 286472833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28652d776b49SBarry Smith NULL, 2866dec0b466SHong Zhang /*150*/ NULL, 2867eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2868eede4a3fSMark Adams MatGetRowSumAbs_MPIAIJ}; 286936ce4990SBarry Smith 2870ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2871d71ae5a4SJacob Faibussowitsch { 28722e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28732e8a6d31SBarry Smith 28742e8a6d31SBarry Smith PetscFunctionBegin; 28759566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28769566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28782e8a6d31SBarry Smith } 28792e8a6d31SBarry Smith 2880ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2881d71ae5a4SJacob Faibussowitsch { 28822e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28832e8a6d31SBarry Smith 28842e8a6d31SBarry Smith PetscFunctionBegin; 28859566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28869566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28882e8a6d31SBarry Smith } 28898a729477SBarry Smith 2890d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2891d71ae5a4SJacob Faibussowitsch { 2892ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28935d2a9ed1SStefano Zampini PetscMPIInt size; 2894a23d5eceSKris Buschelman 2895a23d5eceSKris Buschelman PetscFunctionBegin; 2896ad79cf63SBarry Smith if (B->hash_active) { 2897aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2898ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2899ad79cf63SBarry Smith } 29009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2902899cda47SBarry Smith 2903cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2904eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2905cb7b82ddSBarry Smith #else 29069566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2907cb7b82ddSBarry Smith #endif 29089566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29109566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2911cb7b82ddSBarry Smith 29129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2913c508b908SBarry Smith 2914c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29169566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29189566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29199566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2920c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2921cb7b82ddSBarry Smith 2922c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2923ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29249566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29269566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29279566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2928c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2929899cda47SBarry Smith 29309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2932526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2933cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293415001458SStefano Zampini B->assembled = PETSC_FALSE; 29353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2936a23d5eceSKris Buschelman } 2937a23d5eceSKris Buschelman 2938ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2939d71ae5a4SJacob Faibussowitsch { 2940ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2941846b4da1SFande Kong 2942846b4da1SFande Kong PetscFunctionBegin; 2943846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2946846b4da1SFande Kong 2947846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2948eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2949846b4da1SFande Kong #else 29509566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2951846b4da1SFande Kong #endif 29529566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29549566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2955846b4da1SFande Kong 29569566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29579566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2958846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2959846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2960846b4da1SFande Kong B->assembled = PETSC_FALSE; 29613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2962846b4da1SFande Kong } 2963846b4da1SFande Kong 2964d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2965d71ae5a4SJacob Faibussowitsch { 2966d6dfbf8fSBarry Smith Mat mat; 2967416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2968d6dfbf8fSBarry Smith 29693a40ed3dSBarry Smith PetscFunctionBegin; 2970f4259b30SLisandro Dalcin *newmat = NULL; 29719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29739566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29749566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2975273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2976e1b6402fSHong Zhang 2977d5f3da31SBarry Smith mat->factortype = matin->factortype; 2978501880eeSStefano Zampini mat->assembled = matin->assembled; 2979e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2980d6dfbf8fSBarry Smith 298117699dbbSLois Curfman McInnes a->size = oldmat->size; 298217699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2983e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2984e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2985501880eeSStefano Zampini a->rowindices = NULL; 2986501880eeSStefano Zampini a->rowvalues = NULL; 2987bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2988d6dfbf8fSBarry Smith 29899566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29909566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2991420957c1SBarry Smith if (matin->hash_active) { 2992420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2993420957c1SBarry Smith } else { 2994420957c1SBarry Smith mat->preallocated = matin->preallocated; 29952ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2996aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2997eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2998b1fc9764SSatish Balay #else 29999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3001b1fc9764SSatish Balay #endif 3002501880eeSStefano Zampini } else a->colmap = NULL; 30033f41c07dSBarry Smith if (oldmat->garray) { 3004b1d57f15SBarry Smith PetscInt len; 3005d0f46423SBarry Smith len = oldmat->B->cmap->n; 30069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30079566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3008501880eeSStefano Zampini } else a->garray = NULL; 3009d6dfbf8fSBarry Smith 30100de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30110de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30120de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3013aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3014aa624791SPierre Jolivet if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 30159566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30169566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3017420957c1SBarry Smith } 30189566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30198a729477SBarry Smith *newmat = mat; 30203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30218a729477SBarry Smith } 3022416022c9SBarry Smith 3023d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3024d71ae5a4SJacob Faibussowitsch { 302552f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 302652f91c60SVaclav Hapla 302752f91c60SVaclav Hapla PetscFunctionBegin; 302852f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 302952f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3030c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30319566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303452f91c60SVaclav Hapla if (isbinary) { 30359566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 303652f91c60SVaclav Hapla } else if (ishdf5) { 303752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30389566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 303952f91c60SVaclav Hapla #else 304052f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304152f91c60SVaclav Hapla #endif 304252f91c60SVaclav Hapla } else { 304398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304452f91c60SVaclav Hapla } 30453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304652f91c60SVaclav Hapla } 304752f91c60SVaclav Hapla 3048d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3049d71ae5a4SJacob Faibussowitsch { 30503ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30513ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30523ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30538fb81238SShri Abhyankar 30548fb81238SShri Abhyankar PetscFunctionBegin; 30559566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30568fb81238SShri Abhyankar 30573ea6fe3dSLisandro Dalcin /* read in matrix header */ 30589566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 305908401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30609371c9d4SSatish Balay M = header[1]; 30619371c9d4SSatish Balay N = header[2]; 30629371c9d4SSatish Balay nz = header[3]; 306308401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306408401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 306508401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 306608ea439dSMark F. Adams 30673ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30689566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30693ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30703ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30713ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30748fb81238SShri Abhyankar 30753ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30769566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3077aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30788fb81238SShri Abhyankar 30793ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30839371c9d4SSatish Balay rowidxs[0] = 0; 30849371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 308538b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30861c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 308708401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 308838b83642SBarry Smith } 308938b83642SBarry Smith 30903ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30943ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30959566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30969566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30979566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30998fb81238SShri Abhyankar } 31008fb81238SShri Abhyankar 31013782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3102ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3103d71ae5a4SJacob Faibussowitsch { 31044aa3045dSJed Brown IS iscol_local; 3105c5e4d11fSDmitry Karpeev PetscBool isstride; 3106c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31073782ecc7SHong Zhang 31083782ecc7SHong Zhang PetscFunctionBegin; 31093782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31113782ecc7SHong Zhang 3112c5e4d11fSDmitry Karpeev if (isstride) { 3113c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31149566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31159566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3117c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3118c5e4d11fSDmitry Karpeev } 31193782ecc7SHong Zhang 31201c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3121c5e4d11fSDmitry Karpeev if (gisstride) { 3122c5e4d11fSDmitry Karpeev PetscInt N; 31239566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31249566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31259566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31269566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3127c5e4d11fSDmitry Karpeev } else { 3128c5bfad50SMark F. Adams PetscInt cbs; 31299566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31309566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3132b79d0421SJed Brown } 31333782ecc7SHong Zhang 31343782ecc7SHong Zhang *isseq = iscol_local; 31353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3136c5e4d11fSDmitry Karpeev } 31378d2139bdSHong Zhang 3138ddfdf956SHong Zhang /* 31399c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31409c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3141ddfdf956SHong Zhang 3142ddfdf956SHong Zhang Input Parameters: 314327430b45SBarry Smith + mat - matrix 314427430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31459c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 314627430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3147ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 314827430b45SBarry Smith 314927430b45SBarry Smith Output Parameters: 315027430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315127430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315227430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315327430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3154ddfdf956SHong Zhang */ 3155ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3156d71ae5a4SJacob Faibussowitsch { 3157040216a4SHong Zhang Vec x, cmap; 3158040216a4SHong Zhang const PetscInt *is_idx; 3159040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31609c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3161040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3162040216a4SHong Zhang Mat B = a->B; 3163040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3164a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31658b3fa1f7SHong Zhang MPI_Comm comm; 31663a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31673782ecc7SHong Zhang 31683782ecc7SHong Zhang PetscFunctionBegin; 31699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31718b3fa1f7SHong Zhang 3172ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31739566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31749566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31759566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31769566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31770a351717SHong Zhang 31789c988bcaSHong Zhang /* Get start indices */ 31799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3180ddfdf956SHong Zhang isstart -= ncols; 31819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3182040216a4SHong Zhang 31839566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31849566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31859566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3187ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31888b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3189ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31909c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31918b3fa1f7SHong Zhang } 31929566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31958b3fa1f7SHong Zhang 31969c988bcaSHong Zhang /* Get iscol_d */ 31979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31989566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 31999566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3200feb78a15SHong Zhang 32019c988bcaSHong Zhang /* Get isrow_d */ 32029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3203feb78a15SHong Zhang rstart = mat->rmap->rstart; 32049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32059566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32069c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3208feb78a15SHong Zhang 32099566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32119566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3212feb78a15SHong Zhang 32139c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32149566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32159566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3216ddfdf956SHong Zhang 32179566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 321807250d77SHong Zhang 32199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322164efcef9SHong Zhang 32229c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3223ddfdf956SHong Zhang /* off-process column indices */ 32249c988bcaSHong Zhang count = 0; 32259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3227feb78a15SHong Zhang 32289566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32299566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32308b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3231f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32329c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32331c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32341c645242SHong Zhang count++; 32358b3fa1f7SHong Zhang } 32368b3fa1f7SHong Zhang } 32379566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 323907250d77SHong Zhang 32409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3241b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3242b6d9b4e0SHong Zhang 32439566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32449c988bcaSHong Zhang *garray = cmap1; 32459c988bcaSHong Zhang 32469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250040216a4SHong Zhang } 3251040216a4SHong Zhang 3252b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3254d71ae5a4SJacob Faibussowitsch { 3255b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32561fd43edeSHong Zhang Mat M = NULL; 32573b00a383SHong Zhang MPI_Comm comm; 3258b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32593b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3260b20e2604SHong Zhang PetscInt n; 32613b00a383SHong Zhang 32623b00a383SHong Zhang PetscFunctionBegin; 32639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32643b00a383SHong Zhang 32653b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3266b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 326828b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32693b00a383SHong Zhang 32709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327128b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32723b00a383SHong Zhang 32739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327428b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32753b00a383SHong Zhang 3276b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3277b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32789566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328048a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32833b00a383SHong Zhang 32843b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32859c988bcaSHong Zhang const PetscInt *garray; 3286b20e2604SHong Zhang PetscInt BsubN; 32873b00a383SHong Zhang 3288b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32899566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32903b00a383SHong Zhang 3291b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32939566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32943b00a383SHong Zhang 32959c988bcaSHong Zhang /* Create submatrix M */ 32969566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 32973b00a383SHong Zhang 3298b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3299b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33007cfce09cSHong Zhang 33019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3302b20e2604SHong Zhang n = asub->B->cmap->N; 3303b20e2604SHong Zhang if (BsubN > n) { 3304c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33057cfce09cSHong Zhang const PetscInt *idx; 33069c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33079566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33087cfce09cSHong Zhang 33099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33107cfce09cSHong Zhang j = 0; 33119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3312b20e2604SHong Zhang for (i = 0; i < n; i++) { 33137cfce09cSHong Zhang if (j >= BsubN) break; 33149c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33157cfce09cSHong Zhang 33169c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33177cfce09cSHong Zhang idx_new[i] = idx[j++]; 331898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33197cfce09cSHong Zhang } 33209566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33217cfce09cSHong Zhang 33229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33239566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33247cfce09cSHong Zhang 3325b20e2604SHong Zhang } else if (BsubN < n) { 332698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3327b20e2604SHong Zhang } 33287cfce09cSHong Zhang 33299566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3330b20e2604SHong Zhang *submat = M; 33313b00a383SHong Zhang 3332e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33353b00a383SHong Zhang 33369566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33383b00a383SHong Zhang 33399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33413b00a383SHong Zhang } 33423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33433b00a383SHong Zhang } 33443b00a383SHong Zhang 3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3346d71ae5a4SJacob Faibussowitsch { 33471358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33483782ecc7SHong Zhang PetscInt csize; 334918e627e3SHong Zhang PetscInt n, i, j, start, end; 33504a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33513782ecc7SHong Zhang MPI_Comm comm; 33523782ecc7SHong Zhang 33533782ecc7SHong Zhang PetscFunctionBegin; 3354bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3355a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33568f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33579566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3358d5761cdaSHong Zhang if (isrow_d) { 3359d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3360d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3361d5761cdaSHong Zhang } else { 33629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3363d5761cdaSHong Zhang if (iscol_local) { 3364d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3365d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3366d5761cdaSHong Zhang } 3367d5761cdaSHong Zhang } 33688f69fa7bSHong Zhang } else { 3369e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337018e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33723782ecc7SHong Zhang if (!n) { 337318e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33743782ecc7SHong Zhang } else { 33759566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33769566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3377ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33788f69fa7bSHong Zhang } 33793782ecc7SHong Zhang 3380e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338118e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33829566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338318e627e3SHong Zhang if (!n) { 338418e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 338518e627e3SHong Zhang } else { 33869566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 338818e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 338918e627e3SHong Zhang } 339018e627e3SHong Zhang 33919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339318e627e3SHong Zhang sameRowDist = tsameDist[0]; 339418e627e3SHong Zhang } 339518e627e3SHong Zhang 339618e627e3SHong Zhang if (sameRowDist) { 3397b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33983b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 33999566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3401b20e2604SHong Zhang } else { /* sameRowDist */ 34023b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34031358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34041358a193SHong Zhang PetscBool sorted; 34059566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34079566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 340808401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34091358a193SHong Zhang 34109566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34111358a193SHong Zhang if (sorted) { 34121358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34139566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34153782ecc7SHong Zhang } 34161358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 341748c0d076SHong Zhang IS iscol_sub; 34189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 341948c0d076SHong Zhang if (iscol_sub) { 34209566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342248c0d076SHong Zhang } 34231358a193SHong Zhang } 34241358a193SHong Zhang } 34251358a193SHong Zhang } 34263782ecc7SHong Zhang 3427bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34283782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343028b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34313782ecc7SHong Zhang } else { 343248a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34331358a193SHong Zhang } 34343782ecc7SHong Zhang 34359566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34378f69fa7bSHong Zhang 3438b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3441b79d0421SJed Brown } 34423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34434aa3045dSJed Brown } 34444aa3045dSJed Brown 3445feb78a15SHong Zhang /*@C 344611a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3447feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3448feb78a15SHong Zhang 3449d083f849SBarry Smith Collective 3450feb78a15SHong Zhang 3451feb78a15SHong Zhang Input Parameters: 3452feb78a15SHong Zhang + comm - MPI communicator 3453feb78a15SHong Zhang . A - "diagonal" portion of matrix 3454b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34552ef1f0ffSBarry Smith - garray - global index of `B` columns 3456feb78a15SHong Zhang 3457feb78a15SHong Zhang Output Parameter: 34582ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 345927430b45SBarry Smith 3460feb78a15SHong Zhang Level: advanced 3461feb78a15SHong Zhang 3462feb78a15SHong Zhang Notes: 346311a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346411a5261eSBarry Smith 34652ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3466feb78a15SHong Zhang 34671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3468feb78a15SHong Zhang @*/ 3469d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3470d71ae5a4SJacob Faibussowitsch { 3471feb78a15SHong Zhang Mat_MPIAIJ *maij; 3472e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3473a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3474ce496241SStefano Zampini const PetscScalar *oa; 3475e489de8fSHong Zhang Mat Bnew; 3476feb78a15SHong Zhang PetscInt m, n, N; 34774ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3478feb78a15SHong Zhang 3479feb78a15SHong Zhang PetscFunctionBegin; 34809566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34819566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348208401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348337a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3484b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 348508401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3486feb78a15SHong Zhang 3487e489de8fSHong Zhang /* Get global columns of mat */ 34881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3489feb78a15SHong Zhang 34909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34914ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34924ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34934ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34944ab4d6f4SRichard Tran Mills 349537a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3496feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3497feb78a15SHong Zhang 3498feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3499feb78a15SHong Zhang 35009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3502feb78a15SHong Zhang 3503e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3504feb78a15SHong Zhang maij->A = A; 3505feb78a15SHong Zhang 3506a5348796SHong Zhang nz = oi[m]; 3507a5348796SHong Zhang for (i = 0; i < nz; i++) { 3508a5348796SHong Zhang col = oj[i]; 3509a5348796SHong Zhang oj[i] = garray[col]; 3510feb78a15SHong Zhang } 3511feb78a15SHong Zhang 3512e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35149566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3516e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3517e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3518e489de8fSHong Zhang maij->B = Bnew; 3519d5761cdaSHong Zhang 352008401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3521d5761cdaSHong Zhang 3522e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3523d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3524d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3526d5761cdaSHong Zhang 3527e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3528e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3529e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3530feb78a15SHong Zhang 3531a5348796SHong Zhang /* condense columns of maij->B */ 35329566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35359566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35369566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3538feb78a15SHong Zhang } 3539feb78a15SHong Zhang 3540ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35414aa3045dSJed Brown 3542d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3543d71ae5a4SJacob Faibussowitsch { 354498b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354585f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354698b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35471fd43edeSHong Zhang Mat M, Msub, B = a->B; 354898b658c4SHong Zhang MatScalar *aa; 354900e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3550a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355198b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355298b658c4SHong Zhang IS iscol_sub, iscmap; 355398b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355418e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3555a31a438cSHong Zhang MPI_Comm comm; 35567e2c5f70SBarry Smith 3557a0ff6018SBarry Smith PetscFunctionBegin; 35589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3559d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356128b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3563d5761cdaSHong Zhang 35649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356528b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3566d5761cdaSHong Zhang 