1cb512458SBarry Smith #ifndef lint 2*c0bbcb79SLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.87 1995/10/11 17:55:12 curfman Exp curfman $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 2078b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22416022c9SBarry Smith PetscZero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 33299609e3SLois Curfman McInnes if (aij->numtids == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 3548d91487SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 43dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 46dbb450caSBarry Smith int shift = C->indexshift; 478a729477SBarry Smith 4864119d58SLois Curfman McInnes if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) { 4948d91487SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 53bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 54bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 551eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 561eb62cbbSBarry Smith row = idxm[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 58bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 59bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 601eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 611eb62cbbSBarry Smith col = idxn[j] - cstart; 6278b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 631eb62cbbSBarry Smith } 641eb62cbbSBarry Smith else { 65d6dfbf8fSBarry Smith if (aij->assembled) { 66b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 67dbb450caSBarry Smith col = aij->colmap[idxn[j]] + shift; 68ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 692493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 702493cbb0SBarry Smith col = idxn[j]; 71d6dfbf8fSBarry Smith } 729e25ed09SBarry Smith } 739e25ed09SBarry Smith else col = idxn[j]; 7478b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith } 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith else { 79416022c9SBarry Smith ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr); 801eb62cbbSBarry Smith } 818a729477SBarry Smith } 828a729477SBarry Smith return 0; 838a729477SBarry Smith } 848a729477SBarry Smith 85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 868a729477SBarry Smith { 8744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 88d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 896abc6512SBarry Smith int numtids = aij->numtids, *owners = aij->rowners; 90416022c9SBarry Smith int mytid = aij->mytid,tag = mat->tag, *owner,*starts,count,ierr; 911eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 926abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 931eb62cbbSBarry Smith InsertMode addv; 941eb62cbbSBarry Smith Scalar *rvalues,*svalues; 951eb62cbbSBarry Smith 961eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 97d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 98dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 99bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1001eb62cbbSBarry Smith } 1011eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1021eb62cbbSBarry Smith 1031eb62cbbSBarry Smith /* first count number of contributors to each processor */ 10478b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 105416022c9SBarry Smith PetscZero(nprocs,2*numtids*sizeof(int)); procs = nprocs + numtids; 10678b31e54SBarry Smith owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1071eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1081eb62cbbSBarry Smith idx = aij->stash.idx[i]; 1091eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 1101eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1111eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1128a729477SBarry Smith } 1138a729477SBarry Smith } 1148a729477SBarry Smith } 1151eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 1161eb62cbbSBarry Smith 1171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 11878b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 119d65a2f8fSBarry Smith MPI_Allreduce(procs, work,numtids,MPI_INT,MPI_SUM,comm); 1201eb62cbbSBarry Smith nreceives = work[mytid]; 121d65a2f8fSBarry Smith MPI_Allreduce( nprocs, work,numtids,MPI_INT,MPI_MAX,comm); 1221eb62cbbSBarry Smith nmax = work[mytid]; 12378b31e54SBarry Smith PETSCFREE(work); 1241eb62cbbSBarry Smith 1251eb62cbbSBarry Smith /* post receives: 1261eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1271eb62cbbSBarry Smith (global index,value) we store the global index as a double 128d6dfbf8fSBarry Smith to simplify the message passing. 1291eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1301eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1311eb62cbbSBarry Smith this is a lot of wasted space. 1321eb62cbbSBarry Smith 1331eb62cbbSBarry Smith 1341eb62cbbSBarry Smith This could be done better. 1351eb62cbbSBarry Smith */ 13678b31e54SBarry Smith rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 13778b31e54SBarry Smith CHKPTRQ(rvalues); 13878b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request)); 13978b31e54SBarry Smith CHKPTRQ(recv_waits); 1401eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 141416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1421eb62cbbSBarry Smith comm,recv_waits+i); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith 1451eb62cbbSBarry Smith /* do sends: 1461eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1471eb62cbbSBarry Smith the ith processor 1481eb62cbbSBarry Smith */ 149416022c9SBarry Smith svalues = (Scalar *) PETSCMALLOC(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 15078b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 15178b31e54SBarry Smith CHKPTRQ(send_waits); 15278b31e54SBarry Smith starts = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(starts); 1531eb62cbbSBarry Smith starts[0] = 0; 1541eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1551eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1561eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1571eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1581eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1591eb62cbbSBarry Smith } 16078b31e54SBarry Smith PETSCFREE(owner); 1611eb62cbbSBarry Smith starts[0] = 0; 1621eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith count = 0; 1641eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 1651eb62cbbSBarry Smith if (procs[i]) { 166416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 1671eb62cbbSBarry Smith comm,send_waits+count++); 1681eb62cbbSBarry Smith } 1691eb62cbbSBarry Smith } 17078b31e54SBarry Smith PETSCFREE(starts); PETSCFREE(nprocs); 1711eb62cbbSBarry Smith 1721eb62cbbSBarry Smith /* Free cache space */ 17378b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1741eb62cbbSBarry Smith 1751eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1761eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1771eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1781eb62cbbSBarry Smith aij->rmax = nmax; 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith return 0; 1811eb62cbbSBarry Smith } 18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1831eb62cbbSBarry Smith 184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1851eb62cbbSBarry Smith { 18644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 187dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 1881eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 189416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 190416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 1911eb62cbbSBarry Smith Scalar *values,val; 1921eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 1931eb62cbbSBarry Smith 1941eb62cbbSBarry Smith /* wait on receives */ 1951eb62cbbSBarry Smith while (count) { 196d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 1971eb62cbbSBarry Smith /* unpack receives into our local space */ 198d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 199c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2001eb62cbbSBarry Smith n = n/3; 2011eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2021eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2031eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2041eb62cbbSBarry Smith val = values[3*i+2]; 2051eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2061eb62cbbSBarry Smith col -= aij->cstart; 2071eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2081eb62cbbSBarry Smith } 2091eb62cbbSBarry Smith else { 210d6dfbf8fSBarry Smith if (aij->assembled) { 211b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 212dbb450caSBarry Smith col = aij->colmap[col] + shift; 213ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2142493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2152493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 216d6dfbf8fSBarry Smith } 2179e25ed09SBarry Smith } 2181eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2191eb62cbbSBarry Smith } 2201eb62cbbSBarry Smith } 2211eb62cbbSBarry Smith count--; 2221eb62cbbSBarry Smith } 22378b31e54SBarry Smith PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues); 2241eb62cbbSBarry Smith 2251eb62cbbSBarry Smith /* wait on sends */ 2261eb62cbbSBarry Smith if (aij->nsends) { 22778b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC(aij->nsends*sizeof(MPI_Status)); 22878b31e54SBarry Smith CHKPTRQ(send_status); 2291eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 23078b31e54SBarry Smith PETSCFREE(send_status); 2311eb62cbbSBarry Smith } 23278b31e54SBarry Smith PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues); 2331eb62cbbSBarry Smith 23464119d58SLois Curfman McInnes aij->insertmode = NOT_SET_VALUES; 23578b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 23678b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2371eb62cbbSBarry Smith 2382493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2392493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 240416022c9SBarry Smith MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 2412493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2422493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2432493cbb0SBarry Smith } 2442493cbb0SBarry Smith 2455e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 24678b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 247d6dfbf8fSBarry Smith aij->assembled = 1; 2485e42470aSBarry Smith } 24978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2515e42470aSBarry Smith 2528a729477SBarry Smith return 0; 2538a729477SBarry Smith } 2548a729477SBarry Smith 2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2561eb62cbbSBarry Smith { 25744a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 258dbd7a890SLois Curfman McInnes int ierr; 25978b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26078b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2611eb62cbbSBarry Smith return 0; 2621eb62cbbSBarry Smith } 2631eb62cbbSBarry Smith 2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2651eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2661eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2671eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2681eb62cbbSBarry Smith routine. 