xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision c0c276a7a9f347b22187dda26ae7d35d5b9ed8a2)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4170c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
6139566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
61498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6150587a0fcSBarry Smith             }
616c48de900SBarry Smith           } else col = in[j];
6178d76821aSHong Zhang           nonew = b->nonew;
618d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6191eb62cbbSBarry Smith         }
6201eb62cbbSBarry Smith       }
6215ef9f2a5SBarry Smith     } else {
62228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62390f02eecSBarry Smith       if (!aij->donotstash) {
6245080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
625d36fbae8SSatish Balay         if (roworiented) {
6268e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
627d36fbae8SSatish Balay         } else {
6288e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6294b0e389bSBarry Smith         }
6301eb62cbbSBarry Smith       }
6318a729477SBarry Smith     }
63290f02eecSBarry Smith   }
6335519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6368a729477SBarry Smith }
6378a729477SBarry Smith 
6382b08fdbeSandi selinger /*
639904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6402b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
641904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6422b08fdbeSandi selinger */
643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
644d71ae5a4SJacob Faibussowitsch {
645904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
646904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6474cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
648904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
649904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
650904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
651904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
652904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6536dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
654904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
655904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
656904d1e70Sandi selinger 
657904d1e70Sandi selinger   PetscFunctionBegin;
658904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
659904d1e70Sandi selinger   for (j = 0; j < am; j++) {
660904d1e70Sandi selinger     dnz = onz = 0;
661904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6626dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
663904d1e70Sandi selinger       /* If column is in the diagonal */
664904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
665904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
666904d1e70Sandi selinger         dnz++;
667904d1e70Sandi selinger       } else { /* off-diagonal entries */
668904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
669904d1e70Sandi selinger         onz++;
670904d1e70Sandi selinger       }
671904d1e70Sandi selinger     }
672904d1e70Sandi selinger     ailen[j] = dnz;
673904d1e70Sandi selinger     bilen[j] = onz;
674904d1e70Sandi selinger   }
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676904d1e70Sandi selinger }
677904d1e70Sandi selinger 
678904d1e70Sandi selinger /*
679904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
680904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6811de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6821de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6831de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
684904d1e70Sandi selinger */
685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
686d71ae5a4SJacob Faibussowitsch {
6873a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6883a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6894cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
690f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6923a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6933a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6943a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6953a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6966dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6971de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
698904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
699904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
7003a063d27Sandi selinger 
7013a063d27Sandi selinger   PetscFunctionBegin;
7023a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7033a063d27Sandi selinger   for (j = 0; j < am; j++) {
704904d1e70Sandi selinger     dnz_row = onz_row = 0;
705904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
706904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
707e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
708e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
709ae8e66a0Sandi selinger       /* If column is in the diagonal */
7103a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
711904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
712904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
713904d1e70Sandi selinger         dnz_row++;
714ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
715904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
716904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
717904d1e70Sandi selinger         onz_row++;
7183a063d27Sandi selinger       }
7193a063d27Sandi selinger     }
720904d1e70Sandi selinger     ailen[j] = dnz_row;
721904d1e70Sandi selinger     bilen[j] = onz_row;
7223a063d27Sandi selinger   }
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7243a063d27Sandi selinger }
7253a063d27Sandi selinger 
726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
727d71ae5a4SJacob Faibussowitsch {
728b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
729d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
730d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
731b49de8d1SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
733b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
737b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
738b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
74054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
741b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
742b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7439566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
744fa852ad4SSatish Balay       } else {
74548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
747eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
748fa46199cSSatish Balay         col--;
749b1fc9764SSatish Balay #else
750905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
751b1fc9764SSatish Balay #endif
752e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
754b49de8d1SLois Curfman McInnes       }
755b49de8d1SLois Curfman McInnes     }
756b49de8d1SLois Curfman McInnes   }
7573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
758b49de8d1SLois Curfman McInnes }
759bc5ccf88SSatish Balay 
760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
761d71ae5a4SJacob Faibussowitsch {
762bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
763b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
764bc5ccf88SSatish Balay 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7663ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
767bc5ccf88SSatish Balay 
7689566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7699566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772bc5ccf88SSatish Balay }
773bc5ccf88SSatish Balay 
774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
775d71ae5a4SJacob Faibussowitsch {
776bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
777b1d57f15SBarry Smith   PetscMPIInt  n;
778b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
779e44c0bd4SBarry Smith   PetscInt    *row, *col;
780ace3abfcSBarry Smith   PetscBool    other_disassembled;
78187828ca2SBarry Smith   PetscScalar *val;
782bc5ccf88SSatish Balay 
78391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7846e111a19SKarl Rupp 
785bc5ccf88SSatish Balay   PetscFunctionBegin;
7864cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
787a2d1c673SSatish Balay     while (1) {
7889566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
789a2d1c673SSatish Balay       if (!flg) break;
790a2d1c673SSatish Balay 
791bc5ccf88SSatish Balay       for (i = 0; i < n;) {
792bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7932205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7942205254eSKarl Rupp           if (row[j] != rstart) break;
7952205254eSKarl Rupp         }
796bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
797bc5ccf88SSatish Balay         else ncols = n - i;
798bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7999566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
800bc5ccf88SSatish Balay         i = j;
801bc5ccf88SSatish Balay       }
802bc5ccf88SSatish Balay     }
8039566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
804bc5ccf88SSatish Balay   }
8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
806c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8079ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8089ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8109566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8119ecce9b1SRichard Tran Mills   }
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
815bc5ccf88SSatish Balay 
816bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
817071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
818bc5ccf88SSatish Balay   /*
819bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
820bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
821bc5ccf88SSatish Balay   */
822bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
823462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
82435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
825eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
826ad59fb31SSatish Balay     }
827ad59fb31SSatish Balay   }
82848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
831c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
832e2cf4d64SStefano Zampini #endif
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
835bc5ccf88SSatish Balay 
8369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8372205254eSKarl Rupp 
838f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
839a30b2313SHong Zhang 
8409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
841e56f5c9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
843f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
845462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
848c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
849e2cf4d64SStefano Zampini #endif
8503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
851bc5ccf88SSatish Balay }
852bc5ccf88SSatish Balay 
853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
854d71ae5a4SJacob Faibussowitsch {
85544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8563a40ed3dSBarry Smith 
8573a40ed3dSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8599566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8611eb62cbbSBarry Smith }
8621eb62cbbSBarry Smith 
863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
864d71ae5a4SJacob Faibussowitsch {
8651b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8661b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8676e520ac8SStefano Zampini   PetscInt    r, len;
8689939a2d1SBarry Smith   PetscBool   cong;
8691eb62cbbSBarry Smith 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
8716e520ac8SStefano Zampini   /* get locally owned rows */
8729566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8739566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
874dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87597b48c8fSBarry Smith   if (x && b) {
8761b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8771b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8781b1dd7adSMatthew G. Knepley 
87928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8819566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8821b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88597b48c8fSBarry Smith   }
886a92ad425SStefano Zampini 
887a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
890a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
892a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
893a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
894a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
895a92ad425SStefano Zampini 
896a92ad425SStefano Zampini     nnwA = aijA->nonew;
897a92ad425SStefano Zampini     nnwB = aijB->nonew;
898a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
899a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
900a92ad425SStefano Zampini     if (!nnzA) {
9019566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
902a92ad425SStefano Zampini       aijA->nonew = 0;
903a92ad425SStefano Zampini     }
904a92ad425SStefano Zampini     if (!nnzB) {
9059566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
906a92ad425SStefano Zampini       aijB->nonew = 0;
907a92ad425SStefano Zampini     }
908a92ad425SStefano Zampini     /* Must zero here before the next loop */
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9109566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9111b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9121b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
913a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9149566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
915e2d53e46SBarry Smith     }
916a92ad425SStefano Zampini     aijA->nonew = nnwA;
917a92ad425SStefano Zampini     aijB->nonew = nnwB;
9186eb55b6aSBarry Smith   } else {
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9209566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9216eb55b6aSBarry Smith   }
9229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9254f9cfa9eSBarry Smith 
9269939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
927f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9289939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
929462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9309939a2d1SBarry Smith   }
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9321eb62cbbSBarry Smith }
9331eb62cbbSBarry Smith 
934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
935d71ae5a4SJacob Faibussowitsch {
9369c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9376497c311SBarry Smith   PetscInt           n = A->rmap->n;
938131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
940131c27b5Sprj-   PetscMPIInt        p = 0;
94154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94254bd4135SMatthew G. Knepley   PetscSF            sf;
9439c7c4993SBarry Smith   const PetscScalar *xx;
944fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
945564f14d6SBarry Smith   Vec                xmask, lmask;
946564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
947564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
948564f14d6SBarry Smith   PetscScalar       *aa;
9499c7c4993SBarry Smith 
9509c7c4993SBarry Smith   PetscFunctionBegin;
95154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
957aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9585ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9599566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9605ba17502SJed Brown     }
96154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9639c7c4993SBarry Smith   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
97054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9719371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9729371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
973564f14d6SBarry Smith   /* zero diagonal part of matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9754cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9779566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
984a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
985a92ad425SStefano Zampini     PetscBool cong;
986a92ad425SStefano Zampini 
9879566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
993377aa5a1SBarry Smith   }
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9954cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
997564f14d6SBarry Smith   ii = aij->i;
9988e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
999564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
1000564f14d6SBarry Smith   if (aij->compressedrow.use) {
1001564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1002564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1003564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1004564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1005564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1006564f14d6SBarry Smith       aj = aij->j + ii[i];
1007fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1008564f14d6SBarry Smith 
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith       ridx++;
1018564f14d6SBarry Smith     }
1019564f14d6SBarry Smith   } else { /* do not use compressed row format */
1020564f14d6SBarry Smith     m = l->B->rmap->n;
1021564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1022564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1023564f14d6SBarry Smith       aj = aij->j + ii[i];
1024fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1025564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1027377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1028564f14d6SBarry Smith           *aa = 0.0;
1029564f14d6SBarry Smith         }
1030564f14d6SBarry Smith         aa++;
1031564f14d6SBarry Smith         aj++;
1032564f14d6SBarry Smith       }
1033564f14d6SBarry Smith     }
1034564f14d6SBarry Smith   }
1035a92ad425SStefano Zampini   if (x && b) {
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1038377aa5a1SBarry Smith   }
10399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10434f9cfa9eSBarry Smith 
10444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1045f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1047462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10484f9cfa9eSBarry Smith   }
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10509c7c4993SBarry Smith }
10519c7c4993SBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1053d71ae5a4SJacob Faibussowitsch {
1054416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055b1d57f15SBarry Smith   PetscInt    nt;
105619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1057416022c9SBarry Smith 
10583a40ed3dSBarry Smith   PetscFunctionBegin;
10599566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
106008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1062296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1064296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10661eb62cbbSBarry Smith }
10671eb62cbbSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1069d71ae5a4SJacob Faibussowitsch {
1070bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071bd0c2dcbSBarry Smith 
1072bd0c2dcbSBarry Smith   PetscFunctionBegin;
10739566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075bd0c2dcbSBarry Smith }
1076bd0c2dcbSBarry Smith 
1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1078d71ae5a4SJacob Faibussowitsch {
1079416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
108001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10813a40ed3dSBarry Smith 
10823a40ed3dSBarry Smith   PetscFunctionBegin;
10839566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10849566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088da3a660dSBarry Smith }
1089da3a660dSBarry Smith 
1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1091d71ae5a4SJacob Faibussowitsch {
1092416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1093da3a660dSBarry Smith 
10943a40ed3dSBarry Smith   PetscFunctionBegin;
1095da3a660dSBarry Smith   /* do nondiagonal part */
10969566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1097da3a660dSBarry Smith   /* do local part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10999613dc34SJunchao Zhang   /* add partial results together */
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1103da3a660dSBarry Smith }
1104da3a660dSBarry Smith 
1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1106d71ae5a4SJacob Faibussowitsch {
11074f423910Svictorle   MPI_Comm    comm;
1108ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1109ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1110cd0d46ebSvictorle   IS          Me, Notme;
1111b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111254d735aeSStefano Zampini   PetscBool   lf;
1113b1d57f15SBarry Smith   PetscMPIInt size;
1114cd0d46ebSvictorle 
1115cd0d46ebSvictorle   PetscFunctionBegin;
111642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1118462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11193ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11223ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112342e5f5b4Svictorle 
11247dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1128cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1129cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113366501d38Svictorle   Aoff = Aoffs[0];
11349566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113566501d38Svictorle   Boff = Boffs[0];
11369566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11389566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11419566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1143cd0d46ebSvictorle }
1144cd0d46ebSvictorle 
1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1146d71ae5a4SJacob Faibussowitsch {
1147416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1148da3a660dSBarry Smith 
11493a40ed3dSBarry Smith   PetscFunctionBegin;
1150da3a660dSBarry Smith   /* do nondiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1152da3a660dSBarry Smith   /* do local part */
11539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11549613dc34SJunchao Zhang   /* add partial results together */
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11569566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158da3a660dSBarry Smith }
1159da3a660dSBarry Smith 
11601eb62cbbSBarry Smith /*
11611eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11621eb62cbbSBarry Smith    diagonal block
11631eb62cbbSBarry Smith */
1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1165d71ae5a4SJacob Faibussowitsch {
1166416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
116908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1170aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11719566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11731eb62cbbSBarry Smith }
11741eb62cbbSBarry Smith 
1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1176d71ae5a4SJacob Faibussowitsch {
1177052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11783a40ed3dSBarry Smith 
11793a40ed3dSBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11819566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1183052efed2SBarry Smith }
1184052efed2SBarry Smith 
1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1186d71ae5a4SJacob Faibussowitsch {
11878e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11898e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11903ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11912e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119317a3732bSBarry Smith   PetscInt64         nz, hnz;
11943ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11953ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11963ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119717a3732bSBarry Smith   PetscMPIInt        rank;
11988e2fed03SBarry Smith 
11998e2fed03SBarry Smith   PetscFunctionBegin;
12009566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12013ea6fe3dSLisandro Dalcin 
12023ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12033ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12043ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12053ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12063ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12078e2fed03SBarry Smith   nz = A->nz + B->nz;
12083ea6fe3dSLisandro Dalcin 
12093ea6fe3dSLisandro Dalcin   /* write matrix header */
12100700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12119371c9d4SSatish Balay   header[1] = M;
12129371c9d4SSatish Balay   header[2] = N;
121317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1215835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12203ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12238e2fed03SBarry Smith 
12243ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12263ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12273ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12283ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12293ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12308e2fed03SBarry Smith     }
12319371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12329371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12338e2fed03SBarry Smith   }
123417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12378e2fed03SBarry Smith 
12383ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12423ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12433ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12443ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12452e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12468e2fed03SBarry Smith     }
12479371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12489371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12498e2fed03SBarry Smith   }
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125217a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12558e2fed03SBarry Smith 
12563ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12579566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12598e2fed03SBarry Smith }
12608e2fed03SBarry Smith 
12619804daf3SBarry Smith #include <petscdraw.h>
1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1263d71ae5a4SJacob Faibussowitsch {
126444a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126532dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1266ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1267b0a32e0cSBarry Smith   PetscViewer       sviewer;
1268f3ef73ceSBarry Smith   PetscViewerFormat format;
1269416022c9SBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
127432077d6dSBarry Smith   if (iascii) {
12759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1276ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12771690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1280835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1281ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1282ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1283ef5fdb51SBarry Smith         navg += nz[i];
1284ef5fdb51SBarry Smith       }
12859566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1286ef5fdb51SBarry Smith       navg = navg / size;
12879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1289ef5fdb51SBarry Smith     }
12909566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1291456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12924e220ebcSLois Curfman McInnes       MatInfo   info;
12936335e310SSatish Balay       PetscInt *inodes = NULL;
1294923f20ffSKris Buschelman 
12959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12969566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12979566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1299923f20ffSKris Buschelman       if (!inodes) {
13009371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1301835f2295SStefano Zampini                                                      info.memory));
13026831982aSBarry Smith       } else {
1303835f2295SStefano Zampini         PetscCall(
1304835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13056831982aSBarry Smith       }
13069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1315fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1316923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13179566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1318923f20ffSKris Buschelman       if (inodes) {
13199566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1320d38fa0fbSBarry Smith       } else {
13219566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1322d38fa0fbSBarry Smith       }
13233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13244aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132608480c60SBarry Smith     }
13278e2fed03SBarry Smith   } else if (isbinary) {