35679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356828b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3569d5761cdaSHong Zhang 35709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3571d5761cdaSHong Zhang 3572d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35733b00a383SHong Zhang PetscBool flg; 35743b00a383SHong Zhang 35759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35769566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3577bcae8d28SHong Zhang 35783b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3579366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35809566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3581366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35821c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3583366a327dSHong Zhang if (allcolumns) { 3584366a327dSHong Zhang iscol_sub = iscol_local; 35859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35869566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3587366a327dSHong Zhang 35883b00a383SHong Zhang } else { 35891358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3590244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35948d2139bdSHong Zhang count = 0; 3595a31a438cSHong Zhang k = 0; 3596a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3597a31a438cSHong Zhang j = is_idx[i]; 3598a31a438cSHong Zhang if (j >= cstart && j < cend) { 3599a31a438cSHong Zhang /* diagonal part of mat */ 36008d2139bdSHong Zhang idx[count] = j; 3601366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36024a3daf6eSHong Zhang } else if (Bn) { 3603a31a438cSHong Zhang /* off-diagonal part of mat */ 3604a31a438cSHong Zhang if (j == garray[k]) { 36058d2139bdSHong Zhang idx[count] = j; 3606a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3607a31a438cSHong Zhang } else if (j > garray[k]) { 3608a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3609a31a438cSHong Zhang if (j == garray[k]) { 3610a31a438cSHong Zhang idx[count] = j; 3611a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36128d2139bdSHong Zhang } 36138d2139bdSHong Zhang } 36148d2139bdSHong Zhang } 36158d2139bdSHong Zhang } 36169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36178d2139bdSHong Zhang 36189566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36199566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36209566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3621b6d9b4e0SHong Zhang 36229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3623a31a438cSHong Zhang } 36248b3fa1f7SHong Zhang 36253b00a383SHong Zhang /* (3) Create sequential Msub */ 36269566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3627d5761cdaSHong Zhang } 36288d2139bdSHong Zhang 36299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363098b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363198b658c4SHong Zhang ii = aij->i; 36329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3633a0ff6018SBarry Smith 3634a0ff6018SBarry Smith /* 3635a0ff6018SBarry Smith m - number of local rows 3636a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3637a0ff6018SBarry Smith rstart - first row in new global matrix generated 3638a0ff6018SBarry Smith */ 36399566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364098b658c4SHong Zhang 36413b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36423b00a383SHong Zhang /* (4) Create parallel newmat */ 364398b658c4SHong Zhang PetscMPIInt rank, size; 3644bcae8d28SHong Zhang PetscInt csize; 364598b658c4SHong Zhang 36469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364800e6dbe6SBarry Smith 3649a0ff6018SBarry Smith /* 365000e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365100e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3652a0ff6018SBarry Smith */ 365300e6dbe6SBarry Smith 365400e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36559566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36566a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36579566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3658a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3659e2c4fddaSBarry Smith nlocal = m; 36606a6a5d1dSBarry Smith } else { 3661a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3662ab50ec6bSBarry Smith } 3663ab50ec6bSBarry Smith } else { 36646a6a5d1dSBarry Smith nlocal = csize; 36656a6a5d1dSBarry Smith } 36669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366700e6dbe6SBarry Smith rstart = rend - nlocal; 3668aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 366900e6dbe6SBarry Smith 367000e6dbe6SBarry Smith /* next, compute all the lengths */ 367198b658c4SHong Zhang jj = aij->j; 36729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367300e6dbe6SBarry Smith olens = dlens + m; 367400e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367500e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367600e6dbe6SBarry Smith olen = 0; 367700e6dbe6SBarry Smith dlen = 0; 367800e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 367915b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368000e6dbe6SBarry Smith else dlen++; 368100e6dbe6SBarry Smith jj++; 368200e6dbe6SBarry Smith } 368300e6dbe6SBarry Smith olens[i] = olen; 368400e6dbe6SBarry Smith dlens[i] = dlen; 368500e6dbe6SBarry Smith } 3686b6d9b4e0SHong Zhang 36879566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36889566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 368998b658c4SHong Zhang 36909566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36939566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36949566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36959566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3696d5761cdaSHong Zhang 3697d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3698a0ff6018SBarry Smith M = *newmat; 36999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370008401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37019566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3702c48de900SBarry Smith /* 3703c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3704c48de900SBarry Smith rather than the slower MatSetValues(). 3705c48de900SBarry Smith */ 3706c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3707c48de900SBarry Smith M->assembled = PETSC_FALSE; 3708a0ff6018SBarry Smith } 3709548ecf4dSHong Zhang 37103b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371398b658c4SHong Zhang 371498b658c4SHong Zhang jj = aij->j; 37159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3716a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3717a0ff6018SBarry Smith row = rstart + i; 371800e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 371915b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37209566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37219371c9d4SSatish Balay jj += nz; 37229371c9d4SSatish Balay aa += nz; 3723a0ff6018SBarry Smith } 37249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3726a0ff6018SBarry Smith 37279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3729fee21e36SBarry Smith 37309566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373198b658c4SHong Zhang 373298b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3733fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37343b00a383SHong Zhang *newmat = M; 3735f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373798b658c4SHong Zhang 3738f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374098b658c4SHong Zhang 3741f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3743bcae8d28SHong Zhang 3744bcae8d28SHong Zhang if (iscol_local) { 3745f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3747bcae8d28SHong Zhang } 374898b658c4SHong Zhang } 37493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3750a0ff6018SBarry Smith } 3751273d9f13SBarry Smith 3752df40acb1SHong Zhang /* 3753df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3754df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3755df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3756df40acb1SHong Zhang 375711a5261eSBarry Smith This requires a sequential iscol with all indices. 3758df40acb1SHong Zhang */ 3759d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3760d71ae5a4SJacob Faibussowitsch { 3761df40acb1SHong Zhang PetscMPIInt rank, size; 3762df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3763df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3764df40acb1SHong Zhang Mat M, Mreuse; 376598b658c4SHong Zhang MatScalar *aa, *vwork; 3766df40acb1SHong Zhang MPI_Comm comm; 3767df40acb1SHong Zhang Mat_SeqAIJ *aij; 37680b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3769df40acb1SHong Zhang 3770df40acb1SHong Zhang PetscFunctionBegin; 37719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3774df40acb1SHong Zhang 37750b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37769566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37780b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37800b27a90eSHong Zhang 3781df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378328b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3785df40acb1SHong Zhang } else { 37869566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3787df40acb1SHong Zhang } 3788df40acb1SHong Zhang 3789df40acb1SHong Zhang /* 3790df40acb1SHong Zhang m - number of local rows 3791df40acb1SHong Zhang n - number of columns (same on all processors) 3792df40acb1SHong Zhang rstart - first row in new global matrix generated 3793df40acb1SHong Zhang */ 37949566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37959566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3796df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3797df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3798df40acb1SHong Zhang ii = aij->i; 3799df40acb1SHong Zhang jj = aij->j; 3800df40acb1SHong Zhang 3801df40acb1SHong Zhang /* 3802df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3803df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3804df40acb1SHong Zhang */ 3805df40acb1SHong Zhang 3806df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3807df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38089566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3809df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3810df40acb1SHong Zhang nlocal = m; 3811df40acb1SHong Zhang } else { 3812df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3813df40acb1SHong Zhang } 3814df40acb1SHong Zhang } else { 3815df40acb1SHong Zhang nlocal = csize; 3816df40acb1SHong Zhang } 38179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3818df40acb1SHong Zhang rstart = rend - nlocal; 3819aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3820df40acb1SHong Zhang 3821df40acb1SHong Zhang /* next, compute all the lengths */ 38229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3823df40acb1SHong Zhang olens = dlens + m; 3824df40acb1SHong Zhang for (i = 0; i < m; i++) { 3825df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3826df40acb1SHong Zhang olen = 0; 3827df40acb1SHong Zhang dlen = 0; 3828df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3829df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3830df40acb1SHong Zhang else dlen++; 3831df40acb1SHong Zhang jj++; 3832df40acb1SHong Zhang } 3833df40acb1SHong Zhang olens[i] = olen; 3834df40acb1SHong Zhang dlens[i] = dlen; 3835df40acb1SHong Zhang } 38369566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38399566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38409566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38419566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3842df40acb1SHong Zhang } else { 3843df40acb1SHong Zhang PetscInt ml, nl; 3844df40acb1SHong Zhang 3845df40acb1SHong Zhang M = *newmat; 38469566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384708401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38489566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3849df40acb1SHong Zhang /* 3850df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3851df40acb1SHong Zhang rather than the slower MatSetValues(). 3852df40acb1SHong Zhang */ 3853df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3854df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3855df40acb1SHong Zhang } 38569566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3857df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3858df40acb1SHong Zhang ii = aij->i; 3859df40acb1SHong Zhang jj = aij->j; 38602e5835c6SStefano Zampini 38612e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3863df40acb1SHong Zhang for (i = 0; i < m; i++) { 3864df40acb1SHong Zhang row = rstart + i; 3865df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38669371c9d4SSatish Balay cwork = jj; 38678e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38689371c9d4SSatish Balay vwork = aa; 38698e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38709566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3871df40acb1SHong Zhang } 38729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3873df40acb1SHong Zhang 38749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3876df40acb1SHong Zhang *newmat = M; 3877df40acb1SHong Zhang 3878df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3879df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38809566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3882df40acb1SHong Zhang } 38833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3884df40acb1SHong Zhang } 3885df40acb1SHong Zhang 3886ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3887d71ae5a4SJacob Faibussowitsch { 38886a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3889899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3890ccd8e176SBarry Smith const PetscInt *JJ; 3891eeb24464SBarry Smith PetscBool nooffprocentries; 38926a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3893ccd8e176SBarry Smith 3894ccd8e176SBarry Smith PetscFunctionBegin; 3895aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3896899cda47SBarry Smith 38979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3899d0f46423SBarry Smith m = B->rmap->n; 3900d0f46423SBarry Smith cstart = B->cmap->rstart; 3901d0f46423SBarry Smith cend = B->cmap->rend; 3902d0f46423SBarry Smith rstart = B->rmap->rstart; 3903899cda47SBarry Smith 39049566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3905ccd8e176SBarry Smith 390676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39078f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3908ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39098e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 391008401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391108401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391208401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3913ecc77c7aSBarry Smith } 391476bd3646SJed Brown } 3915ecc77c7aSBarry Smith 39168f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3917b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39188e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3919ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3920ccd8e176SBarry Smith d = 0; 39210daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39220daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3923ccd8e176SBarry Smith } 3924ccd8e176SBarry Smith d_nnz[i] = d; 3925ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3926ccd8e176SBarry Smith } 39279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39289566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3929ccd8e176SBarry Smith 39308f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3931ccd8e176SBarry Smith ii = i + rstart; 39328e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3933ccd8e176SBarry Smith } 3934eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3935eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3938eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3939ccd8e176SBarry Smith 39406a3d2595SBarry Smith /* count number of entries below block diagonal */ 39416a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39426a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39436a3d2595SBarry Smith Aij->ld = ld; 39446a3d2595SBarry Smith for (i = 0; i < m; i++) { 39456a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39466a3d2595SBarry Smith j = 0; 3947ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39486a3d2595SBarry Smith ld[i] = j; 3949720a2405SPierre Jolivet if (J) J += nnz; 39506a3d2595SBarry Smith } 39516a3d2595SBarry Smith 39529566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3954ccd8e176SBarry Smith } 3955ccd8e176SBarry Smith 39561eea217eSSatish Balay /*@ 395711a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3958ccd8e176SBarry Smith (the default parallel PETSc format). 3959ccd8e176SBarry Smith 3960d083f849SBarry Smith Collective 3961ccd8e176SBarry Smith 3962ccd8e176SBarry Smith Input Parameters: 3963a1661176SMatthew Knepley + B - the matrix 3964d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3965d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3966ccd8e176SBarry Smith - v - optional values in the matrix 3967ccd8e176SBarry Smith 3968ccd8e176SBarry Smith Level: developer 3969ccd8e176SBarry Smith 397012251496SSatish Balay Notes: 39712ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39722ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397311a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397412251496SSatish Balay 39752ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397612251496SSatish Balay 3977a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3978a4bd8bc0SBarry Smith 3979a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3980a4bd8bc0SBarry Smith 3981a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3982a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3983a4bd8bc0SBarry Smith 398412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398512251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3986c5e4d11fSDmitry Karpeev as shown 398727430b45SBarry Smith .vb 398827430b45SBarry Smith 1 0 0 398927430b45SBarry Smith 2 0 3 P0 399027430b45SBarry Smith ------- 399127430b45SBarry Smith 4 5 6 P1 399227430b45SBarry Smith 399327430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399427430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399527430b45SBarry Smith j = {0,0,2} [size = 3] 399627430b45SBarry Smith v = {1,2,3} [size = 3] 399727430b45SBarry Smith 399827430b45SBarry Smith Process1 [P1] rows_owned=[2] 399927430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400027430b45SBarry Smith j = {0,1,2} [size = 3] 400127430b45SBarry Smith v = {4,5,6} [size = 3] 400227430b45SBarry Smith .ve 400312251496SSatish Balay 4004fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4005a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4006ccd8e176SBarry Smith @*/ 4007d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4008d71ae5a4SJacob Faibussowitsch { 4009ccd8e176SBarry Smith PetscFunctionBegin; 4010cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4012ccd8e176SBarry Smith } 4013ccd8e176SBarry Smith 4014273d9f13SBarry Smith /*@C 401511a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4016273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4017273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401820f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4019273d9f13SBarry Smith 4020d083f849SBarry Smith Collective 4021273d9f13SBarry Smith 4022273d9f13SBarry Smith Input Parameters: 40231c4f3114SJed Brown + B - the matrix 4024273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4025273d9f13SBarry Smith (same value is used for all local rows) 4026273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4027273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40282ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4029273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40303287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40313287b5eaSJed Brown the diagonal entry even if it is zero. 4032273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4033273d9f13SBarry Smith submatrix (same value is used for all local rows). 4034273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4035273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40362ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4037273d9f13SBarry Smith structure. The size of this array is equal to the number 4038273d9f13SBarry Smith of local rows, i.e 'm'. 4039273d9f13SBarry Smith 40402920cce0SJacob Faibussowitsch Example Usage: 404127430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404227430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404327430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404427430b45SBarry Smith as follows 404527430b45SBarry Smith 404627430b45SBarry Smith .vb 404727430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404827430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 404927430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405027430b45SBarry Smith ------------------------------------- 405127430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405227430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405327430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405427430b45SBarry Smith ------------------------------------- 405527430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405627430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405727430b45SBarry Smith .ve 405827430b45SBarry Smith 405927430b45SBarry Smith This can be represented as a collection of submatrices as 406027430b45SBarry Smith .vb 406127430b45SBarry Smith A B C 406227430b45SBarry Smith D E F 406327430b45SBarry Smith G H I 406427430b45SBarry Smith .ve 406527430b45SBarry Smith 406627430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406727430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406827430b45SBarry Smith 406927430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407027430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407127430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407227430b45SBarry Smith 407327430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407427430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407527430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407627430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407727430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 407827430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 407927430b45SBarry Smith 408020f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408120f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408227430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408320f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 408427430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408520f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408627430b45SBarry Smith .vb 408727430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408827430b45SBarry Smith proc1 dnz = 3, o_nz = 2 408927430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409027430b45SBarry Smith .ve 409120f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409227430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409327430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409427430b45SBarry Smith 34 values. 409527430b45SBarry Smith 409620f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409727430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409820f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 409927430b45SBarry Smith .vb 410027430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410127430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410227430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410327430b45SBarry Smith .ve 410427430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410527430b45SBarry Smith hence pre-allocation is perfect. 410627430b45SBarry Smith 410727430b45SBarry Smith Level: intermediate 410827430b45SBarry Smith 410927430b45SBarry Smith Notes: 411049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411149a6f317SBarry Smith 411227430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41130598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4114651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4115273d9f13SBarry Smith 4116273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4117273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4118273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4119273d9f13SBarry Smith 4120273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4121a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4122a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4123a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4124a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4125a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4126a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4127a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4128a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4129273d9f13SBarry Smith 41302ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4131273d9f13SBarry Smith 413227430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4133aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413427430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4135aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4136aa95bbe8SBarry Smith 41371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4138a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4139273d9f13SBarry Smith @*/ 4140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4141d71ae5a4SJacob Faibussowitsch { 4142273d9f13SBarry Smith PetscFunctionBegin; 41436ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41446ba663aaSJed Brown PetscValidType(B, 1); 4145cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4147273d9f13SBarry Smith } 4148273d9f13SBarry Smith 414958d36128SBarry Smith /*@ 415011a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41518f8f2f0dSBarry Smith CSR format for the local rows. 41522fb0ec9aSBarry Smith 4153d083f849SBarry Smith Collective 41542fb0ec9aSBarry Smith 41552fb0ec9aSBarry Smith Input Parameters: 41562fb0ec9aSBarry Smith + comm - MPI communicator 415711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41582fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4159d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4160d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4161d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4162d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41635693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41645693b835SJunchao Zhang . j - global column indices 4165f1f2ae84SBarry Smith - a - optional matrix values 41662fb0ec9aSBarry Smith 41672fb0ec9aSBarry Smith Output Parameter: 41682fb0ec9aSBarry Smith . mat - the matrix 416903bfb495SBarry Smith 41702fb0ec9aSBarry Smith Level: intermediate 41712fb0ec9aSBarry Smith 41722fb0ec9aSBarry Smith Notes: 41732ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4174d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4175d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41762fb0ec9aSBarry Smith 41772ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417812251496SSatish Balay 41795693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4180a4bd8bc0SBarry Smith 41815693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4182a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4183a4bd8bc0SBarry Smith 418412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4185d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4186c5e4d11fSDmitry Karpeev as shown 41872ef1f0ffSBarry Smith .vb 41882ef1f0ffSBarry Smith 1 0 0 41892ef1f0ffSBarry Smith 2 0 3 P0 41902ef1f0ffSBarry Smith ------- 41912ef1f0ffSBarry Smith 4 5 6 P1 41928f8f2f0dSBarry Smith 41932ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41942ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41952ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41962ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41972fb0ec9aSBarry Smith 41982ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41992ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42002ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42012ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42022ef1f0ffSBarry Smith .ve 42032ef1f0ffSBarry Smith 4204d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42055693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42062fb0ec9aSBarry Smith @*/ 4207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4208d71ae5a4SJacob Faibussowitsch { 42092fb0ec9aSBarry Smith PetscFunctionBegin; 421008401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42149566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42159566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42182fb0ec9aSBarry Smith } 42192fb0ec9aSBarry Smith 42208f8f2f0dSBarry Smith /*@ 422111a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42222ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42232ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42246a3d2595SBarry Smith 42256a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42268f8f2f0dSBarry Smith 42278f8f2f0dSBarry Smith Collective 42288f8f2f0dSBarry Smith 42298f8f2f0dSBarry Smith Input Parameters: 42308f8f2f0dSBarry Smith + mat - the matrix 423111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42328f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423311a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42348f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42378f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42388f8f2f0dSBarry Smith . J - column indices 42398f8f2f0dSBarry Smith - v - matrix values 42408f8f2f0dSBarry Smith 42412ef1f0ffSBarry Smith Level: deprecated 42428f8f2f0dSBarry Smith 42431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4244a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42458f8f2f0dSBarry Smith @*/ 4246d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4247d71ae5a4SJacob Faibussowitsch { 42486a3d2595SBarry Smith PetscInt nnz, i; 42498f8f2f0dSBarry Smith PetscBool nooffprocentries; 