2691eb62cbbSBarry Smith */ 27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2711eb62cbbSBarry Smith { 27244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 2731eb62cbbSBarry Smith int i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids; 2746abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 2751eb62cbbSBarry Smith int nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid; 2765392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 277d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 278d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2791eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2801eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2811eb62cbbSBarry Smith IS istmp; 2821eb62cbbSBarry Smith 28348d91487SBarry Smith if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix"); 28478b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 28578b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2861eb62cbbSBarry Smith 2871eb62cbbSBarry Smith /* first count number of contributors to each processor */ 28878b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 289416022c9SBarry Smith PetscZero(nprocs,2*numtids*sizeof(int)); procs = nprocs + numtids; 29078b31e54SBarry Smith owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2911eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 2921eb62cbbSBarry Smith idx = rows[i]; 2931eb62cbbSBarry Smith found = 0; 2941eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 2951eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 2961eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2971eb62cbbSBarry Smith } 2981eb62cbbSBarry Smith } 299bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3001eb62cbbSBarry Smith } 3011eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 3021eb62cbbSBarry Smith 3031eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 30478b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 305d65a2f8fSBarry Smith MPI_Allreduce( procs, work,numtids,MPI_INT,MPI_SUM,comm); 3061eb62cbbSBarry Smith nrecvs = work[mytid]; 307d65a2f8fSBarry Smith MPI_Allreduce( nprocs, work,numtids,MPI_INT,MPI_MAX,comm); 3081eb62cbbSBarry Smith nmax = work[mytid]; 30978b31e54SBarry Smith PETSCFREE(work); 3101eb62cbbSBarry Smith 3111eb62cbbSBarry Smith /* post receives: */ 31278b31e54SBarry Smith rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 31378b31e54SBarry Smith CHKPTRQ(rvalues); 31478b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request)); 31578b31e54SBarry Smith CHKPTRQ(recv_waits); 3161eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 317416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3181eb62cbbSBarry Smith } 3191eb62cbbSBarry Smith 3201eb62cbbSBarry Smith /* do sends: 3211eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3221eb62cbbSBarry Smith the ith processor 3231eb62cbbSBarry Smith */ 32478b31e54SBarry Smith svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 32578b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 32678b31e54SBarry Smith CHKPTRQ(send_waits); 32778b31e54SBarry Smith starts = (int *) PETSCMALLOC( (numtids+1)*sizeof(int) ); CHKPTRQ(starts); 3281eb62cbbSBarry Smith starts[0] = 0; 3291eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3301eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3311eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3321eb62cbbSBarry Smith } 3331eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith starts[0] = 0; 3361eb62cbbSBarry Smith for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3371eb62cbbSBarry Smith count = 0; 3381eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 3391eb62cbbSBarry Smith if (procs[i]) { 340416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3411eb62cbbSBarry Smith } 3421eb62cbbSBarry Smith } 34378b31e54SBarry Smith PETSCFREE(starts); 3441eb62cbbSBarry Smith 3451eb62cbbSBarry Smith base = owners[mytid]; 3461eb62cbbSBarry Smith 3471eb62cbbSBarry Smith /* wait on receives */ 34878b31e54SBarry Smith lens = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3491eb62cbbSBarry Smith source = lens + nrecvs; 3501eb62cbbSBarry Smith count = nrecvs; slen = 0; 3511eb62cbbSBarry Smith while (count) { 352d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3531eb62cbbSBarry Smith /* unpack receives into our local space */ 3541eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 355d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 356d6dfbf8fSBarry Smith lens[imdex] = n; 3571eb62cbbSBarry Smith slen += n; 3581eb62cbbSBarry Smith count--; 3591eb62cbbSBarry Smith } 36078b31e54SBarry Smith PETSCFREE(recv_waits); 3611eb62cbbSBarry Smith 3621eb62cbbSBarry Smith /* move the data into the send scatter */ 36378b31e54SBarry Smith lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3641eb62cbbSBarry Smith count = 0; 3651eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3661eb62cbbSBarry Smith values = rvalues + i*nmax; 3671eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3681eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3691eb62cbbSBarry Smith } 3701eb62cbbSBarry Smith } 37178b31e54SBarry Smith PETSCFREE(rvalues); PETSCFREE(lens); 37278b31e54SBarry Smith PETSCFREE(owner); PETSCFREE(nprocs); 3731eb62cbbSBarry Smith 3741eb62cbbSBarry Smith /* actually zap the local rows */ 375416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 376464493b3SBarry Smith PLogObjectParent(A,istmp); 377416022c9SBarry Smith PETSCFREE(lrows); 37878b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 37978b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 38078b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3811eb62cbbSBarry Smith 3821eb62cbbSBarry Smith /* wait on sends */ 3831eb62cbbSBarry Smith if (nsends) { 38478b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC(nsends*sizeof(MPI_Status)); 38578b31e54SBarry Smith CHKPTRQ(send_status); 3861eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 38778b31e54SBarry Smith PETSCFREE(send_status); 3881eb62cbbSBarry Smith } 38978b31e54SBarry Smith PETSCFREE(send_waits); PETSCFREE(svalues); 3901eb62cbbSBarry Smith 3911eb62cbbSBarry Smith return 0; 3921eb62cbbSBarry Smith } 3931eb62cbbSBarry Smith 394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 3951eb62cbbSBarry Smith { 396416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 3971eb62cbbSBarry Smith int ierr; 398416022c9SBarry Smith 39948d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 40064119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 401416022c9SBarry Smith ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr); 40264119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 403416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4041eb62cbbSBarry Smith return 0; 4051eb62cbbSBarry Smith } 4061eb62cbbSBarry Smith 407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 408da3a660dSBarry Smith { 409416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 410da3a660dSBarry Smith int ierr; 41148d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 41264119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 413416022c9SBarry Smith ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 41464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 415416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 416da3a660dSBarry Smith return 0; 417da3a660dSBarry Smith } 418da3a660dSBarry Smith 419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 420da3a660dSBarry Smith { 421416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 422da3a660dSBarry Smith int ierr; 423da3a660dSBarry Smith 42448d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix"); 425da3a660dSBarry Smith /* do nondiagonal part */ 426416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 427da3a660dSBarry Smith /* send it on its way */ 428416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 42964119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 430da3a660dSBarry Smith /* do local part */ 431416022c9SBarry Smith ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr); 432da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 433da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 434da3a660dSBarry Smith /* but is not perhaps always true. */ 435416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 43664119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 437da3a660dSBarry Smith return 0; 438da3a660dSBarry Smith } 439da3a660dSBarry Smith 440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 441da3a660dSBarry