13288e2fed03SBarry Smith     if (size == 1) {
13299566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13309566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13318e2fed03SBarry Smith     } else {
13329566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13338e2fed03SBarry Smith     }
13343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
133571e56450SStefano Zampini   } else if (iascii && size == 1) {
13369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13379566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13390f5bd95cSBarry Smith   } else if (isdraw) {
1340b0a32e0cSBarry Smith     PetscDraw draw;
1341ace3abfcSBarry Smith     PetscBool isnull;
13429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134519bcc07fSBarry Smith   }
134619bcc07fSBarry Smith 
134771e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134871e56450SStefano Zampini     Mat A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow, iscol;
13502ee70a88SLois Curfman McInnes 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13549566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135571e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135671e56450SStefano Zampini     /*
135771e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135871e56450SStefano Zampini     IS  isrow,iscol;
135971e56450SStefano Zampini 
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13619566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1363dd400576SPatrick Sanan     if (rank == 0) {
13649566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136571e56450SStefano Zampini        A    = AA[0];
136671e56450SStefano Zampini        Av   = AA[0];
136795373324SBarry Smith     }
13689566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136971e56450SStefano Zampini */
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137255843e3eSBarry Smith     /*
137355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1374b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137555843e3eSBarry Smith     */
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1377dd400576SPatrick Sanan     if (rank == 0) {
137848a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13799566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
138095373324SBarry Smith     }
13819566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138395373324SBarry Smith   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13851eb62cbbSBarry Smith }
13861eb62cbbSBarry Smith 
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1388d71ae5a4SJacob Faibussowitsch {
1389ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1390416022c9SBarry Smith 
13913a40ed3dSBarry Smith   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139648a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398416022c9SBarry Smith }
1399416022c9SBarry Smith 
1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1401d71ae5a4SJacob Faibussowitsch {
140244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1403f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1404ace3abfcSBarry Smith   PetscBool   hasop;
14058a729477SBarry Smith 
14063a40ed3dSBarry Smith   PetscFunctionBegin;
1407a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14089566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1410a2b30743SBarry Smith   }
1411a2b30743SBarry Smith 
141248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14134e980039SJed Brown 
1414c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang 
14202798e883SHong Zhang     while (its--) {
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14232798e883SHong Zhang 
1424c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14272798e883SHong Zhang 
1428c14dc6b6SHong Zhang       /* local sweep */
14299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14302798e883SHong Zhang     }
14313a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1432da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14342798e883SHong Zhang       its--;
1435da3a660dSBarry Smith     }
14362798e883SHong Zhang     while (its--) {
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14392798e883SHong Zhang 
1440c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1443c14dc6b6SHong Zhang 
1444c14dc6b6SHong Zhang       /* local sweep */
14459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14462798e883SHong Zhang     }
14473a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1448da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14502798e883SHong Zhang       its--;
1451da3a660dSBarry Smith     }
14522798e883SHong Zhang     while (its--) {
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14552798e883SHong Zhang 
1456c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14579566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14592798e883SHong Zhang 
1460c14dc6b6SHong Zhang       /* local sweep */
14619566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14622798e883SHong Zhang     }
1463a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1464a7420bb7SBarry Smith     Vec xx1;
1465a7420bb7SBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1468a7420bb7SBarry Smith 
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1471a7420bb7SBarry Smith     if (!mat->diag) {
14729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1474a7420bb7SBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1476bd0c2dcbSBarry Smith     if (hasop) {
14779566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1478bd0c2dcbSBarry Smith     } else {
14799566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1480bd0c2dcbSBarry Smith     }
14819566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1482887ee2caSBarry Smith 
14839566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1484a7420bb7SBarry Smith 
1485a7420bb7SBarry Smith     /* local sweep */
14869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1489ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1490c14dc6b6SHong Zhang 
14919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1492a0808db4SHong Zhang 
14937b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14958a729477SBarry Smith }
1496a66be287SLois Curfman McInnes 
1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1498d71ae5a4SJacob Faibussowitsch {
149972e6a0cfSJed Brown   Mat             aA, aB, Aperm;
150072e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150172e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150272e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150372e6a0cfSJed Brown   PetscSF         rowsf, sf;
15040298fd71SBarry Smith   IS              parcolp = NULL;
150572e6a0cfSJed Brown   PetscBool       done;
150642e855d1Svictor 
150742e855d1Svictor   PetscFunctionBegin;
15089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151272e6a0cfSJed Brown 
151372e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151772e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
152072e6a0cfSJed Brown 
152172e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152572e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152972e6a0cfSJed Brown 
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15329566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153372e6a0cfSJed Brown 
153472e6a0cfSJed Brown   /* Find out where my gcols should go */
15359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154372e6a0cfSJed Brown 
15449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15469566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154772e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1548131c27b5Sprj-     PetscInt    row = rdest[i];
1549131c27b5Sprj-     PetscMPIInt rowner;
15509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155172e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1552131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1553131c27b5Sprj-       PetscMPIInt cowner;
15549566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155672e6a0cfSJed Brown       else onnz[i]++;
155772e6a0cfSJed Brown     }
155872e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1559131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1560131c27b5Sprj-       PetscMPIInt cowner;
15619566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156272e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156372e6a0cfSJed Brown       else onnz[i]++;
156472e6a0cfSJed Brown     }
156572e6a0cfSJed Brown   }
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15709566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157172e6a0cfSJed Brown 
15729566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157572e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157672e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1577970468b0SJed Brown     PetscInt  j0, rowlen;
157872e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1584970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1585970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15869566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1587970468b0SJed Brown     }
158872e6a0cfSJed Brown   }
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15979566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15989566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159972e6a0cfSJed Brown   *B = Aperm;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160142e855d1Svictor }
160242e855d1Svictor 
1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1604d71ae5a4SJacob Faibussowitsch {
1605c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1606c5e4d11fSDmitry Karpeev 
1607c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1609c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611c5e4d11fSDmitry Karpeev }
1612c5e4d11fSDmitry Karpeev 
1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1614d71ae5a4SJacob Faibussowitsch {
1615a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1616a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16173966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1618a66be287SLois Curfman McInnes 
16193a40ed3dSBarry Smith   PetscFunctionBegin;
16204e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16222205254eSKarl Rupp 
16239371c9d4SSatish Balay   isend[0] = info->nz_used;
16249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16269371c9d4SSatish Balay   isend[3] = info->memory;
16279371c9d4SSatish Balay   isend[4] = info->mallocs;
16282205254eSKarl Rupp 
16299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16302205254eSKarl Rupp 
16319371c9d4SSatish Balay   isend[0] += info->nz_used;
16329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16349371c9d4SSatish Balay   isend[3] += info->memory;
16359371c9d4SSatish Balay   isend[4] += info->mallocs;
1636a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1642a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1643462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16442205254eSKarl Rupp 
16454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1650a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1651462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16522205254eSKarl Rupp 
16534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1658a66be287SLois Curfman McInnes   }
16594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a66be287SLois Curfman McInnes }
1664a66be287SLois Curfman McInnes 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1666d71ae5a4SJacob Faibussowitsch {
1667c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1668c74985f6SBarry Smith 
16693a40ed3dSBarry Smith   PetscFunctionBegin;
167012c028f9SKris Buschelman   switch (op) {
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1674a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16760ad02fcaSStefano Zampini   case MAT_USE_INODES:
167712c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16781a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1679fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168212c028f9SKris Buschelman     break;
168312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168443674050SBarry Smith     MatCheckPreallocated(A, 1);
16854e0d8c25SBarry Smith     a->roworiented = flg;
16862205254eSKarl Rupp 
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168912c028f9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1691d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1694ffa07934SHong Zhang   case MAT_SPD:
169577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1697bf108f30SBarry Smith   case MAT_HERMITIAN:
1698bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1700b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1701b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17029725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170377e54ba9SKris Buschelman     break;
1704d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1705d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1706d71ae5a4SJacob Faibussowitsch     break;
1707d71ae5a4SJacob Faibussowitsch   default:
1708888c827cSStefano Zampini     break;
17093a40ed3dSBarry Smith   }
17103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1711c74985f6SBarry Smith }
1712c74985f6SBarry Smith 
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1714d71ae5a4SJacob Faibussowitsch {
1715154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1717d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1718d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1719b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172039e00950SLois Curfman McInnes 
17213a40ed3dSBarry Smith   PetscFunctionBegin;
172228b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17237a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17247a0afa10SBarry Smith 
172570f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17267a0afa10SBarry Smith     /*
17277a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17287a0afa10SBarry Smith     */
17297a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1730b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1731d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17327a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17332205254eSKarl Rupp       if (max < tmp) max = tmp;
17347a0afa10SBarry Smith     }
17359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17367a0afa10SBarry Smith   }
17377a0afa10SBarry Smith 
1738aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1739abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174039e00950SLois Curfman McInnes 
17419371c9d4SSatish Balay   pvA = &vworkA;
17429371c9d4SSatish Balay   pcA = &cworkA;
17439371c9d4SSatish Balay   pvB = &vworkB;
17449371c9d4SSatish Balay   pcB = &cworkB;
17459371c9d4SSatish Balay   if (!v) {
17469371c9d4SSatish Balay     pvA = NULL;
17479371c9d4SSatish Balay     pvB = NULL;
17489371c9d4SSatish Balay   }
17499371c9d4SSatish Balay   if (!idx) {
17509371c9d4SSatish Balay     pcA = NULL;
17519371c9d4SSatish Balay     if (!v) pcB = NULL;
17529371c9d4SSatish Balay   }
17539566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17549566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1755154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1756154123eaSLois Curfman McInnes 
175770f0671dSBarry Smith   cmap = mat->garray;
1758154123eaSLois Curfman McInnes   if (v || idx) {
1759154123eaSLois Curfman McInnes     if (nztot) {
1760154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1761b1d57f15SBarry Smith       PetscInt imark = -1;
1762154123eaSLois Curfman McInnes       if (v) {
176370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176439e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1766154123eaSLois Curfman McInnes           else break;
1767154123eaSLois Curfman McInnes         }
1768154123eaSLois Curfman McInnes         imark = i;
176970f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177070f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1771154123eaSLois Curfman McInnes       }
1772154123eaSLois Curfman McInnes       if (idx) {
177370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177470f0671dSBarry Smith         if (imark > -1) {
1775ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177670f0671dSBarry Smith         } else {
1777154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177870f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1779154123eaSLois Curfman McInnes             else break;
1780154123eaSLois Curfman McInnes           }
1781154123eaSLois Curfman McInnes           imark = i;
178270f0671dSBarry Smith         }
178370f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178470f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178539e00950SLois Curfman McInnes       }
17863f97c4b0SBarry Smith     } else {
1787f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1788f4259b30SLisandro Dalcin       if (v) *v = NULL;
17891ca473b0SSatish Balay     }
1790154123eaSLois Curfman McInnes   }
179139e00950SLois Curfman McInnes   *nz = nztot;
17929566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17939566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179539e00950SLois Curfman McInnes }
179639e00950SLois Curfman McInnes 
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1798d71ae5a4SJacob Faibussowitsch {
17997a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18003a40ed3dSBarry Smith 
18013a40ed3dSBarry Smith   PetscFunctionBegin;
180228b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18037a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180539e00950SLois Curfman McInnes }
180639e00950SLois Curfman McInnes 
1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1808d71ae5a4SJacob Faibussowitsch {
1809855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1810ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1811d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1812329f5518SBarry Smith   PetscReal        sum = 0.0;
1813fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181404ca555eSLois Curfman McInnes 
18153a40ed3dSBarry Smith   PetscFunctionBegin;
181617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18179566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181837fa93a5SLois Curfman McInnes   } else {
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1822fff043a9SJunchao Zhang       v = amata;
182304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18249371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18259371c9d4SSatish Balay         v++;
182604ca555eSLois Curfman McInnes       }
1827fff043a9SJunchao Zhang       v = bmata;
182804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18299371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18309371c9d4SSatish Balay         v++;
183104ca555eSLois Curfman McInnes       }
1832462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18338f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18349566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18353a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1836e91c04dfSPierre Jolivet       PetscReal *tmp;
1837b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18389566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
183904ca555eSLois Curfman McInnes       *norm = 0.0;
18409371c9d4SSatish Balay       v     = amata;
18419371c9d4SSatish Balay       jj    = amat->j;
184204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18439371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18449371c9d4SSatish Balay         v++;
184504ca555eSLois Curfman McInnes       }
18469371c9d4SSatish Balay       v  = bmata;
18479371c9d4SSatish Balay       jj = bmat->j;
184804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18499371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18509371c9d4SSatish Balay         v++;
185104ca555eSLois Curfman McInnes       }
1852e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1853d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1854e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
185504ca555eSLois Curfman McInnes       }
18569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18579566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18583a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1859329f5518SBarry Smith       PetscReal ntemp = 0.0;
1860d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18618e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186204ca555eSLois Curfman McInnes         sum = 0.0;
186304ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18649371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18659371c9d4SSatish Balay           v++;
186604ca555eSLois Curfman McInnes         }
18678e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186804ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18699371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18709371c9d4SSatish Balay           v++;
187104ca555eSLois Curfman McInnes         }
1872515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187304ca555eSLois Curfman McInnes       }
1874462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18759566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1876ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187937fa93a5SLois Curfman McInnes   }
18803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1881855ac2c5SLois Curfman McInnes }
1882855ac2c5SLois Curfman McInnes 
1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1884d71ae5a4SJacob Faibussowitsch {
1885a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1886a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1887071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1888071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1889a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1890ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1891b7c46309SBarry Smith 
18923a40ed3dSBarry Smith   PetscFunctionBegin;
18937fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18949371c9d4SSatish Balay   ma = A->rmap->n;
18959371c9d4SSatish Balay   na = A->cmap->n;
18969371c9d4SSatish Balay   mb = a->B->rmap->n;
18979371c9d4SSatish Balay   nb = a->B->cmap->n;
18989371c9d4SSatish Balay   ai = Aloc->i;
18999371c9d4SSatish Balay   aj = Aloc->j;
19009371c9d4SSatish Balay   bi = Bloc->i;
19019371c9d4SSatish Balay   bj = Bloc->j;
1902fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190380bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190480bcc5a1SJed Brown     PetscSFNode         *oloc;
1905713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190680bcc5a1SJed Brown 
19079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190880bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1910cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191180bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191380bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191480bcc5a1SJed Brown     /* map those to global */
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19219566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1922d4bb536fSBarry Smith 
19239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19269566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19289566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1929fc4dec0aSBarry Smith   } else {
1930fc4dec0aSBarry Smith     B = *matout;
19319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1932fc4dec0aSBarry Smith   }
1933b7c46309SBarry Smith 
1934f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1935a8661f62Sandi selinger   A_diag      = a->A;
1936a8661f62Sandi selinger   B_diag      = &b->A;
1937a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1938a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1939a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1940a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1941f79cb1a0Sandi selinger 
1942f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1943ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1944f79cb1a0Sandi selinger 
19454cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1946a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19477fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19489566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1949f79cb1a0Sandi selinger 
1950b7c46309SBarry Smith   /* copy over the B part */
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1953ce496241SStefano Zampini   pbv = bv;
1954d0f46423SBarry Smith   row = A->rmap->rstart;
19552205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195661a2fbbaSHong Zhang   cols_tmp = cols;
1957da668accSHong Zhang   for (i = 0; i < mb; i++) {
1958da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19599566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19602205254eSKarl Rupp     row++;
1961720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1962720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1963b7c46309SBarry Smith   }
19649566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1966fc73b1b3SBarry Smith 
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1969cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19700de55854SLois Curfman McInnes     *matout = B;
19710de55854SLois Curfman McInnes   } else {
19729566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19730de55854SLois Curfman McInnes   }
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975b7c46309SBarry Smith }
1976b7c46309SBarry Smith 
1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1978d71ae5a4SJacob Faibussowitsch {
19794b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19804b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1981b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1982a008b906SSatish Balay 
19833a40ed3dSBarry Smith   PetscFunctionBegin;
19849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19854b967eb1SSatish Balay   if (rr) {
19869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198708401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19884b967eb1SSatish Balay     /* Overlap communication with computation. */
19899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1990a008b906SSatish Balay   }
19914b967eb1SSatish Balay   if (ll) {
19929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199308401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1994dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19954b967eb1SSatish Balay   }
19964b967eb1SSatish Balay   /* scale  the diagonal block */
1997dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19984b967eb1SSatish Balay 
19994b967eb1SSatish Balay   if (rr) {
20004b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20019566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2002dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20034b967eb1SSatish Balay   }
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005a008b906SSatish Balay }
2006a008b906SSatish Balay 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2008d71ae5a4SJacob Faibussowitsch {
2009bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20103a40ed3dSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2014bb5a7306SBarry Smith }
2015bb5a7306SBarry Smith 
2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2017d71ae5a4SJacob Faibussowitsch {
2018d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2019d4bb536fSBarry Smith   Mat         a, b, c, d;
2020ace3abfcSBarry Smith   PetscBool   flg;
2021d4bb536fSBarry Smith 
20223a40ed3dSBarry Smith   PetscFunctionBegin;
20239371c9d4SSatish Balay   a = matA->A;
20249371c9d4SSatish Balay   b = matA->B;
20259371c9d4SSatish Balay   c = matB->A;
20269371c9d4SSatish Balay   d = matB->B;
2027d4bb536fSBarry Smith 
20289566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2030462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2032d4bb536fSBarry Smith }
2033d4bb536fSBarry Smith 
2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2035d71ae5a4SJacob Faibussowitsch {
2036cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2037cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2038cb5b572fSBarry Smith 
2039cb5b572fSBarry Smith   PetscFunctionBegin;
204033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204133f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2042cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2043cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2044cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2045cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2046cb5b572fSBarry Smith        then copying the submatrices */
20479566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2048cb5b572fSBarry Smith   } else {
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2051cb5b572fSBarry Smith   }
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2054cb5b572fSBarry Smith }
2055cb5b572fSBarry Smith 
2056001ddc4fSHong Zhang /*
2057001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2058001ddc4fSHong Zhang    have different nonzero structure.
