1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28086cff0a6bSPierre Jolivet NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28764cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287742ce410bSJunchao Zhang NULL, 287842ce410bSJunchao Zhang NULL, 2879fe1fc275SAlexander /*155*/ NULL, 2880fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 288136ce4990SBarry Smith 2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2883d71ae5a4SJacob Faibussowitsch { 28842e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28852e8a6d31SBarry Smith 28862e8a6d31SBarry Smith PetscFunctionBegin; 28879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28889566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28902e8a6d31SBarry Smith } 28912e8a6d31SBarry Smith 2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2893d71ae5a4SJacob Faibussowitsch { 28942e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28952e8a6d31SBarry Smith 28962e8a6d31SBarry Smith PetscFunctionBegin; 28979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28989566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29002e8a6d31SBarry Smith } 29018a729477SBarry Smith 2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2903d71ae5a4SJacob Faibussowitsch { 2904ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29055d2a9ed1SStefano Zampini PetscMPIInt size; 2906a23d5eceSKris Buschelman 2907a23d5eceSKris Buschelman PetscFunctionBegin; 2908ad79cf63SBarry Smith if (B->hash_active) { 2909aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2910ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2911ad79cf63SBarry Smith } 29129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2914899cda47SBarry Smith 2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2916eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2917cb7b82ddSBarry Smith #else 29189566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2919cb7b82ddSBarry Smith #endif 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2923cb7b82ddSBarry Smith 29249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2925c508b908SBarry Smith 2926c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2932c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2933cb7b82ddSBarry Smith 2934c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2935ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29369566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29399566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2940c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2941899cda47SBarry Smith 29429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2944526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2945cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294615001458SStefano Zampini B->assembled = PETSC_FALSE; 29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2948a23d5eceSKris Buschelman } 2949a23d5eceSKris Buschelman 2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2951d71ae5a4SJacob Faibussowitsch { 2952ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2953846b4da1SFande Kong 2954846b4da1SFande Kong PetscFunctionBegin; 2955846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29569566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2958eb14dd14SAlex Lindsay if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 2959eb14dd14SAlex Lindsay else { 2960846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2961eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2962846b4da1SFande Kong #else 29639566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2964846b4da1SFande Kong #endif 29659566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 2967eb14dd14SAlex Lindsay } 29689566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2969846b4da1SFande Kong 29709566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29719566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2972846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2973846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2974846b4da1SFande Kong B->assembled = PETSC_FALSE; 29753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2976846b4da1SFande Kong } 2977846b4da1SFande Kong 2978d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2979d71ae5a4SJacob Faibussowitsch { 2980d6dfbf8fSBarry Smith Mat mat; 2981416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2982d6dfbf8fSBarry Smith 29833a40ed3dSBarry Smith PetscFunctionBegin; 2984f4259b30SLisandro Dalcin *newmat = NULL; 29859566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29879566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29889566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2989273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2990e1b6402fSHong Zhang 2991d5f3da31SBarry Smith mat->factortype = matin->factortype; 2992501880eeSStefano Zampini mat->assembled = matin->assembled; 2993e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2994d6dfbf8fSBarry Smith 299517699dbbSLois Curfman McInnes a->size = oldmat->size; 299617699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2997e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2998e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2999501880eeSStefano Zampini a->rowindices = NULL; 3000501880eeSStefano Zampini a->rowvalues = NULL; 3001bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 3002d6dfbf8fSBarry Smith 30039566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 30049566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3005420957c1SBarry Smith if (matin->hash_active) { 3006420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3007420957c1SBarry Smith } else { 3008420957c1SBarry Smith mat->preallocated = matin->preallocated; 30092ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3010aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3011eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3012b1fc9764SSatish Balay #else 30139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3015b1fc9764SSatish Balay #endif 3016501880eeSStefano Zampini } else a->colmap = NULL; 30173f41c07dSBarry Smith if (oldmat->garray) { 3018b1d57f15SBarry Smith PetscInt len; 3019d0f46423SBarry Smith len = oldmat->B->cmap->n; 30209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30219566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3022501880eeSStefano Zampini } else a->garray = NULL; 3023d6dfbf8fSBarry Smith 30240de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30250de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30260de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3027aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3028cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3029cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3030cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3031cff58d65SJunchao Zhang } 30329566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30339566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3034420957c1SBarry Smith } 30359566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30368a729477SBarry Smith *newmat = mat; 30373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30388a729477SBarry Smith } 3039416022c9SBarry Smith 3040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3041d71ae5a4SJacob Faibussowitsch { 304252f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 304352f91c60SVaclav Hapla 304452f91c60SVaclav Hapla PetscFunctionBegin; 304552f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 304652f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3047c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30489566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 305152f91c60SVaclav Hapla if (isbinary) { 30529566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 305352f91c60SVaclav Hapla } else if (ishdf5) { 305452f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30559566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 305652f91c60SVaclav Hapla #else 305752f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 305852f91c60SVaclav Hapla #endif 305952f91c60SVaclav Hapla } else { 306098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 306152f91c60SVaclav Hapla } 30623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306352f91c60SVaclav Hapla } 306452f91c60SVaclav Hapla 3065d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3066d71ae5a4SJacob Faibussowitsch { 30673ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30683ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30693ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30708fb81238SShri Abhyankar 30718fb81238SShri Abhyankar PetscFunctionBegin; 30729566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30738fb81238SShri Abhyankar 30743ea6fe3dSLisandro Dalcin /* read in matrix header */ 30759566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 307608401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30779371c9d4SSatish Balay M = header[1]; 30789371c9d4SSatish Balay N = header[2]; 30799371c9d4SSatish Balay nz = header[3]; 308008401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 308108401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 308208401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 308308ea439dSMark F. Adams 30843ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30859566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30863ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30873ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30883ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30918fb81238SShri Abhyankar 30923ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30939566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3094aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30958fb81238SShri Abhyankar 30963ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 31009371c9d4SSatish Balay rowidxs[0] = 0; 31019371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 31021690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3103462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 310408401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 310538b83642SBarry Smith } 310638b83642SBarry Smith 31073ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31113ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31139566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31149566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31168fb81238SShri Abhyankar } 31178fb81238SShri Abhyankar 31183782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3119ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3120d71ae5a4SJacob Faibussowitsch { 31214aa3045dSJed Brown IS iscol_local; 3122c5e4d11fSDmitry Karpeev PetscBool isstride; 31239725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31243782ecc7SHong Zhang 31253782ecc7SHong Zhang PetscFunctionBegin; 31263782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31283782ecc7SHong Zhang 3129c5e4d11fSDmitry Karpeev if (isstride) { 3130c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31319566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31339566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31349725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3135c5e4d11fSDmitry Karpeev } 31363782ecc7SHong Zhang 31379725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3138c5e4d11fSDmitry Karpeev if (gisstride) { 3139c5e4d11fSDmitry Karpeev PetscInt N; 31409566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31429566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31439566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3144c5e4d11fSDmitry Karpeev } else { 3145c5bfad50SMark F. Adams PetscInt cbs; 31469566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31479566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31489566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3149b79d0421SJed Brown } 31503782ecc7SHong Zhang 31513782ecc7SHong Zhang *isseq = iscol_local; 31523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3153c5e4d11fSDmitry Karpeev } 31548d2139bdSHong Zhang 3155ddfdf956SHong Zhang /* 31569c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31579c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3158ddfdf956SHong Zhang 3159ddfdf956SHong Zhang Input Parameters: 316027430b45SBarry Smith + mat - matrix 316127430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31629c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 316327430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3164ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 316527430b45SBarry Smith 316627430b45SBarry Smith Output Parameters: 316727430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 316827430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 316927430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 317027430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3171ddfdf956SHong Zhang */ 3172835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3173d71ae5a4SJacob Faibussowitsch { 3174040216a4SHong Zhang Vec x, cmap; 3175040216a4SHong Zhang const PetscInt *is_idx; 3176040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31779c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3178040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3179040216a4SHong Zhang Mat B = a->B; 3180040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3181a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31828b3fa1f7SHong Zhang MPI_Comm comm; 31833a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31843782ecc7SHong Zhang 31853782ecc7SHong Zhang PetscFunctionBegin; 31869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31888b3fa1f7SHong Zhang 3189ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31909566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31919566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31929566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31939566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31940a351717SHong Zhang 31959c988bcaSHong Zhang /* Get start indices */ 31969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3197ddfdf956SHong Zhang isstart -= ncols; 31989566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3199040216a4SHong Zhang 32009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 32019566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 32029566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 32039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3204ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32058b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3206ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32079c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32088b3fa1f7SHong Zhang } 32099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32128b3fa1f7SHong Zhang 32139c988bcaSHong Zhang /* Get iscol_d */ 32149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32159566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32169566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3217feb78a15SHong Zhang 32189c988bcaSHong Zhang /* Get isrow_d */ 32199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3220feb78a15SHong Zhang rstart = mat->rmap->rstart; 32219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32239c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3225feb78a15SHong Zhang 32269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32279566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32289566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3229feb78a15SHong Zhang 32309c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3233ddfdf956SHong Zhang 32349566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 323507250d77SHong Zhang 32369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 323864efcef9SHong Zhang 32399c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3240ddfdf956SHong Zhang /* off-process column indices */ 32419c988bcaSHong Zhang count = 0; 32429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3244feb78a15SHong Zhang 32459566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32469566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32478b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3248f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32499c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32501c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32511c645242SHong Zhang count++; 32528b3fa1f7SHong Zhang } 32538b3fa1f7SHong Zhang } 32549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 325607250d77SHong Zhang 32579566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3258b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3259b6d9b4e0SHong Zhang 32609566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32619c988bcaSHong Zhang *garray = cmap1; 32629c988bcaSHong Zhang 32639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3267040216a4SHong Zhang } 3268040216a4SHong Zhang 3269b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3270d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3271d71ae5a4SJacob Faibussowitsch { 3272b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32731fd43edeSHong Zhang Mat M = NULL; 32743b00a383SHong Zhang MPI_Comm comm; 3275b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32763b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3277*c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32783b00a383SHong Zhang 32793b00a383SHong Zhang PetscFunctionBegin; 32809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32813b00a383SHong Zhang 32823b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3283b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32849566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 328528b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32863b00a383SHong Zhang 32879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 328828b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32893b00a383SHong Zhang 32909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 329128b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32923b00a383SHong Zhang 3293b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3294b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32959566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32969566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 329748a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 33003b00a383SHong Zhang 33013b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3302*c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3303b20e2604SHong Zhang PetscInt BsubN; 33043b00a383SHong Zhang 3305b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33069566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33073b00a383SHong Zhang 3308b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33109566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33113b00a383SHong Zhang 3312*c0c276a7Ssdargavi // Compact garray so its not of size Bn 3313*c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3314*c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3315*c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3316*c0c276a7Ssdargavi 33179c988bcaSHong Zhang /* Create submatrix M */ 3318*c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3319*c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3320*c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33213b00a383SHong Zhang 3322b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3323b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33247cfce09cSHong Zhang 33259566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3326b20e2604SHong Zhang n = asub->B->cmap->N; 3327b20e2604SHong Zhang if (BsubN > n) { 3328c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33297cfce09cSHong Zhang const PetscInt *idx; 33309c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33319566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33327cfce09cSHong Zhang 33339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33347cfce09cSHong Zhang j = 0; 33359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3336b20e2604SHong Zhang for (i = 0; i < n; i++) { 33377cfce09cSHong Zhang if (j >= BsubN) break; 33389c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33397cfce09cSHong Zhang 33409c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33417cfce09cSHong Zhang idx_new[i] = idx[j++]; 334298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33437cfce09cSHong Zhang } 33449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33457cfce09cSHong Zhang 33469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33487cfce09cSHong Zhang 3349b20e2604SHong Zhang } else if (BsubN < n) { 335098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3351b20e2604SHong Zhang } 33527cfce09cSHong Zhang 33539566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3354b20e2604SHong Zhang *submat = M; 33553b00a383SHong Zhang 3356e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33579566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33593b00a383SHong Zhang 33609566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33623b00a383SHong Zhang 33639566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33653b00a383SHong Zhang } 33663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33673b00a383SHong Zhang } 33683b00a383SHong Zhang 3369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3370d71ae5a4SJacob Faibussowitsch { 33711358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33723782ecc7SHong Zhang PetscInt csize; 337318e627e3SHong Zhang PetscInt n, i, j, start, end; 33744a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33753782ecc7SHong Zhang MPI_Comm comm; 33763782ecc7SHong Zhang 33773782ecc7SHong Zhang PetscFunctionBegin; 3378bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3379a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33808f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33819566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3382d5761cdaSHong Zhang if (isrow_d) { 3383d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3384d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3385d5761cdaSHong Zhang } else { 33869566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3387d5761cdaSHong Zhang if (iscol_local) { 3388d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3389d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3390d5761cdaSHong Zhang } 3391d5761cdaSHong Zhang } 33928f69fa7bSHong Zhang } else { 3393e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 339418e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33963782ecc7SHong Zhang if (!n) { 339718e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33983782ecc7SHong Zhang } else { 33999566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 34009566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3401ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 34028f69fa7bSHong Zhang } 34033782ecc7SHong Zhang 3404e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 340518e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 34069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 340718e627e3SHong Zhang if (!n) { 340818e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 340918e627e3SHong Zhang } else { 34109566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34119566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 341218e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 341318e627e3SHong Zhang } 341418e627e3SHong Zhang 34159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3416462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 341718e627e3SHong Zhang sameRowDist = tsameDist[0]; 341818e627e3SHong Zhang } 341918e627e3SHong Zhang 342018e627e3SHong Zhang if (sameRowDist) { 3421b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34223b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3425b20e2604SHong Zhang } else { /* sameRowDist */ 34263b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34271358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34281358a193SHong Zhang PetscBool sorted; 34299566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34319566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 343208401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34331358a193SHong Zhang 34349566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34351358a193SHong Zhang if (sorted) { 34361358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34379566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34393782ecc7SHong Zhang } 34401358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 344148c0d076SHong Zhang IS iscol_sub; 34429566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 344348c0d076SHong Zhang if (iscol_sub) { 34449566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 344648c0d076SHong Zhang } 34471358a193SHong Zhang } 34481358a193SHong Zhang } 34491358a193SHong Zhang } 34503782ecc7SHong Zhang 3451bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34523782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 345428b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34553782ecc7SHong Zhang } else { 345648a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34571358a193SHong Zhang } 34583782ecc7SHong Zhang 34599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34609566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34618f69fa7bSHong Zhang 3462b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34639566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3465b79d0421SJed Brown } 34663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34674aa3045dSJed Brown } 34684aa3045dSJed Brown 3469feb78a15SHong Zhang /*@C 347011a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3471feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3472feb78a15SHong Zhang 3473d083f849SBarry Smith Collective 3474feb78a15SHong Zhang 3475feb78a15SHong Zhang Input Parameters: 3476feb78a15SHong Zhang + comm - MPI communicator 3477*c0c276a7Ssdargavi . M - the global row size 3478*c0c276a7Ssdargavi . N - the global column size 3479feb78a15SHong Zhang . A - "diagonal" portion of matrix 3480*c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3481*c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3482feb78a15SHong Zhang 3483feb78a15SHong Zhang Output Parameter: 34842ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 348527430b45SBarry Smith 3486feb78a15SHong Zhang Level: advanced 3487feb78a15SHong Zhang 3488feb78a15SHong Zhang Notes: 348911a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 349011a5261eSBarry Smith 3491*c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3492feb78a15SHong Zhang 34931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3494feb78a15SHong Zhang @*/ 3495*c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3496d71ae5a4SJacob Faibussowitsch { 3497*c0c276a7Ssdargavi PetscInt m, n; 34984ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3499feb78a15SHong Zhang 3500feb78a15SHong Zhang PetscFunctionBegin; 35019566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35029566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 350308401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 350437a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3505feb78a15SHong Zhang 3506*c0c276a7Ssdargavi PetscCall(MatSetSizes(*mat, m, n, M, N)); 35074ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35084ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35094ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35104ab4d6f4SRichard Tran Mills 351137a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3512feb78a15SHong Zhang 35139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35149566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3515*c0c276a7Ssdargavi PetscCall(MatSetMPIAIJWithSplitSeqAIJ(*mat, A, B, garray)); 3516*c0c276a7Ssdargavi PetscFunctionReturn(PETSC_SUCCESS); 3517feb78a15SHong Zhang } 3518feb78a15SHong Zhang 3519*c0c276a7Ssdargavi /* 3520*c0c276a7Ssdargavi MatSetMPIAIJWithSplitSeqAIJ - Set the diag and offdiag matrices of a `MATMPIAIJ` matrix. 3521*c0c276a7Ssdargavi It is similar to `MatCreateMPIAIJWithSplitArrays()`. This routine allows passing in 3522*c0c276a7Ssdargavi B with local indices and the correct size, along with the accompanying 3523*c0c276a7Ssdargavi garray, hence skipping compactification 3524d5761cdaSHong Zhang 3525*c0c276a7Ssdargavi Collective 3526d5761cdaSHong Zhang 3527*c0c276a7Ssdargavi Input Parameters: 3528*c0c276a7Ssdargavi + mat - the MATMPIAIJ matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 3529*c0c276a7Ssdargavi . A - the diag matrix using local col ids 3530*c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3531*c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3532d5761cdaSHong Zhang 3533*c0c276a7Ssdargavi Output Parameter: 3534*c0c276a7Ssdargavi . mat - the updated `MATMPIAIJ` matrix 3535feb78a15SHong Zhang 3536*c0c276a7Ssdargavi Level: advanced 3537*c0c276a7Ssdargavi 3538*c0c276a7Ssdargavi Notes: 3539*c0c276a7Ssdargavi See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 3540*c0c276a7Ssdargavi 3541*c0c276a7Ssdargavi `A` and `B` become part of output mat. The user cannot use `A` and `B` anymore. 3542*c0c276a7Ssdargavi 3543*c0c276a7Ssdargavi .