Smith { 442416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 443da3a660dSBarry Smith int ierr; 444da3a660dSBarry Smith 44548d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix"); 446da3a660dSBarry Smith /* do nondiagonal part */ 447416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 449416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 45064119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 452416022c9SBarry Smith ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 456416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 45764119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 4611eb62cbbSBarry Smith /* 4621eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4631eb62cbbSBarry Smith diagonal block 4641eb62cbbSBarry Smith */ 465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 4661eb62cbbSBarry Smith { 467416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 46848d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix"); 469416022c9SBarry Smith return MatGetDiagonal(a->A,v); 4701eb62cbbSBarry Smith } 4711eb62cbbSBarry Smith 47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4731eb62cbbSBarry Smith { 4741eb62cbbSBarry Smith Mat mat = (Mat) obj; 47544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4761eb62cbbSBarry Smith int ierr; 477a5a9c739SBarry Smith #if defined(PETSC_LOG) 4786e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 479a5a9c739SBarry Smith #endif 48078b31e54SBarry Smith PETSCFREE(aij->rowners); 48178b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 48278b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 48378b31e54SBarry Smith if (aij->colmap) PETSCFREE(aij->colmap); 48478b31e54SBarry Smith if (aij->garray) PETSCFREE(aij->garray); 4851eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 4861eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 48778b31e54SBarry Smith PETSCFREE(aij); 488a5a9c739SBarry Smith PLogObjectDestroy(mat); 489a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 4901eb62cbbSBarry Smith return 0; 4911eb62cbbSBarry Smith } 4927857610eSBarry Smith #include "draw.h" 493b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 494ee50ffe9SBarry Smith 495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 4961eb62cbbSBarry Smith { 497416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 498416022c9SBarry Smith int ierr; 499416022c9SBarry Smith 500416022c9SBarry Smith if (aij->numtids == 1) { 501416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 502416022c9SBarry Smith } 503416022c9SBarry Smith return 0; 504416022c9SBarry Smith } 505416022c9SBarry Smith 506416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer) 507416022c9SBarry Smith { 50844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 509dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 510416022c9SBarry Smith int ierr, format,shift = C->indexshift; 511d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 512d636dbe3SBarry Smith FILE *fd; 513416022c9SBarry Smith 514416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) { 515416022c9SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 516416022c9SBarry Smith if (format == FILE_FORMAT_INFO) { 517416022c9SBarry Smith return 0; 518416022c9SBarry Smith } 519416022c9SBarry Smith } 520416022c9SBarry Smith 521416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER) { 522d636dbe3SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 5237f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 524d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 5251eb62cbbSBarry Smith aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5261eb62cbbSBarry Smith aij->cend); 52778b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 52878b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 529d13ab20cSBarry Smith fflush(fd); 5307f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 531d13ab20cSBarry Smith } 532416022c9SBarry Smith else { 53395373324SBarry Smith int numtids = aij->numtids, mytid = aij->mytid; 53495373324SBarry Smith if (numtids == 1) { 53578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 53695373324SBarry Smith } 53795373324SBarry Smith else { 53895373324SBarry Smith /* assemble the entire matrix onto first processor. */ 53995373324SBarry Smith Mat A; 540ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 5412eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 54295373324SBarry Smith Scalar *a; 5432ee70a88SLois Curfman McInnes 54495373324SBarry Smith if (!mytid) { 545416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr); 54695373324SBarry Smith } 54795373324SBarry Smith else { 548416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr); 54995373324SBarry Smith } 550464493b3SBarry Smith PLogObjectParent(mat,A); 551416022c9SBarry Smith 55295373324SBarry Smith 55395373324SBarry Smith /* copy over the A part */ 554ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 5552ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 55695373324SBarry Smith row = aij->rstart; 557dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 55895373324SBarry Smith for ( i=0; i<m; i++ ) { 559416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 56095373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 56195373324SBarry Smith } 5622ee70a88SLois Curfman McInnes aj = Aloc->j; 563dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 56495373324SBarry Smith 56595373324SBarry Smith /* copy over the B part */ 566ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 5672ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 56895373324SBarry Smith row = aij->rstart; 56978b31e54SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 570dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 57195373324SBarry Smith for ( i=0; i<m; i++ ) { 572416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 57395373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 57495373324SBarry Smith } 57578b31e54SBarry Smith PETSCFREE(ct); 57678b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 57778b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 57895373324SBarry Smith if (!mytid) { 57978b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 58095373324SBarry Smith } 58178b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 58295373324SBarry Smith } 58395373324SBarry Smith } 5841eb62cbbSBarry Smith return 0; 5851eb62cbbSBarry Smith } 5861eb62cbbSBarry Smith 587416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 588416022c9SBarry Smith { 589416022c9SBarry Smith Mat mat = (Mat) obj; 590416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 591416022c9SBarry Smith int ierr; 592416022c9SBarry Smith PetscObject vobj = (PetscObject) viewer; 593416022c9SBarry Smith 59448d91487SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix"); 595416022c9SBarry Smith if (!viewer) { 596416022c9SBarry Smith viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 597416022c9SBarry Smith } 598416022c9SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 599416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 600416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 601416022c9SBarry Smith } 602416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) { 603416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 604416022c9SBarry Smith } 605416022c9SBarry Smith else if (vobj->cookie == DRAW_COOKIE) { 606416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 607416022c9SBarry Smith } 608416022c9SBarry Smith else if (vobj->type == BINARY_FILE_VIEWER) { 609416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 610416022c9SBarry Smith } 611416022c9SBarry Smith return 0; 612416022c9SBarry Smith } 613416022c9SBarry Smith 614ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 6151eb62cbbSBarry Smith /* 6161eb62cbbSBarry Smith This has to provide several versions. 6171eb62cbbSBarry Smith 6181eb62cbbSBarry Smith 1) per sequential 6191eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6201eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 621d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6221eb62cbbSBarry Smith */ 623fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 624dbb450caSBarry Smith double fshift,int its,Vec xx) 6258a729477SBarry Smith { 62644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 627d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 628ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 6296abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6306abc6512SBarry Smith int ierr,*idx, *diag; 631416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 632da3a660dSBarry Smith Vec tt; 6338a729477SBarry Smith 63448d91487SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix"); 6351eb62cbbSBarry Smith 636d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 637dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 638dbb450caSBarry Smith ls = ls + shift; 639ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 640d6dfbf8fSBarry Smith diag = A->diag; 641acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 64248d91487SBarry Smith SETERRQ(1,"MatRelax_MPIAIJ:Option not supported"); 643acb40c82SBarry Smith } 644da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 645da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 646da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 647da3a660dSBarry Smith 648da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 649da3a660dSBarry Smith 650da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 651da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 652da3a660dSBarry Smith is the relaxation factor. 