42508f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4251fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4252fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42538f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42546a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42556a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42568f8f2f0dSBarry Smith 42578f8f2f0dSBarry Smith PetscFunctionBegin; 4258aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426008401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426108401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42628f8f2f0dSBarry Smith 42639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42658f8f2f0dSBarry Smith 42668f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42674c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42684c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42694c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42704c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42714c17f1ccSBarry Smith } 42724c17f1ccSBarry Smith } 42738f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42748f8f2f0dSBarry Smith Iii = Ii[i]; 42758f8f2f0dSBarry Smith ldi = ld[i]; 42768f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42808f8f2f0dSBarry Smith ad += md; 42818f8f2f0dSBarry Smith ao += nnz - md; 42828f8f2f0dSBarry Smith } 42838f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42848f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42899566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42928f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42948f8f2f0dSBarry Smith } 42958f8f2f0dSBarry Smith 42966a3d2595SBarry Smith /*@ 429711a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42986a3d2595SBarry Smith 42996a3d2595SBarry Smith Collective 43006a3d2595SBarry Smith 43016a3d2595SBarry Smith Input Parameters: 43026a3d2595SBarry Smith + mat - the matrix 43036a3d2595SBarry Smith - v - matrix values, stored by row 43046a3d2595SBarry Smith 43056a3d2595SBarry Smith Level: intermediate 43066a3d2595SBarry Smith 4307a4bd8bc0SBarry Smith Notes: 43086a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43096a3d2595SBarry Smith 4310a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4311a4bd8bc0SBarry Smith 43121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4313a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43146a3d2595SBarry Smith @*/ 4315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4316d71ae5a4SJacob Faibussowitsch { 43176a3d2595SBarry Smith PetscInt nnz, i, m; 43186a3d2595SBarry Smith PetscBool nooffprocentries; 43196a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43206a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43216a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43226a3d2595SBarry Smith PetscScalar *ad, *ao; 43236a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43246a3d2595SBarry Smith PetscInt ldi, Iii, md; 43256a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43266a3d2595SBarry Smith 43276a3d2595SBarry Smith PetscFunctionBegin; 43286a3d2595SBarry Smith m = mat->rmap->n; 43296a3d2595SBarry Smith 43306a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43316a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43326a3d2595SBarry Smith Iii = 0; 43336a3d2595SBarry Smith for (i = 0; i < m; i++) { 43346a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43356a3d2595SBarry Smith ldi = ld[i]; 43366a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43376a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43386a3d2595SBarry Smith ad += md; 4339810441c8SPierre Jolivet if (ao) { 4340810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4341810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43426a3d2595SBarry Smith ao += nnz - md; 4343810441c8SPierre Jolivet } 43446a3d2595SBarry Smith Iii += nnz; 43456a3d2595SBarry Smith } 43466a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43476a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43486a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43496a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43506a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43516a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43526a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43536a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43546a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43556a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43576a3d2595SBarry Smith } 43586a3d2595SBarry Smith 4359273d9f13SBarry Smith /*@C 436011a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4361273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4362273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43632ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4364273d9f13SBarry Smith 4365d083f849SBarry Smith Collective 4366273d9f13SBarry Smith 4367273d9f13SBarry Smith Input Parameters: 4368273d9f13SBarry Smith + comm - MPI communicator 436911a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4370273d9f13SBarry Smith This value should be the same as the local size used in creating the 4371273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4372273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437345f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4374273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4377273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4378273d9f13SBarry Smith (same value is used for all local rows) 4379273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4380273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43812ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4382273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4383273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4384273d9f13SBarry Smith submatrix (same value is used for all local rows). 4385273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4386273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43872ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4388273d9f13SBarry Smith structure. The size of this array is equal to the number 4389273d9f13SBarry Smith of local rows, i.e 'm'. 4390273d9f13SBarry Smith 4391273d9f13SBarry Smith Output Parameter: 4392273d9f13SBarry Smith . A - the matrix 4393273d9f13SBarry Smith 439427430b45SBarry Smith Options Database Keys: 439527430b45SBarry Smith + -mat_no_inode - Do not use inodes 439627430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 439827430b45SBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix. 439927430b45SBarry Smith Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440027430b45SBarry Smith 44012ef1f0ffSBarry Smith Level: intermediate 44022ef1f0ffSBarry Smith 440327430b45SBarry Smith Notes: 440477433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4405f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4407175b88e8SBarry Smith 440849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 440949a6f317SBarry Smith 44102ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44112ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4412273d9f13SBarry Smith storage requirements for this matrix. 4413273d9f13SBarry Smith 441411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4415273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4416273d9f13SBarry Smith that argument. 4417273d9f13SBarry Smith 4418273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4419273d9f13SBarry Smith (possibly both). 4420273d9f13SBarry Smith 442133a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 442233a7c187SSatish Balay first m0 rows belong to process 0, the next m1 rows belong to 442333a7c187SSatish Balay process 1, the next m2 rows belong to process 2 etc.. where 442433a7c187SSatish Balay m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 442533a7c187SSatish Balay values corresponding to [m x N] submatrix. 4426273d9f13SBarry Smith 442733a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 442833a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4429df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443033a7c187SSatish Balay 443133a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443233a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443333a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443433a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443533a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443633a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 443733a7c187SSatish Balay illustrates this concept. 443833a7c187SSatish Balay 443933a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444033a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444133a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444233a7c187SSatish Balay local matrix (a rectangular submatrix). 4443273d9f13SBarry Smith 44442ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4445273d9f13SBarry Smith 444697d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44472ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4448da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4449da57b5cdSKarl Rupp .vb 44502ef1f0ffSBarry Smith MatCreate(..., &A); 44512ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44522ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44532ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4454da57b5cdSKarl Rupp .ve 445597d05335SKris Buschelman 4456273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4457273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4458273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4459273d9f13SBarry Smith 44602920cce0SJacob Faibussowitsch Example Usage: 4461273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4462273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4463273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4464efc377ccSKarl Rupp as follows 4465273d9f13SBarry Smith 4466273d9f13SBarry Smith .vb 4467273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4468273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4469273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4470273d9f13SBarry Smith ------------------------------------- 4471273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4472273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4473273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4474273d9f13SBarry Smith ------------------------------------- 4475273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4476273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4477273d9f13SBarry Smith .ve 4478273d9f13SBarry Smith 4479da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4480273d9f13SBarry Smith 4481273d9f13SBarry Smith .vb 4482273d9f13SBarry Smith A B C 4483273d9f13SBarry Smith D E F 4484273d9f13SBarry Smith G H I 4485273d9f13SBarry Smith .ve 4486273d9f13SBarry Smith 4487273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4488273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4489273d9f13SBarry Smith 4490273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4491273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4492273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4493273d9f13SBarry Smith 4494273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4495273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4496273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4497273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 449827430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4499273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4500273d9f13SBarry Smith 45012ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45022ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4503273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45042ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4505273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45062ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4507273d9f13SBarry Smith .vb 450827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 450927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4511273d9f13SBarry Smith .ve 45122ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4513273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4514273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4515273d9f13SBarry Smith 34 values. 4516273d9f13SBarry Smith 45172ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4518a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4519da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4520273d9f13SBarry Smith .vb 452127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4524273d9f13SBarry Smith .ve 4525273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4526273d9f13SBarry Smith hence pre-allocation is perfect. 4527273d9f13SBarry Smith 45281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4529db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()` 4530273d9f13SBarry Smith @*/ 4531d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4532d71ae5a4SJacob Faibussowitsch { 4533b1d57f15SBarry Smith PetscMPIInt size; 4534273d9f13SBarry Smith 4535273d9f13SBarry Smith PetscFunctionBegin; 45369566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4539273d9f13SBarry Smith if (size > 1) { 45409566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45419566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4542273d9f13SBarry Smith } else { 45439566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4545273d9f13SBarry Smith } 45463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4547273d9f13SBarry Smith } 4548195d93cdSBarry Smith 45490b98dbb4SBarry Smith /*MC 45500b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45510b98dbb4SBarry Smith 45520b98dbb4SBarry Smith Synopsis: 45530b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45540b98dbb4SBarry Smith 45550b98dbb4SBarry Smith Not Collective 45560b98dbb4SBarry Smith 45570b98dbb4SBarry Smith Input Parameter: 45580b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45590b98dbb4SBarry Smith 45600b98dbb4SBarry Smith Output Parameters: 45610b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45624cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45632ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45640b98dbb4SBarry Smith - ierr - error code 45650b98dbb4SBarry Smith 45660b98dbb4SBarry Smith Level: advanced 45670b98dbb4SBarry Smith 45680b98dbb4SBarry Smith Note: 45690b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45700b98dbb4SBarry Smith 45711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45720b98dbb4SBarry Smith M*/ 45730b98dbb4SBarry Smith 45740b98dbb4SBarry Smith /*MC 45750b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45760b98dbb4SBarry Smith 45770b98dbb4SBarry Smith Synopsis: 45780b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith Not Collective 45810b98dbb4SBarry Smith 45820b98dbb4SBarry Smith Input Parameters: 45830b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45840b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45854cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45862ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45870b98dbb4SBarry Smith - ierr - error code 45880b98dbb4SBarry Smith 45890b98dbb4SBarry Smith Level: advanced 45900b98dbb4SBarry Smith 45911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45920b98dbb4SBarry Smith M*/ 45930b98dbb4SBarry Smith 4594127ca0efSMatthew Knepley /*@C 45950ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4596127ca0efSMatthew Knepley 45972ef1f0ffSBarry Smith Not Collective 4598127ca0efSMatthew Knepley 4599127ca0efSMatthew Knepley Input Parameter: 460011a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4601127ca0efSMatthew Knepley 4602127ca0efSMatthew Knepley Output Parameters: 460311a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 460411a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46052ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4606127ca0efSMatthew Knepley 46070ab4885dSBarry Smith Level: intermediate 46080ab4885dSBarry Smith 460911a5261eSBarry Smith Note: 46102ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46112ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46122ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4613127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4614127ca0efSMatthew Knepley 4615fe59aa6dSJacob Faibussowitsch Fortran Notes: 46160ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4617127ca0efSMatthew Knepley 4618fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4619127ca0efSMatthew Knepley @*/ 4620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4621d71ae5a4SJacob Faibussowitsch { 4622195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462304cf37c7SBarry Smith PetscBool flg; 4624b1d57f15SBarry Smith 4625195d93cdSBarry Smith PetscFunctionBegin; 46269566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 462728b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 462821e72a00SBarry Smith if (Ad) *Ad = a->A; 462921e72a00SBarry Smith if (Ao) *Ao = a->B; 463021e72a00SBarry Smith if (colmap) *colmap = a->garray; 46313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4632195d93cdSBarry Smith } 4633a2243be0SBarry Smith 4634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4635d71ae5a4SJacob Faibussowitsch { 4636110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46379b8102ccSHong Zhang PetscInt *indx; 4638110bb6e1SHong Zhang PetscScalar *values; 4639421ddf4dSJunchao Zhang MatType rootType; 46409b8102ccSHong Zhang 46419b8102ccSHong Zhang PetscFunctionBegin; 46429566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4643110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4644110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4645110bb6e1SHong Zhang 464648a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4647a22543b6SHong Zhang /* Check sum(n) = N */ 46481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 464908401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4650a22543b6SHong Zhang 46519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46529b8102ccSHong Zhang rstart -= m; 46539b8102ccSHong Zhang 4654d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46559b8102ccSHong Zhang for (i = 0; i < m; i++) { 46569566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46579566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46589566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46599b8102ccSHong Zhang } 46609b8102ccSHong Zhang 46619566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46639566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46649566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46659566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46669566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46689566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4669d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46709566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46719b8102ccSHong Zhang } 46729b8102ccSHong Zhang 4673110bb6e1SHong Zhang /* numeric phase */ 46749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46759b8102ccSHong Zhang for (i = 0; i < m; i++) { 46769566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46779b8102ccSHong Zhang Ii = i + rstart; 46789566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46799566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46809b8102ccSHong Zhang } 46819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4684c5d6d63eSBarry Smith } 4685c5d6d63eSBarry Smith 4686d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4687d71ae5a4SJacob Faibussowitsch { 46886718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 468951a7d1a8SHong Zhang 469051a7d1a8SHong Zhang PetscFunctionBegin; 46913ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46929566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46939566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46949566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46959566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46969566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46979566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47049566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470751a7d1a8SHong Zhang } 470851a7d1a8SHong Zhang 4709c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4710c6db04a5SJed Brown #include <petscbt.h> 47114ebed01fSBarry Smith 4712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4713d71ae5a4SJacob Faibussowitsch { 4714ce94432eSBarry Smith MPI_Comm comm; 471555d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4716b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4717a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4718b1d57f15SBarry Smith PetscInt proc, m; 4719b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4720b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4721b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472255d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472355d1abb9SHong Zhang MPI_Status *status; 4724fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4725dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 472655d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4727776b82aeSLisandro Dalcin PetscContainer container; 472855d1abb9SHong Zhang 472955d1abb9SHong Zhang PetscFunctionBegin; 47309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47323c2c1871SHong Zhang 47339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 473555d1abb9SHong Zhang 47369566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 473728b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47389566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4740fff043a9SJunchao Zhang aa = a_a; 4741bf0cc555SLisandro Dalcin 474255d1abb9SHong Zhang bi = merge->bi; 474355d1abb9SHong Zhang bj = merge->bj; 474455d1abb9SHong Zhang buf_ri = merge->buf_ri; 474555d1abb9SHong Zhang buf_rj = merge->buf_rj; 474655d1abb9SHong Zhang 47479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47487a2fc3feSBarry Smith owners = merge->rowmap->range; 474955d1abb9SHong Zhang len_s = merge->len_s; 475055d1abb9SHong Zhang 475155d1abb9SHong Zhang /* send and recv matrix values */ 47529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47539566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 475455d1abb9SHong Zhang 47559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 475655d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 475755d1abb9SHong Zhang if (!len_s[proc]) continue; 475855d1abb9SHong Zhang i = owners[proc]; 47599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476055d1abb9SHong Zhang k++; 476155d1abb9SHong Zhang } 476255d1abb9SHong Zhang 47639566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47649566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47659566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 476655d1abb9SHong Zhang 47679566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47689566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 476955d1abb9SHong Zhang 477055d1abb9SHong Zhang /* insert mat values of mpimat */ 47719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47729566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477355d1abb9SHong Zhang 477455d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 477555d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4776f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 477755d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4778a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 477955d1abb9SHong Zhang } 478055d1abb9SHong Zhang 478155d1abb9SHong Zhang /* set values of ba */ 47827a2fc3feSBarry Smith m = merge->rowmap->n; 478355d1abb9SHong Zhang for (i = 0; i < m; i++) { 478455d1abb9SHong Zhang arow = owners[rank] + i; 478555d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 478655d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47879566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 478855d1abb9SHong Zhang 478955d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479055d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479155d1abb9SHong Zhang aj = a->j + ai[arow]; 4792fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479355d1abb9SHong Zhang nextaj = 0; 479455d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 479555d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 479655d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 479755d1abb9SHong Zhang } 479855d1abb9SHong Zhang } 479955d1abb9SHong Zhang 480055d1abb9SHong Zhang /* add received vals into ba */ 480155d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480255d1abb9SHong Zhang /* i-th row */ 480355d1abb9SHong Zhang if (i == *nextrow[k]) { 480455d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4805f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4806f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 480755d1abb9SHong Zhang nextaj = 0; 480855d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480955d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481055d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481155d1abb9SHong Zhang } 481255d1abb9SHong Zhang } 48139371c9d4SSatish Balay nextrow[k]++; 48149371c9d4SSatish Balay nextai[k]++; 481555d1abb9SHong Zhang } 481655d1abb9SHong Zhang } 48179566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 481855d1abb9SHong Zhang } 48199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482255d1abb9SHong Zhang 48239566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48249566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48259566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48269566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48279566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482955d1abb9SHong Zhang } 483038f152feSBarry Smith 4831d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4832d71ae5a4SJacob Faibussowitsch { 483355a3bba9SHong Zhang Mat B_mpi; 4834c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4835b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4836b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4837d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4838a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4839c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4840b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484155d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484258cb9c82SHong Zhang MPI_Status *status; 48430298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4844be0fcf8dSHong Zhang PetscBT lnkbt; 484551a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4846776b82aeSLisandro Dalcin PetscContainer container; 484702c68681SHong Zhang 4848e5f2cdd8SHong Zhang PetscFunctionBegin; 48499566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48503c2c1871SHong Zhang 485138f152feSBarry Smith /* make sure it is a PETSc comm */ 48529566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 485555d1abb9SHong Zhang 48569566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4858e5f2cdd8SHong Zhang 48596abd8857SHong Zhang /* determine row ownership */ 48609566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48619566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 486755d1abb9SHong Zhang 48687a2fc3feSBarry Smith m = merge->rowmap->n; 48697a2fc3feSBarry Smith owners = merge->rowmap->range; 48706abd8857SHong Zhang 48716abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48723e06a4e6SHong Zhang len_s = merge->len_s; 487351a7d1a8SHong Zhang 48742257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4875c2234fe3SHong Zhang merge->nsend = 0; 4876409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48772257cef7SHong Zhang len_si[proc] = 0; 48783e06a4e6SHong Zhang if (proc == rank) { 48796abd8857SHong Zhang len_s[proc] = 0; 48803e06a4e6SHong Zhang } else { 488102c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48823e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48833e06a4e6SHong Zhang } 48843e06a4e6SHong Zhang if (len_s[proc]) { 4885c2234fe3SHong Zhang merge->nsend++; 48862257cef7SHong Zhang nrows = 0; 48872257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48882257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48892257cef7SHong Zhang } 48902257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48912257cef7SHong Zhang len += len_si[proc]; 4892409913e3SHong Zhang } 489358cb9c82SHong Zhang } 4894409913e3SHong Zhang 48952257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48969566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48979566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4898671beff6SHong Zhang 48993e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49009566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49019566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490202c68681SHong Zhang 49033e06a4e6SHong Zhang /* post the Isend of j-structure */ 49049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49053e06a4e6SHong Zhang 49062257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4907409913e3SHong Zhang if (!len_s[proc]) continue; 490802c68681SHong Zhang i = owners[proc]; 49099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491051a7d1a8SHong Zhang k++; 491151a7d1a8SHong Zhang } 491251a7d1a8SHong Zhang 49133e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49149566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49159566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 491602c68681SHong Zhang 491702c68681SHong Zhang /* send and recv i-structure */ 49189566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49199566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492002c68681SHong Zhang 49219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49223e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49232257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 492402c68681SHong Zhang if (!len_s[proc]) continue; 49253e06a4e6SHong Zhang /* form outgoing message for i-structure: 49263e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49273e06a4e6SHong Zhang [1:nrows]: row index (global) 49283e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49293e06a4e6SHong Zhang */ 49302257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49313e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49323e06a4e6SHong