2059001ddc4fSHong Zhang */
2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2061d71ae5a4SJacob Faibussowitsch {
2062001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206395b7e79eSJed Brown 
206495b7e79eSJed Brown   PetscFunctionBegin;
206595b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206695b7e79eSJed Brown   for (i = 0; i < m; i++) {
20678e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2068001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2069001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207095b7e79eSJed Brown     nnz[i] = 0;
207195b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2072001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2073001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207495b7e79eSJed Brown       nnz[i]++;
207595b7e79eSJed Brown     }
207695b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207795b7e79eSJed Brown   }
20783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207995b7e79eSJed Brown }
208095b7e79eSJed Brown 
2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2083d71ae5a4SJacob Faibussowitsch {
2084001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2087001ddc4fSHong Zhang 
2088001ddc4fSHong Zhang   PetscFunctionBegin;
20899566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2091001ddc4fSHong Zhang }
2092001ddc4fSHong Zhang 
2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2094d71ae5a4SJacob Faibussowitsch {
2095ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2096ac90fabeSBarry Smith 
2097ac90fabeSBarry Smith   PetscFunctionBegin;
2098ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2101ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2103ac90fabeSBarry Smith   } else {
21049f5f6813SShri Abhyankar     Mat       B;
21059f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2106d9d719b4SStefano Zampini 
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21179566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2120ac90fabeSBarry Smith   }
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122ac90fabeSBarry Smith }
2123ac90fabeSBarry Smith 
21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2125354c94deSBarry Smith 
2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2127d71ae5a4SJacob Faibussowitsch {
21285f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21295f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2130354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2131354c94deSBarry Smith 
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21339566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21345f80ce2aSJacob Faibussowitsch   }
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2136354c94deSBarry Smith }
2137354c94deSBarry Smith 
2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2139d71ae5a4SJacob Faibussowitsch {
214099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214199cafbc1SBarry Smith 
214299cafbc1SBarry Smith   PetscFunctionBegin;
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21449566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214699cafbc1SBarry Smith }
214799cafbc1SBarry Smith 
2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2149d71ae5a4SJacob Faibussowitsch {
215099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215199cafbc1SBarry Smith 
215299cafbc1SBarry Smith   PetscFunctionBegin;
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21549566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215699cafbc1SBarry Smith }
215799cafbc1SBarry Smith 
2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2159d71ae5a4SJacob Faibussowitsch {
2160c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2161475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216262e5df07SMark Adams   PetscScalar       *vv;
2163475b8b61SHong Zhang   Vec                vB, vA;
216462e5df07SMark Adams   const PetscScalar *va, *vb;
2165c91732d9SHong Zhang 
2166c91732d9SHong Zhang   PetscFunctionBegin;
2167c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2169475b8b61SHong Zhang 
217062e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2171c91732d9SHong Zhang   if (idx) {
2172475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2173d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2174c91732d9SHong Zhang     }
2175c91732d9SHong Zhang   }
2176c91732d9SHong Zhang 
2177c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21799566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2180c91732d9SHong Zhang 
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2183475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2184c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2185475b8b61SHong Zhang       vv[i] = vb[i];
2186c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2187475b8b61SHong Zhang     } else {
2188475b8b61SHong Zhang       vv[i] = va[i];
21899371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2190c91732d9SHong Zhang     }
2191c91732d9SHong Zhang   }
219262e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219362e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21959566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199c91732d9SHong Zhang }
2200c91732d9SHong Zhang 
2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2202eede4a3fSMark Adams {
2203eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2789f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
2793d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2794c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27993acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2800b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28075bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28086cff0a6bSPierre Jolivet                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
281526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28234222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28262fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
28355494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
28373b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2838d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
2840c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
2842f4259b30SLisandro Dalcin                                        NULL,
2843b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2848f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2849a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2850bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2851a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28527dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
2856187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
28669c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2867a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28684222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2869f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2870f4259b30SLisandro Dalcin                                        NULL,
287172833a62Smarkadams4                                        NULL,
287272833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28732d776b49SBarry Smith                                        NULL,
2874dec0b466SHong Zhang                                        /*150*/ NULL,
2875eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28764cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
287742ce410bSJunchao Zhang                                        NULL,
287842ce410bSJunchao Zhang                                        NULL,
2879fe1fc275SAlexander                                        /*155*/ NULL,
2880fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
288136ce4990SBarry Smith 
2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2883d71ae5a4SJacob Faibussowitsch {
28842e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28852e8a6d31SBarry Smith 
28862e8a6d31SBarry Smith   PetscFunctionBegin;
28879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28889566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28902e8a6d31SBarry Smith }
28912e8a6d31SBarry Smith 
2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2893d71ae5a4SJacob Faibussowitsch {
28942e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28952e8a6d31SBarry Smith 
28962e8a6d31SBarry Smith   PetscFunctionBegin;
28979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28989566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29002e8a6d31SBarry Smith }
29018a729477SBarry Smith 
2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2903d71ae5a4SJacob Faibussowitsch {
2904ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29055d2a9ed1SStefano Zampini   PetscMPIInt size;
2906a23d5eceSKris Buschelman 
2907a23d5eceSKris Buschelman   PetscFunctionBegin;
2908ad79cf63SBarry Smith   if (B->hash_active) {
2909aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2910ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2911ad79cf63SBarry Smith   }
29129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2914899cda47SBarry Smith 
2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2916eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2917cb7b82ddSBarry Smith #else
29189566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2919cb7b82ddSBarry Smith #endif
29209566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29229566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2923cb7b82ddSBarry Smith 
29249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2925c508b908SBarry Smith 
2926c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29279566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2932c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2933cb7b82ddSBarry Smith 
2934c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2935ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29369566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29389566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29399566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2940c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2941899cda47SBarry Smith 
29429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2944526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2945cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
294615001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2948a23d5eceSKris Buschelman }
2949a23d5eceSKris Buschelman 
2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2951d71ae5a4SJacob Faibussowitsch {
2952ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2953846b4da1SFande Kong 
2954846b4da1SFande Kong   PetscFunctionBegin;
2955846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2958eb14dd14SAlex Lindsay   if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
2959eb14dd14SAlex Lindsay   else {
2960846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2961eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&b->colmap));
2962846b4da1SFande Kong #else
29639566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->colmap));
2964846b4da1SFande Kong #endif
29659566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->garray));
29669566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&b->lvec));
2967eb14dd14SAlex Lindsay   }
29689566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2969846b4da1SFande Kong 
29709566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29719566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2972846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2973846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2974846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2976846b4da1SFande Kong }
2977846b4da1SFande Kong 
2978d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2979d71ae5a4SJacob Faibussowitsch {
2980d6dfbf8fSBarry Smith   Mat         mat;
2981416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2982d6dfbf8fSBarry Smith 
29833a40ed3dSBarry Smith   PetscFunctionBegin;
2984f4259b30SLisandro Dalcin   *newmat = NULL;
29859566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29869566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29879566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29889566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2989273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2990e1b6402fSHong Zhang 
2991d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2992501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2993e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2994d6dfbf8fSBarry Smith 
299517699dbbSLois Curfman McInnes   a->size         = oldmat->size;
299617699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2997e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2998e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2999501880eeSStefano Zampini   a->rowindices   = NULL;
3000501880eeSStefano Zampini   a->rowvalues    = NULL;
3001bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
3002d6dfbf8fSBarry Smith 
30039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
30049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3005420957c1SBarry Smith   if (matin->hash_active) {
3006420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3007420957c1SBarry Smith   } else {
3008420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30092ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3010aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3011eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3012b1fc9764SSatish Balay #else
30139566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30149566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3015b1fc9764SSatish Balay #endif
3016501880eeSStefano Zampini     } else a->colmap = NULL;
30173f41c07dSBarry Smith     if (oldmat->garray) {
3018b1d57f15SBarry Smith       PetscInt len;
3019d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30219566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3022501880eeSStefano Zampini     } else a->garray = NULL;
3023d6dfbf8fSBarry Smith 
30240de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30250de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30260de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3027aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3028cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3029cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3030cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3031cff58d65SJunchao Zhang     }
30329566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30339566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3034420957c1SBarry Smith   }
30359566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30368a729477SBarry Smith   *newmat = mat;
30373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30388a729477SBarry Smith }
3039416022c9SBarry Smith 
3040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3041d71ae5a4SJacob Faibussowitsch {
304252f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
304352f91c60SVaclav Hapla 
304452f91c60SVaclav Hapla   PetscFunctionBegin;
304552f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
304652f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3047c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30489566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30499566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
305152f91c60SVaclav Hapla   if (isbinary) {
30529566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
305352f91c60SVaclav Hapla   } else if (ishdf5) {
305452f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30559566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
305652f91c60SVaclav Hapla #else
305752f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
305852f91c60SVaclav Hapla #endif
305952f91c60SVaclav Hapla   } else {
306098921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
306152f91c60SVaclav Hapla   }
30623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
306352f91c60SVaclav Hapla }
306452f91c60SVaclav Hapla 
3065d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3066d71ae5a4SJacob Faibussowitsch {
30673ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30683ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30693ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30708fb81238SShri Abhyankar 
30718fb81238SShri Abhyankar   PetscFunctionBegin;
30729566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30738fb81238SShri Abhyankar 
30743ea6fe3dSLisandro Dalcin   /* read in matrix header */
30759566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
307608401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30779371c9d4SSatish Balay   M  = header[1];
30789371c9d4SSatish Balay   N  = header[2];
30799371c9d4SSatish Balay   nz = header[3];
308008401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
308108401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
308208401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
308308ea439dSMark F. Adams 
30843ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30859566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30863ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30873ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30883ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30918fb81238SShri Abhyankar 
30923ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30939566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3094aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30958fb81238SShri Abhyankar 
30963ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30979566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
31009371c9d4SSatish Balay   rowidxs[0] = 0;
31019371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
31021690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3103462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
310408401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
310538b83642SBarry Smith   }
310638b83642SBarry Smith 
31073ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
31089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31099566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31109566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31113ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31129566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31139566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31149566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31168fb81238SShri Abhyankar }
31178fb81238SShri Abhyankar 
31183782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3119ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3120d71ae5a4SJacob Faibussowitsch {
31214aa3045dSJed Brown   IS          iscol_local;
3122c5e4d11fSDmitry Karpeev   PetscBool   isstride;
31239725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
31243782ecc7SHong Zhang 
31253782ecc7SHong Zhang   PetscFunctionBegin;
31263782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31283782ecc7SHong Zhang 
3129c5e4d11fSDmitry Karpeev   if (isstride) {
3130c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31319566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31329566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31339566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31349725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3135c5e4d11fSDmitry Karpeev   }
31363782ecc7SHong Zhang 
31379725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3138c5e4d11fSDmitry Karpeev   if (gisstride) {
3139c5e4d11fSDmitry Karpeev     PetscInt N;
31409566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31419566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31429566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31439566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3144c5e4d11fSDmitry Karpeev   } else {
3145c5bfad50SMark F. Adams     PetscInt cbs;
31469566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31479566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31489566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3149b79d0421SJed Brown   }
31503782ecc7SHong Zhang 
31513782ecc7SHong Zhang   *isseq = iscol_local;
31523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3153c5e4d11fSDmitry Karpeev }
31548d2139bdSHong Zhang 
3155ddfdf956SHong Zhang /*
31569c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31579c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3158ddfdf956SHong Zhang 
3159ddfdf956SHong Zhang  Input Parameters:
316027430b45SBarry Smith +   mat - matrix
316127430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31629c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
316327430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3164ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
316527430b45SBarry Smith 
316627430b45SBarry Smith  Output Parameters:
316727430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
316827430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
316927430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
317027430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3171ddfdf956SHong Zhang  */
3172835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3173d71ae5a4SJacob Faibussowitsch {
3174040216a4SHong Zhang   Vec             x, cmap;
3175040216a4SHong Zhang   const PetscInt *is_idx;
3176040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31779c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3178040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3179040216a4SHong Zhang   Mat             B    = a->B;
3180040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3181a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31828b3fa1f7SHong Zhang   MPI_Comm        comm;
31833a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31843782ecc7SHong Zhang 
31853782ecc7SHong Zhang   PetscFunctionBegin;
31869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31879566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31888b3fa1f7SHong Zhang 
3189ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31909566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31919566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31929566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31939566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31940a351717SHong Zhang 
31959c988bcaSHong Zhang   /* Get start indices */
31969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3197ddfdf956SHong Zhang   isstart -= ncols;
31989566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3199040216a4SHong Zhang 
32009566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
32019566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
32029566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
32039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3204ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
32058b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3206ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
32079c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
32088b3fa1f7SHong Zhang   }
32099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32109566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32119566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32128b3fa1f7SHong Zhang 
32139c988bcaSHong Zhang   /* Get iscol_d */
32149566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32159566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32169566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3217feb78a15SHong Zhang 
32189c988bcaSHong Zhang   /* Get isrow_d */
32199566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3220feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32229566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32239c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3225feb78a15SHong Zhang 
32269566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32279566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32289566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3229feb78a15SHong Zhang 
32309c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32319566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32329566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3233ddfdf956SHong Zhang 
32349566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
323507250d77SHong Zhang 
32369566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32379566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
323864efcef9SHong Zhang 
32399c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3240ddfdf956SHong Zhang   /* off-process column indices */
32419c988bcaSHong Zhang   count = 0;
32429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3244feb78a15SHong Zhang 
32459566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32469566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32478b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3248f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32499c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32501c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32511c645242SHong Zhang       count++;
32528b3fa1f7SHong Zhang     }
32538b3fa1f7SHong Zhang   }
32549566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32559566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
325607250d77SHong Zhang 
32579566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3258b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3259b6d9b4e0SHong Zhang 
32609566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32619c988bcaSHong Zhang   *garray = cmap1;
32629c988bcaSHong Zhang 
32639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32649566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32659566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3267040216a4SHong Zhang }
3268040216a4SHong Zhang 
3269b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3270d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3271d71ae5a4SJacob Faibussowitsch {