653da3a660dSBarry Smith */ 65478b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 655464493b3SBarry Smith PLogObjectParent(matin,tt); 656da3a660dSBarry Smith VecGetArray(tt,&t); 657da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 658da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 659da3a660dSBarry Smith VecSet(&zero,mat->lvec); 66064119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 66178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 662da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 663da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 664dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 665dbb450caSBarry Smith v = A->a + diag[i] + !shift; 666da3a660dSBarry Smith sum = b[i]; 667da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 668dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 669da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 670dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 671dbb450caSBarry Smith v = B->a + B->i[i] + shift; 672da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 673da3a660dSBarry Smith x[i] = omega*(sum/d); 674da3a660dSBarry Smith } 67564119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 67678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 677da3a660dSBarry Smith 678da3a660dSBarry Smith /* t = b - (2*E - D)x */ 679da3a660dSBarry Smith v = A->a; 680dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 681da3a660dSBarry Smith 682da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 683dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 684da3a660dSBarry Smith diag = A->diag; 685da3a660dSBarry Smith VecSet(&zero,mat->lvec); 68664119d58SLois Curfman McInnes ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 68778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 688da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 689da3a660dSBarry Smith n = diag[i] - A->i[i]; 690dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 691dbb450caSBarry Smith v = A->a + A->i[i] + shift; 692da3a660dSBarry Smith sum = t[i]; 693da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 694dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 695da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 696dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 697dbb450caSBarry Smith v = B->a + B->i[i] + shift; 698da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 699da3a660dSBarry Smith t[i] = omega*(sum/d); 700da3a660dSBarry Smith } 70164119d58SLois Curfman McInnes ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 70278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 703da3a660dSBarry Smith /* x = x + t */ 704da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 705da3a660dSBarry Smith VecDestroy(tt); 706da3a660dSBarry Smith return 0; 707da3a660dSBarry Smith } 708da3a660dSBarry Smith 7091eb62cbbSBarry Smith 710d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 711da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 712da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 713da3a660dSBarry Smith } 714da3a660dSBarry Smith else { 71564119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 71678b31e54SBarry Smith CHKERRQ(ierr); 71764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 71878b31e54SBarry Smith CHKERRQ(ierr); 719da3a660dSBarry Smith } 720d6dfbf8fSBarry Smith while (its--) { 721d6dfbf8fSBarry Smith /* go down through the rows */ 72264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 72378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 724d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 725d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 726dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 727dbb450caSBarry Smith v = A->a + A->i[i] + shift; 728d6dfbf8fSBarry Smith sum = b[i]; 729d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 730dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 731d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 732dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 733dbb450caSBarry Smith v = B->a + B->i[i] + shift; 734d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 735d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 736d6dfbf8fSBarry Smith } 73764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 73878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 739d6dfbf8fSBarry Smith /* come up through the rows */ 74064119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 74178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 742d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 743d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 744dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 745dbb450caSBarry Smith v = A->a + A->i[i] + shift; 746d6dfbf8fSBarry Smith sum = b[i]; 747d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 748dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 749d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 750dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 751dbb450caSBarry Smith v = B->a + B->i[i] + shift; 752d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 753d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 754d6dfbf8fSBarry Smith } 75564119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 75678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 757d6dfbf8fSBarry Smith } 758d6dfbf8fSBarry Smith } 759d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 760da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 761da3a660dSBarry Smith VecSet(&zero,mat->lvec); 76264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 76378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 764da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 765da3a660dSBarry Smith n = diag[i] - A->i[i]; 766dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 767dbb450caSBarry Smith v = A->a + A->i[i] + shift; 768da3a660dSBarry Smith sum = b[i]; 769da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 770dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 771da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 772dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 773dbb450caSBarry Smith v = B->a + B->i[i] + shift; 774da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 775da3a660dSBarry Smith x[i] = omega*(sum/d); 776da3a660dSBarry Smith } 77764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 77878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 779da3a660dSBarry Smith its--; 780da3a660dSBarry Smith } 781d6dfbf8fSBarry Smith while (its--) { 78264119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 78378b31e54SBarry Smith CHKERRQ(ierr); 78464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 78578b31e54SBarry Smith CHKERRQ(ierr); 78664119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 78778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 788d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 789d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 790dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 791dbb450caSBarry Smith v = A->a + A->i[i] + shift; 792d6dfbf8fSBarry Smith sum = b[i]; 793d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 794dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 795d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 796dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 797dbb450caSBarry Smith v = B->a + B->i[i] + shift; 798d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 799d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 800d6dfbf8fSBarry Smith } 80164119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 803d6dfbf8fSBarry Smith } 804d6dfbf8fSBarry Smith } 805d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 806da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 807da3a660dSBarry Smith VecSet(&zero,mat->lvec); 80864119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 80978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 810da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 811da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 812dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 813dbb450caSBarry Smith v = A->a + diag[i] + !shift; 814da3a660dSBarry Smith sum = b[i]; 815da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 816dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 817da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 818dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 819dbb450caSBarry Smith v = B->a + B->i[i] + shift; 820da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 821da3a660dSBarry Smith x[i] = omega*(sum/d); 822da3a660dSBarry Smith } 82364119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 82478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 825da3a660dSBarry Smith its--; 826da3a660dSBarry Smith } 827d6dfbf8fSBarry Smith while (its--) { 82864119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 82978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 83064119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 83178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 83264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 83378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 834d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 835d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 836dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 837dbb450caSBarry Smith v = A->a + A->i[i] + shift; 838d6dfbf8fSBarry Smith sum = b[i]; 839d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 840dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 841d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 842dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 843dbb450caSBarry Smith v = B->a + B->i[i] + shift; 844d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 845d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 846d6dfbf8fSBarry Smith } 84764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 84878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 