Zhang buf_si[0] = nrows; 49333e06a4e6SHong Zhang buf_si_i[0] = 0; 49343e06a4e6SHong Zhang nrows = 0; 49353e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49363e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49373e06a4e6SHong Zhang if (anzi) { 49383e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49393e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49403e06a4e6SHong Zhang nrows++; 49413e06a4e6SHong Zhang } 49423e06a4e6SHong Zhang } 49439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 494402c68681SHong Zhang k++; 49452257cef7SHong Zhang buf_si += len_si[proc]; 494602c68681SHong Zhang } 49472257cef7SHong Zhang 49489566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49499566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495002c68681SHong Zhang 49519566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495248a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49533e06a4e6SHong Zhang 49549566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49559566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49569566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49579566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49589566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49599566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49609566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496158cb9c82SHong Zhang 4962bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496358cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 496558cb9c82SHong Zhang bi[0] = 0; 496658cb9c82SHong Zhang 4967be0fcf8dSHong Zhang /* create and initialize a linked list */ 4968be0fcf8dSHong Zhang nlnk = N + 1; 49699566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497058cb9c82SHong Zhang 4971bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4972bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49739566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49742205254eSKarl Rupp 497558cb9c82SHong Zhang current_space = free_space; 497658cb9c82SHong Zhang 4977bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49791d79065fSBarry Smith 49803e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49812257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49823e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49833e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4984a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49853e06a4e6SHong Zhang } 49862257cef7SHong Zhang 4987d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4988bcc1bcd5SHong Zhang len = 0; 498958cb9c82SHong Zhang for (i = 0; i < m; i++) { 499058cb9c82SHong Zhang bnzi = 0; 499158cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499258cb9c82SHong Zhang arow = owners[rank] + i; 499358cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 499458cb9c82SHong Zhang aj = a->j + ai[arow]; 49959566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 499658cb9c82SHong Zhang bnzi += nlnk; 499758cb9c82SHong Zhang /* add received col data into lnk */ 499851a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 499955d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50003e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50013e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50029566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50033e06a4e6SHong Zhang bnzi += nlnk; 50049371c9d4SSatish Balay nextrow[k]++; 50059371c9d4SSatish Balay nextai[k]++; 50063e06a4e6SHong Zhang } 500758cb9c82SHong Zhang } 5008bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 500958cb9c82SHong Zhang 501058cb9c82SHong Zhang /* if free space is not available, make more free space */ 501148a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501258cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50139566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50149566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5015bcc1bcd5SHong Zhang 501658cb9c82SHong Zhang current_space->array += bnzi; 501758cb9c82SHong Zhang current_space->local_used += bnzi; 501858cb9c82SHong Zhang current_space->local_remaining -= bnzi; 501958cb9c82SHong Zhang 502058cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502158cb9c82SHong Zhang } 5022bcc1bcd5SHong Zhang 50239566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5024bcc1bcd5SHong Zhang 50259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50269566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50279566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5028409913e3SHong Zhang 5029bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50309566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50319566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503254b84b50SHong Zhang if (n == PETSC_DECIDE) { 50339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 503454b84b50SHong Zhang } else { 50359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 503654b84b50SHong Zhang } 50379566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50389566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50399566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5040d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50419566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504258cb9c82SHong Zhang 504390431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50446abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5045affca5deSHong Zhang merge->bi = bi; 5046affca5deSHong Zhang merge->bj = bj; 504702c68681SHong Zhang merge->buf_ri = buf_ri; 504802c68681SHong Zhang merge->buf_rj = buf_rj; 50490298fd71SBarry Smith merge->coi = NULL; 50500298fd71SBarry Smith merge->coj = NULL; 50510298fd71SBarry Smith merge->owners_co = NULL; 5052affca5deSHong Zhang 50539566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5054bf0cc555SLisandro Dalcin 5055affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50569566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50579566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50589566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50599566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50609566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5061affca5deSHong Zhang *mpimat = B_mpi; 506238f152feSBarry Smith 50639566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5065e5f2cdd8SHong Zhang } 506625616d81SHong Zhang 5067d4036a1aSHong Zhang /*@C 506811a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5069d4036a1aSHong Zhang matrices from each processor 5070d4036a1aSHong Zhang 5071d083f849SBarry Smith Collective 5072d4036a1aSHong Zhang 5073d4036a1aSHong Zhang Input Parameters: 5074d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5075d4036a1aSHong Zhang . seqmat - the input sequential matrices 507611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 507711a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 507811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5079d4036a1aSHong Zhang 5080d4036a1aSHong Zhang Output Parameter: 5081d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5082d4036a1aSHong Zhang 5083d4036a1aSHong Zhang Level: advanced 5084d4036a1aSHong Zhang 508511a5261eSBarry Smith Note: 5086d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5087d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5088*b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50892ef1f0ffSBarry Smith 50901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5091d4036a1aSHong Zhang @*/ 5092d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5093d71ae5a4SJacob Faibussowitsch { 50947e63b356SHong Zhang PetscMPIInt size; 509555d1abb9SHong Zhang 509655d1abb9SHong Zhang PetscFunctionBegin; 50979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50987e63b356SHong Zhang if (size == 1) { 50999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51007e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51019566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51027e63b356SHong Zhang } else { 51039566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51047e63b356SHong Zhang } 51059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51077e63b356SHong Zhang } 51089566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 510948a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51109566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511355d1abb9SHong Zhang } 51144ebed01fSBarry Smith 5115bc08b0f1SBarry Smith /*@ 51162920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51178a9c020eSBarry Smith 51188a9c020eSBarry Smith Not Collective 51198a9c020eSBarry Smith 51202fe279fdSBarry Smith Input Parameter: 512120f4b53cSBarry Smith . A - the matrix 51228a9c020eSBarry Smith 51238a9c020eSBarry Smith Output Parameter: 51248a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51258a9c020eSBarry Smith 51268a9c020eSBarry Smith Level: developer 51278a9c020eSBarry Smith 51288a9c020eSBarry Smith Notes: 51292920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51302920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51312920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51322920cce0SJacob Faibussowitsch 513311a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51348a9c020eSBarry Smith 51352920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51362920cce0SJacob Faibussowitsch 513711a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51388a9c020eSBarry Smith 51391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51408a9c020eSBarry Smith @*/ 5141d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5142d71ae5a4SJacob Faibussowitsch { 51438a9c020eSBarry Smith PetscBool mpi; 51448a9c020eSBarry Smith 51458a9c020eSBarry Smith PetscFunctionBegin; 51468a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51478a9c020eSBarry Smith if (mpi) { 51488a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51498a9c020eSBarry Smith } else { 51508a9c020eSBarry Smith *A_loc = A; 51518a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51528a9c020eSBarry Smith } 51533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51548a9c020eSBarry Smith } 51558a9c020eSBarry Smith 51568a9c020eSBarry Smith /*@ 51572920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 515825616d81SHong Zhang 515932fba14fSHong Zhang Not Collective 516025616d81SHong Zhang 516125616d81SHong Zhang Input Parameters: 516225616d81SHong Zhang + A - the matrix 516311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 516425616d81SHong Zhang 516525616d81SHong Zhang Output Parameter: 516625616d81SHong Zhang . A_loc - the local sequential matrix generated 516725616d81SHong Zhang 516825616d81SHong Zhang Level: developer 516925616d81SHong Zhang 517077c65a98SStefano Zampini Notes: 51712920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51722920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51732920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51742920cce0SJacob Faibussowitsch 517511a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51768a9c020eSBarry Smith 51772920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51782920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51792920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51802920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518177c65a98SStefano Zampini 51821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518325616d81SHong Zhang @*/ 5184d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5185d71ae5a4SJacob Faibussowitsch { 518601b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5187b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5188b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5189ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5190ce496241SStefano Zampini PetscScalar *ca, *cam; 519177c65a98SStefano Zampini PetscMPIInt size; 5192d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51935a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51948661ff28SBarry Smith PetscBool match; 519525616d81SHong Zhang 519625616d81SHong Zhang PetscFunctionBegin; 51979566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 519828b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520077c65a98SStefano Zampini if (size == 1) { 520177c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520377c65a98SStefano Zampini *A_loc = mpimat->A; 520477c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52059566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 520677c65a98SStefano Zampini } 52073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520877c65a98SStefano Zampini } 520970a9ba44SHong Zhang 52109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5211f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5212f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52139371c9d4SSatish Balay ai = a->i; 52149371c9d4SSatish Balay aj = a->j; 52159371c9d4SSatish Balay bi = b->i; 52169371c9d4SSatish Balay bj = b->j; 52179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5219ce496241SStefano Zampini aa = aav; 5220ce496241SStefano Zampini ba = bav; 522101b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5223dea91ad1SHong Zhang ci[0] = 0; 5224ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5227dea91ad1SHong Zhang k = 0; 522801b7ae99SHong Zhang for (i = 0; i < am; i++) { 52295a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52305a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523101b7ae99SHong Zhang /* off-diagonal portion of A */ 52325a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52335a7d977cSHong Zhang col = cmap[*bj]; 52345a7d977cSHong Zhang if (col >= cstart) break; 52359371c9d4SSatish Balay cj[k] = col; 52369371c9d4SSatish Balay bj++; 52375a7d977cSHong Zhang ca[k++] = *ba++; 52385a7d977cSHong Zhang } 52395a7d977cSHong Zhang /* diagonal portion of A */ 52405a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52415a7d977cSHong Zhang cj[k] = cstart + *aj++; 52425a7d977cSHong Zhang ca[k++] = *aa++; 52435a7d977cSHong Zhang } 52445a7d977cSHong Zhang /* off-diagonal portion of A */ 52455a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52465a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52475a7d977cSHong Zhang ca[k++] = *ba++; 52485a7d977cSHong Zhang } 524925616d81SHong Zhang } 5250dea91ad1SHong Zhang /* put together the new matrix */ 52519566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5252dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5253dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5254dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5255e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5256e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5257dea91ad1SHong Zhang mat->nonew = 0; 52585a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52595a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5260fff043a9SJunchao Zhang ci = mat->i; 5261fff043a9SJunchao Zhang cj = mat->j; 52629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52635a7d977cSHong Zhang for (i = 0; i < am; i++) { 52645a7d977cSHong Zhang /* off-diagonal portion of A */ 52655a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52665a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52675a7d977cSHong Zhang col = cmap[*bj]; 52685a7d977cSHong Zhang if (col >= cstart) break; 52699371c9d4SSatish Balay *cam++ = *ba++; 52709371c9d4SSatish Balay bj++; 52715a7d977cSHong Zhang } 52725a7d977cSHong Zhang /* diagonal portion of A */ 5273ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5274a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52755a7d977cSHong Zhang /* off-diagonal portion of A */ 5276f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52779371c9d4SSatish Balay *cam++ = *ba++; 52789371c9d4SSatish Balay bj++; 5279f33d1a9aSHong Zhang } 52805a7d977cSHong Zhang } 52819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52859566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528725616d81SHong Zhang } 528825616d81SHong Zhang 5289ed502f03SStefano Zampini /*@ 529011a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52914cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5292ed502f03SStefano Zampini 5293ed502f03SStefano Zampini Not Collective 5294ed502f03SStefano Zampini 5295ed502f03SStefano Zampini Input Parameters: 5296ed502f03SStefano Zampini + A - the matrix 529711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5298ed502f03SStefano Zampini 5299d8d19677SJose E. Roman Output Parameters: 53002ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5301ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5302ed502f03SStefano Zampini 5303ed502f03SStefano Zampini Level: developer 5304ed502f03SStefano Zampini 530511a5261eSBarry Smith Note: 53062ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53074cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5308ed502f03SStefano Zampini 53091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5310ed502f03SStefano Zampini @*/ 5311d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5312d71ae5a4SJacob Faibussowitsch { 5313ed502f03SStefano Zampini Mat Ao, Ad; 5314ed502f03SStefano Zampini const PetscInt *cmap; 5315ed502f03SStefano Zampini PetscMPIInt size; 5316ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5317ed502f03SStefano Zampini 5318ed502f03SStefano Zampini PetscFunctionBegin; 53199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5321ed502f03SStefano Zampini if (size == 1) { 5322ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53239566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5324ed502f03SStefano Zampini *A_loc = Ad; 5325ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53269566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5327ed502f03SStefano Zampini } 53289566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5330ed502f03SStefano Zampini } 53319566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53329566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5333ed502f03SStefano Zampini if (f) { 53349566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5335ed502f03SStefano Zampini } else { 5336ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5337ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5338ed502f03SStefano Zampini Mat_SeqAIJ *c; 5339ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5340ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5341ed502f03SStefano Zampini PetscInt *ci, *cj; 5342ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5343ed502f03SStefano Zampini PetscScalar *ca; 5344ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5345ed502f03SStefano Zampini 53469566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53479566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5350ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5351ed502f03SStefano Zampini PetscInt k; 53529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5355ed502f03SStefano Zampini ci[0] = 0; 5356ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5357ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5358ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5359ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5360ed502f03SStefano Zampini /* diagonal portion of A */ 5361ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5362ed502f03SStefano Zampini cj[k] = *aj++; 5363ed502f03SStefano Zampini ca[k] = *aa++; 5364ed502f03SStefano Zampini } 5365ed502f03SStefano Zampini /* off-diagonal portion of A */ 5366ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5367ed502f03SStefano Zampini cj[k] = dn + *bj++; 5368ed502f03SStefano Zampini ca[k] = *ba++; 5369ed502f03SStefano Zampini } 5370ed502f03SStefano Zampini } 5371ed502f03SStefano Zampini /* put together the new matrix */ 53729566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5373ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5374ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5375ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5376ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5377ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5378ed502f03SStefano Zampini c->nonew = 0; 53799566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5380ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5382ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5383ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5384ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5385ed502f03SStefano Zampini /* diagonal portion of A */ 5386ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5387ed502f03SStefano Zampini /* off-diagonal portion of A */ 5388ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5389ed502f03SStefano Zampini } 53909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5394ed502f03SStefano Zampini if (glob) { 5395ed502f03SStefano Zampini PetscInt cst, *gidx; 5396ed502f03SStefano Zampini 53979566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5399ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5400ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54019566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5402ed502f03SStefano Zampini } 5403ed502f03SStefano Zampini } 54049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5406ed502f03SStefano Zampini } 5407ed502f03SStefano Zampini 540832fba14fSHong Zhang /*@C 540911a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541032fba14fSHong Zhang 541132fba14fSHong Zhang Not Collective 541232fba14fSHong Zhang 541332fba14fSHong Zhang Input Parameters: 541432fba14fSHong Zhang + A - the matrix 541511a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 541620f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 541720f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 541832fba14fSHong Zhang 541932fba14fSHong Zhang Output Parameter: 542032fba14fSHong Zhang . A_loc - the local sequential matrix generated 542132fba14fSHong Zhang 542232fba14fSHong Zhang Level: developer 542332fba14fSHong Zhang 54241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 542532fba14fSHong Zhang @*/ 5426d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5427d71ae5a4SJacob Faibussowitsch { 542832fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 542932fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543032fba14fSHong Zhang IS isrowa, iscola; 543132fba14fSHong Zhang Mat *aloc; 54324a2b5492SBarry Smith PetscBool match; 543332fba14fSHong Zhang 543432fba14fSHong Zhang PetscFunctionBegin; 54359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 543628b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 543832fba14fSHong Zhang if (!row) { 54399371c9d4SSatish Balay start = A->rmap->rstart; 54409371c9d4SSatish Balay end = A->rmap->rend; 54419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544232fba14fSHong Zhang } else { 544332fba14fSHong Zhang isrowa = *row; 544432fba14fSHong Zhang } 544532fba14fSHong Zhang if (!col) { 5446d0f46423SBarry Smith start = A->cmap->rstart; 544732fba14fSHong Zhang cmap = a->garray; 5448d0f46423SBarry Smith nzA = a->A->cmap->n; 5449d0f46423SBarry Smith nzB = a->B->cmap->n; 54509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545132fba14fSHong Zhang ncols = 0; 545232fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545332fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 545432fba14fSHong Zhang else break; 545532fba14fSHong Zhang } 545632fba14fSHong Zhang imark = i; 545732fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 545832fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546032fba14fSHong Zhang } else { 546132fba14fSHong Zhang iscola = *col; 546232fba14fSHong Zhang } 546332fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 546532fba14fSHong Zhang aloc[0] = *A_loc; 546632fba14fSHong Zhang } 54679566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5468109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54699566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5470109e0772SStefano Zampini } 547132fba14fSHong Zhang *A_loc = aloc[0]; 54729566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547348a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 547448a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 547732fba14fSHong Zhang } 547832fba14fSHong Zhang 54795c65b9ecSFande Kong /* 54805c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54815c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54825c65b9ecSFande Kong * on a global size. 54835c65b9ecSFande Kong * */ 5484ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5485d71ae5a4SJacob Faibussowitsch { 54865c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5487f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5488131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5489131c27b5Sprj- PetscMPIInt owner; 54905c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54915c65b9ecSFande Kong const PetscInt *lrowindices; 54925c65b9ecSFande Kong PetscSF sf, osf; 54935c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54945c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54955c65b9ecSFande Kong MPI_Comm comm; 54965c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5497fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54985c65b9ecSFande Kong 54995c65b9ecSFande Kong PetscFunctionBegin; 55009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55015c65b9ecSFande Kong /* plocalsize is the number of roots 55025c65b9ecSFande Kong * nrows is the number of leaves 55035c65b9ecSFande Kong * */ 55049566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55069566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55085c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55095c65b9ecSFande Kong /* Find a remote index and an owner for a row 55105c65b9ecSFande Kong * The row could be local or remote 55115c65b9ecSFande Kong * */ 551234bcad68SFande Kong owner = 0; 551334bcad68SFande Kong lidx = 0; 55149566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55155c65b9ecSFande Kong iremote[i].index = lidx; 55165c65b9ecSFande Kong iremote[i].rank = owner; 55175c65b9ecSFande Kong } 55185c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55199566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5520f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55215c65b9ecSFande Kong * offsets 55225c65b9ecSFande Kong * */ 55239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55259566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5526bc8e477aSFande Kong 55279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55289566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55305c65b9ecSFande Kong roffsets[0] = 0; 55315c65b9ecSFande Kong roffsets[1] = 0; 55325c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55334cf0e950SBarry Smith /* diagonal */ 55345c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55354cf0e950SBarry Smith /* off-diagonal */ 55365c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55375c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55385c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55395c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55405c65b9ecSFande Kong } 55419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55429566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55435c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55489566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55499566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55509566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55515c65b9ecSFande Kong dntotalcols = 0; 55525c65b9ecSFande Kong ontotalcols = 0; 5553bc8e477aSFande Kong ncol = 0; 55545c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55555c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5556bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55574cf0e950SBarry Smith /* diagonal */ 55585c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55594cf0e950SBarry Smith /* off-diagonal */ 55605c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55615c65b9ecSFande Kong } 55625c65b9ecSFande Kong /* We do not need to figure the right number of columns 55635c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55645c65b9ecSFande Kong * */ 55659566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55669566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55679566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55685c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55694cf0e950SBarry Smith /* diagonal */ 55709566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55714cf0e950SBarry Smith /* off-diagonal */ 55729566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55734cf0e950SBarry Smith /* diagonal */ 55749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55754cf0e950SBarry Smith /* off-diagonal */ 55769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55775c65b9ecSFande Kong dntotalcols = 0; 55785c65b9ecSFande Kong ontotalcols = 0; 55795c65b9ecSFande Kong ntotalcols = 0; 55805c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558134bcad68SFande Kong owner = 0; 55829566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55835c65b9ecSFande Kong /* Set iremote for diag matrix */ 55845c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55855c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55865c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55875c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55885c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55895c65b9ecSFande Kong } 55904cf0e950SBarry Smith /* off-diagonal */ 55915c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55925c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55935c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55945c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55955c65b9ecSFande Kong } 55965c65b9ecSFande Kong } 55979566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55989566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55999566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56009566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56015c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56025c65b9ecSFande Kong * Diag matrix 56035c65b9ecSFande Kong * */ 56049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56059566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56069566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56075c65b9ecSFande