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3544*c0c276a7Ssdargavi */ 3545*c0c276a7Ssdargavi PETSC_INTERN PetscErrorCode MatSetMPIAIJWithSplitSeqAIJ(Mat mat, Mat A, Mat B, PetscInt *garray) 3546*c0c276a7Ssdargavi { 3547*c0c276a7Ssdargavi PetscFunctionBegin; 3548*c0c276a7Ssdargavi Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 3549*c0c276a7Ssdargavi PetscInt m, n, M, N, Am, An, Bm, Bn; 3550*c0c276a7Ssdargavi 3551*c0c276a7Ssdargavi PetscCall(MatGetSize(mat, &M, &N)); 3552*c0c276a7Ssdargavi PetscCall(MatGetLocalSize(mat, &m, &n)); 3553*c0c276a7Ssdargavi PetscCall(MatGetLocalSize(A, &Am, &An)); 3554*c0c276a7Ssdargavi PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 3555*c0c276a7Ssdargavi 3556*c0c276a7Ssdargavi PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 3557*c0c276a7Ssdargavi PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 3558*c0c276a7Ssdargavi PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 3559*c0c276a7Ssdargavi mpiaij->A = A; 3560*c0c276a7Ssdargavi mpiaij->B = B; 3561*c0c276a7Ssdargavi mpiaij->garray = garray; 3562*c0c276a7Ssdargavi 3563*c0c276a7Ssdargavi mat->preallocated = PETSC_TRUE; 3564*c0c276a7Ssdargavi mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3565*c0c276a7Ssdargavi 3566*c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3567*c0c276a7Ssdargavi PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 3568*c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3569*c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3570*c0c276a7Ssdargavi */ 3571*c0c276a7Ssdargavi PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 3572*c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3573*c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3575feb78a15SHong Zhang } 3576feb78a15SHong Zhang 3577ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35784aa3045dSJed Brown 3579d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3580d71ae5a4SJacob Faibussowitsch { 358198b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 358285f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 358398b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35841fd43edeSHong Zhang Mat M, Msub, B = a->B; 358598b658c4SHong Zhang MatScalar *aa; 358600e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3587a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 358898b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 358998b658c4SHong Zhang IS iscol_sub, iscmap; 359098b658c4SHong Zhang const PetscInt *is_idx, *cmap; 359118e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3592a31a438cSHong Zhang MPI_Comm comm; 35937e2c5f70SBarry Smith 3594a0ff6018SBarry Smith PetscFunctionBegin; 35959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3596d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35979566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 359828b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3600d5761cdaSHong Zhang 36019566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 360228b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3603d5761cdaSHong Zhang 36049566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 360528b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3606d5761cdaSHong Zhang 36079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3608d5761cdaSHong Zhang 3609d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 36103b00a383SHong Zhang PetscBool flg; 36113b00a383SHong Zhang 36129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 36139566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3614bcae8d28SHong Zhang 36153b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3616366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 36179566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3618366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3619462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3620366a327dSHong Zhang if (allcolumns) { 3621366a327dSHong Zhang iscol_sub = iscol_local; 36229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 36239566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3624366a327dSHong Zhang 36253b00a383SHong Zhang } else { 36261358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3627244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 36289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36318d2139bdSHong Zhang count = 0; 3632a31a438cSHong Zhang k = 0; 3633a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3634a31a438cSHong Zhang j = is_idx[i]; 3635a31a438cSHong Zhang if (j >= cstart && j < cend) { 3636a31a438cSHong Zhang /* diagonal part of mat */ 36378d2139bdSHong Zhang idx[count] = j; 3638366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36394a3daf6eSHong Zhang } else if (Bn) { 3640a31a438cSHong Zhang /* off-diagonal part of mat */ 3641a31a438cSHong Zhang if (j == garray[k]) { 36428d2139bdSHong Zhang idx[count] = j; 3643a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3644a31a438cSHong Zhang } else if (j > garray[k]) { 3645a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3646a31a438cSHong Zhang if (j == garray[k]) { 3647a31a438cSHong Zhang idx[count] = j; 3648a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36498d2139bdSHong Zhang } 36508d2139bdSHong Zhang } 36518d2139bdSHong Zhang } 36528d2139bdSHong Zhang } 36539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36548d2139bdSHong Zhang 36559566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36569566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36579566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3658b6d9b4e0SHong Zhang 36599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3660a31a438cSHong Zhang } 36618b3fa1f7SHong Zhang 36623b00a383SHong Zhang /* (3) Create sequential Msub */ 36639566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3664d5761cdaSHong Zhang } 36658d2139bdSHong Zhang 36669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 366757508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 366898b658c4SHong Zhang ii = aij->i; 36699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3670a0ff6018SBarry Smith 3671a0ff6018SBarry Smith /* 3672a0ff6018SBarry Smith m - number of local rows 3673a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3674a0ff6018SBarry Smith rstart - first row in new global matrix generated 3675a0ff6018SBarry Smith */ 36769566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 367798b658c4SHong Zhang 36783b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36793b00a383SHong Zhang /* (4) Create parallel newmat */ 368098b658c4SHong Zhang PetscMPIInt rank, size; 3681bcae8d28SHong Zhang PetscInt csize; 368298b658c4SHong Zhang 36839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 368500e6dbe6SBarry Smith 3686a0ff6018SBarry Smith /* 368700e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 368800e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3689a0ff6018SBarry Smith */ 369000e6dbe6SBarry Smith 369100e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36936a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36949566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3695a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3696e2c4fddaSBarry Smith nlocal = m; 36976a6a5d1dSBarry Smith } else { 3698a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3699ab50ec6bSBarry Smith } 3700ab50ec6bSBarry Smith } else { 37016a6a5d1dSBarry Smith nlocal = csize; 37026a6a5d1dSBarry Smith } 37039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 370400e6dbe6SBarry Smith rstart = rend - nlocal; 3705aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 370600e6dbe6SBarry Smith 370700e6dbe6SBarry Smith /* next, compute all the lengths */ 370898b658c4SHong Zhang jj = aij->j; 37099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 371000e6dbe6SBarry Smith olens = dlens + m; 371100e6dbe6SBarry Smith for (i = 0; i < m; i++) { 371200e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 371300e6dbe6SBarry Smith olen = 0; 371400e6dbe6SBarry Smith dlen = 0; 371500e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 371615b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 371700e6dbe6SBarry Smith else dlen++; 371800e6dbe6SBarry Smith jj++; 371900e6dbe6SBarry Smith } 372000e6dbe6SBarry Smith olens[i] = olen; 372100e6dbe6SBarry Smith dlens[i] = dlen; 372200e6dbe6SBarry Smith } 3723b6d9b4e0SHong Zhang 37249566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 37259566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 372698b658c4SHong Zhang 37279566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 37289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37299566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37309566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37319566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37329566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3733d5761cdaSHong Zhang 3734d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3735a0ff6018SBarry Smith M = *newmat; 37369566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 373708401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37389566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3739c48de900SBarry Smith /* 3740c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3741c48de900SBarry Smith rather than the slower MatSetValues(). 3742c48de900SBarry Smith */ 3743c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3744c48de900SBarry Smith M->assembled = PETSC_FALSE; 3745a0ff6018SBarry Smith } 3746548ecf4dSHong Zhang 37473b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37499566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 375098b658c4SHong Zhang 375198b658c4SHong Zhang jj = aij->j; 37529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3753a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3754a0ff6018SBarry Smith row = rstart + i; 375500e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 375615b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37579566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37589371c9d4SSatish Balay jj += nz; 37599371c9d4SSatish Balay aa += nz; 3760a0ff6018SBarry Smith } 37619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3763a0ff6018SBarry Smith 37649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3766fee21e36SBarry Smith 37679566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 376898b658c4SHong Zhang 376998b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3770fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37713b00a383SHong Zhang *newmat = M; 3772f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 377498b658c4SHong Zhang 3775f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 377798b658c4SHong Zhang 3778f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37799566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3780bcae8d28SHong Zhang 3781bcae8d28SHong Zhang if (iscol_local) { 3782f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37839566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3784bcae8d28SHong Zhang } 378598b658c4SHong Zhang } 37863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3787a0ff6018SBarry Smith } 3788273d9f13SBarry Smith 3789df40acb1SHong Zhang /* 3790df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3791df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3792df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3793df40acb1SHong Zhang 379411a5261eSBarry Smith This requires a sequential iscol with all indices. 3795df40acb1SHong Zhang */ 3796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3797d71ae5a4SJacob Faibussowitsch { 3798df40acb1SHong Zhang PetscMPIInt rank, size; 3799df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3800df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3801df40acb1SHong Zhang Mat M, Mreuse; 380298b658c4SHong Zhang MatScalar *aa, *vwork; 3803df40acb1SHong Zhang MPI_Comm comm; 3804df40acb1SHong Zhang Mat_SeqAIJ *aij; 38050b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3806df40acb1SHong Zhang 3807df40acb1SHong Zhang PetscFunctionBegin; 38089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 38099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 38109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3811df40acb1SHong Zhang 38120b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 38139566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 38149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 38150b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3816462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 38170b27a90eSHong Zhang 3818df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 38199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 382028b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 38219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3822df40acb1SHong Zhang } else { 38239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3824df40acb1SHong Zhang } 3825df40acb1SHong Zhang 3826df40acb1SHong Zhang /* 3827df40acb1SHong Zhang m - number of local rows 3828df40acb1SHong Zhang n - number of columns (same on all processors) 3829df40acb1SHong Zhang rstart - first row in new global matrix generated 3830df40acb1SHong Zhang */ 38319566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3833df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 383457508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3835df40acb1SHong Zhang ii = aij->i; 3836df40acb1SHong Zhang jj = aij->j; 3837df40acb1SHong Zhang 3838df40acb1SHong Zhang /* 3839df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3840df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3841df40acb1SHong Zhang */ 3842df40acb1SHong Zhang 3843df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3844df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38459566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3846df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3847df40acb1SHong Zhang nlocal = m; 3848df40acb1SHong Zhang } else { 3849df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3850df40acb1SHong Zhang } 3851df40acb1SHong Zhang } else { 3852df40acb1SHong Zhang nlocal = csize; 3853df40acb1SHong Zhang } 38549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3855df40acb1SHong Zhang rstart = rend - nlocal; 3856aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3857df40acb1SHong Zhang 3858df40acb1SHong Zhang /* next, compute all the lengths */ 38599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3860df40acb1SHong Zhang olens = dlens + m; 3861df40acb1SHong Zhang for (i = 0; i < m; i++) { 3862df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3863df40acb1SHong Zhang olen = 0; 3864df40acb1SHong Zhang dlen = 0; 3865df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3866df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3867df40acb1SHong Zhang else dlen++; 3868df40acb1SHong Zhang jj++; 3869df40acb1SHong Zhang } 3870df40acb1SHong Zhang olens[i] = olen; 3871df40acb1SHong Zhang dlens[i] = dlen; 3872df40acb1SHong Zhang } 38739566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38769566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38779566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38789566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3879df40acb1SHong Zhang } else { 3880df40acb1SHong Zhang PetscInt ml, nl; 3881df40acb1SHong Zhang 3882df40acb1SHong Zhang M = *newmat; 38839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 388408401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38859566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3886df40acb1SHong Zhang /* 3887df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3888df40acb1SHong Zhang rather than the slower MatSetValues(). 3889df40acb1SHong Zhang */ 3890df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3891df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3892df40acb1SHong Zhang } 38939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 389457508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3895df40acb1SHong Zhang ii = aij->i; 3896df40acb1SHong Zhang jj = aij->j; 38972e5835c6SStefano Zampini 38982e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3900df40acb1SHong Zhang for (i = 0; i < m; i++) { 3901df40acb1SHong Zhang row = rstart + i; 3902df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 39039371c9d4SSatish Balay cwork = jj; 39048e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 39059371c9d4SSatish Balay vwork = aa; 39068e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 39079566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3908df40acb1SHong Zhang } 39099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3910df40acb1SHong Zhang 39119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 39129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3913df40acb1SHong Zhang *newmat = M; 3914df40acb1SHong Zhang 3915df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3916df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 39179566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 39189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3919df40acb1SHong Zhang } 39203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3921df40acb1SHong Zhang } 3922df40acb1SHong Zhang 3923ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3924d71ae5a4SJacob Faibussowitsch { 39256a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 39269f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3927ccd8e176SBarry Smith const PetscInt *JJ; 3928eeb24464SBarry Smith PetscBool nooffprocentries; 39296a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3930ccd8e176SBarry Smith 3931ccd8e176SBarry Smith PetscFunctionBegin; 39329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3934d0f46423SBarry Smith m = B->rmap->n; 3935d0f46423SBarry Smith cstart = B->cmap->rstart; 3936d0f46423SBarry Smith cend = B->cmap->rend; 3937d0f46423SBarry Smith rstart = B->rmap->rstart; 39389f0612e4SBarry Smith irstart = Ii[0]; 3939899cda47SBarry Smith 39409566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3941ccd8e176SBarry Smith 394276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39438f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3944ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39459f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 394608401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 394708401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 394808401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3949ecc77c7aSBarry Smith } 395076bd3646SJed Brown } 3951ecc77c7aSBarry Smith 39528f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3953b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39549f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3955ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3956ccd8e176SBarry Smith d = 0; 39570daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39580daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3959ccd8e176SBarry Smith } 3960ccd8e176SBarry Smith d_nnz[i] = d; 3961ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3962ccd8e176SBarry Smith } 39639566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39649566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3965ccd8e176SBarry Smith 39668f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3967ccd8e176SBarry Smith ii = i + rstart; 39689f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3969ccd8e176SBarry Smith } 3970eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3971eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3974eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3975ccd8e176SBarry Smith 39766a3d2595SBarry Smith /* count number of entries below block diagonal */ 39776a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39786a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39796a3d2595SBarry Smith Aij->ld = ld; 39806a3d2595SBarry Smith for (i = 0; i < m; i++) { 39816a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39826a3d2595SBarry Smith j = 0; 3983ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39846a3d2595SBarry Smith ld[i] = j; 3985720a2405SPierre Jolivet if (J) J += nnz; 39866a3d2595SBarry Smith } 39876a3d2595SBarry Smith 39889566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3990ccd8e176SBarry Smith } 3991ccd8e176SBarry Smith 39921eea217eSSatish Balay /*@ 399311a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3994ccd8e176SBarry Smith (the default parallel PETSc format). 3995ccd8e176SBarry Smith 3996d083f849SBarry Smith Collective 3997ccd8e176SBarry Smith 3998ccd8e176SBarry Smith Input Parameters: 3999a1661176SMatthew Knepley + B - the matrix 4000d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 4001d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 4002ccd8e176SBarry Smith - v - optional values in the matrix 4003ccd8e176SBarry Smith 4004ccd8e176SBarry Smith Level: developer 4005ccd8e176SBarry Smith 400612251496SSatish Balay Notes: 40072ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 40082ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 400911a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 401012251496SSatish Balay 40112ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 401212251496SSatish Balay 4013a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 4014a4bd8bc0SBarry Smith 4015a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 4016a4bd8bc0SBarry Smith 4017a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 4018a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4019a4bd8bc0SBarry Smith 402012251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 402112251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4022c5e4d11fSDmitry Karpeev as shown 402327430b45SBarry Smith .vb 402427430b45SBarry Smith 1 0 0 402527430b45SBarry Smith 2 0 3 P0 402627430b45SBarry Smith ------- 402727430b45SBarry Smith 4 5 6 P1 402827430b45SBarry Smith 402927430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 403027430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 403127430b45SBarry Smith j = {0,0,2} [size = 3] 403227430b45SBarry Smith v = {1,2,3} [size = 3] 403327430b45SBarry Smith 403427430b45SBarry Smith Process1 [P1] rows_owned=[2] 403527430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 403627430b45SBarry Smith j = {0,1,2} [size = 3] 403727430b45SBarry Smith v = {4,5,6} [size = 3] 403827430b45SBarry Smith .ve 403912251496SSatish Balay 4040fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4041a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4042ccd8e176SBarry Smith @*/ 4043d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4044d71ae5a4SJacob Faibussowitsch { 4045ccd8e176SBarry Smith PetscFunctionBegin; 4046cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4048ccd8e176SBarry Smith } 4049ccd8e176SBarry Smith 40505d83a8b1SBarry Smith /*@ 405111a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4052273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4053273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 405420f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4055273d9f13SBarry Smith 4056d083f849SBarry Smith Collective 4057273d9f13SBarry Smith 4058273d9f13SBarry Smith Input Parameters: 40591c4f3114SJed Brown + B - the matrix 4060273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4061273d9f13SBarry Smith (same value is used for all local rows) 4062273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4063273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40642ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4065273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40663287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40673287b5eaSJed Brown the diagonal entry even if it is zero. 4068273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4069273d9f13SBarry Smith submatrix (same value is used for all local rows). 4070273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4071273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40722ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4073273d9f13SBarry Smith structure. The size of this array is equal to the number 4074273d9f13SBarry Smith of local rows, i.e 'm'. 4075273d9f13SBarry Smith 40762920cce0SJacob Faibussowitsch Example Usage: 407727430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 407827430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 407927430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 408027430b45SBarry Smith as follows 408127430b45SBarry Smith 408227430b45SBarry Smith .vb 408327430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 408427430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 408527430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 408627430b45SBarry Smith ------------------------------------- 408727430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 408827430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 408927430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 409027430b45SBarry Smith ------------------------------------- 409127430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 409227430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 409327430b45SBarry Smith .ve 409427430b45SBarry Smith 409527430b45SBarry Smith This can be represented as a collection of submatrices as 409627430b45SBarry Smith .vb 409727430b45SBarry Smith A B C 409827430b45SBarry Smith D E F 409927430b45SBarry Smith G H I 410027430b45SBarry Smith .ve 410127430b45SBarry Smith 410227430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 410327430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 410427430b45SBarry Smith 410527430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 410627430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 410727430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 410827430b45SBarry Smith 410927430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 411027430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 411127430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 411227430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 411327430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 41145163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 411527430b45SBarry Smith 411620f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 41175163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 41185163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 41195163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 41205163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 412120f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 412227430b45SBarry Smith .vb 412327430b45SBarry Smith proc0 dnz = 2, o_nz = 2 412427430b45SBarry Smith proc1 dnz = 3, o_nz = 2 412527430b45SBarry Smith proc2 dnz = 1, o_nz = 4 412627430b45SBarry Smith .ve 412720f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 412827430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 412927430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 413027430b45SBarry Smith 34 values. 413127430b45SBarry Smith 413220f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 413327430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 413420f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 413527430b45SBarry Smith .vb 413627430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 413727430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 413827430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 413927430b45SBarry Smith .ve 414027430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 414127430b45SBarry Smith hence pre-allocation is perfect. 414227430b45SBarry Smith 414327430b45SBarry Smith Level: intermediate 414427430b45SBarry Smith 414527430b45SBarry Smith Notes: 414649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 414749a6f317SBarry Smith 414827430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41490598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4150651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4151273d9f13SBarry Smith 4152273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4153273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4154273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4155273d9f13SBarry Smith 4156273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4157a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4158a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4159a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4160a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4161a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4162a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4163a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4164a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4165273d9f13SBarry Smith 41662ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4167273d9f13SBarry Smith 416827430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4169aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 417027430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4171aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4172aa95bbe8SBarry Smith 41731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4174a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4175273d9f13SBarry Smith @*/ 4176d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4177d71ae5a4SJacob Faibussowitsch { 4178273d9f13SBarry Smith PetscFunctionBegin; 41796ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41806ba663aaSJed Brown PetscValidType(B, 1); 4181cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4183273d9f13SBarry Smith } 4184273d9f13SBarry Smith 418558d36128SBarry Smith /*@ 418611a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41878f8f2f0dSBarry Smith CSR format for the local rows. 41882fb0ec9aSBarry Smith 4189d083f849SBarry Smith Collective 41902fb0ec9aSBarry Smith 41912fb0ec9aSBarry Smith Input Parameters: 41922fb0ec9aSBarry Smith + comm - MPI communicator 419311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41942fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4195d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4196d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4197d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4198d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41995693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 42005693b835SJunchao Zhang . j - global column indices 4201f1f2ae84SBarry Smith - a - optional matrix values 42022fb0ec9aSBarry Smith 42032fb0ec9aSBarry Smith Output Parameter: 42042fb0ec9aSBarry Smith . mat - the matrix 420503bfb495SBarry Smith 42062fb0ec9aSBarry Smith Level: intermediate 42072fb0ec9aSBarry Smith 42082fb0ec9aSBarry Smith Notes: 42092ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4210d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4211d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 42122fb0ec9aSBarry Smith 42132ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 421412251496SSatish Balay 42155693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4216a4bd8bc0SBarry Smith 42175693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4218a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4219a4bd8bc0SBarry Smith 422012251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4221d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4222c5e4d11fSDmitry Karpeev as shown 42232ef1f0ffSBarry Smith .vb 42242ef1f0ffSBarry Smith 1 0 0 42252ef1f0ffSBarry Smith 2 0 3 P0 42262ef1f0ffSBarry Smith ------- 42272ef1f0ffSBarry Smith 4 5 6 P1 42288f8f2f0dSBarry Smith 42292ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42302ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42312ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42322ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42332fb0ec9aSBarry Smith 42342ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42352ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42362ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42372ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42382ef1f0ffSBarry Smith .ve 42392ef1f0ffSBarry Smith 4240d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42415693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42422fb0ec9aSBarry Smith @*/ 4243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4244d71ae5a4SJacob Faibussowitsch { 42452fb0ec9aSBarry Smith PetscFunctionBegin; 424608401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 424708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42509566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42519566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42529566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42542fb0ec9aSBarry Smith } 42552fb0ec9aSBarry Smith 42568f8f2f0dSBarry Smith /*@ 425711a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42582ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42592ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42606a3d2595SBarry Smith 42616a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42628f8f2f0dSBarry Smith 42638f8f2f0dSBarry Smith Collective 42648f8f2f0dSBarry Smith 42658f8f2f0dSBarry Smith Input Parameters: 42668f8f2f0dSBarry Smith + mat - the matrix 426711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42688f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 426911a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42708f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 427111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 