849d6dfbf8fSBarry Smith } 850d6dfbf8fSBarry Smith } 851d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 852da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 853dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 854da3a660dSBarry Smith } 85564119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 85678b31e54SBarry Smith CHKERRQ(ierr); 85764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 85878b31e54SBarry Smith CHKERRQ(ierr); 859d6dfbf8fSBarry Smith while (its--) { 860d6dfbf8fSBarry Smith /* go down through the rows */ 861d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 862d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 863dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 864dbb450caSBarry Smith v = A->a + A->i[i] + shift; 865d6dfbf8fSBarry Smith sum = b[i]; 866d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 867dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 868d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 869dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 870dbb450caSBarry Smith v = B->a + B->i[i] + shift; 871d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 872d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 873d6dfbf8fSBarry Smith } 874d6dfbf8fSBarry Smith /* come up through the rows */ 875d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 876d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 877dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 878dbb450caSBarry Smith v = A->a + A->i[i] + shift; 879d6dfbf8fSBarry Smith sum = b[i]; 880d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 881dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 882d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 883dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 884dbb450caSBarry Smith v = B->a + B->i[i] + shift; 885d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 886d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 887d6dfbf8fSBarry Smith } 888d6dfbf8fSBarry Smith } 889d6dfbf8fSBarry Smith } 890d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 891da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 892dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 893da3a660dSBarry Smith } 89464119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 89578b31e54SBarry Smith CHKERRQ(ierr); 89664119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 89778b31e54SBarry Smith CHKERRQ(ierr); 898d6dfbf8fSBarry Smith while (its--) { 899d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 900d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 901dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 902dbb450caSBarry Smith v = A->a + A->i[i] + shift; 903d6dfbf8fSBarry Smith sum = b[i]; 904d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 905dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 906d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 907dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 908dbb450caSBarry Smith v = B->a + B->i[i] + shift; 909d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 910d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 911d6dfbf8fSBarry Smith } 912d6dfbf8fSBarry Smith } 913d6dfbf8fSBarry Smith } 914d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 915da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 916dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 917da3a660dSBarry Smith } 91864119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 91978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 92064119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 92178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 922d6dfbf8fSBarry Smith while (its--) { 923d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 924d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 925dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 926dbb450caSBarry Smith v = A->a + A->i[i] + shift; 927d6dfbf8fSBarry Smith sum = b[i]; 928d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 929dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 930d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 931dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 932dbb450caSBarry Smith v = B->a + B->i[i] + shift; 933d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 934d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 935d6dfbf8fSBarry Smith } 936d6dfbf8fSBarry Smith } 937d6dfbf8fSBarry Smith } 9388a729477SBarry Smith return 0; 9398a729477SBarry Smith } 940a66be287SLois Curfman McInnes 941fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 942fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 943a66be287SLois Curfman McInnes { 944a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 945a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 946a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 947a66be287SLois Curfman McInnes 94878b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 94978b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 950a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 951a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 952a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 953a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 954d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 955a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 956a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 957d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 958a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 959a66be287SLois Curfman McInnes } 960a66be287SLois Curfman McInnes return 0; 961a66be287SLois Curfman McInnes } 962a66be287SLois Curfman McInnes 963299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 964299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 965299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 966299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 967299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 968299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 969299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 970299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 971299609e3SLois Curfman McInnes 972416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 973c74985f6SBarry Smith { 974*c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 975c74985f6SBarry Smith 976*c0bbcb79SLois Curfman McInnes if (op == NO_NEW_NONZERO_LOCATIONS || 977*c0bbcb79SLois Curfman McInnes op == YES_NEW_NONZERO_LOCATIONS || 978*c0bbcb79SLois Curfman McInnes op == COLUMNS_SORTED || 979*c0bbcb79SLois Curfman McInnes op == ROW_ORIENTED) { 980*c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 981*c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 982c74985f6SBarry Smith } 983*c0bbcb79SLois Curfman McInnes else if (op == ROWS_SORTED || 984*c0bbcb79SLois Curfman McInnes op == SYMMETRIC_MATRIX || 985*c0bbcb79SLois Curfman McInnes op == STRUCTURALLY_SYMMETRIC_MATRIX || 986*c0bbcb79SLois Curfman McInnes op == YES_NEW_DIAGONALS) 987*c0bbcb79SLois Curfman McInnes PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n"); 988bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 989*c0bbcb79SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED not supported");} 990*c0bbcb79SLois Curfman McInnes else if (op == NO_NEW_DIAGONALS) 991*c0bbcb79SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS not supported");} 992*c0bbcb79SLois Curfman McInnes else 993*c0bbcb79SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:Option not supported");} 994c74985f6SBarry Smith return 0; 995c74985f6SBarry Smith } 996c74985f6SBarry Smith 997d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 998c74985f6SBarry Smith { 99944a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1000c74985f6SBarry Smith *m = mat->M; *n = mat->N; 1001c74985f6SBarry Smith return 0; 1002c74985f6SBarry Smith } 1003c74985f6SBarry Smith 1004d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1005c74985f6SBarry Smith { 100644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1007b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1008c74985f6SBarry Smith return 0; 1009c74985f6SBarry Smith } 1010c74985f6SBarry Smith 1011d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1012c74985f6SBarry Smith { 101344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1014c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1015c74985f6SBarry Smith return 0; 1016c74985f6SBarry Smith } 1017c74985f6SBarry Smith 101839e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 101939e00950SLois Curfman McInnes { 1020154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1021154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 1022154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1023154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 102439e00950SLois Curfman McInnes 1025416022c9SBarry Smith if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows") 1026abc0e9e4SLois Curfman McInnes lrow = row - rstart; 102739e00950SLois Curfman McInnes 1028154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1029154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1030154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 103178b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 103278b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1033154123eaSLois Curfman McInnes nztot = nzA + nzB; 1034154123eaSLois Curfman McInnes 1035154123eaSLois Curfman McInnes if (v || idx) { 1036154123eaSLois Curfman McInnes if (nztot) { 1037154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1038299609e3SLois Curfman McInnes int imark; 103948b35521SBarry Smith if (mat->assembled) { 1040154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 104148b35521SBarry Smith } 1042154123eaSLois Curfman McInnes if (v) { 104378b31e54SBarry Smith *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 104439e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1045154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1046154123eaSLois Curfman McInnes else break; 1047154123eaSLois Curfman McInnes } 1048154123eaSLois Curfman McInnes imark = i; 1049154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1050299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1051154123eaSLois Curfman McInnes } 1052154123eaSLois Curfman McInnes if (idx) { 105378b31e54SBarry Smith *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1054154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1055154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1056154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1057154123eaSLois Curfman McInnes else break; 1058154123eaSLois Curfman McInnes } 1059154123eaSLois Curfman McInnes imark = i; 1060154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1061299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 106239e00950SLois Curfman McInnes } 106339e00950SLois Curfman McInnes } 106439e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1065154123eaSLois Curfman McInnes } 106639e00950SLois Curfman McInnes *nz = nztot; 106778b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 106878b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 106939e00950SLois Curfman McInnes return 0; 107039e00950SLois Curfman McInnes } 107139e00950SLois Curfman McInnes 107239e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 107339e00950SLois Curfman McInnes { 107478b31e54SBarry Smith if (idx) PETSCFREE(*idx); 107578b31e54SBarry Smith if (v) PETSCFREE(*v); 107639e00950SLois Curfman McInnes return 0; 107739e00950SLois Curfman McInnes } 107839e00950SLois Curfman McInnes 1079855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm) 1080855ac2c5SLois Curfman McInnes { 1081855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1082ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1083416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1084416022c9SBarry Smith double sum = 0.0; 108504ca555eSLois Curfman McInnes Scalar *v; 108604ca555eSLois Curfman McInnes 1087416022c9SBarry Smith if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix"); 1088855ac2c5SLois Curfman McInnes if (aij->numtids == 1) { 108914183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 109037fa93a5SLois Curfman McInnes } else { 109104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 109204ca555eSLois Curfman McInnes v = amat->a; 109304ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 109404ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 109504ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 109604ca555eSLois Curfman McInnes #else 109704ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 109804ca555eSLois Curfman McInnes #endif 109904ca555eSLois Curfman McInnes } 110004ca555eSLois Curfman McInnes v = bmat->a; 110104ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 110204ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 110304ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 110404ca555eSLois Curfman McInnes #else 110504ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 110604ca555eSLois Curfman McInnes #endif 110704ca555eSLois Curfman McInnes } 110804ca555eSLois Curfman McInnes MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 110904ca555eSLois Curfman McInnes *norm = sqrt(*norm); 111004ca555eSLois Curfman McInnes } 111104ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 111204ca555eSLois Curfman McInnes double *tmp, *tmp2; 111304ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 111404ca555eSLois Curfman McInnes tmp = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp); 111504ca555eSLois Curfman McInnes tmp2 = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1116416022c9SBarry Smith PetscZero(tmp,aij->N*sizeof(double)); 111704ca555eSLois Curfman McInnes *norm = 0.0; 111804ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 111904ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 112004ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1121dbb450caSBarry Smith tmp[cstart + *jj++ + shift] += abs(*v++); 112204ca555eSLois Curfman McInnes #else 1123dbb450caSBarry Smith tmp[cstart + *jj++ + shift] += fabs(*v++); 112404ca555eSLois Curfman McInnes #endif 112504ca555eSLois Curfman McInnes } 112604ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 112704ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 112804ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1129dbb450caSBarry Smith tmp[garray[*jj++ + shift]] += abs(*v++); 113004ca555eSLois Curfman McInnes #else 1131dbb450caSBarry Smith tmp[garray[*jj++ + shift]] += fabs(*v++); 113204ca555eSLois Curfman McInnes #endif 113304ca555eSLois Curfman McInnes } 113404ca555eSLois Curfman McInnes MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 113504ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 113604ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 113704ca555eSLois Curfman McInnes } 113804ca555eSLois Curfman McInnes PETSCFREE(tmp); PETSCFREE(tmp2); 113904ca555eSLois Curfman McInnes } 114004ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 114104ca555eSLois Curfman McInnes double normtemp = 0.0; 114204ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1143dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 114404ca555eSLois Curfman McInnes sum = 0.0; 114504ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 114604ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 114704ca555eSLois Curfman McInnes sum += abs(*v); v++; 114804ca555eSLois Curfman McInnes #else 114904ca555eSLois Curfman McInnes sum += fabs(*v); v++; 115004ca555eSLois Curfman McInnes #endif 115104ca555eSLois Curfman McInnes } 1152dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 115304ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 115404ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 115504ca555eSLois Curfman McInnes sum += abs(*v); v++; 115604ca555eSLois Curfman McInnes #else 115704ca555eSLois Curfman McInnes sum += fabs(*v); v++; 115804ca555eSLois Curfman McInnes #endif 115904ca555eSLois Curfman McInnes } 116004ca555eSLois Curfman McInnes if (sum > normtemp) normtemp = sum; 116104ca555eSLois Curfman McInnes MPI_Allreduce((void*)&normtemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 116204ca555eSLois Curfman McInnes } 116304ca555eSLois Curfman McInnes } 116404ca555eSLois Curfman McInnes else { 116548d91487SBarry Smith SETERRQ(1,"MatNorm_MPIRow:No support for two norm"); 116604ca555eSLois Curfman McInnes } 116737fa93a5SLois Curfman McInnes } 1168855ac2c5SLois Curfman McInnes return 0; 1169855ac2c5SLois Curfman McInnes } 1170855ac2c5SLois Curfman McInnes 11710de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1172b7c46309SBarry Smith { 1173b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1174dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1175416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1176416022c9SBarry Smith Mat B; 1177b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1178b7c46309SBarry Smith Scalar *array; 1179b7c46309SBarry Smith 1180416022c9SBarry Smith if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place"); 1181b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1182b7c46309SBarry Smith CHKERRQ(ierr); 1183b7c46309SBarry Smith 1184b7c46309SBarry Smith /* copy over the A part */ 1185ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1186b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1187b7c46309SBarry Smith row = a->rstart; 1188dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1189b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1190416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1191b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1192b7c46309SBarry Smith } 1193b7c46309SBarry Smith aj = Aloc->j; 1194dbb450caSBarry Smith for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;} 1195b7c46309SBarry Smith 1196b7c46309SBarry Smith /* copy over the B part */ 1197ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1198b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1199b7c46309SBarry Smith row = a->rstart; 12001987afe7SBarry Smith ct = cols = (int *) PETSCMALLOC( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1201dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1202b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1203416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1204b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1205b7c46309SBarry Smith } 1206b7c46309SBarry Smith PETSCFREE(ct); 1207b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1208b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 12090de55854SLois Curfman McInnes if (matout) { 12100de55854SLois Curfman McInnes *matout = B; 12110de55854SLois Curfman McInnes } else { 12120de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 12130de55854SLois Curfman McInnes PETSCFREE(a->rowners); 12140de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 12150de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 12160de55854SLois Curfman McInnes if (a->colmap) PETSCFREE(a->colmap); 12170de55854SLois Curfman McInnes if (a->garray) PETSCFREE(a->garray); 12180de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 12190de55854SLois Curfman McInnes if (a->Mvctx) VecScatterCtxDestroy(a->Mvctx); 12200de55854SLois Curfman McInnes PETSCFREE(a); 1221416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 12220de55854SLois Curfman McInnes PETSCHEADERDESTROY(B); 12230de55854SLois Curfman McInnes } 1224b7c46309SBarry Smith return 0; 1225b7c46309SBarry Smith } 1226b7c46309SBarry Smith 1227fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1228ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *); 1229d6dfbf8fSBarry Smith 12308a729477SBarry Smith /* -------------------------------------------------------------------*/ 12312ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 123239e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 123344a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 123444a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1235299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1236299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1237299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 123844a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1239b7c46309SBarry Smith MatTranspose_MPIAIJ, 1240a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1241855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1242ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 12431eb62cbbSBarry Smith 0, 1244299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1245299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1246299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1247d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1248299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1249ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 12508a729477SBarry Smith 12511987afe7SBarry Smith /*@C 1252ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1253ff756334SLois Curfman McInnes (the default parallel PETSc format). 