Kong 56089566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56094cf0e950SBarry Smith /* off-diagonal */ 56109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56119566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56129566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56154cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56169566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56195c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56205c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56225c65b9ecSFande Kong /* We want P_oth store global indices */ 56239566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56245c65b9ecSFande Kong /* Use memory scalable approach */ 56259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56269566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56295c65b9ecSFande Kong /* Convert back to local indices */ 56305c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56325c65b9ecSFande Kong nout = 0; 56339566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 563408401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56359566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56365c65b9ecSFande Kong /* Exchange values */ 56379566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56415c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56425c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56455c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56479566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56489566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56515c65b9ecSFande Kong } 56525c65b9ecSFande Kong 56535c65b9ecSFande Kong /* 56545c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56555c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56565c65b9ecSFande Kong * */ 5657d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5658d71ae5a4SJacob Faibussowitsch { 56595c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5660bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5661bc8e477aSFande Kong IS rows, map; 5662bc8e477aSFande Kong PetscHMapI hamp; 5663bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56645c65b9ecSFande Kong MPI_Comm comm; 56655c65b9ecSFande Kong PetscSF sf, osf; 5666bc8e477aSFande Kong PetscBool has; 56675c65b9ecSFande Kong 56685c65b9ecSFande Kong PetscFunctionBegin; 56699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56709566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56715c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56725c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56735c65b9ecSFande Kong * */ 56745c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56755c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5676eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5678bc8e477aSFande Kong count = 0; 5679bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5680bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5681bc8e477aSFande Kong key = a->garray[i] / dof; 56829566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5683bc8e477aSFande Kong if (!has) { 5684bc8e477aSFande Kong mapping[i] = count; 56859566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5686bc8e477aSFande Kong } else { 5687bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5688bc8e477aSFande Kong mapping[i] = count - 1; 56895c65b9ecSFande Kong } 5690bc8e477aSFande Kong } 56919566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56929566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5693eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56955c65b9ecSFande Kong off = 0; 56969566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56979566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56989566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56999566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57005c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57019566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57029566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57039566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57065c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57075c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 570835cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5709fff043a9SJunchao Zhang */ 5710fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5711fff043a9SJunchao Zhang 57129566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57139566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 571408401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57155c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57165c65b9ecSFande Kong /* Update values in place */ 57179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57256718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57285c65b9ecSFande Kong } 57295c65b9ecSFande Kong 573025616d81SHong Zhang /*@C 573120f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573225616d81SHong Zhang 5733c3339decSBarry Smith Collective 573425616d81SHong Zhang 573525616d81SHong Zhang Input Parameters: 573611a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 573711a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 573811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 573925616d81SHong Zhang 5740f1a722f8SMatthew G. Knepley Output Parameters: 574127430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574227430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5743f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 574425616d81SHong Zhang 574525616d81SHong Zhang Level: developer 574625616d81SHong Zhang 574720f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 574825616d81SHong Zhang @*/ 5749d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5750d71ae5a4SJacob Faibussowitsch { 5751899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5752b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575325616d81SHong Zhang IS isrowb, iscolb; 57540298fd71SBarry Smith Mat *bseq = NULL; 575525616d81SHong Zhang 575625616d81SHong Zhang PetscFunctionBegin; 575720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 575820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57599566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576025616d81SHong Zhang 576125616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5762d0f46423SBarry Smith start = A->cmap->rstart; 576325616d81SHong Zhang cmap = a->garray; 5764d0f46423SBarry Smith nzA = a->A->cmap->n; 5765d0f46423SBarry Smith nzB = a->B->cmap->n; 57669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 576725616d81SHong Zhang ncols = 0; 57680390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 576925616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577025616d81SHong Zhang else break; 577125616d81SHong Zhang } 577225616d81SHong Zhang imark = i; 57730390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57740390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57769566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 577725616d81SHong Zhang } else { 577808401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57799371c9d4SSatish Balay isrowb = *rowb; 57809371c9d4SSatish Balay iscolb = *colb; 57819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578225616d81SHong Zhang bseq[0] = *B_seq; 578325616d81SHong Zhang } 57849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 578525616d81SHong Zhang *B_seq = bseq[0]; 57869566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 578725616d81SHong Zhang if (!rowb) { 57889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 578925616d81SHong Zhang } else { 579025616d81SHong Zhang *rowb = isrowb; 579125616d81SHong Zhang } 579225616d81SHong Zhang if (!colb) { 57939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 579425616d81SHong Zhang } else { 579525616d81SHong Zhang *colb = iscolb; 579625616d81SHong Zhang } 57979566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 579925616d81SHong Zhang } 5800429d309bSHong Zhang 5801f8487c73SHong Zhang /* 580227430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580301b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5804429d309bSHong Zhang 5805c3339decSBarry Smith Collective 5806429d309bSHong Zhang 5807429d309bSHong Zhang Input Parameters: 580827430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 580927430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5810429d309bSHong Zhang 5811429d309bSHong Zhang Output Parameter: 58120298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58130298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58140298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5815598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5816429d309bSHong Zhang 581711a5261eSBarry Smith Developer Note: 581811a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58196eb45d04SBarry Smith for this matrix. This is not desirable.. 58206eb45d04SBarry Smith 5821429d309bSHong Zhang Level: developer 5822429d309bSHong Zhang 5823f8487c73SHong Zhang */ 5824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5825d71ae5a4SJacob Faibussowitsch { 5826899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 582787025532SHong Zhang Mat_SeqAIJ *b_oth; 58284b8d542aSHong Zhang VecScatter ctx; 5829ce94432eSBarry Smith MPI_Comm comm; 58303515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58313515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5832277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5833f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5834277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5835ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5836ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5837429d309bSHong Zhang 5838429d309bSHong Zhang PetscFunctionBegin; 58399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5841a7c7454dSHong Zhang 584220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5846a6b2eed2SHong Zhang 5847ec07b8f8SHong Zhang if (size == 1) { 5848ec07b8f8SHong Zhang startsj_s = NULL; 5849ec07b8f8SHong Zhang bufa_ptr = NULL; 585052f7967eSHong Zhang *B_oth = NULL; 58513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5852ec07b8f8SHong Zhang } 5853ec07b8f8SHong Zhang 5854fa83eaafSHong Zhang ctx = a->Mvctx; 58554b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58564b8d542aSHong Zhang 58579566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58583515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58599566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58609566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5862ddea5d60SJunchao Zhang rwaits = reqs; 58638e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5864429d309bSHong Zhang 5865b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5866429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5867a6b2eed2SHong Zhang /* i-array */ 5868a6b2eed2SHong Zhang /* post receives */ 58699566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5870a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587174268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5872e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5874429d309bSHong Zhang } 5875a6b2eed2SHong Zhang 5876a6b2eed2SHong Zhang /* pack the outgoing message */ 58779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58782205254eSKarl Rupp 58792205254eSKarl Rupp sstartsj[0] = 0; 58802205254eSKarl Rupp rstartsj[0] = 0; 5881a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58823515ee7fSJunchao Zhang if (nsends) { 58833515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58853515ee7fSJunchao Zhang } 5886a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58873515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5888e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 588987025532SHong Zhang for (j = 0; j < nrows; j++) { 5890d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5891e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58929566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58932205254eSKarl Rupp 5894e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58952205254eSKarl Rupp 5896e42f35eeSHong Zhang len += ncols; 58979566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5898e42f35eeSHong Zhang } 5899a6b2eed2SHong Zhang k++; 5900429d309bSHong Zhang } 59019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59022205254eSKarl Rupp 5903dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5904429d309bSHong Zhang } 590587025532SHong Zhang /* recvs and sends of i-array are completed */ 59069566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59079566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5908e42f35eeSHong Zhang 5909a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5912a6b2eed2SHong Zhang 591387025532SHong Zhang /* create i-array of B_oth */ 59149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59152205254eSKarl Rupp 591687025532SHong Zhang b_othi[0] = 0; 5917a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5918a6b2eed2SHong Zhang k = 0; 5919a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59203515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59213515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592287025532SHong Zhang for (j = 0; j < nrows; j++) { 592387025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59249566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5925f91af8c7SBarry Smith k++; 5926a6b2eed2SHong Zhang } 5927dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5928a6b2eed2SHong Zhang } 59299566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5930a6b2eed2SHong Zhang 59316aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5934a6b2eed2SHong Zhang 593587025532SHong Zhang /* j-array */ 5936a6b2eed2SHong Zhang /* post receives of j-array */ 5937a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 593887025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5940a6b2eed2SHong Zhang } 5941e42f35eeSHong Zhang 5942e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59433515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5944a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5945e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5946a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 594787025532SHong Zhang for (j = 0; j < nrows; j++) { 5948d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5949e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59509566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5951ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5953e42f35eeSHong Zhang } 595487025532SHong Zhang } 59559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 595687025532SHong Zhang } 595787025532SHong Zhang 595887025532SHong Zhang /* recvs and sends of j-array are completed */ 59599566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596087025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5961b7f45c76SHong Zhang sstartsj = *startsj_s; 59621d79065fSBarry Smith rstartsj = *startsj_r; 596387025532SHong Zhang bufa = *bufa_ptr; 596487025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5966ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 596787025532SHong Zhang 596887025532SHong Zhang /* a-array */ 596987025532SHong Zhang /* post receives of a-array */ 597087025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597187025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597387025532SHong Zhang } 5974e42f35eeSHong Zhang 5975e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59763515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 597787025532SHong Zhang for (i = 0; i < nsends; i++) { 5978e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 597987025532SHong Zhang bufA = bufa + sstartsj[i]; 598087025532SHong Zhang for (j = 0; j < nrows; j++) { 5981d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5982e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59839566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5984ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59859566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5986e42f35eeSHong Zhang } 5987a6b2eed2SHong Zhang } 59889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5989a6b2eed2SHong Zhang } 599087025532SHong Zhang /* recvs and sends of a-array are completed */ 59919566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59929566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5993a6b2eed2SHong Zhang 599487025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5995a6b2eed2SHong Zhang /* put together the new matrix */ 59969566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5997a6b2eed2SHong Zhang 5998a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5999a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600087025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6001e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6002e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600387025532SHong Zhang b_oth->nonew = 0; 6004a6b2eed2SHong Zhang 60059566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6006b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60079566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60089566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6009dea91ad1SHong Zhang } else { 6010b7f45c76SHong Zhang *startsj_s = sstartsj; 60111d79065fSBarry Smith *startsj_r = rstartsj; 601287025532SHong Zhang *bufa_ptr = bufa; 601387025532SHong Zhang } 6014fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6016dea91ad1SHong Zhang } 60173515ee7fSJunchao Zhang 60189566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60199566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6022429d309bSHong Zhang } 6023ccd8e176SBarry Smith 6024cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6025cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6026ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60279779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6028a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6029191b95cbSRichard Tran Mills #endif 6030ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6031cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60325d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60345d7652ecSHong Zhang #endif 6035d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6036d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6037d24d4204SJose E. Roman #endif 603863c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 603963c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604063c07aadSStefano Zampini #endif 60413338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60423338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60433338378cSStefano Zampini #endif 6044d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6045d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6046d5e393b6SSuyash Tandon #endif 60473d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60483d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60493d0639e7SStefano Zampini #endif 6050d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60514222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60524222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605317667f90SBarry Smith 6054fc4dec0aSBarry Smith /* 6055fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6056fc4dec0aSBarry Smith 6057fc4dec0aSBarry Smith n p p 60582da392ccSBarry Smith [ ] [ ] [ ] 60592da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60602da392ccSBarry Smith [ ] [ ] [ ] 6061fc4dec0aSBarry Smith 6062fc4dec0aSBarry Smith */ 6063d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6064d71ae5a4SJacob Faibussowitsch { 6065fc4dec0aSBarry Smith Mat At, Bt, Ct; 6066fc4dec0aSBarry Smith 6067fc4dec0aSBarry Smith PetscFunctionBegin; 60689566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60699566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60709566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60719566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60729566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60737fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60749566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60759566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6077fc4dec0aSBarry Smith } 6078fc4dec0aSBarry Smith 6079d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6080d71ae5a4SJacob Faibussowitsch { 60816718818eSStefano Zampini PetscBool cisdense; 6082fc4dec0aSBarry Smith 6083fc4dec0aSBarry Smith PetscFunctionBegin; 608408401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6087d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 608848a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60899566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6090f75ecaa4SHong Zhang 60914222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6093fc4dec0aSBarry Smith } 6094fc4dec0aSBarry Smith 6095d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6096d71ae5a4SJacob Faibussowitsch { 60974222ddf1SHong Zhang Mat_Product *product = C->product; 60984222ddf1SHong Zhang Mat A = product->A, B = product->B; 6099fc4dec0aSBarry Smith 6100fc4dec0aSBarry Smith PetscFunctionBegin; 610120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61034222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61044222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6106fc4dec0aSBarry Smith } 6107fc4dec0aSBarry Smith 6108d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6109d71ae5a4SJacob Faibussowitsch { 61104222ddf1SHong Zhang Mat_Product *product = C->product; 61114222ddf1SHong Zhang 61124222ddf1SHong Zhang PetscFunctionBegin; 611348a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61154222ddf1SHong Zhang } 6116394ed5ebSJunchao Zhang 611727430b45SBarry Smith /* 611827430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6119394ed5ebSJunchao Zhang 6120394ed5ebSJunchao Zhang Input Parameters: 6121394ed5ebSJunchao Zhang 6122651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6123651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6124394ed5ebSJunchao Zhang 6125158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6126394ed5ebSJunchao Zhang 6127394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6128394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6129394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6130394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6131394ed5ebSJunchao Zhang 6132394ed5ebSJunchao Zhang Similar for Set2. 6133394ed5ebSJunchao Zhang 6134394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6135394ed5ebSJunchao Zhang 6136158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6137394ed5ebSJunchao Zhang 6138394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6139394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6140394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6141394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6142394ed5ebSJunchao Zhang */ 6143d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6144d71ae5a4SJacob Faibussowitsch { 6145394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6146394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6147394ed5ebSJunchao Zhang 6148394ed5ebSJunchao Zhang PetscFunctionBegin; 61499566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6150394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6151394ed5ebSJunchao Zhang i[0] = 0; 6152394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6153394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6154394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6155394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6156394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6157394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6158394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6159394ed5ebSJunchao Zhang j[t] = j1[b1]; 6160394ed5ebSJunchao Zhang imap1[t1] = t; 6161394ed5ebSJunchao Zhang imap2[t2] = t; 6162394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6163394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61649371c9d4SSatish Balay t1++; 61659371c9d4SSatish Balay t2++; 61669371c9d4SSatish Balay t++; 6167394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6168394ed5ebSJunchao Zhang j[t] = j1[b1]; 6169394ed5ebSJunchao Zhang imap1[t1] = t; 6170394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61719371c9d4SSatish Balay t1++; 61729371c9d4SSatish Balay t++; 6173394ed5ebSJunchao Zhang } else { 6174394ed5ebSJunchao Zhang j[t] = j2[b2]; 6175394ed5ebSJunchao Zhang imap2[t2] = t; 6176394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61779371c9d4SSatish Balay t2++; 61789371c9d4SSatish Balay t++; 6179394ed5ebSJunchao Zhang } 6180394ed5ebSJunchao Zhang } 6181394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6182394ed5ebSJunchao Zhang while (b1 < e1) { 6183394ed5ebSJunchao Zhang j[t] = j1[b1]; 6184394ed5ebSJunchao Zhang imap1[t1] = t; 6185394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61869371c9d4SSatish Balay t1++; 61879371c9d4SSatish Balay t++; 6188394ed5ebSJunchao Zhang } 6189394ed5ebSJunchao Zhang while (b2 < e2) { 6190394ed5ebSJunchao Zhang j[t] = j2[b2]; 6191394ed5ebSJunchao Zhang imap2[t2] = t; 6192394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61939371c9d4SSatish Balay t2++; 61949371c9d4SSatish Balay t++; 6195394ed5ebSJunchao Zhang } 6196394ed5ebSJunchao Zhang i[r + 1] = t; 6197394ed5ebSJunchao Zhang } 61983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6199394ed5ebSJunchao Zhang } 6200394ed5ebSJunchao Zhang 620127430b45SBarry Smith /* 620227430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6203394ed5ebSJunchao Zhang 6204394ed5ebSJunchao Zhang Input Parameters: 6205394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6206394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6207394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6208394ed5ebSJunchao Zhang 6209394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6210394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6211394ed5ebSJunchao Zhang 6212394ed5ebSJunchao Zhang Output Parameters: 6213394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6214394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6215394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6216394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6217394ed5ebSJunchao Zhang 6218394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6219158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6220158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6221394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6222394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6223394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6224394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6225394ed5ebSJunchao Zhang 6226394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6227394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6228394ed5ebSJunchao Zhang 6229394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6230394ed5ebSJunchao Zhang 6231158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6232394ed5ebSJunchao Zhang */ 6233d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6234d71ae5a4SJacob Faibussowitsch { 6235394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6236394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6237394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6238394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6239394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6240394ed5ebSJunchao Zhang 6241394ed5ebSJunchao Zhang PetscFunctionBegin; 62429566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62439566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6244394ed5ebSJunchao Zhang m = rend - rstart; 6245394ed5ebSJunchao Zhang 6246651b1cf9SStefano Zampini /* Skip negative rows */ 6247651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62489371c9d4SSatish Balay if (i[k] >= 0) break; 6249394ed5ebSJunchao Zhang 6250394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6251394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6252394ed5ebSJunchao Zhang */ 6253394ed5ebSJunchao Zhang while (k < n) { 6254394ed5ebSJunchao Zhang row = i[k]; 6255394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62569371c9d4SSatish Balay for (s = k; s < n; s++) 62579371c9d4SSatish Balay if (i[s] != row) break; 6258651b1cf9SStefano Zampini 6259651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6260394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6261651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 626254c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6263394ed5ebSJunchao Zhang } 62649566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6265158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6266394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6267394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6268394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6269394ed5ebSJunchao Zhang 6270394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6271394ed5ebSJunchao Zhang Atot += mid - k; 6272394ed5ebSJunchao Zhang Btot += s - mid; 6273394ed5ebSJunchao Zhang 6274651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6275394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6276394ed5ebSJunchao Zhang col = j[p]; 62779371c9d4SSatish Balay do { 6278651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62799371c9d4SSatish Balay p++; 6280651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6281394ed5ebSJunchao Zhang Annz++; 6282394ed5ebSJunchao Zhang } 6283394ed5ebSJunchao Zhang 6284651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6285394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6286394ed5ebSJunchao Zhang col = j[p]; 6287d71ae5a4SJacob Faibussowitsch do { 6288d71ae5a4SJacob Faibussowitsch p++; 6289d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6290394ed5ebSJunchao Zhang Bnnz++; 6291394ed5ebSJunchao Zhang } 6292394ed5ebSJunchao Zhang k = s; 6293394ed5ebSJunchao Zhang } 6294394ed5ebSJunchao Zhang 