3272b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32731fd43edeSHong Zhang   Mat         M = NULL;
32743b00a383SHong Zhang   MPI_Comm    comm;
3275b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32763b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3277*c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32783b00a383SHong Zhang 
32793b00a383SHong Zhang   PetscFunctionBegin;
32809566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32813b00a383SHong Zhang 
32823b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3283b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32849566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
328528b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32863b00a383SHong Zhang 
32879566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
328828b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32893b00a383SHong Zhang 
32909566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
329128b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32923b00a383SHong Zhang 
3293b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3294b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32959566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32969566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
329748a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32989566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32999566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
33003b00a383SHong Zhang 
33013b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3302*c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3303b20e2604SHong Zhang     PetscInt  BsubN;
33043b00a383SHong Zhang 
3305b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
33069566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
33073b00a383SHong Zhang 
3308b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33099566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33109566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33113b00a383SHong Zhang 
3312*c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3313*c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3314*c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3315*c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3316*c0c276a7Ssdargavi 
33179c988bcaSHong Zhang     /* Create submatrix M */
3318*c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3319*c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3320*c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
33213b00a383SHong Zhang 
3322b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3323b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33247cfce09cSHong Zhang 
33259566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3326b20e2604SHong Zhang     n = asub->B->cmap->N;
3327b20e2604SHong Zhang     if (BsubN > n) {
3328c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33297cfce09cSHong Zhang       const PetscInt *idx;
33309c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33319566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33327cfce09cSHong Zhang 
33339566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33347cfce09cSHong Zhang       j = 0;
33359566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3336b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33377cfce09cSHong Zhang         if (j >= BsubN) break;
33389c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33397cfce09cSHong Zhang 
33409c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33417cfce09cSHong Zhang           idx_new[i] = idx[j++];
334298921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33437cfce09cSHong Zhang       }
33449566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33457cfce09cSHong Zhang 
33469566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33479566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33487cfce09cSHong Zhang 
3349b20e2604SHong Zhang     } else if (BsubN < n) {
335098921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3351b20e2604SHong Zhang     }
33527cfce09cSHong Zhang 
33539566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3354b20e2604SHong Zhang     *submat = M;
33553b00a383SHong Zhang 
3356e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33579566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33589566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33593b00a383SHong Zhang 
33609566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33619566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33623b00a383SHong Zhang 
33639566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33653b00a383SHong Zhang   }
33663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33673b00a383SHong Zhang }
33683b00a383SHong Zhang 
3369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3370d71ae5a4SJacob Faibussowitsch {
33711358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33723782ecc7SHong Zhang   PetscInt  csize;
337318e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33744a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33753782ecc7SHong Zhang   MPI_Comm  comm;
33763782ecc7SHong Zhang 
33773782ecc7SHong Zhang   PetscFunctionBegin;
3378bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3379a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33808f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33819566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3382d5761cdaSHong Zhang     if (isrow_d) {
3383d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3384d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3385d5761cdaSHong Zhang     } else {
33869566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3387d5761cdaSHong Zhang       if (iscol_local) {
3388d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3389d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3390d5761cdaSHong Zhang       }
3391d5761cdaSHong Zhang     }
33928f69fa7bSHong Zhang   } else {
3393e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
339418e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33959566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33963782ecc7SHong Zhang     if (!n) {
339718e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33983782ecc7SHong Zhang     } else {
33999566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
34009566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3401ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
34028f69fa7bSHong Zhang     }
34033782ecc7SHong Zhang 
3404e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
340518e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
34069566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
340718e627e3SHong Zhang     if (!n) {
340818e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
340918e627e3SHong Zhang     } else {
34109566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
34119566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
341218e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
341318e627e3SHong Zhang     }
341418e627e3SHong Zhang 
34159566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3416462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
341718e627e3SHong Zhang     sameRowDist = tsameDist[0];
341818e627e3SHong Zhang   }
341918e627e3SHong Zhang 
342018e627e3SHong Zhang   if (sameRowDist) {
3421b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34223b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34239566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34243ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3425b20e2604SHong Zhang     } else { /* sameRowDist */
34263b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34271358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34281358a193SHong Zhang         PetscBool sorted;
34299566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34309566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34319566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
343208401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34331358a193SHong Zhang 
34349566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34351358a193SHong Zhang         if (sorted) {
34361358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34379566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34383ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34393782ecc7SHong Zhang         }
34401358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
344148c0d076SHong Zhang         IS iscol_sub;
34429566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
344348c0d076SHong Zhang         if (iscol_sub) {
34449566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34453ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
344648c0d076SHong Zhang         }
34471358a193SHong Zhang       }
34481358a193SHong Zhang     }
34491358a193SHong Zhang   }
34503782ecc7SHong Zhang 
3451bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34523782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34539566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
345428b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34553782ecc7SHong Zhang   } else {
345648a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34571358a193SHong Zhang   }
34583782ecc7SHong Zhang 
34599566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34609566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34618f69fa7bSHong Zhang 
3462b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34639566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3465b79d0421SJed Brown   }
34663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34674aa3045dSJed Brown }
34684aa3045dSJed Brown 
3469feb78a15SHong Zhang /*@C
347011a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3471feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3472feb78a15SHong Zhang 
3473d083f849SBarry Smith   Collective
3474feb78a15SHong Zhang 
3475feb78a15SHong Zhang   Input Parameters:
3476feb78a15SHong Zhang + comm   - MPI communicator
3477*c0c276a7Ssdargavi . M      - the global row size
3478*c0c276a7Ssdargavi . N      - the global column size
3479feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3480*c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3481*c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns
3482feb78a15SHong Zhang 
3483feb78a15SHong Zhang   Output Parameter:
34842ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
348527430b45SBarry Smith 
3486feb78a15SHong Zhang   Level: advanced
3487feb78a15SHong Zhang 
3488feb78a15SHong Zhang   Notes:
348911a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
349011a5261eSBarry Smith 
3491*c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3492feb78a15SHong Zhang 
34931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3494feb78a15SHong Zhang @*/
3495*c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3496d71ae5a4SJacob Faibussowitsch {
3497*c0c276a7Ssdargavi   PetscInt m, n;
34984ab4d6f4SRichard Tran Mills   MatType  mpi_mat_type;
3499feb78a15SHong Zhang 
3500feb78a15SHong Zhang   PetscFunctionBegin;
35019566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35029566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
350308401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
350437a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3505feb78a15SHong Zhang 
3506*c0c276a7Ssdargavi   PetscCall(MatSetSizes(*mat, m, n, M, N));
35074ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35084ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35094ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35104ab4d6f4SRichard Tran Mills 
351137a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3512feb78a15SHong Zhang 
35139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35149566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3515*c0c276a7Ssdargavi   PetscCall(MatSetMPIAIJWithSplitSeqAIJ(*mat, A, B, garray));
3516*c0c276a7Ssdargavi   PetscFunctionReturn(PETSC_SUCCESS);
3517feb78a15SHong Zhang }
3518feb78a15SHong Zhang 
3519*c0c276a7Ssdargavi /*
3520*c0c276a7Ssdargavi   MatSetMPIAIJWithSplitSeqAIJ - Set the diag and offdiag matrices of a `MATMPIAIJ` matrix.
3521*c0c276a7Ssdargavi    It is similar to `MatCreateMPIAIJWithSplitArrays()`. This routine allows passing in
3522*c0c276a7Ssdargavi    B with local indices and the correct size, along with the accompanying
3523*c0c276a7Ssdargavi    garray, hence skipping compactification
3524d5761cdaSHong Zhang 
3525*c0c276a7Ssdargavi   Collective
3526d5761cdaSHong Zhang 
3527*c0c276a7Ssdargavi   Input Parameters:
3528*c0c276a7Ssdargavi +  mat    - the MATMPIAIJ matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set
3529*c0c276a7Ssdargavi .  A      - the diag matrix using local col ids
3530*c0c276a7Ssdargavi .  B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3531*c0c276a7Ssdargavi -  garray - either `NULL` or the global index of `B` columns
3532d5761cdaSHong Zhang 
3533*c0c276a7Ssdargavi   Output Parameter:
3534*c0c276a7Ssdargavi .  mat   - the updated `MATMPIAIJ` matrix
3535feb78a15SHong Zhang 
3536*c0c276a7Ssdargavi   Level: advanced
3537*c0c276a7Ssdargavi 
3538*c0c276a7Ssdargavi   Notes:
3539*c0c276a7Ssdargavi   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
3540*c0c276a7Ssdargavi 
3541*c0c276a7Ssdargavi   `A` and `B` become part of output mat. The user cannot use `A` and `B` anymore.
3542*c0c276a7Ssdargavi 
3543*c0c276a7Ssdargavi .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3544*c0c276a7Ssdargavi */
3545*c0c276a7Ssdargavi PETSC_INTERN PetscErrorCode MatSetMPIAIJWithSplitSeqAIJ(Mat mat, Mat A, Mat B, PetscInt *garray)
3546*c0c276a7Ssdargavi {
3547*c0c276a7Ssdargavi   PetscFunctionBegin;
3548*c0c276a7Ssdargavi   Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data;
3549*c0c276a7Ssdargavi   PetscInt    m, n, M, N, Am, An, Bm, Bn;
3550*c0c276a7Ssdargavi 
3551*c0c276a7Ssdargavi   PetscCall(MatGetSize(mat, &M, &N));
3552*c0c276a7Ssdargavi   PetscCall(MatGetLocalSize(mat, &m, &n));
3553*c0c276a7Ssdargavi   PetscCall(MatGetLocalSize(A, &Am, &An));
3554*c0c276a7Ssdargavi   PetscCall(MatGetLocalSize(B, &Bm, &Bn));
3555*c0c276a7Ssdargavi 
3556*c0c276a7Ssdargavi   PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match");
3557*c0c276a7Ssdargavi   PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match");
3558*c0c276a7Ssdargavi   PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty");
3559*c0c276a7Ssdargavi   mpiaij->A      = A;
3560*c0c276a7Ssdargavi   mpiaij->B      = B;
3561*c0c276a7Ssdargavi   mpiaij->garray = garray;
3562*c0c276a7Ssdargavi 
3563*c0c276a7Ssdargavi   mat->preallocated     = PETSC_TRUE;
3564*c0c276a7Ssdargavi   mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3565*c0c276a7Ssdargavi 
3566*c0c276a7Ssdargavi   PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3567*c0c276a7Ssdargavi   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
3568*c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3569*c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3570*c0c276a7Ssdargavi    */
3571*c0c276a7Ssdargavi   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
3572*c0c276a7Ssdargavi   PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3573*c0c276a7Ssdargavi   PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3575feb78a15SHong Zhang }
3576feb78a15SHong Zhang 
3577ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35784aa3045dSJed Brown 
3579d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3580d71ae5a4SJacob Faibussowitsch {
358198b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
358285f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
358398b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35841fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
358598b658c4SHong Zhang   MatScalar      *aa;
358600e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3587a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
358898b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
358998b658c4SHong Zhang   IS              iscol_sub, iscmap;
359098b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
359118e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3592a31a438cSHong Zhang   MPI_Comm        comm;
35937e2c5f70SBarry Smith 
3594a0ff6018SBarry Smith   PetscFunctionBegin;
35959566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3596d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35979566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
359828b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35999566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3600d5761cdaSHong Zhang 
36019566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
360228b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3603d5761cdaSHong Zhang 
36049566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
360528b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3606d5761cdaSHong Zhang 
36079566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3608d5761cdaSHong Zhang 
3609d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
36103b00a383SHong Zhang     PetscBool flg;
36113b00a383SHong Zhang 
36129566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
36139566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3614bcae8d28SHong Zhang 
36153b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3616366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
36179566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3618366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3619462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3620366a327dSHong Zhang     if (allcolumns) {
3621366a327dSHong Zhang       iscol_sub = iscol_local;
36229566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
36239566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3624366a327dSHong Zhang 
36253b00a383SHong Zhang     } else {
36261358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3627244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
36289566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
36299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
36309566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36318d2139bdSHong Zhang       count = 0;
3632a31a438cSHong Zhang       k     = 0;
3633a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3634a31a438cSHong Zhang         j = is_idx[i];
3635a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3636a31a438cSHong Zhang           /* diagonal part of mat */
36378d2139bdSHong Zhang           idx[count]     = j;
3638366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36394a3daf6eSHong Zhang         } else if (Bn) {
3640a31a438cSHong Zhang           /* off-diagonal part of mat */
3641a31a438cSHong Zhang           if (j == garray[k]) {
36428d2139bdSHong Zhang             idx[count]     = j;
3643a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3644a31a438cSHong Zhang           } else if (j > garray[k]) {
3645a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3646a31a438cSHong Zhang             if (j == garray[k]) {
3647a31a438cSHong Zhang               idx[count]     = j;
3648a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36498d2139bdSHong Zhang             }
36508d2139bdSHong Zhang           }
36518d2139bdSHong Zhang         }
36528d2139bdSHong Zhang       }
36539566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36548d2139bdSHong Zhang 
36559566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36569566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36579566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3658b6d9b4e0SHong Zhang 
36599566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3660a31a438cSHong Zhang     }
36618b3fa1f7SHong Zhang 
36623b00a383SHong Zhang     /* (3) Create sequential Msub */
36639566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3664d5761cdaSHong Zhang   }
36658d2139bdSHong Zhang 
36669566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
366757508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
366898b658c4SHong Zhang   ii  = aij->i;
36699566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3670a0ff6018SBarry Smith 
3671a0ff6018SBarry Smith   /*
3672a0ff6018SBarry Smith       m - number of local rows
3673a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3674a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3675a0ff6018SBarry Smith   */
36769566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
367798b658c4SHong Zhang 
36783b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36793b00a383SHong Zhang     /* (4) Create parallel newmat */
368098b658c4SHong Zhang     PetscMPIInt rank, size;
3681bcae8d28SHong Zhang     PetscInt    csize;
368298b658c4SHong Zhang 
36839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
368500e6dbe6SBarry Smith 
3686a0ff6018SBarry Smith     /*
368700e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
368800e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3689a0ff6018SBarry Smith     */
369000e6dbe6SBarry Smith 
369100e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36929566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36936a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36949566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3695a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3696e2c4fddaSBarry Smith         nlocal = m;
36976a6a5d1dSBarry Smith       } else {
3698a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3699ab50ec6bSBarry Smith       }
3700ab50ec6bSBarry Smith     } else {
37016a6a5d1dSBarry Smith       nlocal = csize;
37026a6a5d1dSBarry Smith     }
37039566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
370400e6dbe6SBarry Smith     rstart = rend - nlocal;
3705aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
370600e6dbe6SBarry Smith 
370700e6dbe6SBarry Smith     /* next, compute all the lengths */
370898b658c4SHong Zhang     jj = aij->j;
37099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
371000e6dbe6SBarry Smith     olens = dlens + m;
371100e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
371200e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
371300e6dbe6SBarry Smith       olen = 0;
371400e6dbe6SBarry Smith       dlen = 0;
371500e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
371615b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
371700e6dbe6SBarry Smith         else dlen++;
371800e6dbe6SBarry Smith         jj++;
371900e6dbe6SBarry Smith       }
372000e6dbe6SBarry Smith       olens[i] = olen;
372100e6dbe6SBarry Smith       dlens[i] = dlen;
372200e6dbe6SBarry Smith     }
3723b6d9b4e0SHong Zhang 
37249566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
37259566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
372698b658c4SHong Zhang 
37279566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
37289566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
37299566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
37309566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37319566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37329566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3733d5761cdaSHong Zhang 
3734d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3735a0ff6018SBarry Smith     M = *newmat;
37369566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
373708401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37389566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3739c48de900SBarry Smith     /*
3740c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3741c48de900SBarry Smith        rather than the slower MatSetValues().
3742c48de900SBarry Smith     */
3743c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3744c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3745a0ff6018SBarry Smith   }
3746548ecf4dSHong Zhang 
37473b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37499566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
375098b658c4SHong Zhang 
375198b658c4SHong Zhang   jj = aij->j;
37529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3753a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3754a0ff6018SBarry Smith     row = rstart + i;
375500e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
375615b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37579566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37589371c9d4SSatish Balay     jj += nz;
37599371c9d4SSatish Balay     aa += nz;
3760a0ff6018SBarry Smith   }
37619566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3763a0ff6018SBarry Smith 
37649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3766fee21e36SBarry Smith 
37679566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
376898b658c4SHong Zhang 
376998b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3770fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37713b00a383SHong Zhang     *newmat = M;
3772f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37739566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
377498b658c4SHong Zhang 
3775f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37769566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
377798b658c4SHong Zhang 
3778f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37799566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3780bcae8d28SHong Zhang 
3781bcae8d28SHong Zhang     if (iscol_local) {
3782f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37839566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3784bcae8d28SHong Zhang     }
378598b658c4SHong Zhang   }
37863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3787a0ff6018SBarry Smith }
3788273d9f13SBarry Smith 
3789df40acb1SHong Zhang /*
3790df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3791df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3792df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3793df40acb1SHong Zhang 
379411a5261eSBarry Smith   This requires a sequential iscol with all indices.