12548a729477SBarry Smith 12558a729477SBarry Smith Input Parameters: 12561eb62cbbSBarry Smith . comm - MPI communicator 12577d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 12587d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 12597d3e4905SLois Curfman McInnes if N is given) 12607d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 12617d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 12627d3e4905SLois Curfman McInnes if n is given) 1263ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1264ff756334SLois Curfman McInnes (same for all local rows) 1265ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1266ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1267ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1268ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1269ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1270ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1271ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 12728a729477SBarry Smith 1273ff756334SLois Curfman McInnes Output Parameter: 12748a729477SBarry Smith . newmat - the matrix 12758a729477SBarry Smith 1276ff756334SLois Curfman McInnes Notes: 1277ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1278ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 1279ff756334SLois Curfman McInnes storage. That is, the stored row and column indices begin at 1280ab693e5aSLois Curfman McInnes one, not zero. See the users manual for further details. 1281ff756334SLois Curfman McInnes 1282ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1283ff756334SLois Curfman McInnes (possibly both). 1284ff756334SLois Curfman McInnes 1285e0245417SLois Curfman McInnes Storage Information: 1286e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1287e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1288e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1289e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1290e0245417SLois Curfman McInnes 1291e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1292e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1293e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1294e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1295e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1296ff756334SLois Curfman McInnes 1297dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1298ff756334SLois Curfman McInnes 1299fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 13008a729477SBarry Smith @*/ 13011eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 13021eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 13038a729477SBarry Smith { 13048a729477SBarry Smith Mat mat; 1305416022c9SBarry Smith Mat_MPIAIJ *a; 13066abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1307416022c9SBarry Smith 13088a729477SBarry Smith *newmat = 0; 130944a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1310a5a9c739SBarry Smith PLogObjectCreate(mat); 1311416022c9SBarry Smith mat->data = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a); 1312416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 131344a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 131444a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 13158a729477SBarry Smith mat->factor = 0; 1316d6dfbf8fSBarry Smith 131764119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1318416022c9SBarry Smith MPI_Comm_rank(comm,&a->mytid); 1319416022c9SBarry Smith MPI_Comm_size(comm,&a->numtids); 13201eb62cbbSBarry Smith 13211987afe7SBarry Smith if (m == PETSC_DECIDE && (d_nnz || o_nnz)) 13221987afe7SBarry Smith SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz"); 13231987afe7SBarry Smith 1324dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 13251eb62cbbSBarry Smith work[0] = m; work[1] = n; 1326d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1327dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1328dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 13291eb62cbbSBarry Smith } 1330416022c9SBarry Smith if (m == PETSC_DECIDE) {m = M/a->numtids + ((M % a->numtids) > a->mytid);} 1331416022c9SBarry Smith if (n == PETSC_DECIDE) {n = N/a->numtids + ((N % a->numtids) > a->mytid);} 1332416022c9SBarry Smith a->m = m; 1333416022c9SBarry Smith a->n = n; 1334416022c9SBarry Smith a->N = N; 1335416022c9SBarry Smith a->M = M; 13361eb62cbbSBarry Smith 13371eb62cbbSBarry Smith /* build local table of row and column ownerships */ 1338416022c9SBarry Smith a->rowners = (int *) PETSCMALLOC(2*(a->numtids+2)*sizeof(int)); CHKPTRQ(a->rowners); 1339416022c9SBarry Smith PLogObjectMemory(mat,2*(a->numtids+2)*sizeof(int)+sizeof(struct _Mat)+ 1340464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 1341416022c9SBarry Smith a->cowners = a->rowners + a->numtids + 1; 1342416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 1343416022c9SBarry Smith a->rowners[0] = 0; 1344416022c9SBarry Smith for ( i=2; i<=a->numtids; i++ ) { 1345416022c9SBarry Smith a->rowners[i] += a->rowners[i-1]; 13468a729477SBarry Smith } 1347416022c9SBarry Smith a->rstart = a->rowners[a->mytid]; 1348416022c9SBarry Smith a->rend = a->rowners[a->mytid+1]; 1349416022c9SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 1350416022c9SBarry Smith a->cowners[0] = 0; 1351416022c9SBarry Smith for ( i=2; i<=a->numtids; i++ ) { 1352416022c9SBarry Smith a->cowners[i] += a->cowners[i-1]; 13538a729477SBarry Smith } 1354416022c9SBarry Smith a->cstart = a->cowners[a->mytid]; 1355416022c9SBarry Smith a->cend = a->cowners[a->mytid+1]; 13568a729477SBarry Smith 1357416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr); 1358416022c9SBarry Smith PLogObjectParent(mat,a->A); 1359416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr); 1360416022c9SBarry Smith PLogObjectParent(mat,a->B); 13618a729477SBarry Smith 13621eb62cbbSBarry Smith /* build cache for off array entries formed */ 1363416022c9SBarry Smith ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1364416022c9SBarry Smith a->colmap = 0; 1365416022c9SBarry Smith a->garray = 0; 13668a729477SBarry Smith 13671eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1368416022c9SBarry Smith a->lvec = 0; 1369416022c9SBarry Smith a->Mvctx = 0; 1370416022c9SBarry Smith a->assembled = 0; 13718a729477SBarry Smith 1372d6dfbf8fSBarry Smith *newmat = mat; 1373d6dfbf8fSBarry Smith return 0; 1374d6dfbf8fSBarry Smith } 1375c74985f6SBarry Smith 1376ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat) 1377d6dfbf8fSBarry Smith { 1378d6dfbf8fSBarry Smith Mat mat; 1379416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 13802ee70a88SLois Curfman McInnes int ierr, len; 1381d6dfbf8fSBarry Smith 1382416022c9SBarry Smith if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix"); 1383416022c9SBarry Smith *newmat = 0; 138444a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1385a5a9c739SBarry Smith PLogObjectCreate(mat); 1386416022c9SBarry Smith mat->data = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a); 1387416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 138844a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 138944a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1390d6dfbf8fSBarry Smith mat->factor = matin->factor; 1391d6dfbf8fSBarry Smith 1392416022c9SBarry Smith a->m = oldmat->m; 1393416022c9SBarry Smith a->n = oldmat->n; 1394416022c9SBarry Smith a->M = oldmat->M; 1395416022c9SBarry Smith a->N = oldmat->N; 1396d6dfbf8fSBarry Smith 1397416022c9SBarry Smith a->assembled = 1; 1398416022c9SBarry Smith a->rstart = oldmat->rstart; 1399416022c9SBarry Smith a->rend = oldmat->rend; 1400416022c9SBarry Smith a->cstart = oldmat->cstart; 1401416022c9SBarry Smith a->cend = oldmat->cend; 1402416022c9SBarry Smith a->numtids = oldmat->numtids; 1403416022c9SBarry Smith a->mytid = oldmat->mytid; 140464119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1405d6dfbf8fSBarry Smith 1406416022c9SBarry Smith a->rowners = (int *) PETSCMALLOC((a->numtids+1)*sizeof(int));CHKPTRQ(a->rowners); 1407416022c9SBarry Smith PLogObjectMemory(mat,(a->numtids+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 1408416022c9SBarry Smith PetscMemcpy(a->rowners,oldmat->rowners,(a->numtids+1)*sizeof(int)); 1409416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 14102ee70a88SLois Curfman McInnes if (oldmat->colmap) { 1411416022c9SBarry Smith a->colmap = (int *) PETSCMALLOC( (a->N)*sizeof(int) );CHKPTRQ(a->colmap); 1412416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1413416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1414416022c9SBarry