6295394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6296158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6297158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6298158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6299158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6300394ed5ebSJunchao Zhang 63016aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6302394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6303394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6304394ed5ebSJunchao Zhang k = rowBegin[r]; 6305394ed5ebSJunchao Zhang mid = rowMid[r]; 6306394ed5ebSJunchao Zhang s = rowEnd[r]; 63078e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63088e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6309394ed5ebSJunchao Zhang Atot += mid - k; 6310394ed5ebSJunchao Zhang Btot += s - mid; 6311394ed5ebSJunchao Zhang 6312394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6313394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6314394ed5ebSJunchao Zhang col = j[p]; 6315394ed5ebSJunchao Zhang q = p; 6316d71ae5a4SJacob Faibussowitsch do { 6317d71ae5a4SJacob Faibussowitsch p++; 6318d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6319394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6320394ed5ebSJunchao Zhang Annz++; 6321394ed5ebSJunchao Zhang } 6322394ed5ebSJunchao Zhang 6323394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6324394ed5ebSJunchao Zhang col = j[p]; 6325394ed5ebSJunchao Zhang q = p; 6326d71ae5a4SJacob Faibussowitsch do { 6327d71ae5a4SJacob Faibussowitsch p++; 6328d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6329394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6330394ed5ebSJunchao Zhang Bnnz++; 6331394ed5ebSJunchao Zhang } 6332394ed5ebSJunchao Zhang } 6333394ed5ebSJunchao Zhang /* Output */ 6334394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6335394ed5ebSJunchao Zhang *Annz_ = Annz; 6336394ed5ebSJunchao Zhang *Atot_ = Atot; 6337394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6338394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6339394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6340394ed5ebSJunchao Zhang *Btot_ = Btot; 6341394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6343394ed5ebSJunchao Zhang } 6344394ed5ebSJunchao Zhang 634527430b45SBarry Smith /* 634627430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6347158ec288SJunchao Zhang 6348158ec288SJunchao Zhang Input Parameters: 6349158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6350158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6351158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6352651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6353158ec288SJunchao Zhang 6354158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6355158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6356158ec288SJunchao Zhang 6357158ec288SJunchao Zhang Example: 6358158ec288SJunchao Zhang nnz1 = 4 6359158ec288SJunchao Zhang nnz = 6 6360158ec288SJunchao Zhang imap = [1,3,4,5] 6361158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6362158ec288SJunchao Zhang then, 6363158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6364158ec288SJunchao Zhang */ 6365d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6366d71ae5a4SJacob Faibussowitsch { 6367158ec288SJunchao Zhang PetscCount k, p; 6368158ec288SJunchao Zhang 6369158ec288SJunchao Zhang PetscFunctionBegin; 6370158ec288SJunchao Zhang jmap_new[0] = 0; 6371158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6372158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6373158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6374158ec288SJunchao Zhang } 6375158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6377158ec288SJunchao Zhang } 6378158ec288SJunchao Zhang 63792c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63802c4ab24aSJunchao Zhang { 63812c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63822c4ab24aSJunchao Zhang 63832c4ab24aSJunchao Zhang PetscFunctionBegin; 63842c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63852c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63862c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63872c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63882c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63892c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63902c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63982c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63992c4ab24aSJunchao Zhang } 64002c4ab24aSJunchao Zhang 6401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6402d71ae5a4SJacob Faibussowitsch { 6403394ed5ebSJunchao Zhang MPI_Comm comm; 6404394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6405394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6406394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6407394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64082c4ab24aSJunchao Zhang PetscContainer container; 64092c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6410394ed5ebSJunchao Zhang 6411394ed5ebSJunchao Zhang PetscFunctionBegin; 64129566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6414cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6415eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6416cbc6b225SStefano Zampini #else 64179566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6418cbc6b225SStefano Zampini #endif 64199566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6420cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6421cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6422cbc6b225SStefano Zampini 64239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64279566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64289566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64299566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64309566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64319566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6432394ed5ebSJunchao Zhang 64336aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6434394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6435394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6436e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6437e8729f6fSJunchao Zhang 6438e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6439394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6440394ed5ebSJunchao Zhang 6441394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6442394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6443394ed5ebSJunchao Zhang will have positive row indices. 6444394ed5ebSJunchao Zhang */ 6445394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6446394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6447394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6448f7d195e4SLawrence Mitchell else { 6449f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6450f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6451f7d195e4SLawrence Mitchell } 6452394ed5ebSJunchao Zhang } 6453394ed5ebSJunchao Zhang 6454da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64559566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6456651b1cf9SStefano Zampini 6457651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6458651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64599371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6460651b1cf9SStefano Zampini PetscInt i1start = k; 6461651b1cf9SStefano Zampini 64629566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6463394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6464394ed5ebSJunchao Zhang 6465394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6466394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6467394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6468394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6469394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6470394ed5ebSJunchao Zhang const PetscInt *ranges; 6471394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6472394ed5ebSJunchao Zhang 64739566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6475394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6476394ed5ebSJunchao Zhang PetscMPIInt owner; 6477394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6478cbc6b225SStefano Zampini 6479394ed5ebSJunchao Zhang /* Locate a row range */ 6480394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64819566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6482394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6483394ed5ebSJunchao Zhang 6484394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64859566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6486394ed5ebSJunchao Zhang 6487394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6488394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6489394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6490394ed5ebSJunchao Zhang PetscInt *nentries2; 6491394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6492cbc6b225SStefano Zampini 64939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64969566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6497394ed5ebSJunchao Zhang sendto = sendto2; 6498394ed5ebSJunchao Zhang nentries = nentries2; 6499394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6500394ed5ebSJunchao Zhang } 6501394ed5ebSJunchao Zhang sendto[nsend] = owner; 6502394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65039566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6504394ed5ebSJunchao Zhang nsend++; 6505394ed5ebSJunchao Zhang k = p; 6506394ed5ebSJunchao Zhang } 6507394ed5ebSJunchao Zhang 6508394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6509394ed5ebSJunchao Zhang PetscSF sf1; 6510394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6511394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6512394ed5ebSJunchao Zhang PetscInt *offsets; 6513394ed5ebSJunchao Zhang PetscSFNode *iremote; 6514394ed5ebSJunchao Zhang 65159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6518394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6519394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6520394ed5ebSJunchao Zhang iremote[k].index = 0; 6521394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652254c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6523394ed5ebSJunchao Zhang } 65249566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65259566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65269566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6528e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6529394ed5ebSJunchao Zhang 6530394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6531394ed5ebSJunchao Zhang PetscSF sf2; 6532394ed5ebSJunchao Zhang nroots = nroots2; 6533394ed5ebSJunchao Zhang nleaves = nleaves2; 65349566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65359566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6537394ed5ebSJunchao Zhang p = 0; 6538394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 653954c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6540394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6541394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6542394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6543394ed5ebSJunchao Zhang } 6544394ed5ebSJunchao Zhang } 65459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6546394ed5ebSJunchao Zhang 6547394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6548394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6549394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65509566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6551834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6552834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6553834dcf29SHansol Suh PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */ 6554834dcf29SHansol Suh PetscInt *j1prem = j1 ? j1 + rem : NULL; 6555834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6556834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6557834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6558834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6559394ed5ebSJunchao Zhang 65609566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65619566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6562394ed5ebSJunchao Zhang 6563394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6564394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65659566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6566394ed5ebSJunchao Zhang 6567651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6568651b1cf9SStefano Zampini PetscCount *Cperm1; 6569834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6570834dcf29SHansol Suh PetscCount *perm1prem = perm1 ? perm1 + rem : NULL; 6571651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6572834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6573651b1cf9SStefano Zampini 6574651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6575651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6576651b1cf9SStefano Zampini PetscBool hypre; 6577651b1cf9SStefano Zampini const char *name; 6578651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6579651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6580651b1cf9SStefano Zampini if (hypre) { 6581651b1cf9SStefano Zampini PetscInt *minj; 6582651b1cf9SStefano Zampini PetscBT hasdiag; 6583651b1cf9SStefano Zampini 6584651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6585651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6586651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6587651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6588651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6589651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6590651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6591651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6592651b1cf9SStefano Zampini } 6593651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6594651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6595651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6596651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6597651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6598651b1cf9SStefano Zampini } 6599651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6600651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6601651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6602651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6603651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6604651b1cf9SStefano Zampini } 6605651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6606651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6607651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6608651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6609651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6610651b1cf9SStefano Zampini } 6611651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6612651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6613651b1cf9SStefano Zampini } 6614651b1cf9SStefano Zampini 6615651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6616651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6617651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6618651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6619394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6620394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6621394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6622394ed5ebSJunchao Zhang 6623651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66249566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6625651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66269566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6627394ed5ebSJunchao Zhang 6628394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6629394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6630394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6631394ed5ebSJunchao Zhang 66329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6636394ed5ebSJunchao Zhang 6637394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6638158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6639158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6640158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6641158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6642394ed5ebSJunchao Zhang 66439566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66449566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6645158ec288SJunchao Zhang 6646158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6647158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6648158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6649158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6650158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6651158ec288SJunchao Zhang 6652158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6653158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6654158ec288SJunchao Zhang 6655158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6656158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6657158ec288SJunchao Zhang 6658158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6659158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6660158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6661158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66629566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66639566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6664e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66659566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6666394ed5ebSJunchao Zhang 6667158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6668158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6669158ec288SJunchao Zhang 6670394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6671394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6672394ed5ebSJunchao Zhang PetscInt *Aj_new; 66739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66749566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66759566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6676394ed5ebSJunchao Zhang Aj = Aj_new; 6677394ed5ebSJunchao Zhang } 6678394ed5ebSJunchao Zhang 6679394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6680394ed5ebSJunchao Zhang PetscInt *Bj_new; 66819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66839566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6684394ed5ebSJunchao Zhang Bj = Bj_new; 6685394ed5ebSJunchao Zhang } 6686394ed5ebSJunchao Zhang 6687cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6688394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6689cbc6b225SStefano Zampini MatType rtype; 6690394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6691cf8ba265SJunchao Zhang PetscObjectState state; 66929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6694394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66959371c9d4SSatish Balay if (cstart) { 66969371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66979371c9d4SSatish Balay } 6698c508b908SBarry Smith 66999566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6700c508b908SBarry Smith 6701c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6702c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67039566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67040da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6705c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6706c508b908SBarry Smith 6707c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6708c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67099566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67100da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6711c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6712c508b908SBarry Smith 67139566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67145bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6715cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6716cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6717cbc6b225SStefano Zampini 6718394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6719394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6720394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6721394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6722394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6723394ed5ebSJunchao Zhang 6724cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67259566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67269566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67289566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6729cbc6b225SStefano Zampini 67302c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67312c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67322c4ab24aSJunchao Zhang coo->n = coo_n; 67332c4ab24aSJunchao Zhang coo->sf = sf2; 67342c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67352c4ab24aSJunchao Zhang coo->recvlen = nroots; 67362c4ab24aSJunchao Zhang coo->Annz = Annz; 67372c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67382c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67392c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67402c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67412c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67422c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67432c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67442c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67452c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67462c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67472c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67482c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67492c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67502c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67512c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67522c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67532c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67542c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67552c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67562c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67572c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67582c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67592c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67602c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67612c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6763394ed5ebSJunchao Zhang } 6764394ed5ebSJunchao Zhang 6765d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6766d71ae5a4SJacob Faibussowitsch { 6767394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6768394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6769394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67702c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67712c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67722c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67732c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67742c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67752c4ab24aSJunchao Zhang PetscContainer container; 67762c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6777394ed5ebSJunchao Zhang 6778394ed5ebSJunchao Zhang PetscFunctionBegin; 67792c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67802c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67812c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67822c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67832c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67842c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67852c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67862c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67872c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67882c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67892c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67902c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67912c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67922c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67932c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67942c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67952c4ab24aSJunchao Zhang 67969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6798394ed5ebSJunchao Zhang 6799394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68002c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6801394ed5ebSJunchao Zhang 6802394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68032c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6804394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68052c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6806da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6807158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6808158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6809394ed5ebSJunchao Zhang } 68102c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6811158ec288SJunchao Zhang PetscScalar sum = 0.0; 6812158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6813158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6814394ed5ebSJunchao Zhang } 68152c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6816394ed5ebSJunchao Zhang 6817394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68182c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6819394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6820394ed5ebSJunchao Zhang } 68212c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6822394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6823394ed5ebSJunchao Zhang } 68249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6827394ed5ebSJunchao Zhang } 6828394ed5ebSJunchao Zhang 6829ccd8e176SBarry Smith /*MC 6830ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6831ccd8e176SBarry Smith 6832ccd8e176SBarry Smith Options Database Keys: 683311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6834ccd8e176SBarry Smith 6835ccd8e176SBarry Smith Level: beginner 68360cd7f59aSBarry Smith 68370cd7f59aSBarry Smith Notes: 68382ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68390cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68400cd7f59aSBarry Smith in the matrix 68410cd7f59aSBarry Smith 684211a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 684311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6844ccd8e176SBarry Smith 68451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6846ccd8e176SBarry Smith M*/ 6847d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6848d71ae5a4SJacob Faibussowitsch { 6849ccd8e176SBarry Smith Mat_MPIAIJ *b; 6850ccd8e176SBarry Smith PetscMPIInt size; 6851ccd8e176SBarry Smith 6852ccd8e176SBarry Smith PetscFunctionBegin; 68539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68542205254eSKarl Rupp 68554dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6856ccd8e176SBarry Smith B->data = (void *)b; 6857aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6858ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6859ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6860ccd8e176SBarry Smith b->size = size; 68612205254eSKarl Rupp 68629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6863ccd8e176SBarry Smith 6864ccd8e176SBarry Smith /* build cache for off array entries formed */ 68659566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68662205254eSKarl Rupp 6867ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6868f4259b30SLisandro Dalcin b->colmap = NULL; 6869f4259b30SLisandro Dalcin b->garray = NULL; 6870ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6871ccd8e176SBarry Smith 6872ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68730298fd71SBarry Smith b->lvec = NULL; 68740298fd71SBarry Smith b->Mvctx = NULL; 6875ccd8e176SBarry Smith 6876ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6877f4259b30SLisandro Dalcin b->rowindices = NULL; 6878f4259b30SLisandro Dalcin b->rowvalues = NULL; 6879ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6880ccd8e176SBarry Smith 6881f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68820298fd71SBarry Smith b->spptr = NULL; 6883f60c3dc2SHong Zhang 68849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68943d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68963d0639e7SStefano Zampini #endif 6897d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6898d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6899d5e393b6SSuyash Tandon #endif 69003d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69023d0639e7SStefano Zampini #endif 69039779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6905191b95cbSRichard Tran Mills #endif 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69105d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69125d7652ecSHong Zhang #endif 6913d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6915d24d4204SJose E. Roman #endif 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69183dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69213dad0653Sstefano_zampini #endif 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6928ccd8e176SBarry Smith } 692981824310SBarry Smith 6930cce60c4dSBarry Smith /*@C 693111a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 693203bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 693303bfb495SBarry Smith 6934d083f849SBarry Smith Collective 693503bfb495SBarry Smith 693603bfb495SBarry Smith Input Parameters: 693703bfb495SBarry Smith + comm - MPI communicator 693811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 693903bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6940d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69412ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69422ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69432ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6944483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 694504ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 694603bfb495SBarry Smith . a - matrix values 6947483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69482ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 694903bfb495SBarry Smith - oa - matrix values 695003bfb495SBarry Smith 695103bfb495SBarry Smith Output Parameter: 695203bfb495SBarry Smith . mat - the matrix 695303bfb495SBarry Smith 695403bfb495SBarry Smith Level: advanced 695503bfb495SBarry Smith 695603bfb495SBarry Smith Notes: 69572ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user 6958292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 695903bfb495SBarry Smith 69602ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696103bfb495SBarry Smith 69622ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 696303bfb495SBarry Smith 69647b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69657b55108eSBarry Smith 6966dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6967dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6968dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6969dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697011a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6971dca341c0SJed Brown communication if it is known that only local entries will be set. 697203bfb495SBarry Smith 69731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6974db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69752b26979fSBarry Smith @*/ 6976d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6977d71ae5a4SJacob Faibussowitsch { 697803bfb495SBarry Smith Mat_MPIAIJ *maij; 697903bfb495SBarry Smith 698003bfb495SBarry Smith PetscFunctionBegin; 698108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6982aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6983aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69849566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69869566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 698703bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69882205254eSKarl Rupp 69898d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699003bfb495SBarry Smith 69919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 699303bfb495SBarry Smith 69949566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69959566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 699603bfb495SBarry Smith 69979566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70009566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70019566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700303bfb495SBarry Smith } 700403bfb495SBarry Smith 70054e84afc0SStefano Zampini typedef struct { 70064e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70074e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70084e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70094e84afc0SStefano Zampini 70104e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70114e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70124e84afc0SStefano Zampini PetscScalar *bufa; 70134e84afc0SStefano Zampini Mat P_oth; 70144e84afc0SStefano Zampini 70154e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7016ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70174e84afc0SStefano Zampini 7018ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70194e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70204e84afc0SStefano Zampini of the temporary storage */ 70214e84afc0SStefano Zampini PetscBool reusesym; 70224e84afc0SStefano Zampini 70234e84afc0SStefano Zampini /* support for COO values insertion */ 7024ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7025ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7026ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7027ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7028c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7029c215019aSStefano Zampini PetscMemType mtype; 70304e84afc0SStefano Zampini 70314e84afc0SStefano Zampini /* customization */ 70324e84afc0SStefano Zampini PetscBool abmerge; 7033abb89eb1SStefano Zampini PetscBool P_oth_bind; 70344e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70354e84afc0SStefano Zampini 7036ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7037d71ae5a4SJacob Faibussowitsch { 70384e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70394e84afc0SStefano Zampini PetscInt i; 70404e84afc0SStefano Zampini 70414e84afc0SStefano Zampini PetscFunctionBegin; 70429566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70439566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70449566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70459566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70479566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70489566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 704948a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70509566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70519566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70529566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70539566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70549566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70559566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70574e84afc0SStefano Zampini } 70584e84afc0SStefano Zampini 7059fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7060fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7061fff043a9SJunchao Zhang */ 7062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7063d71ae5a4SJacob Faibussowitsch { 7064c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7065c215019aSStefano Zampini 7066c215019aSStefano Zampini PetscFunctionBegin; 70679566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7068c215019aSStefano Zampini if (f) { 70699566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7070c215019aSStefano Zampini } else { 7071c215019aSStefano Zampini const PetscScalar *vv; 7072c215019aSStefano Zampini 70739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7074c215019aSStefano Zampini if (n && idx) { 7075c215019aSStefano Zampini PetscScalar *w = v; 7076c215019aSStefano Zampini const PetscInt *oi = idx; 7077c215019aSStefano Zampini PetscInt j; 7078c215019aSStefano Zampini 7079c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7080c215019aSStefano Zampini } else { 70819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7082c215019aSStefano Zampini } 70839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7084c215019aSStefano Zampini } 70853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7086c215019aSStefano Zampini } 7087c215019aSStefano Zampini 7088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7089d71ae5a4SJacob Faibussowitsch { 70904e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70914e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70924e84afc0SStefano Zampini 70934e84afc0SStefano Zampini PetscFunctionBegin; 70944e84afc0SStefano Zampini MatCheckProduct(C, 1); 709528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70964e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70974e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 709848a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 709948a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71004e84afc0SStefano Zampini } 71014e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7102abb89eb1SStefano Zampini 7103abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 710408401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71059566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7106abb89eb1SStefano Zampini } 71074e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71084e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 71094e84afc0SStefano Zampini 71104e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71114e84afc0SStefano Zampini if (noff) { 7112c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7113c215019aSStefano Zampini 71149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71164e84afc0SStefano Zampini n_o += noff; 71174e84afc0SStefano Zampini n_d += nown; 71184e84afc0SStefano Zampini } else { 7119c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7120c215019aSStefano Zampini 71219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71224e84afc0SStefano Zampini n_d += mm->nz; 71234e84afc0SStefano Zampini } 71244e84afc0SStefano Zampini } 7125c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71269566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71279566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71284e84afc0SStefano Zampini } 71299566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71314e84afc0SStefano Zampini } 71324e84afc0SStefano Zampini 71334e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71344e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7136d71ae5a4SJacob Faibussowitsch { 71374e84afc0SStefano Zampini Mat_Product *product = C->product; 7138ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71394e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71404e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71414e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71424e84afc0SStefano Zampini IS glob = NULL; 71434e84afc0SStefano Zampini const char *prefix; 71444e84afc0SStefano Zampini char pprefix[256]; 71454e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 714682a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 714782a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7148ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7149ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7150ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7151ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7152ddea5d60SJunchao Zhang 71534e84afc0SStefano Zampini MatProductType ptype; 7154d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71554e84afc0SStefano Zampini PetscMPIInt size; 71564e84afc0SStefano Zampini 71574e84afc0SStefano Zampini PetscFunctionBegin; 71584e84afc0SStefano Zampini MatCheckProduct(C, 1); 715928b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71604e84afc0SStefano Zampini ptype = product->type; 7161b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7162fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7163fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7164fa046f9fSJunchao Zhang } 71654e84afc0SStefano Zampini switch (ptype) { 71664e84afc0SStefano Zampini case MATPRODUCT_AB: 71674e84afc0SStefano Zampini A = product->A; 71684e84afc0SStefano Zampini P = product->B; 71694e84afc0SStefano Zampini m = A->rmap->n; 71704e84afc0SStefano Zampini n = P->cmap->n; 71714e84afc0SStefano Zampini M = A->rmap->N; 71724e84afc0SStefano Zampini N = P->cmap->N; 7173ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71744e84afc0SStefano Zampini break; 71754e84afc0SStefano Zampini case MATPRODUCT_AtB: 71764e84afc0SStefano Zampini P = product->A; 71774e84afc0SStefano Zampini A = product->B; 71784e84afc0SStefano Zampini m = P->cmap->n; 71794e84afc0SStefano Zampini n = A->cmap->n; 71804e84afc0SStefano Zampini M = P->cmap->N; 71814e84afc0SStefano Zampini N = A->cmap->N; 71824e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71834e84afc0SStefano Zampini break; 71844e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71854e84afc0SStefano Zampini A = product->A; 71864e84afc0SStefano Zampini P = product->B; 71874e84afc0SStefano Zampini m = P->cmap->n; 71884e84afc0SStefano Zampini n = P->cmap->n; 71894e84afc0SStefano Zampini M = P->cmap->N; 71904e84afc0SStefano Zampini N = P->cmap->N; 71914e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71924e84afc0SStefano Zampini break; 7193d71ae5a4SJacob Faibussowitsch default: 7194d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71954e84afc0SStefano Zampini } 71969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71974e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71984e84afc0SStefano Zampini 71994e84afc0SStefano Zampini /* defaults */ 72004e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72014e84afc0SStefano Zampini mp[i] = NULL; 72024e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72034e84afc0SStefano Zampini rmapt[i] = -1; 72044e84afc0SStefano Zampini cmapt[i] = -1; 72054e84afc0SStefano Zampini rmapa[i] = NULL; 72064e84afc0SStefano Zampini cmapa[i] = NULL; 72074e84afc0SStefano Zampini } 72084e84afc0SStefano Zampini 72094e84afc0SStefano Zampini /* customization */ 72109566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72114e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72124e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72134e84afc0SStefano Zampini if (product->api_user) { 7214d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72159566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72169566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7217d0609cedSBarry Smith PetscOptionsEnd(); 72184e84afc0SStefano Zampini } else { 7219d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7222d0609cedSBarry Smith PetscOptionsEnd(); 7223abb89eb1SStefano Zampini } 7224abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7225abb89eb1SStefano Zampini if (product->api_user) { 7226d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7228d0609cedSBarry Smith PetscOptionsEnd(); 7229abb89eb1SStefano Zampini } else { 7230d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7232d0609cedSBarry Smith PetscOptionsEnd(); 72334e84afc0SStefano Zampini } 72344e84afc0SStefano Zampini } 72354e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72364e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72409566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72419566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7242ddea5d60SJunchao Zhang 7243ddea5d60SJunchao Zhang cp = 0; 72444e84afc0SStefano Zampini switch (ptype) { 72454e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72469566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72474e84afc0SStefano Zampini 7248ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7249ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72504e84afc0SStefano Zampini /* P is product->B */ 72519566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72529566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72539566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72549566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72559566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72569566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72579566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72584e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72599566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72609566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72624e84afc0SStefano Zampini rmapt[cp] = 1; 72634e84afc0SStefano Zampini cmapt[cp] = 2; 72644e84afc0SStefano Zampini cmapa[cp] = globidx; 72654e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72664e84afc0SStefano Zampini cp++; 7267ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72689566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72709566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72729566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72739566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72744e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72769566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72774e84afc0SStefano Zampini rmapt[cp] = 1; 72784e84afc0SStefano Zampini cmapt[cp] = 1; 72794e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72804e84afc0SStefano Zampini cp++; 72819566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72829566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72839566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72849566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72859566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72869566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72874e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72899566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72904e84afc0SStefano Zampini rmapt[cp] = 1; 72914e84afc0SStefano Zampini cmapt[cp] = 2; 72924e84afc0SStefano Zampini cmapa[cp] = p->garray; 72934e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72944e84afc0SStefano Zampini cp++; 72954e84afc0SStefano Zampini } 7296ddea5d60SJunchao Zhang 7297ddea5d60SJunchao Zhang /* A_off * P_other */ 72984e84afc0SStefano Zampini if (mmdata->P_oth) { 72999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73009566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7301f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73029566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73039566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73049566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73059566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73069566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73079566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73089566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73094e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73109566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73119566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73124e84afc0SStefano Zampini rmapt[cp] = 1; 73134e84afc0SStefano Zampini cmapt[cp] = 2; 73144e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73154e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73164e84afc0SStefano Zampini cp++; 73174e84afc0SStefano Zampini } 73184e84afc0SStefano Zampini break; 7319ddea5d60SJunchao Zhang 73204e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73214e84afc0SStefano Zampini /* A is product->B */ 73229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7323ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73249566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73259566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73269566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73279566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73289566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73299566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73304e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73319566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73329566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73344e84afc0SStefano Zampini rmapt[cp] = 2; 73354e84afc0SStefano Zampini rmapa[cp] = globidx; 73364e84afc0SStefano Zampini cmapt[cp] = 2; 73374e84afc0SStefano Zampini cmapa[cp] = globidx; 73384e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73394e84afc0SStefano Zampini cp++; 73404e84afc0SStefano Zampini } else { 73419566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73429566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73439566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73449566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73459566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73469566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73474e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73489566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73499566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73514e84afc0SStefano Zampini rmapt[cp] = 1; 73524e84afc0SStefano Zampini cmapt[cp] = 2; 73534e84afc0SStefano Zampini cmapa[cp] = globidx; 73544e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73554e84afc0SStefano Zampini cp++; 73569566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73579566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73589566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73599566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73609566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73619566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73624e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73639566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73649566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73654e84afc0SStefano Zampini rmapt[cp] = 2; 73664e84afc0SStefano Zampini rmapa[cp] = p->garray; 73674e84afc0SStefano Zampini cmapt[cp] = 2; 73684e84afc0SStefano Zampini cmapa[cp] = globidx; 73694e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73704e84afc0SStefano Zampini cp++; 73714e84afc0SStefano Zampini } 73724e84afc0SStefano Zampini break; 73734e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73749566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73754e84afc0SStefano Zampini /* P is product->B */ 73769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73779566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73789566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73799566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73809566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73819566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73829566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73834e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73849566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73859566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73869566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73874e84afc0SStefano Zampini rmapt[cp] = 2; 73884e84afc0SStefano Zampini rmapa[cp] = globidx; 73894e84afc0SStefano Zampini cmapt[cp] = 2; 73904e84afc0SStefano Zampini cmapa[cp] = globidx; 73914e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73924e84afc0SStefano Zampini cp++; 73934e84afc0SStefano Zampini if (mmdata->P_oth) { 73949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73959566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7396f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73979566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73989566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73999566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74009566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74019566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74029566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74039566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74044e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74059566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74069566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74074e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74084e84afc0SStefano Zampini cp++; 74099566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74109566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74119566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74129566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74139566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74149566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74154e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74169566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74179566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74184e84afc0SStefano Zampini rmapt[cp] = 2; 74194e84afc0SStefano Zampini rmapa[cp] = globidx; 74204e84afc0SStefano Zampini cmapt[cp] = 2; 74214e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74224e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74234e84afc0SStefano Zampini cp++; 74244e84afc0SStefano Zampini } 74254e84afc0SStefano Zampini break; 7426d71ae5a4SJacob Faibussowitsch default: 7427d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74284e84afc0SStefano Zampini } 74294e84afc0SStefano Zampini /* sanity check */ 74309371c9d4SSatish Balay if (size > 1) 74319371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74324e84afc0SStefano Zampini 74339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7434ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7435ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7436ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7437ddea5d60SJunchao Zhang } 74384e84afc0SStefano Zampini mmdata->cp = cp; 74394e84afc0SStefano Zampini C->product->data = mmdata; 74404e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74414e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74424e84afc0SStefano Zampini 7443c215019aSStefano Zampini /* memory type */ 7444c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74459566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7446d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7448c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7449d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74503214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7451c215019aSStefano Zampini 74524e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7453ddea5d60SJunchao Zhang 7454ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7455ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7456ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7457ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7458ddea5d60SJunchao Zhang */ 74594e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74604e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74614e84afc0SStefano Zampini if (mptmp[cp]) continue; 7462ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74634e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74644e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74654e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74664e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74674e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74684e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74694e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74704e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7471ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7472ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74734e84afc0SStefano Zampini } 74744e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74754e84afc0SStefano Zampini } 7476ddea5d60SJunchao Zhang 7477ddea5d60SJunchao Zhang /* 7478ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7479ddea5d60SJunchao Zhang 7480ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7481ddea5d60SJunchao Zhang 7482d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7483ddea5d60SJunchao Zhang 7484ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7485ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7486ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7487ddea5d60SJunchao Zhang 7488ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7489da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7490ddea5d60SJunchao Zhang */ 74919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7493ddea5d60SJunchao Zhang 7494ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7495ddea5d60SJunchao Zhang if (hasoffproc) { 74964e84afc0SStefano Zampini PetscSF msf; 74974e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74984e84afc0SStefano Zampini 74999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7502ddea5d60SJunchao Zhang 75034e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75044e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75054e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75064e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7507ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75084e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75094e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75104e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75114e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75124e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75134e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75144e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75154e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75164e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75174e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75184e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75194e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75204e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7521ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75224e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75234e84afc0SStefano Zampini *coi++ = gr; 75244e84afc0SStefano Zampini *idxoff++ = j; 75254e84afc0SStefano Zampini } 75264e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75274e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75284e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75294e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75304e84afc0SStefano Zampini } else { /* offdiag */ 75314e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75324e84afc0SStefano Zampini } 75334e84afc0SStefano Zampini ncoo_o += nz; 7534ddea5d60SJunchao Zhang } else { /* this is a local row */ 75354e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75364e84afc0SStefano Zampini } 75374e84afc0SStefano Zampini } 75384e84afc0SStefano Zampini } 75394e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75404e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini 75439566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75459566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75469566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75474e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75489566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75499566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75509566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75519566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75529566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75539566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7554ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75559566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75564e84afc0SStefano Zampini coo_i = coo_i2; 75574e84afc0SStefano Zampini coo_j = coo_j2; 75584e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75594e84afc0SStefano Zampini ncoo = ncoo_d; 75609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7561c215019aSStefano Zampini 75629566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75639566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75649566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75654e84afc0SStefano Zampini } 7566c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75674e84afc0SStefano Zampini 