3795df40acb1SHong Zhang */
3796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3797d71ae5a4SJacob Faibussowitsch {
3798df40acb1SHong Zhang   PetscMPIInt rank, size;
3799df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3800df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3801df40acb1SHong Zhang   Mat         M, Mreuse;
380298b658c4SHong Zhang   MatScalar  *aa, *vwork;
3803df40acb1SHong Zhang   MPI_Comm    comm;
3804df40acb1SHong Zhang   Mat_SeqAIJ *aij;
38050b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3806df40acb1SHong Zhang 
3807df40acb1SHong Zhang   PetscFunctionBegin;
38089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
38099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
38109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3811df40acb1SHong Zhang 
38120b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
38139566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
38149566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
38150b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3816462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
38170b27a90eSHong Zhang 
3818df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
38199566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
382028b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
38219566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3822df40acb1SHong Zhang   } else {
38239566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3824df40acb1SHong Zhang   }
3825df40acb1SHong Zhang 
3826df40acb1SHong Zhang   /*
3827df40acb1SHong Zhang       m - number of local rows
3828df40acb1SHong Zhang       n - number of columns (same on all processors)
3829df40acb1SHong Zhang       rstart - first row in new global matrix generated
3830df40acb1SHong Zhang   */
38319566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38329566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3833df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
383457508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3835df40acb1SHong Zhang     ii  = aij->i;
3836df40acb1SHong Zhang     jj  = aij->j;
3837df40acb1SHong Zhang 
3838df40acb1SHong Zhang     /*
3839df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3840df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3841df40acb1SHong Zhang     */
3842df40acb1SHong Zhang 
3843df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3844df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38459566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3846df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3847df40acb1SHong Zhang         nlocal = m;
3848df40acb1SHong Zhang       } else {
3849df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3850df40acb1SHong Zhang       }
3851df40acb1SHong Zhang     } else {
3852df40acb1SHong Zhang       nlocal = csize;
3853df40acb1SHong Zhang     }
38549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3855df40acb1SHong Zhang     rstart = rend - nlocal;
3856aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3857df40acb1SHong Zhang 
3858df40acb1SHong Zhang     /* next, compute all the lengths */
38599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3860df40acb1SHong Zhang     olens = dlens + m;
3861df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3862df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3863df40acb1SHong Zhang       olen = 0;
3864df40acb1SHong Zhang       dlen = 0;
3865df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3866df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3867df40acb1SHong Zhang         else dlen++;
3868df40acb1SHong Zhang         jj++;
3869df40acb1SHong Zhang       }
3870df40acb1SHong Zhang       olens[i] = olen;
3871df40acb1SHong Zhang       dlens[i] = dlen;
3872df40acb1SHong Zhang     }
38739566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38749566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38769566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38779566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38789566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3879df40acb1SHong Zhang   } else {
3880df40acb1SHong Zhang     PetscInt ml, nl;
3881df40acb1SHong Zhang 
3882df40acb1SHong Zhang     M = *newmat;
38839566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
388408401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38859566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3886df40acb1SHong Zhang     /*
3887df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3888df40acb1SHong Zhang        rather than the slower MatSetValues().
3889df40acb1SHong Zhang     */
3890df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3891df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3892df40acb1SHong Zhang   }
38939566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
389457508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3895df40acb1SHong Zhang   ii  = aij->i;
3896df40acb1SHong Zhang   jj  = aij->j;
38972e5835c6SStefano Zampini 
38982e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3900df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3901df40acb1SHong Zhang     row   = rstart + i;
3902df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
39039371c9d4SSatish Balay     cwork = jj;
39048e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
39059371c9d4SSatish Balay     vwork = aa;
39068e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
39079566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3908df40acb1SHong Zhang   }
39099566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3910df40acb1SHong Zhang 
39119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
39129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3913df40acb1SHong Zhang   *newmat = M;
3914df40acb1SHong Zhang 
3915df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3916df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
39179566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
39189566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3919df40acb1SHong Zhang   }
39203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3921df40acb1SHong Zhang }
3922df40acb1SHong Zhang 
3923ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3924d71ae5a4SJacob Faibussowitsch {
39256a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
39269f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3927ccd8e176SBarry Smith   const PetscInt *JJ;
3928eeb24464SBarry Smith   PetscBool       nooffprocentries;
39296a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3930ccd8e176SBarry Smith 
3931ccd8e176SBarry Smith   PetscFunctionBegin;
39329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3934d0f46423SBarry Smith   m       = B->rmap->n;
3935d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3936d0f46423SBarry Smith   cend    = B->cmap->rend;
3937d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39389f0612e4SBarry Smith   irstart = Ii[0];
3939899cda47SBarry Smith 
39409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3941ccd8e176SBarry Smith 
394276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39438f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3944ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39459f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
394608401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
394708401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
394808401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3949ecc77c7aSBarry Smith     }
395076bd3646SJed Brown   }
3951ecc77c7aSBarry Smith 
39528f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3953b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39549f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3955ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3956ccd8e176SBarry Smith     d       = 0;
39570daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39580daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3959ccd8e176SBarry Smith     }
3960ccd8e176SBarry Smith     d_nnz[i] = d;
3961ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3962ccd8e176SBarry Smith   }
39639566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39649566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3965ccd8e176SBarry Smith 
39668f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3967ccd8e176SBarry Smith     ii = i + rstart;
39689f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3969ccd8e176SBarry Smith   }
3970eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3971eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3974eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3975ccd8e176SBarry Smith 
39766a3d2595SBarry Smith   /* count number of entries below block diagonal */
39776a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39786a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39796a3d2595SBarry Smith   Aij->ld = ld;
39806a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39816a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39826a3d2595SBarry Smith     j   = 0;
3983ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39846a3d2595SBarry Smith     ld[i] = j;
3985720a2405SPierre Jolivet     if (J) J += nnz;
39866a3d2595SBarry Smith   }
39876a3d2595SBarry Smith 
39889566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3990ccd8e176SBarry Smith }
3991ccd8e176SBarry Smith 
39921eea217eSSatish Balay /*@
399311a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3994ccd8e176SBarry Smith   (the default parallel PETSc format).
3995ccd8e176SBarry Smith 
3996d083f849SBarry Smith   Collective
3997ccd8e176SBarry Smith 
3998ccd8e176SBarry Smith   Input Parameters:
3999a1661176SMatthew Knepley + B - the matrix
4000d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
4001d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
4002ccd8e176SBarry Smith - v - optional values in the matrix
4003ccd8e176SBarry Smith 
4004ccd8e176SBarry Smith   Level: developer
4005ccd8e176SBarry Smith 
400612251496SSatish Balay   Notes:
40072ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
40082ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
400911a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
401012251496SSatish Balay 
40112ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
401212251496SSatish Balay 
4013a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
4014a4bd8bc0SBarry Smith 
4015a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
4016a4bd8bc0SBarry Smith 
4017a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
4018a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4019a4bd8bc0SBarry Smith 
402012251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
402112251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4022c5e4d11fSDmitry Karpeev   as shown
402327430b45SBarry Smith .vb
402427430b45SBarry Smith         1 0 0
402527430b45SBarry Smith         2 0 3     P0
402627430b45SBarry Smith        -------
402727430b45SBarry Smith         4 5 6     P1
402827430b45SBarry Smith 
402927430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
403027430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
403127430b45SBarry Smith         j =  {0,0,2}  [size = 3]
403227430b45SBarry Smith         v =  {1,2,3}  [size = 3]
403327430b45SBarry Smith 
403427430b45SBarry Smith      Process1 [P1] rows_owned=[2]
403527430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
403627430b45SBarry Smith         j =  {0,1,2}  [size = 3]
403727430b45SBarry Smith         v =  {4,5,6}  [size = 3]
403827430b45SBarry Smith .ve
403912251496SSatish Balay 
4040fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4041a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4042ccd8e176SBarry Smith @*/
4043d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4044d71ae5a4SJacob Faibussowitsch {
4045ccd8e176SBarry Smith   PetscFunctionBegin;
4046cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4048ccd8e176SBarry Smith }
4049ccd8e176SBarry Smith 
40505d83a8b1SBarry Smith /*@
405111a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4052273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4053273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
405420f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4055273d9f13SBarry Smith 
4056d083f849SBarry Smith   Collective
4057273d9f13SBarry Smith 
4058273d9f13SBarry Smith   Input Parameters:
40591c4f3114SJed Brown + B     - the matrix
4060273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4061273d9f13SBarry Smith            (same value is used for all local rows)
4062273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4063273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40642ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4065273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40663287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40673287b5eaSJed Brown            the diagonal entry even if it is zero.
4068273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4069273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4070273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4071273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40722ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4073273d9f13SBarry Smith            structure. The size of this array is equal to the number
4074273d9f13SBarry Smith            of local rows, i.e 'm'.
4075273d9f13SBarry Smith 
40762920cce0SJacob Faibussowitsch   Example Usage:
407727430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
407827430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
407927430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
408027430b45SBarry Smith   as follows
408127430b45SBarry Smith 
408227430b45SBarry Smith .vb
408327430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
408427430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
408527430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
408627430b45SBarry Smith     -------------------------------------
408727430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
408827430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
408927430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
409027430b45SBarry Smith     -------------------------------------
409127430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
409227430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
409327430b45SBarry Smith .ve
409427430b45SBarry Smith 
409527430b45SBarry Smith   This can be represented as a collection of submatrices as
409627430b45SBarry Smith .vb
409727430b45SBarry Smith       A B C
409827430b45SBarry Smith       D E F
409927430b45SBarry Smith       G H I
410027430b45SBarry Smith .ve
410127430b45SBarry Smith 
410227430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
410327430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
410427430b45SBarry Smith 
410527430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
410627430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
410727430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
410827430b45SBarry Smith 
410927430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
411027430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
411127430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
411227430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
411327430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
41145163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
411527430b45SBarry Smith 
411620f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
41175163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
41185163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
41195163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
41205163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
412120f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
412227430b45SBarry Smith .vb
412327430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
412427430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
412527430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
412627430b45SBarry Smith .ve
412720f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
412827430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
412927430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
413027430b45SBarry Smith   34 values.
413127430b45SBarry Smith 
413220f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
413327430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
413420f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
413527430b45SBarry Smith .vb
413627430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
413727430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
413827430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
413927430b45SBarry Smith .ve
414027430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
414127430b45SBarry Smith   hence pre-allocation is perfect.
414227430b45SBarry Smith 
414327430b45SBarry Smith   Level: intermediate
414427430b45SBarry Smith 
414527430b45SBarry Smith   Notes:
414649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
414749a6f317SBarry Smith 
414827430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41490598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4150651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4151273d9f13SBarry Smith 
4152273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4153273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4154273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4155273d9f13SBarry Smith 
4156273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4157a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4158a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4159a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4160a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4161a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4162a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4163a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4164a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4165273d9f13SBarry Smith 
41662ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4167273d9f13SBarry Smith 
416827430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4169aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
417027430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4171aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4172aa95bbe8SBarry Smith 
41731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4174a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4175273d9f13SBarry Smith @*/
4176d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4177d71ae5a4SJacob Faibussowitsch {
4178273d9f13SBarry Smith   PetscFunctionBegin;
41796ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41806ba663aaSJed Brown   PetscValidType(B, 1);
4181cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4183273d9f13SBarry Smith }
4184273d9f13SBarry Smith 
418558d36128SBarry Smith /*@
418611a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41878f8f2f0dSBarry Smith   CSR format for the local rows.
41882fb0ec9aSBarry Smith 
4189d083f849SBarry Smith   Collective
41902fb0ec9aSBarry Smith 
41912fb0ec9aSBarry Smith   Input Parameters:
41922fb0ec9aSBarry Smith + comm - MPI communicator
419311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41942fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4195d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4196d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4197d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4198d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41995693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
42005693b835SJunchao Zhang . j    - global column indices
4201f1f2ae84SBarry Smith - a    - optional matrix values
42022fb0ec9aSBarry Smith 
42032fb0ec9aSBarry Smith   Output Parameter:
42042fb0ec9aSBarry Smith . mat - the matrix
420503bfb495SBarry Smith 
42062fb0ec9aSBarry Smith   Level: intermediate
42072fb0ec9aSBarry Smith 
42082fb0ec9aSBarry Smith   Notes:
42092ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4210d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4211d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
42122fb0ec9aSBarry Smith 
42132ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
421412251496SSatish Balay 
42155693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4216a4bd8bc0SBarry Smith 
42175693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4218a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4219a4bd8bc0SBarry Smith 
422012251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4221d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4222c5e4d11fSDmitry Karpeev   as shown
42232ef1f0ffSBarry Smith .vb
42242ef1f0ffSBarry Smith         1 0 0
42252ef1f0ffSBarry Smith         2 0 3     P0
42262ef1f0ffSBarry Smith        -------
42272ef1f0ffSBarry Smith         4 5 6     P1
42288f8f2f0dSBarry Smith 
42292ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42302ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42312ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42322ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42332fb0ec9aSBarry Smith 
42342ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42352ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42362ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42372ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42382ef1f0ffSBarry Smith .ve
42392ef1f0ffSBarry Smith 
4240d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42415693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42422fb0ec9aSBarry Smith @*/
4243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4244d71ae5a4SJacob Faibussowitsch {
42452fb0ec9aSBarry Smith   PetscFunctionBegin;
424608401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
424708401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42489566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42499566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42509566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42519566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42529566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42542fb0ec9aSBarry Smith }
42552fb0ec9aSBarry Smith 
42568f8f2f0dSBarry Smith /*@
425711a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42582ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42592ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42606a3d2595SBarry Smith 
42616a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42628f8f2f0dSBarry Smith 
42638f8f2f0dSBarry Smith   Collective
42648f8f2f0dSBarry Smith 
42658f8f2f0dSBarry Smith   Input Parameters:
42668f8f2f0dSBarry Smith + mat - the matrix
426711a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42688f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
426911a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42708f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
427111a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
427211a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42738f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42748f8f2f0dSBarry Smith . J   - column indices
42758f8f2f0dSBarry Smith - v   - matrix values
42768f8f2f0dSBarry Smith 
42772ef1f0ffSBarry Smith   Level: deprecated
42788f8f2f0dSBarry Smith 
42791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4280a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42818f8f2f0dSBarry Smith @*/
4282d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4283d71ae5a4SJacob Faibussowitsch {
42846a3d2595SBarry Smith   PetscInt        nnz, i;
42858f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42868f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4287fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4288fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42898f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42906a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42916a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42928f8f2f0dSBarry Smith 
42938f8f2f0dSBarry Smith   PetscFunctionBegin;
4294aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
429508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
429608401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
429708401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42988f8f2f0dSBarry Smith 
42999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43009566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43018f8f2f0dSBarry Smith 
43028f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
43034c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
43044c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
43054c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
43064c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
43074c17f1ccSBarry Smith       }
43084c17f1ccSBarry Smith     }
43098f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
43108f8f2f0dSBarry Smith     Iii = Ii[i];
43118f8f2f0dSBarry Smith     ldi = ld[i];
43128f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
43139566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
43149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43159566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43168f8f2f0dSBarry Smith     ad += md;
43178f8f2f0dSBarry Smith     ao += nnz - md;
43188f8f2f0dSBarry Smith   }
43198f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
43208f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43239566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43249566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43259566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43288f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
43293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43308f8f2f0dSBarry Smith }
43318f8f2f0dSBarry Smith 
43326a3d2595SBarry Smith /*@
433311a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43346a3d2595SBarry Smith 
43356a3d2595SBarry Smith   Collective
43366a3d2595SBarry Smith 
43376a3d2595SBarry Smith   Input Parameters:
43386a3d2595SBarry Smith + mat - the matrix
43396a3d2595SBarry Smith - v   - matrix values, stored by row
43406a3d2595SBarry Smith 
43416a3d2595SBarry Smith   Level: intermediate
43426a3d2595SBarry Smith 
4343a4bd8bc0SBarry Smith   Notes:
43446a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43456a3d2595SBarry Smith 
4346a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4347a4bd8bc0SBarry Smith 
43481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4349a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43506a3d2595SBarry Smith @*/
4351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4352d71ae5a4SJacob Faibussowitsch {
43536a3d2595SBarry Smith   PetscInt        nnz, i, m;
43546a3d2595SBarry Smith   PetscBool       nooffprocentries;
43556a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43566a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43576a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43586a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43596a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43606a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43616a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43626a3d2595SBarry Smith 
43636a3d2595SBarry Smith   PetscFunctionBegin;
43646a3d2595SBarry Smith   m = mat->rmap->n;
43656a3d2595SBarry Smith 
43666a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43676a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43686a3d2595SBarry Smith   Iii = 0;
43696a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43706a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43716a3d2595SBarry Smith     ldi = ld[i];
43726a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43736a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43746a3d2595SBarry Smith     ad += md;
4375810441c8SPierre Jolivet     if (ao) {
4376810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4377810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43786a3d2595SBarry Smith       ao += nnz - md;
4379810441c8SPierre Jolivet     }
43806a3d2595SBarry Smith     Iii += nnz;
43816a3d2595SBarry Smith   }
43826a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43836a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43846a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43856a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43866a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43876a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43886a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43896a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43906a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43916a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43936a3d2595SBarry Smith }
43946a3d2595SBarry Smith 
43955d83a8b1SBarry Smith /*@
439611a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4397273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4398273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43992ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4400273d9f13SBarry Smith 
4401d083f849SBarry Smith   Collective
4402273d9f13SBarry Smith 
4403273d9f13SBarry Smith   Input Parameters:
4404273d9f13SBarry Smith + comm  - MPI communicator
440511a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4406273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4407273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4408273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
440945f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4410273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
441111a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
441211a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4413273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4414273d9f13SBarry Smith           (same value is used for all local rows)
4415273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4416273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
44172ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4418273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4419273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4420273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4421273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4422273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
44232ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4424273d9f13SBarry Smith           structure. The size of this array is equal to the number
4425273d9f13SBarry Smith           of local rows, i.e 'm'.