Smith } else a->colmap = 0; 1415ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 1416416022c9SBarry Smith a->garray = (int *) PETSCMALLOC(len*sizeof(int) ); CHKPTRQ(a->garray); 1417464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1418416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1419416022c9SBarry Smith } else a->garray = 0; 1420d6dfbf8fSBarry Smith 1421416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1422416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1423416022c9SBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1424416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1425416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1426416022c9SBarry Smith PLogObjectParent(mat,a->A); 1427416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1428416022c9SBarry Smith PLogObjectParent(mat,a->B); 14298a729477SBarry Smith *newmat = mat; 14308a729477SBarry Smith return 0; 14318a729477SBarry Smith } 1432416022c9SBarry Smith 1433416022c9SBarry Smith #include "sysio.h" 1434416022c9SBarry Smith 143502834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat) 1436416022c9SBarry Smith { 1437d65a2f8fSBarry Smith Mat A; 1438416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1439d65a2f8fSBarry Smith Scalar *vals,*svals; 1440416022c9SBarry Smith PetscObject vobj = (PetscObject) bview; 1441416022c9SBarry Smith MPI_Comm comm = vobj->comm; 1442416022c9SBarry Smith MPI_Status status; 1443416022c9SBarry Smith int header[4],mytid,numtid,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1444d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1445d65a2f8fSBarry Smith int tag = ((PetscObject)bview)->tag; 1446416022c9SBarry Smith 1447416022c9SBarry Smith MPI_Comm_size(comm,&numtid); MPI_Comm_rank(comm,&mytid); 1448416022c9SBarry Smith if (!mytid) { 1449416022c9SBarry Smith ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr); 1450416022c9SBarry Smith ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr); 145102834360SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object"); 1452416022c9SBarry Smith } 1453416022c9SBarry Smith 1454416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1455416022c9SBarry Smith M = header[1]; N = header[2]; 1456416022c9SBarry Smith /* determine ownership of all rows */ 1457416022c9SBarry Smith m = M/numtid + ((M % numtid) > mytid); 1458416022c9SBarry Smith rowners = (int *) PETSCMALLOC((numtid+2)*sizeof(int)); CHKPTRQ(rowners); 1459416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1460416022c9SBarry Smith rowners[0] = 0; 1461416022c9SBarry Smith for ( i=2; i<=numtid; i++ ) { 1462416022c9SBarry Smith rowners[i] += rowners[i-1]; 1463416022c9SBarry Smith } 1464416022c9SBarry Smith rstart = rowners[mytid]; 1465416022c9SBarry Smith rend = rowners[mytid+1]; 1466416022c9SBarry Smith 1467416022c9SBarry Smith /* distribute row lengths to all processors */ 1468416022c9SBarry Smith ourlens = (int*) PETSCMALLOC( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1469416022c9SBarry Smith offlens = ourlens + (rend-rstart); 1470416022c9SBarry Smith if (!mytid) { 1471416022c9SBarry Smith rowlengths = (int*) PETSCMALLOC( M*sizeof(int) ); CHKPTRQ(rowlengths); 1472416022c9SBarry Smith ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr); 1473416022c9SBarry Smith sndcounts = (int*) PETSCMALLOC( numtid*sizeof(int) ); CHKPTRQ(sndcounts); 1474416022c9SBarry Smith for ( i=0; i<numtid; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1475d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 14766ef5f50fSLois Curfman McInnes PETSCFREE(sndcounts); 1477416022c9SBarry Smith } 1478416022c9SBarry Smith else { 1479416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1480416022c9SBarry Smith } 1481416022c9SBarry Smith 1482416022c9SBarry Smith if (!mytid) { 1483416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 1484416022c9SBarry Smith procsnz = (int*) PETSCMALLOC( numtid*sizeof(int) ); CHKPTRQ(procsnz); 1485416022c9SBarry Smith PetscZero(procsnz,numtid*sizeof(int)); 1486416022c9SBarry Smith for ( i=0; i<numtid; i++ ) { 1487416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1488416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1489416022c9SBarry Smith } 1490416022c9SBarry Smith } 14916ef5f50fSLois Curfman McInnes PETSCFREE(rowlengths); 1492416022c9SBarry Smith 1493416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1494416022c9SBarry Smith maxnz = 0; 1495416022c9SBarry Smith for ( i=0; i<numtid; i++ ) { 1496416022c9SBarry Smith maxnz = PETSCMAX(maxnz,procsnz[i]); 1497416022c9SBarry Smith } 1498416022c9SBarry Smith cols = (int *) PETSCMALLOC( maxnz*sizeof(int) ); CHKPTRQ(cols); 1499416022c9SBarry Smith 1500416022c9SBarry Smith /* read in my part of the matrix column indices */ 1501416022c9SBarry Smith nz = procsnz[0]; 1502d65a2f8fSBarry Smith mycols = (int *) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols); 1503d65a2f8fSBarry Smith ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr); 1504d65a2f8fSBarry Smith 1505d65a2f8fSBarry Smith /* read in every one elses and ship off */ 1506d65a2f8fSBarry Smith for ( i=1; i<numtid; i++ ) { 1507d65a2f8fSBarry Smith nz = procsnz[i]; 1508416022c9SBarry Smith ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr); 1509d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1510d65a2f8fSBarry Smith } 1511d65a2f8fSBarry Smith PETSCFREE(cols); 1512416022c9SBarry Smith } 1513416022c9SBarry Smith else { 1514416022c9SBarry Smith /* determine buffer space needed for message */ 1515416022c9SBarry Smith nz = 0; 1516416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1517416022c9SBarry Smith nz += ourlens[i]; 1518416022c9SBarry Smith } 1519d65a2f8fSBarry Smith mycols = (int*) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols); 1520416022c9SBarry Smith 1521416022c9SBarry Smith /* receive message of column indices*/ 1522d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1523416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 152402834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1525416022c9SBarry Smith } 1526416022c9SBarry Smith 1527416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1528416022c9SBarry Smith PetscZero(offlens,m*sizeof(int)); 1529416022c9SBarry Smith jj = 0; 1530416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1531416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1532d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1533416022c9SBarry Smith jj++; 1534416022c9SBarry Smith } 1535416022c9SBarry Smith } 1536d65a2f8fSBarry Smith 1537d65a2f8fSBarry Smith 1538d65a2f8fSBarry Smith /* create our matrix */ 1539416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1540416022c9SBarry Smith ourlens[i] -= offlens[i]; 1541416022c9SBarry Smith } 1542d65a2f8fSBarry Smith if (type == MATMPIAIJ) { 1543d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1544d65a2f8fSBarry Smith } 1545d65a2f8fSBarry Smith else if (type == MATMPIROW) { 1546d65a2f8fSBarry Smith ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1547d65a2f8fSBarry Smith } 1548d65a2f8fSBarry Smith A = *newmat; 1549d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1550d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1551d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1552d65a2f8fSBarry Smith } 1553416022c9SBarry Smith 1554416022c9SBarry Smith if (!mytid) { 1555416022c9SBarry Smith vals = (Scalar *) PETSCMALLOC( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1556416022c9SBarry Smith 1557416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1558416022c9SBarry Smith nz = procsnz[0]; 1559416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1560d65a2f8fSBarry Smith 1561d65a2f8fSBarry Smith /* insert into matrix */ 1562d65a2f8fSBarry Smith jj = rstart; 1563d65a2f8fSBarry Smith smycols = mycols; 1564d65a2f8fSBarry Smith svals = vals; 1565d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1566d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1567d65a2f8fSBarry Smith smycols += ourlens[i]; 1568d65a2f8fSBarry Smith svals += ourlens[i]; 1569d65a2f8fSBarry Smith jj++; 1570416022c9SBarry Smith } 1571416022c9SBarry Smith 1572d65a2f8fSBarry Smith /* read in other processors and ship out */ 1573416022c9SBarry Smith for ( i=1; i<numtid; i++ ) { 1574416022c9SBarry Smith nz = procsnz[i]; 1575416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1576d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1577416022c9SBarry Smith } 15786ef5f50fSLois Curfman McInnes PETSCFREE(procsnz); 1579416022c9SBarry Smith } 1580d65a2f8fSBarry Smith else { 1581d65a2f8fSBarry Smith /* receive numeric values */ 1582d65a2f8fSBarry Smith vals = (Scalar*) PETSCMALLOC( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1583416022c9SBarry Smith 1584d65a2f8fSBarry Smith /* receive message of values*/ 1585d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1586d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 158702834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1588d65a2f8fSBarry Smith 1589d65a2f8fSBarry Smith /* insert into matrix */ 1590d65a2f8fSBarry Smith jj = rstart; 1591d65a2f8fSBarry Smith smycols = mycols; 1592d65a2f8fSBarry Smith svals = vals; 1593d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1594d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1595d65a2f8fSBarry Smith smycols += ourlens[i]; 1596d65a2f8fSBarry Smith svals += ourlens[i]; 1597d65a2f8fSBarry Smith jj++; 1598d65a2f8fSBarry Smith } 1599d65a2f8fSBarry Smith } 16006ef5f50fSLois Curfman McInnes PETSCFREE(ourlens); PETSCFREE(vals); PETSCFREE(mycols); PETSCFREE(rowners); 1601d65a2f8fSBarry Smith 1602d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1603d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1604416022c9SBarry Smith return 0; 1605416022c9SBarry Smith } 1606