7568ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75694e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75704e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75714e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75724e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75734e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75744e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75754e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75764e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75774e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75784e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75794e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75804e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75814e84afc0SStefano Zampini 75824e84afc0SStefano Zampini if (mptmp[cp]) continue; 7583ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7584ddea5d60SJunchao Zhang /* fill coo_i */ 75854e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75864e84afc0SStefano Zampini const PetscInt gr = i + rs; 75874e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75884e84afc0SStefano Zampini } 7589ddea5d60SJunchao Zhang /* fill coo_j */ 7590ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75919566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7592ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7593ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7594ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75954e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75964e84afc0SStefano Zampini } 75974e84afc0SStefano Zampini ncoo_d += mm->nz; 7598ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75994e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76004e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76014e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76024e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7603ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76044e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7605ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76064e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76074e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76084e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7609ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76104e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76114e84afc0SStefano Zampini } 76124e84afc0SStefano Zampini ncoo_d += nz; 76134e84afc0SStefano Zampini } 76144e84afc0SStefano Zampini } 76154e84afc0SStefano Zampini } 76164e84afc0SStefano Zampini } 761748a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 761948a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76209566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7621ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76229566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76234e84afc0SStefano Zampini 76244e84afc0SStefano Zampini /* preallocate with COO data */ 76259566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76269566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76284e84afc0SStefano Zampini } 76294e84afc0SStefano Zampini 7630d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7631d71ae5a4SJacob Faibussowitsch { 76324e84afc0SStefano Zampini Mat_Product *product = mat->product; 76334e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76344e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7635abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76364e84afc0SStefano Zampini #else 76374e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76384e84afc0SStefano Zampini #endif 76394e84afc0SStefano Zampini 76404e84afc0SStefano Zampini PetscFunctionBegin; 76414e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76424e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 764348a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 764465e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7645abb89eb1SStefano Zampini switch (product->type) { 7646abb89eb1SStefano Zampini case MATPRODUCT_AB: 7647abb89eb1SStefano Zampini if (product->api_user) { 7648d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76499566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7650d0609cedSBarry Smith PetscOptionsEnd(); 7651abb89eb1SStefano Zampini } else { 7652d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76539566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7654d0609cedSBarry Smith PetscOptionsEnd(); 7655abb89eb1SStefano Zampini } 7656abb89eb1SStefano Zampini break; 7657abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7658abb89eb1SStefano Zampini if (product->api_user) { 7659d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76609566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7661d0609cedSBarry Smith PetscOptionsEnd(); 7662abb89eb1SStefano Zampini } else { 7663d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76649566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7665d0609cedSBarry Smith PetscOptionsEnd(); 7666abb89eb1SStefano Zampini } 7667abb89eb1SStefano Zampini break; 7668abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7669abb89eb1SStefano Zampini if (product->api_user) { 7670d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7672d0609cedSBarry Smith PetscOptionsEnd(); 7673abb89eb1SStefano Zampini } else { 7674d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76759566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7676d0609cedSBarry Smith PetscOptionsEnd(); 7677abb89eb1SStefano Zampini } 7678abb89eb1SStefano Zampini break; 7679d71ae5a4SJacob Faibussowitsch default: 7680d71ae5a4SJacob Faibussowitsch break; 7681abb89eb1SStefano Zampini } 7682abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7683abb89eb1SStefano Zampini } 76844e84afc0SStefano Zampini #endif 76854e84afc0SStefano Zampini if (match) { 76864e84afc0SStefano Zampini switch (product->type) { 76874e84afc0SStefano Zampini case MATPRODUCT_AB: 76884e84afc0SStefano Zampini case MATPRODUCT_AtB: 7689d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7690d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7691d71ae5a4SJacob Faibussowitsch break; 7692d71ae5a4SJacob Faibussowitsch default: 7693d71ae5a4SJacob Faibussowitsch break; 76944e84afc0SStefano Zampini } 76954e84afc0SStefano Zampini } 76964e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76979566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769981824310SBarry Smith } 770098921bdaSJacob Faibussowitsch 770198921bdaSJacob Faibussowitsch /* 770272833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 770372833a62Smarkadams4 770472833a62Smarkadams4 n - the number of block indices in cc[] 770572833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 770672833a62Smarkadams4 */ 7707d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7708d71ae5a4SJacob Faibussowitsch { 770972833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 771072833a62Smarkadams4 const PetscInt *idx; 771172833a62Smarkadams4 771272833a62Smarkadams4 PetscFunctionBegin; 771372833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 771472833a62Smarkadams4 if (nidx) { 771572833a62Smarkadams4 cnt = 0; 771672833a62Smarkadams4 cc[cnt] = idx[0] / bs; 771772833a62Smarkadams4 for (j = 1; j < nidx; j++) { 771872833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 771972833a62Smarkadams4 } 772072833a62Smarkadams4 } 772172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 772272833a62Smarkadams4 *n = cnt + 1; 77233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772472833a62Smarkadams4 } 772572833a62Smarkadams4 772672833a62Smarkadams4 /* 772772833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 772872833a62Smarkadams4 772972833a62Smarkadams4 ncollapsed - the number of block indices 773072833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 773172833a62Smarkadams4 */ 7732d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7733d71ae5a4SJacob Faibussowitsch { 773472833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 773572833a62Smarkadams4 773672833a62Smarkadams4 PetscFunctionBegin; 773772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 773872833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 773972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 774072833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77419371c9d4SSatish Balay cprevtmp = cprev; 77429371c9d4SSatish Balay cprev = merged; 77439371c9d4SSatish Balay merged = cprevtmp; 774472833a62Smarkadams4 } 774572833a62Smarkadams4 *ncollapsed = nprev; 774672833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 774872833a62Smarkadams4 } 774972833a62Smarkadams4 77502d776b49SBarry Smith /* 775172833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 775272833a62Smarkadams4 775372833a62Smarkadams4 Input Parameter: 775472833a62Smarkadams4 . Amat - matrix 775572833a62Smarkadams4 - symmetrize - make the result symmetric 775672833a62Smarkadams4 + scale - scale with diagonal 775772833a62Smarkadams4 775872833a62Smarkadams4 Output Parameter: 775972833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 776072833a62Smarkadams4 776172833a62Smarkadams4 */ 7762e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7763d71ae5a4SJacob Faibussowitsch { 776472833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 776572833a62Smarkadams4 MPI_Comm comm; 776672833a62Smarkadams4 Mat Gmat; 776772833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 776872833a62Smarkadams4 Mat a, b, c; 776972833a62Smarkadams4 MatType jtype; 777072833a62Smarkadams4 777172833a62Smarkadams4 PetscFunctionBegin; 777272833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 777372833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 777472833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 777572833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 777672833a62Smarkadams4 nloc = (Iend - Istart) / bs; 777772833a62Smarkadams4 777872833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 777972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 778072833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 778172833a62Smarkadams4 778272833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 778372833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 778472833a62Smarkadams4 implementation */ 778572833a62Smarkadams4 if (bs > 1) { 778672833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 778772833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 778872833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 778972833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 779072833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 779172833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 779272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77932cf69117Smarkadams4 MatScalar *aa, val, *AA; 77942cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77959371c9d4SSatish Balay if (isseqaij) { 77969371c9d4SSatish Balay a = Amat; 77979371c9d4SSatish Balay b = NULL; 77989371c9d4SSatish Balay } else { 779972833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78009371c9d4SSatish Balay a = d->A; 78019371c9d4SSatish Balay b = d->B; 780272833a62Smarkadams4 } 780372833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 780472833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 780572833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78062cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 780759ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 780859ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 780959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 781059ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 781159ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 781272833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 781359ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 781459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 781559ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 781659ee9f9fSPierre Jolivet else { 781759ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 781859ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 781959ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 782072833a62Smarkadams4 } 782159ee9f9fSPierre Jolivet } 782259ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 782359ee9f9fSPierre Jolivet } 782459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 782572833a62Smarkadams4 if (!ok) { 782672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 782759ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 782872833a62Smarkadams4 goto old_bs; 782972833a62Smarkadams4 } 783072833a62Smarkadams4 } 783172833a62Smarkadams4 } 783272833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 783372833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 783472833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78352cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 783672833a62Smarkadams4 // diag 783772833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 783872833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 783972833a62Smarkadams4 ai = aseq->i; 784072833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 784172833a62Smarkadams4 aj = aseq->j + ai[brow]; 784272833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 784372833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 784472833a62Smarkadams4 val = 0; 7845e02fb3cdSMark Adams if (index_size == 0) { 784672833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 784772833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 784872833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 784972833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 785072833a62Smarkadams4 } 785172833a62Smarkadams4 } 7852e02fb3cdSMark Adams } else { // use (index,index) value if provided 7853e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7854e02fb3cdSMark Adams int ii = index[iii]; 7855e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7856e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7857e02fb3cdSMark Adams int jj = index[jjj]; 7858cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7859e02fb3cdSMark Adams } 7860e02fb3cdSMark Adams } 7861e02fb3cdSMark Adams } 786259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 786372833a62Smarkadams4 AA[k / bs] = val; 786472833a62Smarkadams4 } 786572833a62Smarkadams4 grow = Istart / bs + brow / bs; 786672833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES)); 786772833a62Smarkadams4 } 786872833a62Smarkadams4 // off-diag 786972833a62Smarkadams4 if (ismpiaij) { 787072833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 787172833a62Smarkadams4 const PetscScalar *vals; 787272833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 787372833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 787472833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 787572833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 787672833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 787759ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 787872833a62Smarkadams4 AA[k / bs] = 0; 787972833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 788072833a62Smarkadams4 } 788172833a62Smarkadams4 nc = ncols / bs; 788272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7883e02fb3cdSMark Adams if (index_size == 0) { 788472833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 788572833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 788672833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 788772833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 788859ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 788972833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 789072833a62Smarkadams4 } 789172833a62Smarkadams4 } 789272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 789372833a62Smarkadams4 } 7894e02fb3cdSMark Adams } else { // use (index,index) value if provided 7895e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7896e02fb3cdSMark Adams int ii = index[iii]; 7897e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7898e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7899e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7900e02fb3cdSMark Adams int jj = index[jjj]; 7901e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7902e02fb3cdSMark Adams } 7903e02fb3cdSMark Adams } 7904e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7905e02fb3cdSMark Adams } 7906e02fb3cdSMark Adams } 790772833a62Smarkadams4 grow = Istart / bs + brow / bs; 790872833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES)); 790972833a62Smarkadams4 } 791072833a62Smarkadams4 } 791172833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 791272833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79132cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 791472833a62Smarkadams4 } else { 791572833a62Smarkadams4 const PetscScalar *vals; 791672833a62Smarkadams4 const PetscInt *idx; 791772833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 791872833a62Smarkadams4 old_bs: 791972833a62Smarkadams4 /* 792072833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 792172833a62Smarkadams4 */ 792272833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 792372833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 792472833a62Smarkadams4 if (isseqaij) { 792572833a62Smarkadams4 PetscInt max_d_nnz; 792672833a62Smarkadams4 /* 792772833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 792872833a62Smarkadams4 */ 792972833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 793072833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793172833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793248a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793372833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793472833a62Smarkadams4 } else if (ismpiaij) { 793572833a62Smarkadams4 Mat Daij, Oaij; 793672833a62Smarkadams4 const PetscInt *garray; 793772833a62Smarkadams4 PetscInt max_d_nnz; 793872833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 793972833a62Smarkadams4 /* 794072833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 794172833a62Smarkadams4 */ 794272833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 794372833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794472833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 794548a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 794672833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 794772833a62Smarkadams4 /* 794872833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 794972833a62Smarkadams4 */ 795072833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 795172833a62Smarkadams4 o_nnz[jj] = 0; 795272833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 795372833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795472833a62Smarkadams4 o_nnz[jj] += ncols; 795572833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795672833a62Smarkadams4 } 795772833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 795872833a62Smarkadams4 } 795972833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 796072833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 796172833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 796272833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 796372833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 796472833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 796572833a62Smarkadams4 PetscInt dest_row = Ii / bs; 796672833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 796772833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 796872833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 796972833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 797072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 797172833a62Smarkadams4 } 797272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 797372833a62Smarkadams4 } 797472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 797572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 797672833a62Smarkadams4 } 797772833a62Smarkadams4 } else { 79782d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79792d776b49SBarry Smith else { 79802d776b49SBarry Smith Gmat = Amat; 79812d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79822d776b49SBarry Smith } 79839371c9d4SSatish Balay if (isseqaij) { 79849371c9d4SSatish Balay a = Gmat; 79859371c9d4SSatish Balay b = NULL; 79869371c9d4SSatish Balay } else { 798772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79889371c9d4SSatish Balay a = d->A; 79899371c9d4SSatish Balay b = d->B; 799072833a62Smarkadams4 } 79912d776b49SBarry Smith if (filter >= 0 || scale) { 79922d776b49SBarry Smith /* take absolute value of each entry */ 799372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 799472833a62Smarkadams4 MatInfo info; 799572833a62Smarkadams4 PetscScalar *avals; 799672833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 799772833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 799872833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 799972833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 800072833a62Smarkadams4 } 800172833a62Smarkadams4 } 80022d776b49SBarry Smith } 800372833a62Smarkadams4 if (symmetrize) { 8004b94d7dedSBarry Smith PetscBool isset, issym; 8005b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8006b94d7dedSBarry Smith if (!isset || !issym) { 800772833a62Smarkadams4 Mat matTrans; 800872833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80091fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 801072833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 801172833a62Smarkadams4 } 801272833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80132d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801472833a62Smarkadams4 if (scale) { 801572833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 801672833a62Smarkadams4 Vec diag; 801772833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 801872833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 801972833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 802072833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802172833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802272833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802372833a62Smarkadams4 } 802472833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80252d776b49SBarry Smith 80262d776b49SBarry Smith if (filter >= 0) { 80272ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80282ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80292d776b49SBarry Smith } 803072833a62Smarkadams4 *a_Gmat = Gmat; 80313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803272833a62Smarkadams4 } 803372833a62Smarkadams4 803472833a62Smarkadams4 /* 803598921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 803698921bdaSJacob Faibussowitsch */ 803798921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h> 803898921bdaSJacob Faibussowitsch 803998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80409566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80419566063dSJacob Faibussowitsch #undef PetscCall 80429371c9d4SSatish Balay #define PetscCall(...) \ 80439371c9d4SSatish Balay do { \ 80445f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804598921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 804698921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 804798921bdaSJacob Faibussowitsch return; \ 804898921bdaSJacob Faibussowitsch } \ 804998921bdaSJacob Faibussowitsch } while (0) 805098921bdaSJacob Faibussowitsch 805198921bdaSJacob Faibussowitsch #undef SETERRQ 80529371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80539371c9d4SSatish Balay do { \ 805498921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805598921bdaSJacob Faibussowitsch return; \ 805698921bdaSJacob Faibussowitsch } while (0) 805798921bdaSJacob Faibussowitsch 805898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 805998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 806098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 806198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 806298921bdaSJacob Faibussowitsch #else 806398921bdaSJacob Faibussowitsch #endif 8064d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8065d71ae5a4SJacob Faibussowitsch { 806698921bdaSJacob Faibussowitsch Mat mat = *mmat; 806798921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 806898921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 806998921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 807098921bdaSJacob Faibussowitsch PetscScalar value; 807198921bdaSJacob Faibussowitsch 807298921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 807398921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80745f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807598921bdaSJacob Faibussowitsch { 807698921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 807798921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 807898921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 807998921bdaSJacob Faibussowitsch 808098921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 808198921bdaSJacob Faibussowitsch Mat A = aij->A; 808298921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 808398921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 808498921bdaSJacob Faibussowitsch MatScalar *aa; 8085f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 808698921bdaSJacob Faibussowitsch Mat B = aij->B; 808798921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 808898921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 808998921bdaSJacob Faibussowitsch MatScalar *ba; 809098921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 809198921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 809298921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 809398921bdaSJacob Faibussowitsch 809498921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809598921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 809698921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 809798921bdaSJacob Faibussowitsch 809898921bdaSJacob Faibussowitsch PetscFunctionBegin; 80999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 810198921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 810298921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81036bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 810498921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810598921bdaSJacob Faibussowitsch row = im[i] - rstart; 810698921bdaSJacob Faibussowitsch lastcol1 = -1; 810798921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 810898921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 810998921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 811098921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 811198921bdaSJacob Faibussowitsch low1 = 0; 811298921bdaSJacob Faibussowitsch high1 = nrow1; 811398921bdaSJacob Faibussowitsch lastcol2 = -1; 811498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 811698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 811798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 811898921bdaSJacob Faibussowitsch low2 = 0; 811998921bdaSJacob Faibussowitsch high2 = nrow2; 812098921bdaSJacob Faibussowitsch 812198921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 812298921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 812398921bdaSJacob Faibussowitsch else value = v[i + j * m]; 812498921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812598921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 812698921bdaSJacob Faibussowitsch col = in[j] - cstart; 812798921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 812898921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 812998921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 813063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 813198921bdaSJacob Faibussowitsch } else { 813298921bdaSJacob Faibussowitsch if (mat->was_assembled) { 813348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 813498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8135eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 813698921bdaSJacob Faibussowitsch col--; 813798921bdaSJacob Faibussowitsch #else 813898921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 813998921bdaSJacob Faibussowitsch #endif 8140f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 81419566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 814298921bdaSJacob Faibussowitsch col = in[j]; 814398921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 814498921bdaSJacob Faibussowitsch B = aij->B; 814598921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81469371c9d4SSatish Balay bimax = b->imax; 81479371c9d4SSatish Balay bi = b->i; 81489371c9d4SSatish Balay bilen = b->ilen; 81499371c9d4SSatish Balay bj = b->j; 815098921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815198921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815298921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815398921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 815498921bdaSJacob Faibussowitsch low2 = 0; 815598921bdaSJacob Faibussowitsch high2 = nrow2; 815698921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 815798921bdaSJacob Faibussowitsch ba = b->a; 815898921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 815998921bdaSJacob Faibussowitsch } 816098921bdaSJacob Faibussowitsch } else col = in[j]; 816198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 816298921bdaSJacob Faibussowitsch } 816398921bdaSJacob Faibussowitsch } 816498921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816598921bdaSJacob Faibussowitsch if (roworiented) { 81669566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816798921bdaSJacob Faibussowitsch } else { 81689566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816998921bdaSJacob Faibussowitsch } 817098921bdaSJacob Faibussowitsch } 817198921bdaSJacob Faibussowitsch } 81729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 817498921bdaSJacob Faibussowitsch } 817598921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 817698921bdaSJacob Faibussowitsch } 817772833a62Smarkadams4 817898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 817998921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 818098921bdaSJacob Faibussowitsch * original definitions */ 81819566063dSJacob Faibussowitsch #undef PetscCall 818298921bdaSJacob Faibussowitsch #undef SETERRQ 8183