4426273d9f13SBarry Smith 
4427273d9f13SBarry Smith   Output Parameter:
4428273d9f13SBarry Smith . A - the matrix
4429273d9f13SBarry Smith 
443027430b45SBarry Smith   Options Database Keys:
443127430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
443227430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
443327430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4434727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4435727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
443627430b45SBarry Smith 
44372ef1f0ffSBarry Smith   Level: intermediate
44382ef1f0ffSBarry Smith 
443927430b45SBarry Smith   Notes:
444077433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4441f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
444211a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4443175b88e8SBarry Smith 
444449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
444549a6f317SBarry Smith 
44462ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44472ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4448273d9f13SBarry Smith   storage requirements for this matrix.
4449273d9f13SBarry Smith 
445011a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4451273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4452273d9f13SBarry Smith   that argument.
4453273d9f13SBarry Smith 
4454727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4455727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4456727bdf9bSBarry Smith 
4457273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4458273d9f13SBarry Smith   (possibly both).
4459273d9f13SBarry Smith 
446033a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4461727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4462727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4463727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
446433a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4465273d9f13SBarry Smith 
446633a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
446733a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4468df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
446933a7c187SSatish Balay 
447033a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
447133a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
447233a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
447333a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
447433a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
447533a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44760b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44770b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
447833a7c187SSatish Balay 
447933a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
448033a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
448133a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
448233a7c187SSatish Balay   local matrix (a rectangular submatrix).
4483273d9f13SBarry Smith 
44842ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4485273d9f13SBarry Smith 
448697d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44872ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4488da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4489da57b5cdSKarl Rupp .vb
44902ef1f0ffSBarry Smith   MatCreate(..., &A);
44912ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44922ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44932ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4494da57b5cdSKarl Rupp .ve
449597d05335SKris Buschelman 
4496273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4497273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4498273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4499273d9f13SBarry Smith 
45002920cce0SJacob Faibussowitsch   Example Usage:
4501273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4502273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4503273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4504efc377ccSKarl Rupp   as follows
4505273d9f13SBarry Smith 
4506273d9f13SBarry Smith .vb
4507273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4508273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4509273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4510273d9f13SBarry Smith     -------------------------------------
4511273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4512273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4513273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4514273d9f13SBarry Smith     -------------------------------------
4515273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4516273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4517273d9f13SBarry Smith .ve
4518273d9f13SBarry Smith 
4519da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4520273d9f13SBarry Smith 
4521273d9f13SBarry Smith .vb
4522273d9f13SBarry Smith       A B C
4523273d9f13SBarry Smith       D E F
4524273d9f13SBarry Smith       G H I
4525273d9f13SBarry Smith .ve
4526273d9f13SBarry Smith 
4527273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4528273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4529273d9f13SBarry Smith 
4530273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4531273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4532273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4533273d9f13SBarry Smith 
4534273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4535273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4536273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4537273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
453827430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45395163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4540273d9f13SBarry Smith 
45412ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45425163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45435163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45445163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45455163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45462ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4547273d9f13SBarry Smith .vb
454827430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
454927430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
455027430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4551273d9f13SBarry Smith .ve
45522ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4553273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4554273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4555273d9f13SBarry Smith   34 values.
4556273d9f13SBarry Smith 
45572ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4558a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4559da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4560273d9f13SBarry Smith .vb
456127430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
456227430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
456327430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4564273d9f13SBarry Smith .ve
4565273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4566273d9f13SBarry Smith   hence pre-allocation is perfect.
4567273d9f13SBarry Smith 
45681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4569727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4570727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4571273d9f13SBarry Smith @*/
4572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4573d71ae5a4SJacob Faibussowitsch {
4574b1d57f15SBarry Smith   PetscMPIInt size;
4575273d9f13SBarry Smith 
4576273d9f13SBarry Smith   PetscFunctionBegin;
45779566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4580273d9f13SBarry Smith   if (size > 1) {
45819566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45829566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4583273d9f13SBarry Smith   } else {
45849566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45859566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4586273d9f13SBarry Smith   }
45873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4588273d9f13SBarry Smith }
4589195d93cdSBarry Smith 
45900b98dbb4SBarry Smith /*MC
45910b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45920b98dbb4SBarry Smith 
45930b98dbb4SBarry Smith     Synopsis:
45940b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45950b98dbb4SBarry Smith 
45960b98dbb4SBarry Smith     Not Collective
45970b98dbb4SBarry Smith 
45980b98dbb4SBarry Smith     Input Parameter:
45990b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
46000b98dbb4SBarry Smith 
46010b98dbb4SBarry Smith     Output Parameters:
46020b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
46034cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
46042ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
46050b98dbb4SBarry Smith -   ierr - error code
46060b98dbb4SBarry Smith 
46070b98dbb4SBarry Smith      Level: advanced
46080b98dbb4SBarry Smith 
46090b98dbb4SBarry Smith     Note:
46100b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
46110b98dbb4SBarry Smith 
46121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
46130b98dbb4SBarry Smith M*/
46140b98dbb4SBarry Smith 
46150b98dbb4SBarry Smith /*MC
46160b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
46170b98dbb4SBarry Smith 
46180b98dbb4SBarry Smith     Synopsis:
46190b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
46200b98dbb4SBarry Smith 
46210b98dbb4SBarry Smith     Not Collective
46220b98dbb4SBarry Smith 
46230b98dbb4SBarry Smith     Input Parameters:
46240b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
46250b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
46264cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
46272ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
46280b98dbb4SBarry Smith -   ierr - error code
46290b98dbb4SBarry Smith 
46300b98dbb4SBarry Smith      Level: advanced
46310b98dbb4SBarry Smith 
46321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
46330b98dbb4SBarry Smith M*/
46340b98dbb4SBarry Smith 
4635127ca0efSMatthew Knepley /*@C
46360ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4637127ca0efSMatthew Knepley 
46382ef1f0ffSBarry Smith   Not Collective
4639127ca0efSMatthew Knepley 
4640127ca0efSMatthew Knepley   Input Parameter:
464111a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4642127ca0efSMatthew Knepley 
4643127ca0efSMatthew Knepley   Output Parameters:
464411a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
464511a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46462ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4647127ca0efSMatthew Knepley 
46480ab4885dSBarry Smith   Level: intermediate
46490ab4885dSBarry Smith 
465011a5261eSBarry Smith   Note:
46512ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46522ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46532ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4654127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4655127ca0efSMatthew Knepley 
4656fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46570ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4658127ca0efSMatthew Knepley 
4659fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4660127ca0efSMatthew Knepley @*/
4661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4662d71ae5a4SJacob Faibussowitsch {
4663195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
466404cf37c7SBarry Smith   PetscBool   flg;
4665b1d57f15SBarry Smith 
4666195d93cdSBarry Smith   PetscFunctionBegin;
46679566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
466828b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
466921e72a00SBarry Smith   if (Ad) *Ad = a->A;
467021e72a00SBarry Smith   if (Ao) *Ao = a->B;
467121e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4673195d93cdSBarry Smith }
4674a2243be0SBarry Smith 
4675d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4676d71ae5a4SJacob Faibussowitsch {
4677110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46789b8102ccSHong Zhang   PetscInt    *indx;
4679110bb6e1SHong Zhang   PetscScalar *values;
4680421ddf4dSJunchao Zhang   MatType      rootType;
46819b8102ccSHong Zhang 
46829b8102ccSHong Zhang   PetscFunctionBegin;
46839566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4684110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4685110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4686110bb6e1SHong Zhang 
468748a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4688a22543b6SHong Zhang     /* Check sum(n) = N */
4689462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
469008401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4691a22543b6SHong Zhang 
46929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46939b8102ccSHong Zhang     rstart -= m;
46949b8102ccSHong Zhang 
4695d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46969b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46979566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46989566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46999566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
47009b8102ccSHong Zhang     }
47019b8102ccSHong Zhang 
47029566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
47039566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
47049566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
47059566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
47069566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
47079566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
47089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
47099566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4710d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
47119566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
47129b8102ccSHong Zhang   }
47139b8102ccSHong Zhang 
4714110bb6e1SHong Zhang   /* numeric phase */
47159566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
47169b8102ccSHong Zhang   for (i = 0; i < m; i++) {
47179566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
47189b8102ccSHong Zhang     Ii = i + rstart;
47199566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
47209566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
47219b8102ccSHong Zhang   }
47229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
47239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
47243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4725c5d6d63eSBarry Smith }
4726c5d6d63eSBarry Smith 
472749abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4728d71ae5a4SJacob Faibussowitsch {
472949abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
473051a7d1a8SHong Zhang 
473151a7d1a8SHong Zhang   PetscFunctionBegin;
47323ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
47339566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
47349566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47359566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47369566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47379566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47389566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47399566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47409566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47419566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47429566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47439566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47449566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47459566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47469566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
474851a7d1a8SHong Zhang }
474951a7d1a8SHong Zhang 
4750c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4751c6db04a5SJed Brown #include <petscbt.h>
47524ebed01fSBarry Smith 
4753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4754d71ae5a4SJacob Faibussowitsch {
4755ce94432eSBarry Smith   MPI_Comm             comm;
475655d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4757b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
47586497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
47596497c311SBarry Smith   PetscMPIInt          proc, k;
4760b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
47616497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4762b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
476355d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
476455d1abb9SHong Zhang   MPI_Status          *status;
4765fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4766dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
476755d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4768776b82aeSLisandro Dalcin   PetscContainer       container;
476955d1abb9SHong Zhang 
477055d1abb9SHong Zhang   PetscFunctionBegin;
47719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47733c2c1871SHong Zhang 
47749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
477655d1abb9SHong Zhang 
47779566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
477828b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47799566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4781fff043a9SJunchao Zhang   aa = a_a;
4782bf0cc555SLisandro Dalcin 
478355d1abb9SHong Zhang   bi     = merge->bi;
478455d1abb9SHong Zhang   bj     = merge->bj;
478555d1abb9SHong Zhang   buf_ri = merge->buf_ri;
478655d1abb9SHong Zhang   buf_rj = merge->buf_rj;
478755d1abb9SHong Zhang 
47889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47897a2fc3feSBarry Smith   owners = merge->rowmap->range;
479055d1abb9SHong Zhang   len_s  = merge->len_s;
479155d1abb9SHong Zhang 
479255d1abb9SHong Zhang   /* send and recv matrix values */
47939566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47949566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
479555d1abb9SHong Zhang 
47969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
479755d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
479855d1abb9SHong Zhang     if (!len_s[proc]) continue;
479955d1abb9SHong Zhang     i = owners[proc];
48006497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
480155d1abb9SHong Zhang     k++;
480255d1abb9SHong Zhang   }
480355d1abb9SHong Zhang 
48049566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
48059566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
48069566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
480755d1abb9SHong Zhang 
48089566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
48099566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
481055d1abb9SHong Zhang 
481155d1abb9SHong Zhang   /* insert mat values of mpimat */
48129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
48139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
481455d1abb9SHong Zhang 
481555d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
481655d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4817f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
481855d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4819a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
482055d1abb9SHong Zhang   }
482155d1abb9SHong Zhang 
482255d1abb9SHong Zhang   /* set values of ba */
48237a2fc3feSBarry Smith   m = merge->rowmap->n;
482455d1abb9SHong Zhang   for (i = 0; i < m; i++) {
482555d1abb9SHong Zhang     arow = owners[rank] + i;
482655d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
482755d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
48289566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
482955d1abb9SHong Zhang 
483055d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
483155d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
483255d1abb9SHong Zhang     aj     = a->j + ai[arow];
4833fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
483455d1abb9SHong Zhang     nextaj = 0;
483555d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
483655d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
483755d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
483855d1abb9SHong Zhang       }
483955d1abb9SHong Zhang     }
484055d1abb9SHong Zhang 
484155d1abb9SHong Zhang     /* add received vals into ba */
484255d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
484355d1abb9SHong Zhang       /* i-th row */
484455d1abb9SHong Zhang       if (i == *nextrow[k]) {
484555d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4846f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4847f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
484855d1abb9SHong Zhang         nextaj = 0;
484955d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
485055d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
485155d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
485255d1abb9SHong Zhang           }
485355d1abb9SHong Zhang         }
48549371c9d4SSatish Balay         nextrow[k]++;
48559371c9d4SSatish Balay         nextai[k]++;
485655d1abb9SHong Zhang       }
485755d1abb9SHong Zhang     }
48589566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
485955d1abb9SHong Zhang   }
48609566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
486355d1abb9SHong Zhang 
48649566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48659566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48669566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48679566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
487055d1abb9SHong Zhang }
487138f152feSBarry Smith 
4872d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4873d71ae5a4SJacob Faibussowitsch {
487455a3bba9SHong Zhang   Mat                  B_mpi;
4875c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4876b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4877b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4878d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
48796497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4880c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4881b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
488255d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
488358cb9c82SHong Zhang   MPI_Status          *status;
48840298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4885be0fcf8dSHong Zhang   PetscBT              lnkbt;
488651a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4887776b82aeSLisandro Dalcin   PetscContainer       container;
488802c68681SHong Zhang 
4889e5f2cdd8SHong Zhang   PetscFunctionBegin;
48909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48913c2c1871SHong Zhang 
489238f152feSBarry Smith   /* make sure it is a PETSc comm */
48939566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
489655d1abb9SHong Zhang 
48979566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4899e5f2cdd8SHong Zhang 
49006abd8857SHong Zhang   /* determine row ownership */
49019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
49029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
49039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
49049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
49059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
49069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
49079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
490855d1abb9SHong Zhang 
49097a2fc3feSBarry Smith   m      = merge->rowmap->n;
49107a2fc3feSBarry Smith   owners = merge->rowmap->range;
49116abd8857SHong Zhang 
49126abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
49133e06a4e6SHong Zhang   len_s = merge->len_s;
491451a7d1a8SHong Zhang 
49152257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4916c2234fe3SHong Zhang   merge->nsend = 0;
49176497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
49182257cef7SHong Zhang     len_si[proc] = 0;
49193e06a4e6SHong Zhang     if (proc == rank) {
49206abd8857SHong Zhang       len_s[proc] = 0;
49213e06a4e6SHong Zhang     } else {
49226497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
49236497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
49243e06a4e6SHong Zhang     }
49253e06a4e6SHong Zhang     if (len_s[proc]) {
4926c2234fe3SHong Zhang       merge->nsend++;
49272257cef7SHong Zhang       nrows = 0;
49282257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
49292257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
49302257cef7SHong Zhang       }
49316497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
49322257cef7SHong Zhang       len += len_si[proc];
4933409913e3SHong Zhang     }
493458cb9c82SHong Zhang   }
4935409913e3SHong Zhang 
49362257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49379566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49389566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4939671beff6SHong Zhang 
49403e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49419566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49429566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
494302c68681SHong Zhang 
49443e06a4e6SHong Zhang   /* post the Isend of j-structure */
49459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49463e06a4e6SHong Zhang 
49476497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4948409913e3SHong Zhang     if (!len_s[proc]) continue;
494902c68681SHong Zhang     i = owners[proc];
49506497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
495151a7d1a8SHong Zhang     k++;
495251a7d1a8SHong Zhang   }
495351a7d1a8SHong Zhang 
49543e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49559566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49569566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
495702c68681SHong Zhang 
495802c68681SHong Zhang   /* send and recv i-structure */
49599566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49609566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
496102c68681SHong Zhang 
49629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49633e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49646497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
496502c68681SHong Zhang     if (!len_s[proc]) continue;
49663e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49673e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49683e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49693e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49703e06a4e6SHong Zhang     */
49712257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49723e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49733e06a4e6SHong Zhang     buf_si[0]   = nrows;