427211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42738f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42748f8f2f0dSBarry Smith . J - column indices 42758f8f2f0dSBarry Smith - v - matrix values 42768f8f2f0dSBarry Smith 42772ef1f0ffSBarry Smith Level: deprecated 42788f8f2f0dSBarry Smith 42791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4280a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42818f8f2f0dSBarry Smith @*/ 4282d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4283d71ae5a4SJacob Faibussowitsch { 42846a3d2595SBarry Smith PetscInt nnz, i; 42858f8f2f0dSBarry Smith PetscBool nooffprocentries; 42868f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4287fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4288fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42898f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42906a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42916a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42928f8f2f0dSBarry Smith 42938f8f2f0dSBarry Smith PetscFunctionBegin; 4294aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 429508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 429608401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 429708401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42988f8f2f0dSBarry Smith 42999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43018f8f2f0dSBarry Smith 43028f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 43034c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 43044c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 43054c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 43064c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 43074c17f1ccSBarry Smith } 43084c17f1ccSBarry Smith } 43098f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 43108f8f2f0dSBarry Smith Iii = Ii[i]; 43118f8f2f0dSBarry Smith ldi = ld[i]; 43128f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 43139566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 43149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43168f8f2f0dSBarry Smith ad += md; 43178f8f2f0dSBarry Smith ao += nnz - md; 43188f8f2f0dSBarry Smith } 43198f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 43208f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 43219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43239566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43249566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43259566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43288f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43308f8f2f0dSBarry Smith } 43318f8f2f0dSBarry Smith 43326a3d2595SBarry Smith /*@ 433311a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43346a3d2595SBarry Smith 43356a3d2595SBarry Smith Collective 43366a3d2595SBarry Smith 43376a3d2595SBarry Smith Input Parameters: 43386a3d2595SBarry Smith + mat - the matrix 43396a3d2595SBarry Smith - v - matrix values, stored by row 43406a3d2595SBarry Smith 43416a3d2595SBarry Smith Level: intermediate 43426a3d2595SBarry Smith 4343a4bd8bc0SBarry Smith Notes: 43446a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43456a3d2595SBarry Smith 4346a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4347a4bd8bc0SBarry Smith 43481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4349a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43506a3d2595SBarry Smith @*/ 4351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4352d71ae5a4SJacob Faibussowitsch { 43536a3d2595SBarry Smith PetscInt nnz, i, m; 43546a3d2595SBarry Smith PetscBool nooffprocentries; 43556a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43566a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43576a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43586a3d2595SBarry Smith PetscScalar *ad, *ao; 43596a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43606a3d2595SBarry Smith PetscInt ldi, Iii, md; 43616a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43626a3d2595SBarry Smith 43636a3d2595SBarry Smith PetscFunctionBegin; 43646a3d2595SBarry Smith m = mat->rmap->n; 43656a3d2595SBarry Smith 43666a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43676a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43686a3d2595SBarry Smith Iii = 0; 43696a3d2595SBarry Smith for (i = 0; i < m; i++) { 43706a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43716a3d2595SBarry Smith ldi = ld[i]; 43726a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43736a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43746a3d2595SBarry Smith ad += md; 4375810441c8SPierre Jolivet if (ao) { 4376810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4377810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43786a3d2595SBarry Smith ao += nnz - md; 4379810441c8SPierre Jolivet } 43806a3d2595SBarry Smith Iii += nnz; 43816a3d2595SBarry Smith } 43826a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43836a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43846a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43856a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43866a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43876a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43886a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43896a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43906a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43916a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43936a3d2595SBarry Smith } 43946a3d2595SBarry Smith 43955d83a8b1SBarry Smith /*@ 439611a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4397273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4398273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43992ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4400273d9f13SBarry Smith 4401d083f849SBarry Smith Collective 4402273d9f13SBarry Smith 4403273d9f13SBarry Smith Input Parameters: 4404273d9f13SBarry Smith + comm - MPI communicator 440511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4406273d9f13SBarry Smith This value should be the same as the local size used in creating the 4407273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4408273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 440945f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4410273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 441111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 441211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4413273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4414273d9f13SBarry Smith (same value is used for all local rows) 4415273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4416273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 44172ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4418273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4419273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4420273d9f13SBarry Smith submatrix (same value is used for all local rows). 4421273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4422273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 44232ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4424273d9f13SBarry Smith structure. The size of this array is equal to the number 4425273d9f13SBarry Smith of local rows, i.e 'm'. 4426273d9f13SBarry Smith 4427273d9f13SBarry Smith Output Parameter: 4428273d9f13SBarry Smith . A - the matrix 4429273d9f13SBarry Smith 443027430b45SBarry Smith Options Database Keys: 443127430b45SBarry Smith + -mat_no_inode - Do not use inodes 443227430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 443327430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4434727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4435727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 443627430b45SBarry Smith 44372ef1f0ffSBarry Smith Level: intermediate 44382ef1f0ffSBarry Smith 443927430b45SBarry Smith Notes: 444077433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4441f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 444211a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4443175b88e8SBarry Smith 444449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 444549a6f317SBarry Smith 44462ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44472ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4448273d9f13SBarry Smith storage requirements for this matrix. 4449273d9f13SBarry Smith 445011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4451273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4452273d9f13SBarry Smith that argument. 4453273d9f13SBarry Smith 4454727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4455727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4456727bdf9bSBarry Smith 4457273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4458273d9f13SBarry Smith (possibly both). 4459273d9f13SBarry Smith 446033a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4461727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4462727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4463727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 446433a7c187SSatish Balay values corresponding to [m x N] submatrix. 4465273d9f13SBarry Smith 446633a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 446733a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4468df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 446933a7c187SSatish Balay 447033a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 447133a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 447233a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 447333a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 447433a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 447533a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44760b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44770b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 447833a7c187SSatish Balay 447933a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 448033a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 448133a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 448233a7c187SSatish Balay local matrix (a rectangular submatrix). 4483273d9f13SBarry Smith 44842ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4485273d9f13SBarry Smith 448697d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44872ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4488da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4489da57b5cdSKarl Rupp .vb 44902ef1f0ffSBarry Smith MatCreate(..., &A); 44912ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44922ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44932ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4494da57b5cdSKarl Rupp .ve 449597d05335SKris Buschelman 4496273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4497273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4498273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4499273d9f13SBarry Smith 45002920cce0SJacob Faibussowitsch Example Usage: 4501273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4502273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4503273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4504efc377ccSKarl Rupp as follows 4505273d9f13SBarry Smith 4506273d9f13SBarry Smith .vb 4507273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4508273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4509273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4510273d9f13SBarry Smith ------------------------------------- 4511273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4512273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4513273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4514273d9f13SBarry Smith ------------------------------------- 4515273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4516273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4517273d9f13SBarry Smith .ve 4518273d9f13SBarry Smith 4519da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4520273d9f13SBarry Smith 4521273d9f13SBarry Smith .vb 4522273d9f13SBarry Smith A B C 4523273d9f13SBarry Smith D E F 4524273d9f13SBarry Smith G H I 4525273d9f13SBarry Smith .ve 4526273d9f13SBarry Smith 4527273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4528273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4529273d9f13SBarry Smith 4530273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4531273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4532273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4533273d9f13SBarry Smith 4534273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4535273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4536273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4537273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 453827430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45395163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4540273d9f13SBarry Smith 45412ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45425163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45435163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45445163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45455163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45462ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4547273d9f13SBarry Smith .vb 454827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 454927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 455027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4551273d9f13SBarry Smith .ve 45522ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4553273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4554273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4555273d9f13SBarry Smith 34 values. 4556273d9f13SBarry Smith 45572ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4558a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4559da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4560273d9f13SBarry Smith .vb 456127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 456227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 456327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4564273d9f13SBarry Smith .ve 4565273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4566273d9f13SBarry Smith hence pre-allocation is perfect. 4567273d9f13SBarry Smith 45681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4569727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4570727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4571273d9f13SBarry Smith @*/ 4572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4573d71ae5a4SJacob Faibussowitsch { 4574b1d57f15SBarry Smith PetscMPIInt size; 4575273d9f13SBarry Smith 4576273d9f13SBarry Smith PetscFunctionBegin; 45779566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4580273d9f13SBarry Smith if (size > 1) { 45819566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45829566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4583273d9f13SBarry Smith } else { 45849566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4586273d9f13SBarry Smith } 45873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4588273d9f13SBarry Smith } 4589195d93cdSBarry Smith 45900b98dbb4SBarry Smith /*MC 45910b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45920b98dbb4SBarry Smith 45930b98dbb4SBarry Smith Synopsis: 45940b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45950b98dbb4SBarry Smith 45960b98dbb4SBarry Smith Not Collective 45970b98dbb4SBarry Smith 45980b98dbb4SBarry Smith Input Parameter: 45990b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 46000b98dbb4SBarry Smith 46010b98dbb4SBarry Smith Output Parameters: 46020b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 46034cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 46042ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 46050b98dbb4SBarry Smith - ierr - error code 46060b98dbb4SBarry Smith 46070b98dbb4SBarry Smith Level: advanced 46080b98dbb4SBarry Smith 46090b98dbb4SBarry Smith Note: 46100b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 46110b98dbb4SBarry Smith 46121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 46130b98dbb4SBarry Smith M*/ 46140b98dbb4SBarry Smith 46150b98dbb4SBarry Smith /*MC 46160b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 46170b98dbb4SBarry Smith 46180b98dbb4SBarry Smith Synopsis: 46190b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 46200b98dbb4SBarry Smith 46210b98dbb4SBarry Smith Not Collective 46220b98dbb4SBarry Smith 46230b98dbb4SBarry Smith Input Parameters: 46240b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 46250b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 46264cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 46272ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 46280b98dbb4SBarry Smith - ierr - error code 46290b98dbb4SBarry Smith 46300b98dbb4SBarry Smith Level: advanced 46310b98dbb4SBarry Smith 46321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 46330b98dbb4SBarry Smith M*/ 46340b98dbb4SBarry Smith 4635127ca0efSMatthew Knepley /*@C 46360ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4637127ca0efSMatthew Knepley 46382ef1f0ffSBarry Smith Not Collective 4639127ca0efSMatthew Knepley 4640127ca0efSMatthew Knepley Input Parameter: 464111a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4642127ca0efSMatthew Knepley 4643127ca0efSMatthew Knepley Output Parameters: 464411a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 464511a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46462ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4647127ca0efSMatthew Knepley 46480ab4885dSBarry Smith Level: intermediate 46490ab4885dSBarry Smith 465011a5261eSBarry Smith Note: 46512ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46522ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46532ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4654127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4655127ca0efSMatthew Knepley 4656fe59aa6dSJacob Faibussowitsch Fortran Notes: 46570ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4658127ca0efSMatthew Knepley 4659fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4660127ca0efSMatthew Knepley @*/ 4661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4662d71ae5a4SJacob Faibussowitsch { 4663195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 466404cf37c7SBarry Smith PetscBool flg; 4665b1d57f15SBarry Smith 4666195d93cdSBarry Smith PetscFunctionBegin; 46679566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 466828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 466921e72a00SBarry Smith if (Ad) *Ad = a->A; 467021e72a00SBarry Smith if (Ao) *Ao = a->B; 467121e72a00SBarry Smith if (colmap) *colmap = a->garray; 46723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4673195d93cdSBarry Smith } 4674a2243be0SBarry Smith 4675d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4676d71ae5a4SJacob Faibussowitsch { 4677110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46789b8102ccSHong Zhang PetscInt *indx; 4679110bb6e1SHong Zhang PetscScalar *values; 4680421ddf4dSJunchao Zhang MatType rootType; 46819b8102ccSHong Zhang 46829b8102ccSHong Zhang PetscFunctionBegin; 46839566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4684110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4685110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4686110bb6e1SHong Zhang 468748a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4688a22543b6SHong Zhang /* Check sum(n) = N */ 4689462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 469008401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4691a22543b6SHong Zhang 46929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46939b8102ccSHong Zhang rstart -= m; 46949b8102ccSHong Zhang 4695d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46969b8102ccSHong Zhang for (i = 0; i < m; i++) { 46979566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46989566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46999566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 47009b8102ccSHong Zhang } 47019b8102ccSHong Zhang 47029566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 47039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 47049566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 47059566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 47069566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 47079566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 47089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 47099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4710d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 47119566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 47129b8102ccSHong Zhang } 47139b8102ccSHong Zhang 4714110bb6e1SHong Zhang /* numeric phase */ 47159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 47169b8102ccSHong Zhang for (i = 0; i < m; i++) { 47179566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 47189b8102ccSHong Zhang Ii = i + rstart; 47199566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 47209566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 47219b8102ccSHong Zhang } 47229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 47239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 47243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4725c5d6d63eSBarry Smith } 4726c5d6d63eSBarry Smith 472749abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4728d71ae5a4SJacob Faibussowitsch { 472949abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 473051a7d1a8SHong Zhang 473151a7d1a8SHong Zhang PetscFunctionBegin; 47323ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 47339566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47349566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47359566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47369566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47379566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47389566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47399566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47409566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47419566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47429566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47439566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47449566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47459566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47469566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 474851a7d1a8SHong Zhang } 474951a7d1a8SHong Zhang 4750c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4751c6db04a5SJed Brown #include <petscbt.h> 47524ebed01fSBarry Smith 4753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4754d71ae5a4SJacob Faibussowitsch { 4755ce94432eSBarry Smith MPI_Comm comm; 475655d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4757b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47586497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47596497c311SBarry Smith PetscMPIInt proc, k; 4760b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47616497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4762b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 476355d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 476455d1abb9SHong Zhang MPI_Status *status; 4765fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4766dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 476755d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4768776b82aeSLisandro Dalcin PetscContainer container; 476955d1abb9SHong Zhang 477055d1abb9SHong Zhang PetscFunctionBegin; 47719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47733c2c1871SHong Zhang 47749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 477655d1abb9SHong Zhang 47779566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 477828b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47799566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4781fff043a9SJunchao Zhang aa = a_a; 4782bf0cc555SLisandro Dalcin 478355d1abb9SHong Zhang bi = merge->bi; 478455d1abb9SHong Zhang bj = merge->bj; 478555d1abb9SHong Zhang buf_ri = merge->buf_ri; 478655d1abb9SHong Zhang buf_rj = merge->buf_rj; 478755d1abb9SHong Zhang 47889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47897a2fc3feSBarry Smith owners = merge->rowmap->range; 479055d1abb9SHong Zhang len_s = merge->len_s; 479155d1abb9SHong Zhang 479255d1abb9SHong Zhang /* send and recv matrix values */ 47939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47949566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 479555d1abb9SHong Zhang 47969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 479755d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 479855d1abb9SHong Zhang if (!len_s[proc]) continue; 479955d1abb9SHong Zhang i = owners[proc]; 48006497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 480155d1abb9SHong Zhang k++; 480255d1abb9SHong Zhang } 480355d1abb9SHong Zhang 48049566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 48059566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 48069566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 480755d1abb9SHong Zhang 48089566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 48099566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 481055d1abb9SHong Zhang 481155d1abb9SHong Zhang /* insert mat values of mpimat */ 48129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 48139566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 481455d1abb9SHong Zhang 481555d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 481655d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4817f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 481855d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4819a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 482055d1abb9SHong Zhang } 482155d1abb9SHong Zhang 482255d1abb9SHong Zhang /* set values of ba */ 48237a2fc3feSBarry Smith m = merge->rowmap->n; 482455d1abb9SHong Zhang for (i = 0; i < m; i++) { 482555d1abb9SHong Zhang arow = owners[rank] + i; 482655d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 482755d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 48289566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 482955d1abb9SHong Zhang 483055d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 483155d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 483255d1abb9SHong Zhang aj = a->j + ai[arow]; 4833fff043a9SJunchao Zhang aa = a_a + ai[arow]; 483455d1abb9SHong Zhang nextaj = 0; 483555d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 483655d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 483755d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 483855d1abb9SHong Zhang } 483955d1abb9SHong Zhang } 484055d1abb9SHong Zhang 484155d1abb9SHong Zhang /* add received vals into ba */ 484255d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 484355d1abb9SHong Zhang /* i-th row */ 484455d1abb9SHong Zhang if (i == *nextrow[k]) { 484555d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4846f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4847f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 484855d1abb9SHong Zhang nextaj = 0; 484955d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 485055d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 485155d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 485255d1abb9SHong Zhang } 485355d1abb9SHong Zhang } 48549371c9d4SSatish Balay nextrow[k]++; 48559371c9d4SSatish Balay nextai[k]++; 485655d1abb9SHong Zhang } 485755d1abb9SHong Zhang } 48589566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 485955d1abb9SHong Zhang } 48609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 486355d1abb9SHong Zhang 48649566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48659566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48669566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48679566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487055d1abb9SHong Zhang } 487138f152feSBarry Smith 4872d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4873d71ae5a4SJacob Faibussowitsch { 487455a3bba9SHong Zhang Mat B_mpi; 4875c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4876b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4877b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4878d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48796497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4880c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4881b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 488255d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 488358cb9c82SHong Zhang MPI_Status *status; 48840298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4885be0fcf8dSHong Zhang PetscBT lnkbt; 488651a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4887776b82aeSLisandro Dalcin PetscContainer container; 488802c68681SHong Zhang 4889e5f2cdd8SHong Zhang PetscFunctionBegin; 48909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48913c2c1871SHong Zhang 489238f152feSBarry Smith /* make sure it is a PETSc comm */ 48939566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 489655d1abb9SHong Zhang 48979566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4899e5f2cdd8SHong Zhang 49006abd8857SHong Zhang /* determine row ownership */ 49019566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 49029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 49039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 49049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 49059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 49069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 49079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 490855d1abb9SHong Zhang 49097a2fc3feSBarry Smith m = merge->rowmap->n; 49107a2fc3feSBarry Smith owners = merge->rowmap->range; 49116abd8857SHong Zhang 49126abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 49133e06a4e6SHong Zhang len_s = merge->len_s; 491451a7d1a8SHong Zhang 49152257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4916c2234fe3SHong Zhang merge->nsend = 0; 49176497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 49182257cef7SHong Zhang len_si[proc] = 0; 49193e06a4e6SHong Zhang if (proc == rank) { 49206abd8857SHong Zhang len_s[proc] = 0; 49213e06a4e6SHong Zhang } else { 49226497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 49236497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 49243e06a4e6SHong Zhang } 49253e06a4e6SHong Zhang if (len_s[proc]) { 4926c2234fe3SHong Zhang merge->nsend++; 49272257cef7SHong Zhang nrows = 0; 49282257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49292257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 49302257cef7SHong Zhang } 49316497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 49322257cef7SHong Zhang len += len_si[proc]; 4933409913e3SHong Zhang } 493458cb9c82SHong Zhang } 4935409913e3SHong Zhang 49362257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49379566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49389566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4939671beff6SHong Zhang 49403e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49419566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49429566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 494302c68681SHong