49743e06a4e6SHong Zhang     buf_si_i[0] = 0;
49753e06a4e6SHong Zhang     nrows       = 0;
49763e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49773e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49783e06a4e6SHong Zhang       if (anzi) {
49793e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49803e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49813e06a4e6SHong Zhang         nrows++;
49823e06a4e6SHong Zhang       }
49833e06a4e6SHong Zhang     }
49846497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
498502c68681SHong Zhang     k++;
49862257cef7SHong Zhang     buf_si += len_si[proc];
498702c68681SHong Zhang   }
49882257cef7SHong Zhang 
49899566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49909566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
499102c68681SHong Zhang 
49929566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
499348a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49943e06a4e6SHong Zhang 
49959566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49969566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49979566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49989566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49999566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
50009566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
50019566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
500258cb9c82SHong Zhang 
5003bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
500458cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
50059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
500658cb9c82SHong Zhang   bi[0] = 0;
500758cb9c82SHong Zhang 
5008be0fcf8dSHong Zhang   /* create and initialize a linked list */
5009be0fcf8dSHong Zhang   nlnk = N + 1;
50109566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
501158cb9c82SHong Zhang 
5012bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
5013bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
50149566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
50152205254eSKarl Rupp 
501658cb9c82SHong Zhang   current_space = free_space;
501758cb9c82SHong Zhang 
5018bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
50199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
50201d79065fSBarry Smith 
50213e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
50222257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
50233e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
50243e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
5025a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
50263e06a4e6SHong Zhang   }
50272257cef7SHong Zhang 
5028d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
5029bcc1bcd5SHong Zhang   len = 0;
503058cb9c82SHong Zhang   for (i = 0; i < m; i++) {
503158cb9c82SHong Zhang     bnzi = 0;
503258cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
503358cb9c82SHong Zhang     arow = owners[rank] + i;
503458cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
503558cb9c82SHong Zhang     aj   = a->j + ai[arow];
50369566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
503758cb9c82SHong Zhang     bnzi += nlnk;
503858cb9c82SHong Zhang     /* add received col data into lnk */
503951a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
504055d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50413e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50423e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50439566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50443e06a4e6SHong Zhang         bnzi += nlnk;
50459371c9d4SSatish Balay         nextrow[k]++;
50469371c9d4SSatish Balay         nextai[k]++;
50473e06a4e6SHong Zhang       }
504858cb9c82SHong Zhang     }
5049bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
505058cb9c82SHong Zhang 
505158cb9c82SHong Zhang     /* if free space is not available, make more free space */
505248a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
505358cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50549566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50559566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5056bcc1bcd5SHong Zhang 
505758cb9c82SHong Zhang     current_space->array += bnzi;
505858cb9c82SHong Zhang     current_space->local_used += bnzi;
505958cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
506058cb9c82SHong Zhang 
506158cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
506258cb9c82SHong Zhang   }
5063bcc1bcd5SHong Zhang 
50649566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5065bcc1bcd5SHong Zhang 
50669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50679566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50689566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5069409913e3SHong Zhang 
5070bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50719566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50729566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
507354b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50749566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
507554b84b50SHong Zhang   } else {
50769566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
507754b84b50SHong Zhang   }
50789566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50799566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50809566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5081d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50829566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
508358cb9c82SHong Zhang 
508490431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50856abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5086affca5deSHong Zhang   merge->bi        = bi;
5087affca5deSHong Zhang   merge->bj        = bj;
508802c68681SHong Zhang   merge->buf_ri    = buf_ri;
508902c68681SHong Zhang   merge->buf_rj    = buf_rj;
50900298fd71SBarry Smith   merge->coi       = NULL;
50910298fd71SBarry Smith   merge->coj       = NULL;
50920298fd71SBarry Smith   merge->owners_co = NULL;
5093affca5deSHong Zhang 
50949566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5095bf0cc555SLisandro Dalcin 
5096affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50979566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50989566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
509949abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
51009566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
51019566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5102affca5deSHong Zhang   *mpimat = B_mpi;
510338f152feSBarry Smith 
51049566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
51053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5106e5f2cdd8SHong Zhang }
510725616d81SHong Zhang 
5108cc4c1da9SBarry Smith /*@
510911a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5110d4036a1aSHong Zhang   matrices from each processor
5111d4036a1aSHong Zhang 
5112d083f849SBarry Smith   Collective
5113d4036a1aSHong Zhang 
5114d4036a1aSHong Zhang   Input Parameters:
5115d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5116d4036a1aSHong Zhang . seqmat - the input sequential matrices
511711a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
511811a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
511911a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5120d4036a1aSHong Zhang 
5121d4036a1aSHong Zhang   Output Parameter:
5122d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5123d4036a1aSHong Zhang 
5124d4036a1aSHong Zhang   Level: advanced
5125d4036a1aSHong Zhang 
512611a5261eSBarry Smith   Note:
5127d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5128d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5129b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
51302ef1f0ffSBarry Smith 
51311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5132d4036a1aSHong Zhang @*/
5133d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5134d71ae5a4SJacob Faibussowitsch {
51357e63b356SHong Zhang   PetscMPIInt size;
513655d1abb9SHong Zhang 
513755d1abb9SHong Zhang   PetscFunctionBegin;
51389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51397e63b356SHong Zhang   if (size == 1) {
51409566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51417e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51429566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51437e63b356SHong Zhang     } else {
51449566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51457e63b356SHong Zhang     }
51469566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51473ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51487e63b356SHong Zhang   }
51499566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
515048a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51519566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
515455d1abb9SHong Zhang }
51554ebed01fSBarry Smith 
5156bc08b0f1SBarry Smith /*@
51572920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51588a9c020eSBarry Smith 
51598a9c020eSBarry Smith   Not Collective
51608a9c020eSBarry Smith 
51612fe279fdSBarry Smith   Input Parameter:
516220f4b53cSBarry Smith . A - the matrix
51638a9c020eSBarry Smith 
51648a9c020eSBarry Smith   Output Parameter:
51658a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51668a9c020eSBarry Smith 
51678a9c020eSBarry Smith   Level: developer
51688a9c020eSBarry Smith 
51698a9c020eSBarry Smith   Notes:
51702920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51712920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51722920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51732920cce0SJacob Faibussowitsch 
517411a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51758a9c020eSBarry Smith 
51762920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51772920cce0SJacob Faibussowitsch 
517811a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51798a9c020eSBarry Smith 
51801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51818a9c020eSBarry Smith @*/
5182d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5183d71ae5a4SJacob Faibussowitsch {
51848a9c020eSBarry Smith   PetscBool mpi;
51858a9c020eSBarry Smith 
51868a9c020eSBarry Smith   PetscFunctionBegin;
51878a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51888a9c020eSBarry Smith   if (mpi) {
51898a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51908a9c020eSBarry Smith   } else {
51918a9c020eSBarry Smith     *A_loc = A;
51928a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51938a9c020eSBarry Smith   }
51943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51958a9c020eSBarry Smith }
51968a9c020eSBarry Smith 
51978a9c020eSBarry Smith /*@
51982920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
519925616d81SHong Zhang 
520032fba14fSHong Zhang   Not Collective
520125616d81SHong Zhang 
520225616d81SHong Zhang   Input Parameters:
520325616d81SHong Zhang + A     - the matrix
520411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
520525616d81SHong Zhang 
520625616d81SHong Zhang   Output Parameter:
520725616d81SHong Zhang . A_loc - the local sequential matrix generated
520825616d81SHong Zhang 
520925616d81SHong Zhang   Level: developer
521025616d81SHong Zhang 
521177c65a98SStefano Zampini   Notes:
52122920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
52132920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
52142920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
52152920cce0SJacob Faibussowitsch 
521611a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
52178a9c020eSBarry Smith 
52182920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
52192920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
52202920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
52212920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
522277c65a98SStefano Zampini 
52231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
522425616d81SHong Zhang @*/
5225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5226d71ae5a4SJacob Faibussowitsch {
522701b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5228b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5229b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5230ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5231ce496241SStefano Zampini   PetscScalar       *ca, *cam;
523277c65a98SStefano Zampini   PetscMPIInt        size;
5233d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
52345a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52358661ff28SBarry Smith   PetscBool          match;
523625616d81SHong Zhang 
523725616d81SHong Zhang   PetscFunctionBegin;
52389566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
523928b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
524177c65a98SStefano Zampini   if (size == 1) {
524277c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52439566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
524477c65a98SStefano Zampini       *A_loc = mpimat->A;
524577c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52469566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
524777c65a98SStefano Zampini     }
52483ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
524977c65a98SStefano Zampini   }
525070a9ba44SHong Zhang 
52519566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5252f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5253f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52549371c9d4SSatish Balay   ai = a->i;
52559371c9d4SSatish Balay   aj = a->j;
52569371c9d4SSatish Balay   bi = b->i;
52579371c9d4SSatish Balay   bj = b->j;
52589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5260ce496241SStefano Zampini   aa = aav;
5261ce496241SStefano Zampini   ba = bav;
526201b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5264dea91ad1SHong Zhang     ci[0] = 0;
5265ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5268dea91ad1SHong Zhang     k = 0;
526901b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52705a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52715a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
527201b7ae99SHong Zhang       /* off-diagonal portion of A */
52735a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52745a7d977cSHong Zhang         col = cmap[*bj];
52755a7d977cSHong Zhang         if (col >= cstart) break;
52769371c9d4SSatish Balay         cj[k] = col;
52779371c9d4SSatish Balay         bj++;
52785a7d977cSHong Zhang         ca[k++] = *ba++;
52795a7d977cSHong Zhang       }
52805a7d977cSHong Zhang       /* diagonal portion of A */
52815a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52825a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52835a7d977cSHong Zhang         ca[k++] = *aa++;
52845a7d977cSHong Zhang       }
52855a7d977cSHong Zhang       /* off-diagonal portion of A */
52865a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52875a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52885a7d977cSHong Zhang         ca[k++] = *ba++;
52895a7d977cSHong Zhang       }
529025616d81SHong Zhang     }
5291dea91ad1SHong Zhang     /* put together the new matrix */
52929566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5293dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5294dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5295dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5296e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5297e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5298dea91ad1SHong Zhang     mat->nonew   = 0;
52995a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
53005a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5301fff043a9SJunchao Zhang     ci  = mat->i;
5302fff043a9SJunchao Zhang     cj  = mat->j;
53039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
53045a7d977cSHong Zhang     for (i = 0; i < am; i++) {
53055a7d977cSHong Zhang       /* off-diagonal portion of A */
53065a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
53075a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
53085a7d977cSHong Zhang         col = cmap[*bj];
53095a7d977cSHong Zhang         if (col >= cstart) break;
53109371c9d4SSatish Balay         *cam++ = *ba++;
53119371c9d4SSatish Balay         bj++;
53125a7d977cSHong Zhang       }
53135a7d977cSHong Zhang       /* diagonal portion of A */
5314ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5315a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
53165a7d977cSHong Zhang       /* off-diagonal portion of A */
5317f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
53189371c9d4SSatish Balay         *cam++ = *ba++;
53199371c9d4SSatish Balay         bj++;
5320f33d1a9aSHong Zhang       }
53215a7d977cSHong Zhang     }
53229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
532398921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
53259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
53269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
532825616d81SHong Zhang }
532925616d81SHong Zhang 
5330ed502f03SStefano Zampini /*@
533111a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
53324cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5333ed502f03SStefano Zampini 
5334ed502f03SStefano Zampini   Not Collective
5335ed502f03SStefano Zampini 
5336ed502f03SStefano Zampini   Input Parameters:
5337ed502f03SStefano Zampini + A     - the matrix
533811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5339ed502f03SStefano Zampini 
5340d8d19677SJose E. Roman   Output Parameters:
53412ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5342ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5343ed502f03SStefano Zampini 
5344ed502f03SStefano Zampini   Level: developer
5345ed502f03SStefano Zampini 
534611a5261eSBarry Smith   Note:
53472ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53484cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5349ed502f03SStefano Zampini 
53501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5351ed502f03SStefano Zampini @*/
5352d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5353d71ae5a4SJacob Faibussowitsch {
5354ed502f03SStefano Zampini   Mat             Ao, Ad;
5355ed502f03SStefano Zampini   const PetscInt *cmap;
5356ed502f03SStefano Zampini   PetscMPIInt     size;
5357ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5358ed502f03SStefano Zampini 
5359ed502f03SStefano Zampini   PetscFunctionBegin;
53609566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5362ed502f03SStefano Zampini   if (size == 1) {
5363ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53649566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5365ed502f03SStefano Zampini       *A_loc = Ad;
5366ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53679566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5368ed502f03SStefano Zampini     }
53699566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5371ed502f03SStefano Zampini   }
53729566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53739566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5374ed502f03SStefano Zampini   if (f) {
53759566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5376ed502f03SStefano Zampini   } else {
5377ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5378ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5379ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5380ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5381ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5382ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5383ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5384ed502f03SStefano Zampini     PetscScalar       *ca;
5385ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5386ed502f03SStefano Zampini 
53879566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53889566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5391ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5392ed502f03SStefano Zampini       PetscInt k;
53939566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53949566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53959566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5396ed502f03SStefano Zampini       ci[0] = 0;
5397ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5398ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5399ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5400ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5401ed502f03SStefano Zampini         /* diagonal portion of A */
5402ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5403ed502f03SStefano Zampini           cj[k] = *aj++;
5404ed502f03SStefano Zampini           ca[k] = *aa++;
5405ed502f03SStefano Zampini         }
5406ed502f03SStefano Zampini         /* off-diagonal portion of A */
5407ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5408ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5409ed502f03SStefano Zampini           ca[k] = *ba++;
5410ed502f03SStefano Zampini         }
5411ed502f03SStefano Zampini       }
5412ed502f03SStefano Zampini       /* put together the new matrix */
54139566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5414ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5415ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5416ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5417ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5418ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5419ed502f03SStefano Zampini       c->nonew   = 0;
54209566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5421ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
54229566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5423ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5424ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5425ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5426ed502f03SStefano Zampini         /* diagonal portion of A */
5427ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5428ed502f03SStefano Zampini         /* off-diagonal portion of A */
5429ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5430ed502f03SStefano Zampini       }
54319566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
543298921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
54339566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
54349566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5435ed502f03SStefano Zampini     if (glob) {
5436ed502f03SStefano Zampini       PetscInt cst, *gidx;
5437ed502f03SStefano Zampini 
54389566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54399566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5440ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5441ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54429566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5443ed502f03SStefano Zampini     }
5444ed502f03SStefano Zampini   }
54459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5447ed502f03SStefano Zampini }
5448ed502f03SStefano Zampini 
544932fba14fSHong Zhang /*@C
545011a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
545132fba14fSHong Zhang 
545232fba14fSHong Zhang   Not Collective
545332fba14fSHong Zhang 
545432fba14fSHong Zhang   Input Parameters:
545532fba14fSHong Zhang + A     - the matrix
545611a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
545720f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
545820f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
545932fba14fSHong Zhang 
546032fba14fSHong Zhang   Output Parameter:
546132fba14fSHong Zhang . A_loc - the local sequential matrix generated
546232fba14fSHong Zhang 
546332fba14fSHong Zhang   Level: developer
546432fba14fSHong Zhang 
54651cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
546632fba14fSHong Zhang @*/
5467d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5468d71ae5a4SJacob Faibussowitsch {
546932fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
547032fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
547132fba14fSHong Zhang   IS          isrowa, iscola;
547232fba14fSHong Zhang   Mat        *aloc;
54734a2b5492SBarry Smith   PetscBool   match;
547432fba14fSHong Zhang 
547532fba14fSHong Zhang   PetscFunctionBegin;
54769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
547728b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
547932fba14fSHong Zhang   if (!row) {
54809371c9d4SSatish Balay     start = A->rmap->rstart;
54819371c9d4SSatish Balay     end   = A->rmap->rend;
54829566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
548332fba14fSHong Zhang   } else {
548432fba14fSHong Zhang     isrowa = *row;
548532fba14fSHong Zhang   }
548632fba14fSHong Zhang   if (!col) {
5487d0f46423SBarry Smith     start = A->cmap->rstart;
548832fba14fSHong Zhang     cmap  = a->garray;
5489d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5490d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
549232fba14fSHong Zhang     ncols = 0;
549332fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
549432fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
549532fba14fSHong Zhang       else break;
549632fba14fSHong Zhang     }
549732fba14fSHong Zhang     imark = i;
549832fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
549932fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
55009566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
550132fba14fSHong Zhang   } else {
550232fba14fSHong Zhang     iscola = *col;
550332fba14fSHong Zhang   }
550432fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
55059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
550632fba14fSHong Zhang     aloc[0] = *A_loc;
550732fba14fSHong Zhang   }
55089566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5509109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
55109566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5511109e0772SStefano Zampini   }
551232fba14fSHong Zhang   *A_loc = aloc[0];
55139566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
551448a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
551548a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
55169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
55173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
551832fba14fSHong Zhang }
551932fba14fSHong Zhang 
55205c65b9ecSFande Kong /*
55215c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
55225c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
55235c65b9ecSFande Kong  * on a global size.