Zhang 49443e06a4e6SHong Zhang /* post the Isend of j-structure */ 49459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49463e06a4e6SHong Zhang 49476497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4948409913e3SHong Zhang if (!len_s[proc]) continue; 494902c68681SHong Zhang i = owners[proc]; 49506497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 495151a7d1a8SHong Zhang k++; 495251a7d1a8SHong Zhang } 495351a7d1a8SHong Zhang 49543e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49559566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49569566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 495702c68681SHong Zhang 495802c68681SHong Zhang /* send and recv i-structure */ 49599566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49609566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 496102c68681SHong Zhang 49629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49633e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49646497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 496502c68681SHong Zhang if (!len_s[proc]) continue; 49663e06a4e6SHong Zhang /* form outgoing message for i-structure: 49673e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49683e06a4e6SHong Zhang [1:nrows]: row index (global) 49693e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49703e06a4e6SHong Zhang */ 49712257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49723e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49733e06a4e6SHong Zhang buf_si[0] = nrows; 49743e06a4e6SHong Zhang buf_si_i[0] = 0; 49753e06a4e6SHong Zhang nrows = 0; 49763e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49773e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49783e06a4e6SHong Zhang if (anzi) { 49793e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49803e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49813e06a4e6SHong Zhang nrows++; 49823e06a4e6SHong Zhang } 49833e06a4e6SHong Zhang } 49846497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 498502c68681SHong Zhang k++; 49862257cef7SHong Zhang buf_si += len_si[proc]; 498702c68681SHong Zhang } 49882257cef7SHong Zhang 49899566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49909566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 499102c68681SHong Zhang 49929566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 499348a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49943e06a4e6SHong Zhang 49959566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49969566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49979566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49989566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49999566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 50009566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 50019566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 500258cb9c82SHong Zhang 5003bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 500458cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 50059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 500658cb9c82SHong Zhang bi[0] = 0; 500758cb9c82SHong Zhang 5008be0fcf8dSHong Zhang /* create and initialize a linked list */ 5009be0fcf8dSHong Zhang nlnk = N + 1; 50109566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 501158cb9c82SHong Zhang 5012bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 5013bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 50149566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 50152205254eSKarl Rupp 501658cb9c82SHong Zhang current_space = free_space; 501758cb9c82SHong Zhang 5018bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 50199566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 50201d79065fSBarry Smith 50213e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 50222257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 50233e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 50243e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 5025a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 50263e06a4e6SHong Zhang } 50272257cef7SHong Zhang 5028d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 5029bcc1bcd5SHong Zhang len = 0; 503058cb9c82SHong Zhang for (i = 0; i < m; i++) { 503158cb9c82SHong Zhang bnzi = 0; 503258cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 503358cb9c82SHong Zhang arow = owners[rank] + i; 503458cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 503558cb9c82SHong Zhang aj = a->j + ai[arow]; 50369566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 503758cb9c82SHong Zhang bnzi += nlnk; 503858cb9c82SHong Zhang /* add received col data into lnk */ 503951a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 504055d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50413e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50423e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50439566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50443e06a4e6SHong Zhang bnzi += nlnk; 50459371c9d4SSatish Balay nextrow[k]++; 50469371c9d4SSatish Balay nextai[k]++; 50473e06a4e6SHong Zhang } 504858cb9c82SHong Zhang } 5049bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 505058cb9c82SHong Zhang 505158cb9c82SHong Zhang /* if free space is not available, make more free space */ 505248a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 505358cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50549566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50559566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5056bcc1bcd5SHong Zhang 505758cb9c82SHong Zhang current_space->array += bnzi; 505858cb9c82SHong Zhang current_space->local_used += bnzi; 505958cb9c82SHong Zhang current_space->local_remaining -= bnzi; 506058cb9c82SHong Zhang 506158cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 506258cb9c82SHong Zhang } 5063bcc1bcd5SHong Zhang 50649566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5065bcc1bcd5SHong Zhang 50669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50679566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50689566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5069409913e3SHong Zhang 5070bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50719566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50729566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 507354b84b50SHong Zhang if (n == PETSC_DECIDE) { 50749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 507554b84b50SHong Zhang } else { 50769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 507754b84b50SHong Zhang } 50789566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50799566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5081d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50829566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 508358cb9c82SHong Zhang 508490431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50856abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5086affca5deSHong Zhang merge->bi = bi; 5087affca5deSHong Zhang merge->bj = bj; 508802c68681SHong Zhang merge->buf_ri = buf_ri; 508902c68681SHong Zhang merge->buf_rj = buf_rj; 50900298fd71SBarry Smith merge->coi = NULL; 50910298fd71SBarry Smith merge->coj = NULL; 50920298fd71SBarry Smith merge->owners_co = NULL; 5093affca5deSHong Zhang 50949566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5095bf0cc555SLisandro Dalcin 5096affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50979566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50989566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 509949abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 51009566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 51019566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5102affca5deSHong Zhang *mpimat = B_mpi; 510338f152feSBarry Smith 51049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 51053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5106e5f2cdd8SHong Zhang } 510725616d81SHong Zhang 5108cc4c1da9SBarry Smith /*@ 510911a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5110d4036a1aSHong Zhang matrices from each processor 5111d4036a1aSHong Zhang 5112d083f849SBarry Smith Collective 5113d4036a1aSHong Zhang 5114d4036a1aSHong Zhang Input Parameters: 5115d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5116d4036a1aSHong Zhang . seqmat - the input sequential matrices 511711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 511811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 511911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5120d4036a1aSHong Zhang 5121d4036a1aSHong Zhang Output Parameter: 5122d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5123d4036a1aSHong Zhang 5124d4036a1aSHong Zhang Level: advanced 5125d4036a1aSHong Zhang 512611a5261eSBarry Smith Note: 5127d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5128d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5129b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 51302ef1f0ffSBarry Smith 51311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5132d4036a1aSHong Zhang @*/ 5133d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5134d71ae5a4SJacob Faibussowitsch { 51357e63b356SHong Zhang PetscMPIInt size; 513655d1abb9SHong Zhang 513755d1abb9SHong Zhang PetscFunctionBegin; 51389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51397e63b356SHong Zhang if (size == 1) { 51409566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51417e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51429566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51437e63b356SHong Zhang } else { 51449566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51457e63b356SHong Zhang } 51469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51487e63b356SHong Zhang } 51499566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 515048a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51519566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51529566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 515455d1abb9SHong Zhang } 51554ebed01fSBarry Smith 5156bc08b0f1SBarry Smith /*@ 51572920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51588a9c020eSBarry Smith 51598a9c020eSBarry Smith Not Collective 51608a9c020eSBarry Smith 51612fe279fdSBarry Smith Input Parameter: 516220f4b53cSBarry Smith . A - the matrix 51638a9c020eSBarry Smith 51648a9c020eSBarry Smith Output Parameter: 51658a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51668a9c020eSBarry Smith 51678a9c020eSBarry Smith Level: developer 51688a9c020eSBarry Smith 51698a9c020eSBarry Smith Notes: 51702920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51712920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51722920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51732920cce0SJacob Faibussowitsch 517411a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51758a9c020eSBarry Smith 51762920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51772920cce0SJacob Faibussowitsch 517811a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51798a9c020eSBarry Smith 51801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51818a9c020eSBarry Smith @*/ 5182d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5183d71ae5a4SJacob Faibussowitsch { 51848a9c020eSBarry Smith PetscBool mpi; 51858a9c020eSBarry Smith 51868a9c020eSBarry Smith PetscFunctionBegin; 51878a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51888a9c020eSBarry Smith if (mpi) { 51898a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51908a9c020eSBarry Smith } else { 51918a9c020eSBarry Smith *A_loc = A; 51928a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51938a9c020eSBarry Smith } 51943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51958a9c020eSBarry Smith } 51968a9c020eSBarry Smith 51978a9c020eSBarry Smith /*@ 51982920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 519925616d81SHong Zhang 520032fba14fSHong Zhang Not Collective 520125616d81SHong Zhang 520225616d81SHong Zhang Input Parameters: 520325616d81SHong Zhang + A - the matrix 520411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 520525616d81SHong Zhang 520625616d81SHong Zhang Output Parameter: 520725616d81SHong Zhang . A_loc - the local sequential matrix generated 520825616d81SHong Zhang 520925616d81SHong Zhang Level: developer 521025616d81SHong Zhang 521177c65a98SStefano Zampini Notes: 52122920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 52132920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 52142920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 52152920cce0SJacob Faibussowitsch 521611a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 52178a9c020eSBarry Smith 52182920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 52192920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 52202920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 52212920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 522277c65a98SStefano Zampini 52231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 522425616d81SHong Zhang @*/ 5225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5226d71ae5a4SJacob Faibussowitsch { 522701b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5228b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5229b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5230ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5231ce496241SStefano Zampini PetscScalar *ca, *cam; 523277c65a98SStefano Zampini PetscMPIInt size; 5233d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52345a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52358661ff28SBarry Smith PetscBool match; 523625616d81SHong Zhang 523725616d81SHong Zhang PetscFunctionBegin; 52389566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 523928b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 524177c65a98SStefano Zampini if (size == 1) { 524277c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 524477c65a98SStefano Zampini *A_loc = mpimat->A; 524577c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52469566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 524777c65a98SStefano Zampini } 52483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 524977c65a98SStefano Zampini } 525070a9ba44SHong Zhang 52519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5252f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5253f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52549371c9d4SSatish Balay ai = a->i; 52559371c9d4SSatish Balay aj = a->j; 52569371c9d4SSatish Balay bi = b->i; 52579371c9d4SSatish Balay bj = b->j; 52589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5260ce496241SStefano Zampini aa = aav; 5261ce496241SStefano Zampini ba = bav; 526201b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5264dea91ad1SHong Zhang ci[0] = 0; 5265ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5268dea91ad1SHong Zhang k = 0; 526901b7ae99SHong Zhang for (i = 0; i < am; i++) { 52705a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52715a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 527201b7ae99SHong Zhang /* off-diagonal portion of A */ 52735a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52745a7d977cSHong Zhang col = cmap[*bj]; 52755a7d977cSHong Zhang if (col >= cstart) break; 52769371c9d4SSatish Balay cj[k] = col; 52779371c9d4SSatish Balay bj++; 52785a7d977cSHong Zhang ca[k++] = *ba++; 52795a7d977cSHong Zhang } 52805a7d977cSHong Zhang /* diagonal portion of A */ 52815a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52825a7d977cSHong Zhang cj[k] = cstart + *aj++; 52835a7d977cSHong Zhang ca[k++] = *aa++; 52845a7d977cSHong Zhang } 52855a7d977cSHong Zhang /* off-diagonal portion of A */ 52865a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52875a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52885a7d977cSHong Zhang ca[k++] = *ba++; 52895a7d977cSHong Zhang } 529025616d81SHong Zhang } 5291dea91ad1SHong Zhang /* put together the new matrix */ 52929566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5293dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5294dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5295dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5296e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5297e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5298dea91ad1SHong Zhang mat->nonew = 0; 52995a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 53005a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5301fff043a9SJunchao Zhang ci = mat->i; 5302fff043a9SJunchao Zhang cj = mat->j; 53039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 53045a7d977cSHong Zhang for (i = 0; i < am; i++) { 53055a7d977cSHong Zhang /* off-diagonal portion of A */ 53065a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 53075a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 53085a7d977cSHong Zhang col = cmap[*bj]; 53095a7d977cSHong Zhang if (col >= cstart) break; 53109371c9d4SSatish Balay *cam++ = *ba++; 53119371c9d4SSatish Balay bj++; 53125a7d977cSHong Zhang } 53135a7d977cSHong Zhang /* diagonal portion of A */ 5314ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5315a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 53165a7d977cSHong Zhang /* off-diagonal portion of A */ 5317f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 53189371c9d4SSatish Balay *cam++ = *ba++; 53199371c9d4SSatish Balay bj++; 5320f33d1a9aSHong Zhang } 53215a7d977cSHong Zhang } 53229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 532398921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 53259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 53269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 532825616d81SHong Zhang } 532925616d81SHong Zhang 5330ed502f03SStefano Zampini /*@ 533111a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 53324cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5333ed502f03SStefano Zampini 5334ed502f03SStefano Zampini Not Collective 5335ed502f03SStefano Zampini 5336ed502f03SStefano Zampini Input Parameters: 5337ed502f03SStefano Zampini + A - the matrix 533811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5339ed502f03SStefano Zampini 5340d8d19677SJose E. Roman Output Parameters: 53412ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5342ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5343ed502f03SStefano Zampini 5344ed502f03SStefano Zampini Level: developer 5345ed502f03SStefano Zampini 534611a5261eSBarry Smith Note: 53472ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53484cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5349ed502f03SStefano Zampini 53501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5351ed502f03SStefano Zampini @*/ 5352d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5353d71ae5a4SJacob Faibussowitsch { 5354ed502f03SStefano Zampini Mat Ao, Ad; 5355ed502f03SStefano Zampini const PetscInt *cmap; 5356ed502f03SStefano Zampini PetscMPIInt size; 5357ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5358ed502f03SStefano Zampini 5359ed502f03SStefano Zampini PetscFunctionBegin; 53609566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5362ed502f03SStefano Zampini if (size == 1) { 5363ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5365ed502f03SStefano Zampini *A_loc = Ad; 5366ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53679566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5368ed502f03SStefano Zampini } 53699566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5371ed502f03SStefano Zampini } 53729566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5374ed502f03SStefano Zampini if (f) { 53759566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5376ed502f03SStefano Zampini } else { 5377ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5378ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5379ed502f03SStefano Zampini Mat_SeqAIJ *c; 5380ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5381ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5382ed502f03SStefano Zampini PetscInt *ci, *cj; 5383ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5384ed502f03SStefano Zampini PetscScalar *ca; 5385ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5386ed502f03SStefano Zampini 53879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53889566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5391ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5392ed502f03SStefano Zampini PetscInt k; 53939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5396ed502f03SStefano Zampini ci[0] = 0; 5397ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5398ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5399ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5400ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5401ed502f03SStefano Zampini /* diagonal portion of A */ 5402ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5403ed502f03SStefano Zampini cj[k] = *aj++; 5404ed502f03SStefano Zampini ca[k] = *aa++; 5405ed502f03SStefano Zampini } 5406ed502f03SStefano Zampini /* off-diagonal portion of A */ 5407ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5408ed502f03SStefano Zampini cj[k] = dn + *bj++; 5409ed502f03SStefano Zampini ca[k] = *ba++; 5410ed502f03SStefano Zampini } 5411ed502f03SStefano Zampini } 5412ed502f03SStefano Zampini /* put together the new matrix */ 54139566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5414ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5415ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5416ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5417ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5418ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5419ed502f03SStefano Zampini c->nonew = 0; 54209566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5421ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 54229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5423ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5424ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5425ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5426ed502f03SStefano Zampini /* diagonal portion of A */ 5427ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5428ed502f03SStefano Zampini /* off-diagonal portion of A */ 5429ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5430ed502f03SStefano Zampini } 54319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 543298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 54339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5435ed502f03SStefano Zampini if (glob) { 5436ed502f03SStefano Zampini PetscInt cst, *gidx; 5437ed502f03SStefano Zampini 54389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5440ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5441ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54429566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5443ed502f03SStefano Zampini } 5444ed502f03SStefano Zampini } 54459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5447ed502f03SStefano Zampini } 5448ed502f03SStefano Zampini 544932fba14fSHong Zhang /*@C 545011a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 545132fba14fSHong Zhang 545232fba14fSHong Zhang Not Collective 545332fba14fSHong Zhang 545432fba14fSHong Zhang Input Parameters: 545532fba14fSHong Zhang + A - the matrix 545611a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 545720f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 545820f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 545932fba14fSHong Zhang 546032fba14fSHong Zhang Output Parameter: 546132fba14fSHong Zhang . A_loc - the local sequential matrix generated 546232fba14fSHong Zhang 546332fba14fSHong Zhang Level: developer 546432fba14fSHong Zhang 54651cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 546632fba14fSHong Zhang @*/ 5467d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5468d71ae5a4SJacob Faibussowitsch { 546932fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 547032fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 547132fba14fSHong Zhang IS isrowa, iscola; 547232fba14fSHong Zhang Mat *aloc; 54734a2b5492SBarry Smith PetscBool match; 547432fba14fSHong Zhang 547532fba14fSHong Zhang PetscFunctionBegin; 54769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 547728b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 547932fba14fSHong Zhang if (!row) { 54809371c9d4SSatish Balay start = A->rmap->rstart; 54819371c9d4SSatish Balay end = A->rmap->rend; 54829566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 548332fba14fSHong Zhang } else { 548432fba14fSHong Zhang isrowa = *row; 548532fba14fSHong Zhang } 548632fba14fSHong Zhang if (!col) { 5487d0f46423SBarry Smith start = A->cmap->rstart; 548832fba14fSHong Zhang cmap = a->garray; 5489d0f46423SBarry Smith nzA = a->A->cmap->n; 5490d0f46423SBarry Smith nzB = a->B->cmap->n; 54919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 549232fba14fSHong Zhang ncols = 0; 549332fba14fSHong Zhang for (i = 0; i < nzB; i++) { 549432fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 549532fba14fSHong Zhang else break; 549632fba14fSHong Zhang } 549732fba14fSHong Zhang imark = i; 549832fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 549932fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 55009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 550132fba14fSHong Zhang } else { 550232fba14fSHong Zhang iscola = *col; 550332fba14fSHong Zhang } 550432fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 55059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 550632fba14fSHong Zhang aloc[0] = *A_loc; 550732fba14fSHong Zhang } 55089566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5509109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 55109566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5511109e0772SStefano Zampini } 551232fba14fSHong Zhang *A_loc = aloc[0]; 55139566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 551448a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 551548a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 55169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 55173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 551832fba14fSHong Zhang } 551932fba14fSHong Zhang 55205c65b9ecSFande Kong /* 55215c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 55225c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 55235c65b9ecSFande Kong * on a global size. 55245c65b9ecSFande Kong * */ 5525ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5526d71ae5a4SJacob Faibussowitsch { 55275c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5528f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5529131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5530131c27b5Sprj- PetscMPIInt owner; 55315c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 55325c65b9ecSFande Kong const PetscInt *lrowindices; 55335c65b9ecSFande Kong PetscSF sf, osf; 55345c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55355c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55365c65b9ecSFande Kong MPI_Comm comm; 55375c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5538fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55395c65b9ecSFande Kong 55405c65b9ecSFande Kong PetscFunctionBegin; 55419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55425c65b9ecSFande Kong /* plocalsize is the number of roots 55435c65b9ecSFande Kong * nrows is the number of leaves 55445c65b9ecSFande Kong * */ 55459566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55469566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55495c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55505c65b9ecSFande Kong /* Find a remote index and an owner for a row 55515c65b9ecSFande Kong * The row could be local or remote 55525c65b9ecSFande Kong * */ 555334bcad68SFande Kong owner = 0; 555434bcad68SFande Kong lidx = 0; 55559566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55565c65b9ecSFande Kong iremote[i].index = lidx; 55575c65b9ecSFande Kong iremote[i].rank = owner; 55585c65b9ecSFande Kong } 55595c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5561f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55625c65b9ecSFande Kong * offsets 55635c65b9ecSFande Kong * */ 55649566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55659566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5567bc8e477aSFande Kong 55689566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55699566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55709566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55715c65b9ecSFande Kong roffsets[0] = 0; 55725c65b9ecSFande Kong roffsets[1] = 0; 55735c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55744cf0e950SBarry Smith /* diagonal */ 55755c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55764cf0e950SBarry Smith /* off-diagonal */ 55775c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55785c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55795c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55805c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55815c65b9ecSFande Kong } 55829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55845c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55889566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55909566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55919566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55925c65b9ecSFande Kong dntotalcols = 0; 55935c65b9ecSFande Kong ontotalcols = 0; 5594bc8e477aSFande Kong ncol = 0; 55955c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55965c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5597bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55984cf0e950SBarry Smith /* diagonal */ 55995c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 56004cf0e950SBarry Smith /* off-diagonal */ 56015c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 56025c65b9ecSFande Kong } 56035c65b9ecSFande Kong /* We do not need to figure the right number of columns 56045c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 56055c65b9ecSFande Kong * */ 56069566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 56079566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 56089566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 56095c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56104cf0e950SBarry Smith /* diagonal */ 56119566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 56124cf0e950SBarry Smith /* off-diagonal */ 56139566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 56144cf0e950SBarry Smith /* diagonal */ 56159566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 56164cf0e950SBarry Smith /* off-diagonal */ 56179566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 56185c65b9ecSFande Kong dntotalcols = 0; 56195c65b9ecSFande Kong ontotalcols = 0; 56205c65b9ecSFande Kong ntotalcols = 0; 56215c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 562234bcad68SFande Kong owner = 0; 56239566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 56245c65b9ecSFande Kong /* Set iremote for diag matrix */ 56255c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 56265c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 56275c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 56285c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 56295c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 56305c65b9ecSFande Kong } 56314cf0e950SBarry Smith /* off-diagonal */ 56325c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 56335c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56345c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56355c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56365c65b9ecSFande Kong } 56375c65b9ecSFande Kong } 56389566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56399566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56409566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56419566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56425c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56435c65b9ecSFande Kong * Diag matrix 56445c65b9ecSFande Kong * */ 56459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56469566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56479566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56485c65b9ecSFande Kong 56499566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56504cf0e950SBarry Smith /* off-diagonal */ 56519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56529566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56539566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56564cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56599566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56605c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56615c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56635c65b9ecSFande Kong /* We want P_oth store global indices */ 56649566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56655c65b9ecSFande Kong /* Use memory scalable approach */ 56669566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56679566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56705c65b9ecSFande Kong /* Convert back to local indices */ 56715c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56735c65b9ecSFande Kong nout = 0; 56749566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 567508401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56769566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56775c65b9ecSFande Kong /* Exchange values */ 56789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56799566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56825c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56835c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56865c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56879566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56889566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56909566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56925c65b9ecSFande Kong } 56935c65b9ecSFande Kong 56945c65b9ecSFande Kong /* 56955c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56965c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56975c65b9ecSFande Kong * */ 5698d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5699d71ae5a4SJacob Faibussowitsch { 57005c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5701bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5702bc8e477aSFande Kong IS rows, map; 5703bc8e477aSFande Kong PetscHMapI hamp; 5704bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 57055c65b9ecSFande Kong MPI_Comm comm; 57065c65b9ecSFande Kong PetscSF sf, osf; 5707bc8e477aSFande Kong PetscBool has; 57085c65b9ecSFande Kong 57095c65b9ecSFande Kong PetscFunctionBegin; 57109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57125c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 57135c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 57145c65b9ecSFande Kong * */ 57155c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 57165c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5717eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 57189566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5719bc8e477aSFande Kong count = 0; 5720bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5721bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5722bc8e477aSFande Kong key = a->garray[i] / dof; 57239566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5724bc8e477aSFande Kong if (!has) { 5725bc8e477aSFande Kong mapping[i] = count; 57269566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5727bc8e477aSFande Kong } else { 5728bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5729bc8e477aSFande Kong mapping[i] = count - 1; 57305c65b9ecSFande Kong } 5731bc8e477aSFande Kong } 57329566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 57339566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5734eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57365c65b9ecSFande Kong off = 0; 57379566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57389566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57399566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57415c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57429566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57439566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57475c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57485c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 574935cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5750fff043a9SJunchao Zhang */ 5751fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5752fff043a9SJunchao Zhang 57539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57549566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 575508401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57565c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57575c65b9ecSFande Kong /* Update values in place */ 57589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57666718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57695c65b9ecSFande Kong } 57705c65b9ecSFande Kong 577125616d81SHong Zhang /*@C 577220f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 577325616d81SHong Zhang 5774c3339decSBarry Smith Collective 577525616d81SHong Zhang 577625616d81SHong Zhang Input Parameters: 577711a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 577811a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 577911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 578025616d81SHong Zhang 5781f1a722f8SMatthew G. Knepley Output Parameters: 578227430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 578327430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5784f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 578525616d81SHong Zhang 578625616d81SHong Zhang Level: developer 578725616d81SHong Zhang 578820f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 578925616d81SHong Zhang @*/ 5790d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5791d71ae5a4SJacob Faibussowitsch { 5792899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5793b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 579425616d81SHong Zhang IS isrowb, iscolb; 57950298fd71SBarry Smith Mat *bseq = NULL; 579625616d81SHong Zhang 579725616d81SHong Zhang PetscFunctionBegin; 579820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 579920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 580125616d81SHong Zhang 580225616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5803d0f46423SBarry Smith start = A->cmap->rstart; 580425616d81SHong Zhang cmap = a->garray; 5805d0f46423SBarry Smith nzA = a->A->cmap->n; 5806d0f46423SBarry Smith nzB = a->B->cmap->n; 58079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 580825616d81SHong Zhang ncols = 0; 58090390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 581025616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 581125616d81SHong Zhang else break; 581225616d81SHong Zhang } 581325616d81SHong Zhang imark = i; 58140390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 58150390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 58169566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 58179566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 581825616d81SHong Zhang } else { 581908401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 58209371c9d4SSatish Balay isrowb = *rowb; 58219371c9d4SSatish Balay iscolb = *colb; 58229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 582325616d81SHong Zhang bseq[0] = *B_seq; 582425616d81SHong Zhang } 58259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 582625616d81SHong Zhang *B_seq = bseq[0]; 58279566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 582825616d81SHong Zhang if (!rowb) { 58299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 583025616d81SHong Zhang } else { 583125616d81SHong Zhang *rowb = isrowb; 583225616d81SHong Zhang } 583325616d81SHong Zhang if (!colb) { 58349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 583525616d81SHong Zhang } else { 583625616d81SHong Zhang *colb = iscolb; 583725616d81SHong Zhang } 58389566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 584025616d81SHong Zhang } 5841429d309bSHong Zhang 5842f8487c73SHong Zhang /* 584327430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 584401b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5845429d309bSHong Zhang 5846c3339decSBarry Smith Collective 5847429d309bSHong Zhang 5848429d309bSHong Zhang Input Parameters: 584927430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 585027430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5851429d309bSHong Zhang 5852429d309bSHong Zhang Output Parameter: 58530298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58540298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58550298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5856598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5857429d309bSHong Zhang 585811a5261eSBarry Smith Developer Note: 585911a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58606eb45d04SBarry Smith for this matrix. This is not desirable.. 58616eb45d04SBarry Smith 5862429d309bSHong Zhang Level: developer 5863429d309bSHong Zhang 5864f8487c73SHong Zhang */ 58656497c311SBarry Smith 5866d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5867d71ae5a4SJacob Faibussowitsch { 5868899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58694b8d542aSHong Zhang VecScatter ctx; 5870ce94432eSBarry Smith MPI_Comm comm; 58713515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58726497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58733515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5874277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58756497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5876277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5877ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5878ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5879429d309bSHong Zhang 5880429d309bSHong Zhang PetscFunctionBegin; 58819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5883a7c7454dSHong Zhang 588420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 588520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5888a6b2eed2SHong Zhang 5889ec07b8f8SHong Zhang if (size == 1) { 5890ec07b8f8SHong Zhang startsj_s = NULL; 5891ec07b8f8SHong Zhang bufa_ptr = NULL; 589252f7967eSHong Zhang *B_oth = NULL; 58933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5894ec07b8f8SHong Zhang } 5895ec07b8f8SHong Zhang 5896fa83eaafSHong Zhang ctx = a->Mvctx; 58974b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58984b8d542aSHong Zhang 58999566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59003515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 59019566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 59029566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 59039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5904ddea5d60SJunchao Zhang rwaits = reqs; 59058e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5906429d309bSHong Zhang 5907b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5908429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5909a6b2eed2SHong Zhang /* i-array */ 5910a6b2eed2SHong Zhang /* post receives */ 59119566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5912a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 591374268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5914e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 59156497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5916429d309bSHong Zhang } 5917a6b2eed2SHong Zhang 5918a6b2eed2SHong Zhang /* pack the outgoing message */ 59199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 59202205254eSKarl Rupp 59212205254eSKarl Rupp sstartsj[0] = 0; 59222205254eSKarl Rupp rstartsj[0] = 0; 5923a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 59243515ee7fSJunchao Zhang if (nsends) { 59253515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 59269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 59273515ee7fSJunchao Zhang } 5928a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 59293515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5930e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 593187025532SHong Zhang for (j = 0; j < nrows; j++) { 5932d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5933e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59349566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59352205254eSKarl Rupp 5936e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59372205254eSKarl Rupp 5938e42f35eeSHong Zhang len += ncols; 59399566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5940e42f35eeSHong Zhang } 5941a6b2eed2SHong Zhang k++; 5942429d309bSHong Zhang } 59436497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59442205254eSKarl Rupp 5945dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5946429d309bSHong Zhang } 594787025532SHong Zhang /* recvs and sends of i-array are completed */ 59489566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59499566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5950e42f35eeSHong Zhang 5951a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5954a6b2eed2SHong Zhang 595587025532SHong Zhang /* create i-array of B_oth */ 59569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59572205254eSKarl Rupp 595887025532SHong Zhang b_othi[0] = 0; 5959a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5960a6b2eed2SHong Zhang k = 0; 5961a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59623515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59633515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 596487025532SHong Zhang for (j = 0; j < nrows; j++) { 596587025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59669566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5967f91af8c7SBarry Smith k++; 5968a6b2eed2SHong Zhang } 5969dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5970a6b2eed2SHong Zhang } 59719566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5972a6b2eed2SHong Zhang 59736aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5976a6b2eed2SHong Zhang 597787025532SHong Zhang /* j-array */ 5978a6b2eed2SHong Zhang /* post receives of j-array */ 5979a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 598087025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59816497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5982a6b2eed2SHong Zhang } 5983e42f35eeSHong Zhang 5984e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59853515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5986a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5987e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5988a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 598987025532SHong Zhang for (j = 0; j < nrows; j++) { 5990d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5991e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59929566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5993ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59949566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5995e42f35eeSHong Zhang } 599687025532SHong Zhang } 59976497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 599887025532SHong Zhang } 599987025532SHong Zhang 600087025532SHong Zhang /* recvs and sends of j-array are completed */ 60019566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 600287025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 6003b7f45c76SHong Zhang sstartsj = *startsj_s; 60041d79065fSBarry Smith rstartsj = *startsj_r; 600587025532SHong Zhang bufa = *bufa_ptr; 60069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 6007ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 600887025532SHong Zhang 600987025532SHong Zhang /* a-array */ 601087025532SHong Zhang /* post receives of a-array */ 601187025532SHong Zhang for (i = 0; i < nrecvs; i++) { 601287025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 60136497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 601487025532SHong Zhang } 6015e42f35eeSHong Zhang 6016e42f35eeSHong Zhang /* pack the outgoing message a-array */ 60173515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 601887025532SHong Zhang for (i = 0; i < nsends; i++) { 6019e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 602087025532SHong Zhang bufA = bufa + sstartsj[i]; 602187025532SHong Zhang for (j = 0; j < nrows; j++) { 6022d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 6023e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 60249566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6025ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 60269566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6027e42f35eeSHong Zhang } 6028a6b2eed2SHong Zhang } 60296497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 6030a6b2eed2SHong Zhang } 603187025532SHong Zhang /* recvs and sends of a-array are completed */ 60329566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60339566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6034a6b2eed2SHong Zhang 603587025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6036dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 6037dd460d27SBarry Smith 6038a6b2eed2SHong Zhang /* put together the new matrix */ 60399566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6040a6b2eed2SHong Zhang 6041a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6042a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 604387025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6044e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6045e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 604687025532SHong Zhang b_oth->nonew = 0; 6047a6b2eed2SHong Zhang 60489566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6049b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60509566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60519566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6052dea91ad1SHong Zhang } else { 6053b7f45c76SHong Zhang *startsj_s = sstartsj; 60541d79065fSBarry Smith *startsj_r = rstartsj; 605587025532SHong Zhang *bufa_ptr = bufa; 605687025532SHong Zhang } 6057fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6059dea91ad1SHong Zhang } 60603515ee7fSJunchao Zhang 60619566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60629566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60639566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6065429d309bSHong Zhang } 6066ccd8e176SBarry Smith 6067cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6068cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6069ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60709779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6071a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6072191b95cbSRichard Tran Mills #endif 6073ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6074cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60755d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6076cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60775d7652ecSHong Zhang #endif 6078d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6079d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6080d24d4204SJose E. Roman #endif 608163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 608263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 608363c07aadSStefano Zampini #endif 60843338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60853338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60863338378cSStefano Zampini #endif 6087d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6088d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6089d5e393b6SSuyash Tandon #endif 60903d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60913d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60923d0639e7SStefano Zampini #endif 6093d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60944222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60954222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 609617667f90SBarry Smith 6097fc4dec0aSBarry Smith /* 6098fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6099fc4dec0aSBarry Smith 6100fc4dec0aSBarry Smith n p p 61012da392ccSBarry Smith [ ] [ ] [ ] 61022da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 61032da392ccSBarry Smith [ ] [ ] [ ] 6104fc4dec0aSBarry Smith 6105fc4dec0aSBarry Smith */ 6106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6107d71ae5a4SJacob Faibussowitsch { 6108fc4dec0aSBarry Smith Mat At, Bt, Ct; 6109fc4dec0aSBarry Smith 6110fc4dec0aSBarry Smith PetscFunctionBegin; 61119566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 61129566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6113fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 61149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 61159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 61167fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 61179566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 61189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 61193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6120fc4dec0aSBarry Smith } 6121fc4dec0aSBarry Smith 6122d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6123d71ae5a4SJacob Faibussowitsch { 61246718818eSStefano Zampini PetscBool cisdense; 6125fc4dec0aSBarry Smith 6126fc4dec0aSBarry Smith PetscFunctionBegin; 612708401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 61289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 61299566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6130d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 613148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 61329566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6133f75ecaa4SHong Zhang 61344222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6136fc4dec0aSBarry Smith } 6137fc4dec0aSBarry Smith 6138d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6139d71ae5a4SJacob Faibussowitsch { 61404222ddf1SHong Zhang Mat_Product *product = C->product; 61414222ddf1SHong Zhang Mat A = product->A, B = product->B; 6142fc4dec0aSBarry Smith 6143fc4dec0aSBarry Smith PetscFunctionBegin; 614420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 614520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61464222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61474222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6149fc4dec0aSBarry Smith } 6150fc4dec0aSBarry Smith 6151d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6152d71ae5a4SJacob Faibussowitsch { 61534222ddf1SHong Zhang Mat_Product *product = C->product; 61544222ddf1SHong Zhang 61554222ddf1SHong Zhang PetscFunctionBegin; 615648a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61584222ddf1SHong Zhang } 6159394ed5ebSJunchao Zhang 616027430b45SBarry Smith /* 616127430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6162394ed5ebSJunchao Zhang 6163394ed5ebSJunchao Zhang Input Parameters: 6164394ed5ebSJunchao Zhang 6165651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6166651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6167394ed5ebSJunchao Zhang 6168158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6169394ed5ebSJunchao Zhang 6170394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6171394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6172394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6173394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6174394ed5ebSJunchao Zhang 6175394ed5ebSJunchao Zhang Similar for Set2. 6176394ed5ebSJunchao Zhang 6177394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6178394ed5ebSJunchao Zhang 6179158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6180394ed5ebSJunchao Zhang 6181394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6182394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6183394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6184394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6185394ed5ebSJunchao Zhang */ 6186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6187d71ae5a4SJacob Faibussowitsch { 6188394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6189394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6190394ed5ebSJunchao Zhang 6191394ed5ebSJunchao Zhang PetscFunctionBegin; 61929566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6193394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6194394ed5ebSJunchao Zhang i[0] = 0; 6195394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6196394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6197394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6198394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6199394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6200394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6201394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6202394ed5ebSJunchao Zhang j[t] = j1[b1]; 6203394ed5ebSJunchao Zhang imap1[t1] = t; 6204394ed5ebSJunchao Zhang imap2[t2] = t; 6205394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6206394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 62079371c9d4SSatish Balay t1++; 62089371c9d4SSatish Balay t2++; 62099371c9d4SSatish Balay t++; 6210394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6211394ed5ebSJunchao Zhang j[t] = j1[b1]; 6212394ed5ebSJunchao Zhang imap1[t1] = t; 6213394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 62149371c9d4SSatish Balay t1++; 62159371c9d4SSatish Balay t++; 6216394ed5ebSJunchao Zhang } else { 6217394ed5ebSJunchao Zhang j[t] = j2[b2]; 6218394ed5ebSJunchao Zhang imap2[t2] = t; 6219394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62209371c9d4SSatish Balay t2++; 62219371c9d4SSatish Balay t++; 6222394ed5ebSJunchao Zhang } 6223394ed5ebSJunchao Zhang } 6224394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6225394ed5ebSJunchao Zhang while (b1 < e1) { 6226394ed5ebSJunchao Zhang j[t] = j1[b1]; 6227394ed5ebSJunchao Zhang imap1[t1] = t; 6228394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 62299371c9d4SSatish Balay t1++; 62309371c9d4SSatish Balay t++; 6231394ed5ebSJunchao Zhang } 6232394ed5ebSJunchao Zhang while (b2 < e2) { 6233394ed5ebSJunchao Zhang j[t] = j2[b2]; 6234394ed5ebSJunchao Zhang imap2[t2] = t; 6235394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62369371c9d4SSatish Balay t2++; 62379371c9d4SSatish Balay t++; 6238394ed5ebSJunchao Zhang } 62396497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6240394ed5ebSJunchao Zhang } 62413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6242394ed5ebSJunchao Zhang } 6243394ed5ebSJunchao Zhang 624427430b45SBarry Smith /* 624527430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6246394ed5ebSJunchao Zhang 6247394ed5ebSJunchao Zhang Input Parameters: 6248394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6249394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6250394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6251394ed5ebSJunchao Zhang 6252394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6253394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6254394ed5ebSJunchao Zhang 6255394ed5ebSJunchao Zhang Output Parameters: 6256394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6257394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6258394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6259394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6260394ed5ebSJunchao Zhang 6261394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6262158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6263158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6264394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6265394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6266394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6267394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6268394ed5ebSJunchao Zhang 6269394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6270394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6271394ed5ebSJunchao Zhang 6272394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6273394ed5ebSJunchao Zhang 6274158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6275394ed5ebSJunchao Zhang */ 6276d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6277d71ae5a4SJacob Faibussowitsch { 6278394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6279394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6280394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6281394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6282394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6283394ed5ebSJunchao Zhang 6284394ed5ebSJunchao Zhang PetscFunctionBegin; 62859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62869566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6287394ed5ebSJunchao Zhang m = rend - rstart; 6288394ed5ebSJunchao Zhang 6289651b1cf9SStefano Zampini /* Skip negative rows */ 6290651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62919371c9d4SSatish Balay if (i[k] >= 0) break; 6292394ed5ebSJunchao Zhang 6293394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6294394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6295394ed5ebSJunchao Zhang */ 6296394ed5ebSJunchao Zhang while (k < n) { 6297394ed5ebSJunchao Zhang row = i[k]; 6298394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62999371c9d4SSatish Balay for (s = k; s < n; s++) 63009371c9d4SSatish Balay if (i[s] != row) break; 6301651b1cf9SStefano Zampini 63021690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6303394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 63041690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 630554c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6306394ed5ebSJunchao Zhang } 63079566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6308158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6309394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6310394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6311394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6312394ed5ebSJunchao Zhang 6313394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6314394ed5ebSJunchao Zhang Atot += mid - k; 6315394ed5ebSJunchao Zhang Btot += s - mid; 6316394ed5ebSJunchao Zhang 6317651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6318394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6319394ed5ebSJunchao Zhang col = j[p]; 63209371c9d4SSatish Balay do { 63211690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 63229371c9d4SSatish Balay p++; 6323651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6324394ed5ebSJunchao Zhang Annz++; 6325394ed5ebSJunchao Zhang } 6326394ed5ebSJunchao Zhang 6327651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6328394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6329394ed5ebSJunchao Zhang col = j[p]; 6330d71ae5a4SJacob Faibussowitsch do { 6331d71ae5a4SJacob Faibussowitsch p++; 6332d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6333394ed5ebSJunchao Zhang Bnnz++; 6334394ed5ebSJunchao Zhang } 6335394ed5ebSJunchao Zhang k = s; 6336394ed5ebSJunchao Zhang } 6337394ed5ebSJunchao Zhang 6338394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6339158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6340158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6341158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6342158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6343394ed5ebSJunchao Zhang 63446aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6345394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6346394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6347394ed5ebSJunchao Zhang k = rowBegin[r]; 6348394ed5ebSJunchao Zhang mid = rowMid[r]; 6349394ed5ebSJunchao Zhang s = rowEnd[r]; 63508e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63518e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6352394ed5ebSJunchao Zhang Atot += mid - k; 6353394ed5ebSJunchao Zhang Btot += s - mid; 6354394ed5ebSJunchao Zhang 6355394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6356394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6357394ed5ebSJunchao Zhang col = j[p]; 6358394ed5ebSJunchao Zhang q = p; 6359d71ae5a4SJacob Faibussowitsch do { 6360d71ae5a4SJacob Faibussowitsch p++; 6361d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6362394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6363394ed5ebSJunchao Zhang Annz++; 6364394ed5ebSJunchao Zhang } 6365394ed5ebSJunchao Zhang 6366394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6367394ed5ebSJunchao Zhang col = j[p]; 6368394ed5ebSJunchao Zhang q = p; 6369d71ae5a4SJacob Faibussowitsch do { 6370d71ae5a4SJacob Faibussowitsch p++; 6371d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6372394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6373394ed5ebSJunchao Zhang Bnnz++; 6374394ed5ebSJunchao Zhang } 6375394ed5ebSJunchao Zhang } 6376394ed5ebSJunchao Zhang /* Output */ 6377394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6378394ed5ebSJunchao Zhang *Annz_ = Annz; 6379394ed5ebSJunchao Zhang *Atot_ = Atot; 6380394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6381394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6382394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6383394ed5ebSJunchao Zhang *Btot_ = Btot; 6384394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6386394ed5ebSJunchao Zhang } 6387394ed5ebSJunchao Zhang 638827430b45SBarry Smith /* 638927430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6390158ec288SJunchao Zhang 6391158ec288SJunchao Zhang Input Parameters: 6392158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6393158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6394158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6395651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6396158ec288SJunchao Zhang 6397158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6398158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6399158ec288SJunchao Zhang 6400158ec288SJunchao Zhang Example: 6401158ec288SJunchao Zhang nnz1 = 4 6402158ec288SJunchao Zhang nnz = 6 6403158ec288SJunchao Zhang imap = [1,3,4,5] 6404158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6405158ec288SJunchao Zhang then, 6406158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6407158ec288SJunchao Zhang */ 6408d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6409d71ae5a4SJacob Faibussowitsch { 6410158ec288SJunchao Zhang PetscCount k, p; 6411158ec288SJunchao Zhang 6412158ec288SJunchao Zhang PetscFunctionBegin; 6413158ec288SJunchao Zhang jmap_new[0] = 0; 6414158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6415158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6416158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6417158ec288SJunchao Zhang } 6418158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 64193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6420158ec288SJunchao Zhang } 6421158ec288SJunchao Zhang 642249abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 64232c4ab24aSJunchao Zhang { 642449abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 64252c4ab24aSJunchao Zhang 64262c4ab24aSJunchao Zhang PetscFunctionBegin; 64272c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 64282c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 64292c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 64302c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 64312c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 64322c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 64332c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 64342c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64352c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64362c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64372c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64382c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64392c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64402c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64412c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64422c4ab24aSJunchao Zhang } 64432c4ab24aSJunchao Zhang 6444d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6445d71ae5a4SJacob Faibussowitsch { 6446394ed5ebSJunchao Zhang MPI_Comm comm; 6447394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6448394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6449394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6450394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64512c4ab24aSJunchao Zhang PetscContainer container; 64522c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6453394ed5ebSJunchao Zhang 6454394ed5ebSJunchao Zhang PetscFunctionBegin; 64559566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6457cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6458eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6459cbc6b225SStefano Zampini #else 64609566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6461cbc6b225SStefano Zampini #endif 64629566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6463cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6464cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6465cbc6b225SStefano Zampini 64669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64719566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64729566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64739566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64749566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6475394ed5ebSJunchao Zhang 64766aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6477394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6478394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6479e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6480e8729f6fSJunchao Zhang 6481e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6482394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6483394ed5ebSJunchao Zhang 6484394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6485394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6486394ed5ebSJunchao Zhang will have positive row indices. 6487394ed5ebSJunchao Zhang */ 6488394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64891690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64901690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6491f7d195e4SLawrence Mitchell else { 6492f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64931690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6494f7d195e4SLawrence Mitchell } 6495394ed5ebSJunchao Zhang } 6496394ed5ebSJunchao Zhang 6497da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64989566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6499651b1cf9SStefano Zampini 6500651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6501651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 65021690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 65036497c311SBarry Smith PetscCount i1start = k; 6504651b1cf9SStefano Zampini 65051690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 65061690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6507394ed5ebSJunchao Zhang 6508394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6509394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6510394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6511394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6512394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6513394ed5ebSJunchao Zhang const PetscInt *ranges; 6514394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6515394ed5ebSJunchao Zhang 65169566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 65179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6518394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6519394ed5ebSJunchao Zhang PetscMPIInt owner; 6520394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6521cbc6b225SStefano Zampini 6522394ed5ebSJunchao Zhang /* Locate a row range */ 6523394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 65249566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6525394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6526394ed5ebSJunchao Zhang 6527394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 65289566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6529394ed5ebSJunchao Zhang 6530394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6531394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6532394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6533394ed5ebSJunchao Zhang PetscInt *nentries2; 6534394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6535cbc6b225SStefano Zampini 65369566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65379566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65399566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6540394ed5ebSJunchao Zhang sendto = sendto2; 6541394ed5ebSJunchao Zhang nentries = nentries2; 6542394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6543394ed5ebSJunchao Zhang } 6544394ed5ebSJunchao Zhang sendto[nsend] = owner; 65456497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6546394ed5ebSJunchao Zhang nsend++; 6547394ed5ebSJunchao Zhang k = p; 6548394ed5ebSJunchao Zhang } 6549394ed5ebSJunchao Zhang 6550394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6551394ed5ebSJunchao Zhang PetscSF sf1; 6552394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6553394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6554394ed5ebSJunchao Zhang PetscInt *offsets; 6555394ed5ebSJunchao Zhang PetscSFNode *iremote; 6556394ed5ebSJunchao Zhang 65579566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6560394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6561394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6562394ed5ebSJunchao Zhang iremote[k].index = 0; 6563394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 656454c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6565394ed5ebSJunchao Zhang } 65669566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65679566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65689566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6570e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6571394ed5ebSJunchao Zhang 6572394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6573394ed5ebSJunchao Zhang PetscSF sf2; 6574394ed5ebSJunchao Zhang nroots = nroots2; 6575394ed5ebSJunchao Zhang nleaves = nleaves2; 65769566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65779566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6579394ed5ebSJunchao Zhang p = 0; 6580394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 658154c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6582394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6583394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65846497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6585394ed5ebSJunchao Zhang } 6586394ed5ebSJunchao Zhang } 65879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6588394ed5ebSJunchao Zhang 6589394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6590394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6591394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65929566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6593834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6594834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6595de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6596de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6597834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6598834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6599834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6600834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6601394ed5ebSJunchao Zhang 66029566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 66039566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6604394ed5ebSJunchao Zhang 6605394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6606394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 66079566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6608394ed5ebSJunchao Zhang 6609651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6610651b1cf9SStefano Zampini PetscCount *Cperm1; 6611834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6612de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6613651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6614834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6615651b1cf9SStefano Zampini 6616651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6617651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6618651b1cf9SStefano Zampini PetscBool hypre; 661917b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6620651b1cf9SStefano Zampini if (hypre) { 6621651b1cf9SStefano Zampini PetscInt *minj; 6622651b1cf9SStefano Zampini PetscBT hasdiag; 6623651b1cf9SStefano Zampini 6624651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6625651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 66261690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6627651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6628651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6629651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6630651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6631651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6632651b1cf9SStefano Zampini } 6633651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6634651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6635651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6636651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6637651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6638651b1cf9SStefano Zampini } 6639651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6640651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6641651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6642651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6643651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6644651b1cf9SStefano Zampini } 6645651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6646651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6647651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6648651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6649651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6650651b1cf9SStefano Zampini } 6651651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6652651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6653651b1cf9SStefano Zampini } 6654651b1cf9SStefano Zampini 6655651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6656651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6657651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6658651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6659394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6660394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6661394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6662394ed5ebSJunchao Zhang 6663651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66649566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6665651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66669566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6667394ed5ebSJunchao Zhang 6668394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6669394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6670394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6671394ed5ebSJunchao Zhang 66729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6676394ed5ebSJunchao Zhang 6677394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6678158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6679158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6680158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6681158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6682394ed5ebSJunchao Zhang 66839566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66849566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6685158ec288SJunchao Zhang 6686158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6687158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6688158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6689158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6690158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6691158ec288SJunchao Zhang 6692158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6693158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6694158ec288SJunchao Zhang 6695158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6696158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6697158ec288SJunchao Zhang 6698158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6699158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6700158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6701158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 67029566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 67039566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6704e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 67059566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6706394ed5ebSJunchao Zhang 6707158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6708158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6709158ec288SJunchao Zhang 6710394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6711394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6712394ed5ebSJunchao Zhang PetscInt *Aj_new; 67139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 67149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 67159566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6716394ed5ebSJunchao Zhang Aj = Aj_new; 6717394ed5ebSJunchao Zhang } 6718394ed5ebSJunchao Zhang 6719394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6720394ed5ebSJunchao Zhang PetscInt *Bj_new; 67219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 67229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 67239566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6724394ed5ebSJunchao Zhang Bj = Bj_new; 6725394ed5ebSJunchao Zhang } 6726394ed5ebSJunchao Zhang 6727cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6728394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6729cbc6b225SStefano Zampini MatType rtype; 6730394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6731cf8ba265SJunchao Zhang PetscObjectState state; 67329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 67339566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6734394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67359371c9d4SSatish Balay if (cstart) { 67369371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67379371c9d4SSatish Balay } 6738c508b908SBarry Smith 67399566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6740c508b908SBarry Smith 6741c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6742c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67439566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67440da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6745c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6746c508b908SBarry Smith 6747c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6748c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67499566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67500da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6751c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6752c508b908SBarry Smith 67539566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67545bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6755cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6756462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6757cbc6b225SStefano Zampini 6758394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6759394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67609f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67619f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67629f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67639f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 676417b874c6SStefano Zampini a->maxnz = a->nz; 676517b874c6SStefano Zampini b->maxnz = b->nz; 6766394ed5ebSJunchao Zhang 6767cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67689566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67699566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67719566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6772cbc6b225SStefano Zampini 67732c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67742c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67752c4ab24aSJunchao Zhang coo->n = coo_n; 67762c4ab24aSJunchao Zhang coo->sf = sf2; 67772c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67782c4ab24aSJunchao Zhang coo->recvlen = nroots; 67792c4ab24aSJunchao Zhang coo->Annz = Annz; 67802c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67812c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67822c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67832c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67842c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67852c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67862c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67872c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67882c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67892c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67902c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67912c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67922c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67932c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67942c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67952c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67962c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67972c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67982c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67992c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 68002c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 68012c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 680249abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 68032c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 68042c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 68053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6806394ed5ebSJunchao Zhang } 6807394ed5ebSJunchao Zhang 6808d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6809d71ae5a4SJacob Faibussowitsch { 6810394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6811394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6812394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 68132c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 68142c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 68152c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 68162c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 68172c4ab24aSJunchao Zhang const PetscCount *Cperm1; 68182c4ab24aSJunchao Zhang PetscContainer container; 68192c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6820394ed5ebSJunchao Zhang 6821394ed5ebSJunchao Zhang PetscFunctionBegin; 68222c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 68232c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 68242c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 68252c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 68262c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 68272c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 68282c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 68292c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 68302c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 68312c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 68322c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 68332c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 68342c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68352c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68362c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68372c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68382c4ab24aSJunchao Zhang 68399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6841394ed5ebSJunchao Zhang 6842394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68432c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6844394ed5ebSJunchao Zhang 6845394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68462c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6847394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68482c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6849da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6850158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6851158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6852394ed5ebSJunchao Zhang } 68532c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6854158ec288SJunchao Zhang PetscScalar sum = 0.0; 6855158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6856158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6857394ed5ebSJunchao Zhang } 68582c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6859394ed5ebSJunchao Zhang 6860394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68612c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6862394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6863394ed5ebSJunchao Zhang } 68642c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6865394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6866394ed5ebSJunchao Zhang } 68679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6870394ed5ebSJunchao Zhang } 6871394ed5ebSJunchao Zhang 6872ccd8e176SBarry Smith /*MC 6873ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6874ccd8e176SBarry Smith 6875ccd8e176SBarry Smith Options Database Keys: 687611a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6877ccd8e176SBarry Smith 6878ccd8e176SBarry Smith Level: beginner 68790cd7f59aSBarry Smith 68800cd7f59aSBarry Smith Notes: 68812ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68820cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68830cd7f59aSBarry Smith in the matrix 68840cd7f59aSBarry Smith 688511a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 688611a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6887ccd8e176SBarry Smith 68881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6889ccd8e176SBarry Smith M*/ 6890d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6891d71ae5a4SJacob Faibussowitsch { 6892ccd8e176SBarry Smith Mat_MPIAIJ *b; 6893ccd8e176SBarry Smith PetscMPIInt size; 6894ccd8e176SBarry Smith 6895ccd8e176SBarry Smith PetscFunctionBegin; 68969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68972205254eSKarl Rupp 68984dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6899ccd8e176SBarry Smith B->data = (void *)b; 6900aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6901ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6902ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6903ccd8e176SBarry Smith b->size = size; 69042205254eSKarl Rupp 69059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6906ccd8e176SBarry Smith 6907ccd8e176SBarry Smith /* build cache for off array entries formed */ 69089566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 69092205254eSKarl Rupp 6910ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6911f4259b30SLisandro Dalcin b->colmap = NULL; 6912f4259b30SLisandro Dalcin b->garray = NULL; 6913ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6914ccd8e176SBarry Smith 6915ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 69160298fd71SBarry Smith b->lvec = NULL; 69170298fd71SBarry Smith b->Mvctx = NULL; 6918ccd8e176SBarry Smith 6919ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6920f4259b30SLisandro Dalcin b->rowindices = NULL; 6921f4259b30SLisandro Dalcin b->rowvalues = NULL; 6922ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6923ccd8e176SBarry Smith 6924f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 69250298fd71SBarry Smith b->spptr = NULL; 6926f60c3dc2SHong Zhang 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 69299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 69319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 69329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6933674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 69359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69383d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69403d0639e7SStefano Zampini #endif 6941d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6942d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6943d5e393b6SSuyash Tandon #endif 69443d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69463d0639e7SStefano Zampini #endif 69479779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6949191b95cbSRichard Tran Mills #endif 69509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69545d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69565d7652ecSHong Zhang #endif 6957d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6959d24d4204SJose E. Roman #endif 69609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69623dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69653dad0653Sstefano_zampini #endif 69669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69709566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6972ccd8e176SBarry Smith } 697381824310SBarry Smith 69745d83a8b1SBarry Smith /*@ 697511a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 697603bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 697703bfb495SBarry Smith 6978d083f849SBarry Smith Collective 697903bfb495SBarry Smith 698003bfb495SBarry Smith Input Parameters: 698103bfb495SBarry Smith + comm - MPI communicator 698211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 698303bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6984d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69852ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69862ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69872ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6988483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 698904ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 699003bfb495SBarry Smith . a - matrix values 6991483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69922ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 699303bfb495SBarry Smith - oa - matrix values 699403bfb495SBarry Smith 699503bfb495SBarry Smith Output Parameter: 699603bfb495SBarry Smith . mat - the matrix 699703bfb495SBarry Smith 699803bfb495SBarry Smith Level: advanced 699903bfb495SBarry Smith 700003bfb495SBarry Smith Notes: 7001f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 7002292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 700303bfb495SBarry Smith 70042ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 700503bfb495SBarry Smith 70062ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 700703bfb495SBarry Smith 70087b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 70097b55108eSBarry Smith 7010dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 7011dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 7012dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 7013dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 701411a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 7015dca341c0SJed Brown communication if it is known that only local entries will be set. 701603bfb495SBarry Smith 70171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 7018db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 70192b26979fSBarry Smith @*/ 7020d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 7021d71ae5a4SJacob Faibussowitsch { 702203bfb495SBarry Smith Mat_MPIAIJ *maij; 702303bfb495SBarry Smith 702403bfb495SBarry Smith PetscFunctionBegin; 702508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 7026aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 7027aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 70289566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 70299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 70309566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 703103bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 70322205254eSKarl Rupp 70338d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 703403bfb495SBarry Smith 70359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 703703bfb495SBarry Smith 70389566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70399566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 704003bfb495SBarry Smith 70419566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70449566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70459566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 704703bfb495SBarry Smith } 704803bfb495SBarry Smith 70494e84afc0SStefano Zampini typedef struct { 70504e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70514e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70524e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70534e84afc0SStefano Zampini 70544e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70554e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70564e84afc0SStefano Zampini PetscScalar *bufa; 70574e84afc0SStefano Zampini Mat P_oth; 70584e84afc0SStefano Zampini 70594e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7060ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70614e84afc0SStefano Zampini 7062ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70634e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70644e84afc0SStefano Zampini of the temporary storage */ 70654e84afc0SStefano Zampini PetscBool reusesym; 70664e84afc0SStefano Zampini 70674e84afc0SStefano Zampini /* support for COO values insertion */ 7068ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7069ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7070ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7071ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7072c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7073c215019aSStefano Zampini PetscMemType mtype; 70744e84afc0SStefano Zampini 70754e84afc0SStefano Zampini /* customization */ 70764e84afc0SStefano Zampini PetscBool abmerge; 7077abb89eb1SStefano Zampini PetscBool P_oth_bind; 70784e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70794e84afc0SStefano Zampini 7080ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7081d71ae5a4SJacob Faibussowitsch { 70824e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70834e84afc0SStefano Zampini PetscInt i; 70844e84afc0SStefano Zampini 70854e84afc0SStefano Zampini PetscFunctionBegin; 70869566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70879566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70889566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70899566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 709348a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70949566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70959566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70969566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70979566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70989566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70999566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 71003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71014e84afc0SStefano Zampini } 71024e84afc0SStefano Zampini 7103fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7104fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7105fff043a9SJunchao Zhang */ 7106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7107d71ae5a4SJacob Faibussowitsch { 7108c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7109c215019aSStefano Zampini 7110c215019aSStefano Zampini PetscFunctionBegin; 71119566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7112c215019aSStefano Zampini if (f) { 71139566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7114c215019aSStefano Zampini } else { 7115c215019aSStefano Zampini const PetscScalar *vv; 7116c215019aSStefano Zampini 71179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7118c215019aSStefano Zampini if (n && idx) { 7119c215019aSStefano Zampini PetscScalar *w = v; 7120c215019aSStefano Zampini const PetscInt *oi = idx; 7121c215019aSStefano Zampini PetscInt j; 7122c215019aSStefano Zampini 7123c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7124c215019aSStefano Zampini } else { 71259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7126c215019aSStefano Zampini } 71279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7128c215019aSStefano Zampini } 71293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7130c215019aSStefano Zampini } 7131c215019aSStefano Zampini 7132d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7133d71ae5a4SJacob Faibussowitsch { 71344e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71354e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71364e84afc0SStefano Zampini 71374e84afc0SStefano Zampini PetscFunctionBegin; 71384e84afc0SStefano Zampini MatCheckProduct(C, 1); 713928b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71404e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71414e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 714248a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 714348a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71444e84afc0SStefano Zampini } 71454e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7146abb89eb1SStefano Zampini 7147abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 714808401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71499566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7150abb89eb1SStefano Zampini } 71514e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71526497c311SBarry Smith PetscInt noff; 71534e84afc0SStefano Zampini 71546497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71554e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71564e84afc0SStefano Zampini if (noff) { 71576497c311SBarry Smith PetscInt nown; 7158c215019aSStefano Zampini 71596497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71624e84afc0SStefano Zampini n_o += noff; 71634e84afc0SStefano Zampini n_d += nown; 71644e84afc0SStefano Zampini } else { 7165c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7166c215019aSStefano Zampini 71679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71684e84afc0SStefano Zampini n_d += mm->nz; 71694e84afc0SStefano Zampini } 71704e84afc0SStefano Zampini } 7171c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71729566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71739566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71744e84afc0SStefano Zampini } 71759566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71774e84afc0SStefano Zampini } 71784e84afc0SStefano Zampini 71794e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71804e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7181d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7182d71ae5a4SJacob Faibussowitsch { 71834e84afc0SStefano Zampini Mat_Product *product = C->product; 7184ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71854e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71864e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71874e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71884e84afc0SStefano Zampini IS glob = NULL; 71894e84afc0SStefano Zampini const char *prefix; 71904e84afc0SStefano Zampini char pprefix[256]; 71914e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 719282a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 719382a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7194ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7195ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7196ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7197ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7198ddea5d60SJunchao Zhang 71994e84afc0SStefano Zampini MatProductType ptype; 7200d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 72014e84afc0SStefano Zampini PetscMPIInt size; 72024e84afc0SStefano Zampini 72034e84afc0SStefano Zampini PetscFunctionBegin; 72044e84afc0SStefano Zampini MatCheckProduct(C, 1); 720528b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 72064e84afc0SStefano Zampini ptype = product->type; 7207b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7208fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7209fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7210fa046f9fSJunchao Zhang } 72114e84afc0SStefano Zampini switch (ptype) { 72124e84afc0SStefano Zampini case MATPRODUCT_AB: 72134e84afc0SStefano Zampini A = product->A; 72144e84afc0SStefano Zampini P = product->B; 72154e84afc0SStefano Zampini m = A->rmap->n; 72164e84afc0SStefano Zampini n = P->cmap->n; 72174e84afc0SStefano Zampini M = A->rmap->N; 72184e84afc0SStefano Zampini N = P->cmap->N; 7219ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 72204e84afc0SStefano Zampini break; 72214e84afc0SStefano Zampini case MATPRODUCT_AtB: 72224e84afc0SStefano Zampini P = product->A; 72234e84afc0SStefano Zampini A = product->B; 72244e84afc0SStefano Zampini m = P->cmap->n; 72254e84afc0SStefano Zampini n = A->cmap->n; 72264e84afc0SStefano Zampini M = P->cmap->N; 72274e84afc0SStefano Zampini N = A->cmap->N; 72284e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72294e84afc0SStefano Zampini break; 72304e84afc0SStefano Zampini case MATPRODUCT_PtAP: 72314e84afc0SStefano Zampini A = product->A; 72324e84afc0SStefano Zampini P = product->B; 72334e84afc0SStefano Zampini m = P->cmap->n; 72344e84afc0SStefano Zampini n = P->cmap->n; 72354e84afc0SStefano Zampini M = P->cmap->N; 72364e84afc0SStefano Zampini N = P->cmap->N; 72374e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72384e84afc0SStefano Zampini break; 7239d71ae5a4SJacob Faibussowitsch default: 7240d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72414e84afc0SStefano Zampini } 72429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72434e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72444e84afc0SStefano Zampini 72454e84afc0SStefano Zampini /* defaults */ 72464e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72474e84afc0SStefano Zampini mp[i] = NULL; 72484e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72494e84afc0SStefano Zampini rmapt[i] = -1; 72504e84afc0SStefano Zampini cmapt[i] = -1; 72514e84afc0SStefano Zampini rmapa[i] = NULL; 72524e84afc0SStefano Zampini cmapa[i] = NULL; 72534e84afc0SStefano Zampini } 72544e84afc0SStefano Zampini 72554e84afc0SStefano Zampini /* customization */ 72569566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72574e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72584e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72594e84afc0SStefano Zampini if (product->api_user) { 7260d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72629566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7263d0609cedSBarry Smith PetscOptionsEnd(); 72644e84afc0SStefano Zampini } else { 7265d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7268d0609cedSBarry Smith PetscOptionsEnd(); 7269abb89eb1SStefano Zampini } 7270abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7271abb89eb1SStefano Zampini if (product->api_user) { 7272d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7274d0609cedSBarry Smith PetscOptionsEnd(); 7275abb89eb1SStefano Zampini } else { 7276d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72779566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7278d0609cedSBarry Smith PetscOptionsEnd(); 72794e84afc0SStefano Zampini } 72804e84afc0SStefano Zampini } 72814e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72824e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72869566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72879566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7288ddea5d60SJunchao Zhang 7289ddea5d60SJunchao Zhang cp = 0; 72904e84afc0SStefano Zampini switch (ptype) { 72914e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72929566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72934e84afc0SStefano Zampini 7294ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7295ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72964e84afc0SStefano Zampini /* P is product->B */ 72979566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72989566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72999566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73019566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73029566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73039566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73044e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73059566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73069566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73084e84afc0SStefano Zampini rmapt[cp] = 1; 73094e84afc0SStefano Zampini cmapt[cp] = 2; 73104e84afc0SStefano Zampini cmapa[cp] = globidx; 73114e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73124e84afc0SStefano Zampini cp++; 7313ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 73149566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 73159566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73169566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73189566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73199566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73204e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73219566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73229566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73234e84afc0SStefano Zampini rmapt[cp] = 1; 73244e84afc0SStefano Zampini cmapt[cp] = 1; 73254e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73264e84afc0SStefano Zampini cp++; 73279566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 73289566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73309566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73319566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73329566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73334e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73349566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73359566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73364e84afc0SStefano Zampini rmapt[cp] = 1; 73374e84afc0SStefano Zampini cmapt[cp] = 2; 73384e84afc0SStefano Zampini cmapa[cp] = p->garray; 73394e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73404e84afc0SStefano Zampini cp++; 73414e84afc0SStefano Zampini } 7342ddea5d60SJunchao Zhang 7343ddea5d60SJunchao Zhang /* A_off * P_other */ 73444e84afc0SStefano Zampini if (mmdata->P_oth) { 73459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73469566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7347f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73489566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73499566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73509566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73519566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73529566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73539566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73549566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73554e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73569566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73579566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73584e84afc0SStefano Zampini rmapt[cp] = 1; 73594e84afc0SStefano Zampini cmapt[cp] = 2; 73604e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73614e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73624e84afc0SStefano Zampini cp++; 73634e84afc0SStefano Zampini } 73644e84afc0SStefano Zampini break; 7365ddea5d60SJunchao Zhang 73664e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73674e84afc0SStefano Zampini /* A is product->B */ 73689566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7369ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73709566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73719566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73729566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73739566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73749566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73759566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73764e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73779566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73789566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73799566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73804e84afc0SStefano Zampini rmapt[cp] = 2; 73814e84afc0SStefano Zampini rmapa[cp] = globidx; 73824e84afc0SStefano Zampini cmapt[cp] = 2; 73834e84afc0SStefano Zampini cmapa[cp] = globidx; 73844e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73854e84afc0SStefano Zampini cp++; 73864e84afc0SStefano Zampini } else { 73879566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73889566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73899566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73909566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73919566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73929566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73934e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73949566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73959566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73974e84afc0SStefano Zampini rmapt[cp] = 1; 73984e84afc0SStefano Zampini cmapt[cp] = 2; 73994e84afc0SStefano Zampini cmapa[cp] = globidx; 74004e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74014e84afc0SStefano Zampini cp++; 74029566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 74039566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74049566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74059566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74069566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74079566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74084e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74099566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74109566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74114e84afc0SStefano Zampini rmapt[cp] = 2; 74124e84afc0SStefano Zampini rmapa[cp] = p->garray; 74134e84afc0SStefano Zampini cmapt[cp] = 2; 74144e84afc0SStefano Zampini cmapa[cp] = globidx; 74154e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74164e84afc0SStefano Zampini cp++; 74174e84afc0SStefano Zampini } 74184e84afc0SStefano Zampini break; 74194e84afc0SStefano Zampini case MATPRODUCT_PtAP: 74209566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 74214e84afc0SStefano Zampini /* P is product->B */ 74229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 74239566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 74249566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 74259566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74269566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74279566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74289566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74294e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74309566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74319566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 74334e84afc0SStefano Zampini rmapt[cp] = 2; 74344e84afc0SStefano Zampini rmapa[cp] = globidx; 74354e84afc0SStefano Zampini cmapt[cp] = 2; 74364e84afc0SStefano Zampini cmapa[cp] = globidx; 74374e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74384e84afc0SStefano Zampini cp++; 74394e84afc0SStefano Zampini if (mmdata->P_oth) { 74409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74419566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7442f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74439566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74449566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74459566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74469566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74479566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74489566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74499566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74504e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74519566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74529566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74534e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74544e84afc0SStefano Zampini cp++; 74559566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74569566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74579566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74589566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74599566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74609566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74614e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74629566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74639566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74644e84afc0SStefano Zampini rmapt[cp] = 2; 74654e84afc0SStefano Zampini rmapa[cp] = globidx; 74664e84afc0SStefano Zampini cmapt[cp] = 2; 74674e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74684e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74694e84afc0SStefano Zampini cp++; 74704e84afc0SStefano Zampini } 74714e84afc0SStefano Zampini break; 7472d71ae5a4SJacob Faibussowitsch default: 7473d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74744e84afc0SStefano Zampini } 74754e84afc0SStefano Zampini /* sanity check */ 74769371c9d4SSatish Balay if (size > 1) 74779371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74784e84afc0SStefano Zampini 74799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7480ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7481ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7482ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7483ddea5d60SJunchao Zhang } 74844e84afc0SStefano Zampini mmdata->cp = cp; 74854e84afc0SStefano Zampini C->product->data = mmdata; 74864e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74874e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74884e84afc0SStefano Zampini 7489c215019aSStefano Zampini /* memory type */ 7490c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7492d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7494c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7495d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74963214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7497c215019aSStefano Zampini 74984e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7499ddea5d60SJunchao Zhang 7500ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7501ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7502ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7503ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7504ddea5d60SJunchao Zhang */ 75054e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 75064e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75074e84afc0SStefano Zampini if (mptmp[cp]) continue; 7508ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 75094e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75104e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75114e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75124e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75134e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75144e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75154e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75164e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7517ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7518ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 75194e84afc0SStefano Zampini } 75204e84afc0SStefano Zampini } else ncoo_d += mm->nz; 75214e84afc0SStefano Zampini } 7522ddea5d60SJunchao Zhang 7523ddea5d60SJunchao Zhang /* 7524ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7525ddea5d60SJunchao Zhang 7526ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7527ddea5d60SJunchao Zhang 7528d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7529ddea5d60SJunchao Zhang 7530ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7531ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7532ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7533ddea5d60SJunchao Zhang 7534ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7535da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7536ddea5d60SJunchao Zhang */ 75379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7539ddea5d60SJunchao Zhang 7540ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7541ddea5d60SJunchao Zhang if (hasoffproc) { 75424e84afc0SStefano Zampini PetscSF msf; 75434e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75444e84afc0SStefano Zampini 75459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75479566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7548ddea5d60SJunchao Zhang 75494e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75504e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75514e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75524e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7553ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75544e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75554e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75564e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75574e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75584e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75594e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75604e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75614e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75624e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75634e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75644e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75654e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75664e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7567ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75684e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75694e84afc0SStefano Zampini *coi++ = gr; 75704e84afc0SStefano Zampini *idxoff++ = j; 75714e84afc0SStefano Zampini } 75724e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75734e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75744e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75754e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75764e84afc0SStefano Zampini } else { /* offdiag */ 75774e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75784e84afc0SStefano Zampini } 75794e84afc0SStefano Zampini ncoo_o += nz; 7580ddea5d60SJunchao Zhang } else { /* this is a local row */ 75814e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75824e84afc0SStefano Zampini } 75834e84afc0SStefano Zampini } 75844e84afc0SStefano Zampini } 75854e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75864e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75874e84afc0SStefano Zampini } 75884e84afc0SStefano Zampini 75899566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75906497c311SBarry Smith PetscInt incoo_o; 75916497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75926497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75939566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75949566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75954e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75979566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75989566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75999566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 76009566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 76019566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7602ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 76039566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 76044e84afc0SStefano Zampini coo_i = coo_i2; 76054e84afc0SStefano Zampini coo_j = coo_j2; 76064e84afc0SStefano Zampini } else { /* no offproc values insertion */ 76074e84afc0SStefano Zampini ncoo = ncoo_d; 76089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7609c215019aSStefano Zampini 76109566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 76119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 76129566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 76134e84afc0SStefano Zampini } 7614c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 76154e84afc0SStefano Zampini 7616ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 76174e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 76184e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 76194e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 76204e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 76214e84afc0SStefano Zampini const PetscInt *jj = mm->j; 76224e84afc0SStefano Zampini const PetscInt *ii = mm->i; 76234e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 76244e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 76254e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 76264e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 76274e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 76284e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 76294e84afc0SStefano Zampini 76304e84afc0SStefano Zampini if (mptmp[cp]) continue; 7631ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7632ddea5d60SJunchao Zhang /* fill coo_i */ 76334e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76344e84afc0SStefano Zampini const PetscInt gr = i + rs; 76354e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76364e84afc0SStefano Zampini } 7637ddea5d60SJunchao Zhang /* fill coo_j */ 7638ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76399566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7640ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7641ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7642ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76434e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76444e84afc0SStefano Zampini } 76454e84afc0SStefano Zampini ncoo_d += mm->nz; 7646ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76474e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76484e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76494e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76504e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7651ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76524e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7653ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76544e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76554e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76564e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7657ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76584e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76594e84afc0SStefano Zampini } 76604e84afc0SStefano Zampini ncoo_d += nz; 76614e84afc0SStefano Zampini } 76624e84afc0SStefano Zampini } 76634e84afc0SStefano Zampini } 76644e84afc0SStefano Zampini } 766548a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 766748a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76689566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7669ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76709566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76714e84afc0SStefano Zampini 767239cfb508SMark Adams /* set block sizes */ 767339cfb508SMark Adams A = product->A; 767439cfb508SMark Adams P = product->B; 767539cfb508SMark Adams switch (ptype) { 767639cfb508SMark Adams case MATPRODUCT_PtAP: 767739cfb508SMark Adams if (P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 767839cfb508SMark Adams break; 767939cfb508SMark Adams case MATPRODUCT_RARt: 768039cfb508SMark Adams if (P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 768139cfb508SMark Adams break; 768239cfb508SMark Adams case MATPRODUCT_ABC: 768339cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 768439cfb508SMark Adams break; 768539cfb508SMark Adams case MATPRODUCT_AB: 768639cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 768739cfb508SMark Adams break; 768839cfb508SMark Adams case MATPRODUCT_AtB: 768939cfb508SMark Adams if (A->cmap->bs > 1 || P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 769039cfb508SMark Adams break; 769139cfb508SMark Adams case MATPRODUCT_ABt: 769239cfb508SMark Adams if (A->rmap->bs > 1 || P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 769339cfb508SMark Adams break; 769439cfb508SMark Adams default: 769539cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 769639cfb508SMark Adams } 769739cfb508SMark Adams 76984e84afc0SStefano Zampini /* preallocate with COO data */ 76999566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 77009566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 77013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77024e84afc0SStefano Zampini } 77034e84afc0SStefano Zampini 7704d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7705d71ae5a4SJacob Faibussowitsch { 77064e84afc0SStefano Zampini Mat_Product *product = mat->product; 77074e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 77084e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7709abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 77104e84afc0SStefano Zampini #else 77114e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 77124e84afc0SStefano Zampini #endif 77134e84afc0SStefano Zampini 77144e84afc0SStefano Zampini PetscFunctionBegin; 77154e84afc0SStefano Zampini MatCheckProduct(mat, 1); 77164e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 771748a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 771865e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7719abb89eb1SStefano Zampini switch (product->type) { 7720abb89eb1SStefano Zampini case MATPRODUCT_AB: 7721abb89eb1SStefano Zampini if (product->api_user) { 7722d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 77239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7724d0609cedSBarry Smith PetscOptionsEnd(); 7725abb89eb1SStefano Zampini } else { 7726d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 77279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7728d0609cedSBarry Smith PetscOptionsEnd(); 7729abb89eb1SStefano Zampini } 7730abb89eb1SStefano Zampini break; 7731abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7732abb89eb1SStefano Zampini if (product->api_user) { 7733d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 77349566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7735d0609cedSBarry Smith PetscOptionsEnd(); 7736abb89eb1SStefano Zampini } else { 7737d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 77389566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7739d0609cedSBarry Smith PetscOptionsEnd(); 7740abb89eb1SStefano Zampini } 7741abb89eb1SStefano Zampini break; 7742abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7743abb89eb1SStefano Zampini if (product->api_user) { 7744d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 77459566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7746d0609cedSBarry Smith PetscOptionsEnd(); 7747abb89eb1SStefano Zampini } else { 7748d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 77499566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7750d0609cedSBarry Smith PetscOptionsEnd(); 7751abb89eb1SStefano Zampini } 7752abb89eb1SStefano Zampini break; 7753d71ae5a4SJacob Faibussowitsch default: 7754d71ae5a4SJacob Faibussowitsch break; 7755abb89eb1SStefano Zampini } 7756abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7757abb89eb1SStefano Zampini } 77584e84afc0SStefano Zampini #endif 77594e84afc0SStefano Zampini if (match) { 77604e84afc0SStefano Zampini switch (product->type) { 77614e84afc0SStefano Zampini case MATPRODUCT_AB: 77624e84afc0SStefano Zampini case MATPRODUCT_AtB: 7763d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7764d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7765d71ae5a4SJacob Faibussowitsch break; 7766d71ae5a4SJacob Faibussowitsch default: 7767d71ae5a4SJacob Faibussowitsch break; 77684e84afc0SStefano Zampini } 77694e84afc0SStefano Zampini } 77704e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77719566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 777381824310SBarry Smith } 777498921bdaSJacob Faibussowitsch 777598921bdaSJacob Faibussowitsch /* 777672833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 777772833a62Smarkadams4 777872833a62Smarkadams4 n - the number of block indices in cc[] 777972833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 778072833a62Smarkadams4 */ 7781d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7782d71ae5a4SJacob Faibussowitsch { 778372833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 778472833a62Smarkadams4 const PetscInt *idx; 778572833a62Smarkadams4 778672833a62Smarkadams4 PetscFunctionBegin; 778772833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 778872833a62Smarkadams4 if (nidx) { 778972833a62Smarkadams4 cnt = 0; 779072833a62Smarkadams4 cc[cnt] = idx[0] / bs; 779172833a62Smarkadams4 for (j = 1; j < nidx; j++) { 779272833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 779372833a62Smarkadams4 } 779472833a62Smarkadams4 } 779572833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 779672833a62Smarkadams4 *n = cnt + 1; 77973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 779872833a62Smarkadams4 } 779972833a62Smarkadams4 780072833a62Smarkadams4 /* 780172833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 780272833a62Smarkadams4 780372833a62Smarkadams4 ncollapsed - the number of block indices 780472833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 780572833a62Smarkadams4 */ 7806d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7807d71ae5a4SJacob Faibussowitsch { 780872833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 780972833a62Smarkadams4 781072833a62Smarkadams4 PetscFunctionBegin; 781172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 781272833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 781372833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 781472833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 78159371c9d4SSatish Balay cprevtmp = cprev; 78169371c9d4SSatish Balay cprev = merged; 78179371c9d4SSatish Balay merged = cprevtmp; 781872833a62Smarkadams4 } 781972833a62Smarkadams4 *ncollapsed = nprev; 782072833a62Smarkadams4 if (collapsed) *collapsed = cprev; 78213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782272833a62Smarkadams4 } 782372833a62Smarkadams4 78242d776b49SBarry Smith /* 782572833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 782672833a62Smarkadams4 782772833a62Smarkadams4 Input Parameter: 782872833a62Smarkadams4 . Amat - matrix 782972833a62Smarkadams4 - symmetrize - make the result symmetric 783072833a62Smarkadams4 + scale - scale with diagonal 783172833a62Smarkadams4 783272833a62Smarkadams4 Output Parameter: 783372833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 783472833a62Smarkadams4 783572833a62Smarkadams4 */ 7836e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7837d71ae5a4SJacob Faibussowitsch { 783872833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 783972833a62Smarkadams4 MPI_Comm comm; 784072833a62Smarkadams4 Mat Gmat; 784172833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 784272833a62Smarkadams4 Mat a, b, c; 784372833a62Smarkadams4 MatType jtype; 784472833a62Smarkadams4 784572833a62Smarkadams4 PetscFunctionBegin; 784672833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 784772833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 784872833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 784972833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 785072833a62Smarkadams4 nloc = (Iend - Istart) / bs; 785172833a62Smarkadams4 785272833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 785372833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 785472833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 785572833a62Smarkadams4 785672833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 785772833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 785872833a62Smarkadams4 implementation */ 785972833a62Smarkadams4 if (bs > 1) { 786072833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 786172833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 786272833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 786372833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 786472833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 786572833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 786672833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78672cf69117Smarkadams4 MatScalar *aa, val, *AA; 78682cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78696497c311SBarry Smith 78709371c9d4SSatish Balay if (isseqaij) { 78719371c9d4SSatish Balay a = Amat; 78729371c9d4SSatish Balay b = NULL; 78739371c9d4SSatish Balay } else { 787472833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78759371c9d4SSatish Balay a = d->A; 78769371c9d4SSatish Balay b = d->B; 787772833a62Smarkadams4 } 787872833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 787932603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 788072833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78812cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 788259ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78836497c311SBarry Smith 788459ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 788559ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 788659ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 788759ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 788872833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 788959ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 789059ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 789159ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 789259ee9f9fSPierre Jolivet else { 789359ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 789459ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 789559ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 789672833a62Smarkadams4 } 789759ee9f9fSPierre Jolivet } 789859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 789959ee9f9fSPierre Jolivet } 790059ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 790172833a62Smarkadams4 if (!ok) { 790272833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 790359ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 790472833a62Smarkadams4 goto old_bs; 790572833a62Smarkadams4 } 790672833a62Smarkadams4 } 790772833a62Smarkadams4 } 790872833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 790972833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 791072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 79112cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 791272833a62Smarkadams4 // diag 791372833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 791472833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 79156497c311SBarry Smith 791672833a62Smarkadams4 ai = aseq->i; 791772833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 791872833a62Smarkadams4 aj = aseq->j + ai[brow]; 79196497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 792072833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 792172833a62Smarkadams4 val = 0; 7922e02fb3cdSMark Adams if (index_size == 0) { 79236497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 792472833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 79256497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 792672833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 792772833a62Smarkadams4 } 792872833a62Smarkadams4 } 7929e02fb3cdSMark Adams } else { // use (index,index) value if provided 79306497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79316497c311SBarry Smith PetscInt ii = index[iii]; 7932e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 79336497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 79346497c311SBarry Smith PetscInt jj = index[jjj]; 7935cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7936e02fb3cdSMark Adams } 7937e02fb3cdSMark Adams } 7938e02fb3cdSMark Adams } 7939835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 794072833a62Smarkadams4 AA[k / bs] = val; 794172833a62Smarkadams4 } 794272833a62Smarkadams4 grow = Istart / bs + brow / bs; 794366521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 794472833a62Smarkadams4 } 794572833a62Smarkadams4 // off-diag 794672833a62Smarkadams4 if (ismpiaij) { 794772833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 794872833a62Smarkadams4 const PetscScalar *vals; 794972833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 79506497c311SBarry Smith 795172833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 795272833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 795372833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 79546497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 795559ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 795672833a62Smarkadams4 AA[k / bs] = 0; 795772833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 795872833a62Smarkadams4 } 795972833a62Smarkadams4 nc = ncols / bs; 796072833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7961e02fb3cdSMark Adams if (index_size == 0) { 79626497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 796372833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79646497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79656497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7966835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 796772833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 796872833a62Smarkadams4 } 796972833a62Smarkadams4 } 797072833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 797172833a62Smarkadams4 } 7972e02fb3cdSMark Adams } else { // use (index,index) value if provided 79736497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79746497c311SBarry Smith PetscInt ii = index[iii]; 7975e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79766497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79776497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79786497c311SBarry Smith PetscInt jj = index[jjj]; 7979e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7980e02fb3cdSMark Adams } 7981e02fb3cdSMark Adams } 7982e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7983e02fb3cdSMark Adams } 7984e02fb3cdSMark Adams } 798572833a62Smarkadams4 grow = Istart / bs + brow / bs; 798666521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 798772833a62Smarkadams4 } 798872833a62Smarkadams4 } 798972833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 799072833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79912cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 799272833a62Smarkadams4 } else { 799372833a62Smarkadams4 const PetscScalar *vals; 799472833a62Smarkadams4 const PetscInt *idx; 799572833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 799672833a62Smarkadams4 old_bs: 799772833a62Smarkadams4 /* 799872833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 799972833a62Smarkadams4 */ 800072833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 800132603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 800272833a62Smarkadams4 if (isseqaij) { 800372833a62Smarkadams4 PetscInt max_d_nnz; 80046497c311SBarry Smith 800572833a62Smarkadams4 /* 800672833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 800772833a62Smarkadams4 */ 800872833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 800972833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 801072833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 801148a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 801272833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 801372833a62Smarkadams4 } else if (ismpiaij) { 801472833a62Smarkadams4 Mat Daij, Oaij; 801572833a62Smarkadams4 const PetscInt *garray; 801672833a62Smarkadams4 PetscInt max_d_nnz; 80176497c311SBarry Smith 801872833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 801972833a62Smarkadams4 /* 802072833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 802172833a62Smarkadams4 */ 802272833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 802372833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 802472833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 802548a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 802672833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 802772833a62Smarkadams4 /* 802872833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 802972833a62Smarkadams4 */ 803072833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 803172833a62Smarkadams4 o_nnz[jj] = 0; 803272833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 803372833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 803472833a62Smarkadams4 o_nnz[jj] += ncols; 803572833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 803672833a62Smarkadams4 } 803772833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 803872833a62Smarkadams4 } 803972833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 804072833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 804172833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 804272833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 804372833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 804472833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 804572833a62Smarkadams4 PetscInt dest_row = Ii / bs; 80466497c311SBarry Smith 804772833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 804872833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 804972833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 805072833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 80516497c311SBarry Smith 805272833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 805372833a62Smarkadams4 } 805472833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 805572833a62Smarkadams4 } 805672833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 805772833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 805872833a62Smarkadams4 } 805972833a62Smarkadams4 } else { 80602d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80612d776b49SBarry Smith else { 80622d776b49SBarry Smith Gmat = Amat; 80632d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80642d776b49SBarry Smith } 80659371c9d4SSatish Balay if (isseqaij) { 80669371c9d4SSatish Balay a = Gmat; 80679371c9d4SSatish Balay b = NULL; 80689371c9d4SSatish Balay } else { 806972833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80709371c9d4SSatish Balay a = d->A; 80719371c9d4SSatish Balay b = d->B; 807272833a62Smarkadams4 } 80732d776b49SBarry Smith if (filter >= 0 || scale) { 80742d776b49SBarry Smith /* take absolute value of each entry */ 807572833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 807672833a62Smarkadams4 MatInfo info; 807772833a62Smarkadams4 PetscScalar *avals; 80786497c311SBarry Smith 807972833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 808072833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 808172833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 808272833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 808372833a62Smarkadams4 } 808472833a62Smarkadams4 } 80852d776b49SBarry Smith } 808672833a62Smarkadams4 if (symmetrize) { 8087b94d7dedSBarry Smith PetscBool isset, issym; 80886497c311SBarry Smith 8089b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8090b94d7dedSBarry Smith if (!isset || !issym) { 809172833a62Smarkadams4 Mat matTrans; 80926497c311SBarry Smith 809372833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80941fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 809572833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 809672833a62Smarkadams4 } 809772833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80982d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 809972833a62Smarkadams4 if (scale) { 810072833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 810172833a62Smarkadams4 Vec diag; 81026497c311SBarry Smith 810372833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 810472833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 810572833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 810672833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 810772833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 810872833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 810972833a62Smarkadams4 } 811072833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 81112d776b49SBarry Smith if (filter >= 0) { 81122ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 81132ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 81142d776b49SBarry Smith } 811572833a62Smarkadams4 *a_Gmat = Gmat; 81163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 811772833a62Smarkadams4 } 811872833a62Smarkadams4 811972833a62Smarkadams4 /* 812098921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 812198921bdaSJacob Faibussowitsch */ 812298921bdaSJacob Faibussowitsch 812398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 81249566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 81259566063dSJacob Faibussowitsch #undef PetscCall 81269371c9d4SSatish Balay #define PetscCall(...) \ 81279371c9d4SSatish Balay do { \ 81285f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 812998921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 813098921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 813198921bdaSJacob Faibussowitsch return; \ 813298921bdaSJacob Faibussowitsch } \ 813398921bdaSJacob Faibussowitsch } while (0) 813498921bdaSJacob Faibussowitsch 813598921bdaSJacob Faibussowitsch #undef SETERRQ 81369371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 81379371c9d4SSatish Balay do { \ 813898921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 813998921bdaSJacob Faibussowitsch return; \ 814098921bdaSJacob Faibussowitsch } while (0) 814198921bdaSJacob Faibussowitsch 814298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 814398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 814498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 814598921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 814698921bdaSJacob Faibussowitsch #else 814798921bdaSJacob Faibussowitsch #endif 8148d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8149d71ae5a4SJacob Faibussowitsch { 815098921bdaSJacob Faibussowitsch Mat mat = *mmat; 815198921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 815298921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 815398921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 815498921bdaSJacob Faibussowitsch PetscScalar value; 815598921bdaSJacob Faibussowitsch 815698921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 815798921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81585f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 815998921bdaSJacob Faibussowitsch { 816098921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 816198921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 816298921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 816398921bdaSJacob Faibussowitsch 816498921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 816598921bdaSJacob Faibussowitsch Mat A = aij->A; 816698921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 816798921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 816898921bdaSJacob Faibussowitsch MatScalar *aa; 8169f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 817098921bdaSJacob Faibussowitsch Mat B = aij->B; 817198921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 817298921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 817398921bdaSJacob Faibussowitsch MatScalar *ba; 817498921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 817598921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 817698921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 817798921bdaSJacob Faibussowitsch 817898921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 817998921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 818098921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 818198921bdaSJacob Faibussowitsch 818298921bdaSJacob Faibussowitsch PetscFunctionBegin; 81839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 818598921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 818698921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81876bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 818898921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 818998921bdaSJacob Faibussowitsch row = im[i] - rstart; 819098921bdaSJacob Faibussowitsch lastcol1 = -1; 819198921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 819298921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 819398921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 819498921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 819598921bdaSJacob Faibussowitsch low1 = 0; 819698921bdaSJacob Faibussowitsch high1 = nrow1; 819798921bdaSJacob Faibussowitsch lastcol2 = -1; 819898921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 819998921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 820098921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 820198921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 820298921bdaSJacob Faibussowitsch low2 = 0; 820398921bdaSJacob Faibussowitsch high2 = nrow2; 820498921bdaSJacob Faibussowitsch 820598921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 820698921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 820798921bdaSJacob Faibussowitsch else value = v[i + j * m]; 820898921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 820998921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 821098921bdaSJacob Faibussowitsch col = in[j] - cstart; 821198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 821298921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 821398921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 821463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 821598921bdaSJacob Faibussowitsch } else { 821698921bdaSJacob Faibussowitsch if (mat->was_assembled) { 821748a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 821898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8219eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 822098921bdaSJacob Faibussowitsch col--; 822198921bdaSJacob Faibussowitsch #else 822298921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 822398921bdaSJacob Faibussowitsch #endif 8224f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8225eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 822698921bdaSJacob Faibussowitsch col = in[j]; 822798921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 822898921bdaSJacob Faibussowitsch B = aij->B; 822998921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 82309371c9d4SSatish Balay bimax = b->imax; 82319371c9d4SSatish Balay bi = b->i; 82329371c9d4SSatish Balay bilen = b->ilen; 82339371c9d4SSatish Balay bj = b->j; 823498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 823598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 823698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 823798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 823898921bdaSJacob Faibussowitsch low2 = 0; 823998921bdaSJacob Faibussowitsch high2 = nrow2; 824098921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 824198921bdaSJacob Faibussowitsch ba = b->a; 824298921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 824398921bdaSJacob Faibussowitsch } 824498921bdaSJacob Faibussowitsch } else col = in[j]; 824598921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 824698921bdaSJacob Faibussowitsch } 824798921bdaSJacob Faibussowitsch } 824898921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 824998921bdaSJacob Faibussowitsch if (roworiented) { 82509566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 825198921bdaSJacob Faibussowitsch } else { 82529566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 825398921bdaSJacob Faibussowitsch } 825498921bdaSJacob Faibussowitsch } 825598921bdaSJacob Faibussowitsch } 82569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 825898921bdaSJacob Faibussowitsch } 825998921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 826098921bdaSJacob Faibussowitsch } 826172833a62Smarkadams4 826298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 826398921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 826498921bdaSJacob Faibussowitsch * original definitions */ 82659566063dSJacob Faibussowitsch #undef PetscCall 826698921bdaSJacob Faibussowitsch #undef SETERRQ 8267