55245c65b9ecSFande Kong  * */
5525ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5526d71ae5a4SJacob Faibussowitsch {
55275c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5528f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5529131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5530131c27b5Sprj-   PetscMPIInt            owner;
55315c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
55325c65b9ecSFande Kong   const PetscInt        *lrowindices;
55335c65b9ecSFande Kong   PetscSF                sf, osf;
55345c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55355c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55365c65b9ecSFande Kong   MPI_Comm               comm;
55375c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5538fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55395c65b9ecSFande Kong 
55405c65b9ecSFande Kong   PetscFunctionBegin;
55419566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55425c65b9ecSFande Kong   /* plocalsize is the number of roots
55435c65b9ecSFande Kong    * nrows is the number of leaves
55445c65b9ecSFande Kong    * */
55459566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55469566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55479566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55489566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55495c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55505c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55515c65b9ecSFande Kong      * The row could be local or remote
55525c65b9ecSFande Kong      * */
555334bcad68SFande Kong     owner = 0;
555434bcad68SFande Kong     lidx  = 0;
55559566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55565c65b9ecSFande Kong     iremote[i].index = lidx;
55575c65b9ecSFande Kong     iremote[i].rank  = owner;
55585c65b9ecSFande Kong   }
55595c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55609566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5561f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55625c65b9ecSFande Kong    * offsets
55635c65b9ecSFande Kong    * */
55649566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5567bc8e477aSFande Kong 
55689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55709566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55715c65b9ecSFande Kong   roffsets[0] = 0;
55725c65b9ecSFande Kong   roffsets[1] = 0;
55735c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55744cf0e950SBarry Smith     /* diagonal */
55755c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55764cf0e950SBarry Smith     /* off-diagonal */
55775c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55785c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55795c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55805c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55815c65b9ecSFande Kong   }
55829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55845c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55859566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55869566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55879566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55889566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55909566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55919566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55925c65b9ecSFande Kong   dntotalcols = 0;
55935c65b9ecSFande Kong   ontotalcols = 0;
5594bc8e477aSFande Kong   ncol        = 0;
55955c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55965c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5597bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55984cf0e950SBarry Smith     /* diagonal */
55995c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
56004cf0e950SBarry Smith     /* off-diagonal */
56015c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
56025c65b9ecSFande Kong   }
56035c65b9ecSFande Kong   /* We do not need to figure the right number of columns
56045c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
56055c65b9ecSFande Kong    * */
56069566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
56079566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
56089566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
56095c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56104cf0e950SBarry Smith   /* diagonal */
56119566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
56124cf0e950SBarry Smith   /* off-diagonal */
56139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
56144cf0e950SBarry Smith   /* diagonal */
56159566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
56164cf0e950SBarry Smith   /* off-diagonal */
56179566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
56185c65b9ecSFande Kong   dntotalcols = 0;
56195c65b9ecSFande Kong   ontotalcols = 0;
56205c65b9ecSFande Kong   ntotalcols  = 0;
56215c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
562234bcad68SFande Kong     owner = 0;
56239566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
56245c65b9ecSFande Kong     /* Set iremote for diag matrix */
56255c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
56265c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
56275c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
56285c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
56295c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
56305c65b9ecSFande Kong     }
56314cf0e950SBarry Smith     /* off-diagonal */
56325c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
56335c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
56345c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56355c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56365c65b9ecSFande Kong     }
56375c65b9ecSFande Kong   }
56389566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56399566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56409566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56419566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56425c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56435c65b9ecSFande Kong    * Diag matrix
56445c65b9ecSFande Kong    * */
56459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56469566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56479566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56485c65b9ecSFande Kong 
56499566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56504cf0e950SBarry Smith   /* off-diagonal */
56519566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56529566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56539566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56564cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56579566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56589566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56599566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56605c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56615c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56629566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56635c65b9ecSFande Kong   /* We want P_oth store global indices */
56649566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56655c65b9ecSFande Kong   /* Use memory scalable approach */
56669566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56679566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56705c65b9ecSFande Kong   /* Convert back to local indices */
56715c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56729566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56735c65b9ecSFande Kong   nout = 0;
56749566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
567508401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56769566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56775c65b9ecSFande Kong   /* Exchange values */
56789566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56799566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56819566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56825c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56835c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56865c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56879566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56889566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56909566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56925c65b9ecSFande Kong }
56935c65b9ecSFande Kong 
56945c65b9ecSFande Kong /*
56955c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56965c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56975c65b9ecSFande Kong  * */
5698d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5699d71ae5a4SJacob Faibussowitsch {
57005c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5701bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5702bc8e477aSFande Kong   IS          rows, map;
5703bc8e477aSFande Kong   PetscHMapI  hamp;
5704bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
57055c65b9ecSFande Kong   MPI_Comm    comm;
57065c65b9ecSFande Kong   PetscSF     sf, osf;
5707bc8e477aSFande Kong   PetscBool   has;
57085c65b9ecSFande Kong 
57095c65b9ecSFande Kong   PetscFunctionBegin;
57109566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
57119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
57125c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
57135c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
57145c65b9ecSFande Kong    * */
57155c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
57165c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5717eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
57189566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5719bc8e477aSFande Kong     count = 0;
5720bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5721bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5722bc8e477aSFande Kong       key = a->garray[i] / dof;
57239566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5724bc8e477aSFande Kong       if (!has) {
5725bc8e477aSFande Kong         mapping[i] = count;
57269566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5727bc8e477aSFande Kong       } else {
5728bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5729bc8e477aSFande Kong         mapping[i] = count - 1;
57305c65b9ecSFande Kong       }
5731bc8e477aSFande Kong     }
57329566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
57339566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5734eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57359566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57365c65b9ecSFande Kong     off = 0;
57379566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57389566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57399566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57409566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57415c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57429566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57439566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57449566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57459566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57475c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57485c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
574935cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5750fff043a9SJunchao Zhang      */
5751fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5752fff043a9SJunchao Zhang 
57539566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57549566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
575508401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57565c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57575c65b9ecSFande Kong     /* Update values in place */
57589566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57599566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57609566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57619566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57629566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57639566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57649566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57659566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57666718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57695c65b9ecSFande Kong }
57705c65b9ecSFande Kong 
577125616d81SHong Zhang /*@C
577220f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
577325616d81SHong Zhang 
5774c3339decSBarry Smith   Collective
577525616d81SHong Zhang 
577625616d81SHong Zhang   Input Parameters:
577711a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
577811a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
577911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
578025616d81SHong Zhang 
5781f1a722f8SMatthew G. Knepley   Output Parameters:
578227430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
578327430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5784f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
578525616d81SHong Zhang 
578625616d81SHong Zhang   Level: developer
578725616d81SHong Zhang 
578820f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
578925616d81SHong Zhang @*/
5790d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5791d71ae5a4SJacob Faibussowitsch {
5792899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5793b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
579425616d81SHong Zhang   IS          isrowb, iscolb;
57950298fd71SBarry Smith   Mat        *bseq = NULL;
579625616d81SHong Zhang 
579725616d81SHong Zhang   PetscFunctionBegin;
579820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
579920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
580125616d81SHong Zhang 
580225616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5803d0f46423SBarry Smith     start = A->cmap->rstart;
580425616d81SHong Zhang     cmap  = a->garray;
5805d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5806d0f46423SBarry Smith     nzB   = a->B->cmap->n;
58079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
580825616d81SHong Zhang     ncols = 0;
58090390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
581025616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
581125616d81SHong Zhang       else break;
581225616d81SHong Zhang     }
581325616d81SHong Zhang     imark = i;
58140390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
58150390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
58169566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
58179566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
581825616d81SHong Zhang   } else {
581908401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
58209371c9d4SSatish Balay     isrowb = *rowb;
58219371c9d4SSatish Balay     iscolb = *colb;
58229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
582325616d81SHong Zhang     bseq[0] = *B_seq;
582425616d81SHong Zhang   }
58259566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
582625616d81SHong Zhang   *B_seq = bseq[0];
58279566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
582825616d81SHong Zhang   if (!rowb) {
58299566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
583025616d81SHong Zhang   } else {
583125616d81SHong Zhang     *rowb = isrowb;
583225616d81SHong Zhang   }
583325616d81SHong Zhang   if (!colb) {
58349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
583525616d81SHong Zhang   } else {
583625616d81SHong Zhang     *colb = iscolb;
583725616d81SHong Zhang   }
58389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
584025616d81SHong Zhang }
5841429d309bSHong Zhang 
5842f8487c73SHong Zhang /*
584327430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
584401b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5845429d309bSHong Zhang 
5846c3339decSBarry Smith     Collective
5847429d309bSHong Zhang 
5848429d309bSHong Zhang    Input Parameters:
584927430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
585027430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5851429d309bSHong Zhang 
5852429d309bSHong Zhang    Output Parameter:
58530298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58540298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58550298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5856598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5857429d309bSHong Zhang 
585811a5261eSBarry Smith     Developer Note:
585911a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58606eb45d04SBarry Smith      for this matrix. This is not desirable..
58616eb45d04SBarry Smith 
5862429d309bSHong Zhang     Level: developer
5863429d309bSHong Zhang 
5864f8487c73SHong Zhang */
58656497c311SBarry Smith 
5866d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5867d71ae5a4SJacob Faibussowitsch {
5868899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
58694b8d542aSHong Zhang   VecScatter         ctx;
5870ce94432eSBarry Smith   MPI_Comm           comm;
58713515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58726497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
58733515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5874277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
58756497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5876277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5877ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5878ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5879429d309bSHong Zhang 
5880429d309bSHong Zhang   PetscFunctionBegin;
58819566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5883a7c7454dSHong Zhang 
588420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
588520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5888a6b2eed2SHong Zhang 
5889ec07b8f8SHong Zhang   if (size == 1) {
5890ec07b8f8SHong Zhang     startsj_s = NULL;
5891ec07b8f8SHong Zhang     bufa_ptr  = NULL;
589252f7967eSHong Zhang     *B_oth    = NULL;
58933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5894ec07b8f8SHong Zhang   }
5895ec07b8f8SHong Zhang 
5896fa83eaafSHong Zhang   ctx = a->Mvctx;
58974b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58984b8d542aSHong Zhang 
58999566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
59003515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
59019566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
59029566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
59039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5904ddea5d60SJunchao Zhang   rwaits = reqs;
59058e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5906429d309bSHong Zhang 
5907b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5908429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5909a6b2eed2SHong Zhang     /* i-array */
5910a6b2eed2SHong Zhang     /*  post receives */
59119566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5912a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
591374268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5914e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
59156497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5916429d309bSHong Zhang     }
5917a6b2eed2SHong Zhang 
5918a6b2eed2SHong Zhang     /* pack the outgoing message */
59199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
59202205254eSKarl Rupp 
59212205254eSKarl Rupp     sstartsj[0] = 0;
59222205254eSKarl Rupp     rstartsj[0] = 0;
5923a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
59243515ee7fSJunchao Zhang     if (nsends) {
59253515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
59269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
59273515ee7fSJunchao Zhang     }
5928a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
59293515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5930e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
593187025532SHong Zhang       for (j = 0; j < nrows; j++) {
5932d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5933e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
59349566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
59352205254eSKarl Rupp 
5936e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59372205254eSKarl Rupp 
5938e42f35eeSHong Zhang           len += ncols;
59399566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5940e42f35eeSHong Zhang         }
5941a6b2eed2SHong Zhang         k++;
5942429d309bSHong Zhang       }
59436497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59442205254eSKarl Rupp 
5945dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5946429d309bSHong Zhang     }
594787025532SHong Zhang     /* recvs and sends of i-array are completed */
59489566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59499566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5950e42f35eeSHong Zhang 
5951a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5954a6b2eed2SHong Zhang 
595587025532SHong Zhang     /* create i-array of B_oth */
59569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59572205254eSKarl Rupp 
595887025532SHong Zhang     b_othi[0] = 0;
5959a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5960a6b2eed2SHong Zhang     k         = 0;
5961a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59623515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59633515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
596487025532SHong Zhang       for (j = 0; j < nrows; j++) {
596587025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59669566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5967f91af8c7SBarry Smith         k++;
5968a6b2eed2SHong Zhang       }
5969dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5970a6b2eed2SHong Zhang     }
59719566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5972a6b2eed2SHong Zhang 
59736aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5976a6b2eed2SHong Zhang 
597787025532SHong Zhang     /* j-array */
5978a6b2eed2SHong Zhang     /*  post receives of j-array */
5979a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
598087025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59816497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5982a6b2eed2SHong Zhang     }
5983e42f35eeSHong Zhang 
5984e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59853515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5986a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5987e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5988a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
598987025532SHong Zhang       for (j = 0; j < nrows; j++) {
5990d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5991e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59929566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5993ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59949566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5995e42f35eeSHong Zhang         }
599687025532SHong Zhang       }
59976497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
599887025532SHong Zhang     }
599987025532SHong Zhang 
600087025532SHong Zhang     /* recvs and sends of j-array are completed */
60019566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
600287025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
6003b7f45c76SHong Zhang     sstartsj = *startsj_s;
60041d79065fSBarry Smith     rstartsj = *startsj_r;
600587025532SHong Zhang     bufa     = *bufa_ptr;
60069566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
6007ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
600887025532SHong Zhang 
600987025532SHong Zhang   /* a-array */
601087025532SHong Zhang   /*  post receives of a-array */
601187025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
601287025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
60136497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
601487025532SHong Zhang   }
6015e42f35eeSHong Zhang 
6016e42f35eeSHong Zhang   /* pack the outgoing message a-array */
60173515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
601887025532SHong Zhang   for (i = 0; i < nsends; i++) {
6019e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
602087025532SHong Zhang     bufA  = bufa + sstartsj[i];
602187025532SHong Zhang     for (j = 0; j < nrows; j++) {
6022d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
6023e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
60249566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
6025ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
60269566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
6027e42f35eeSHong Zhang       }
6028a6b2eed2SHong Zhang     }
60296497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
6030a6b2eed2SHong Zhang   }
603187025532SHong Zhang   /* recvs and sends of a-array are completed */
60329566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
60339566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
6034a6b2eed2SHong Zhang 
603587025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6036dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
6037dd460d27SBarry Smith 
6038a6b2eed2SHong Zhang     /* put together the new matrix */
60399566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6040a6b2eed2SHong Zhang 
6041a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6042a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
604387025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6044e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6045e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
604687025532SHong Zhang     b_oth->nonew   = 0;
6047a6b2eed2SHong Zhang 
60489566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6049b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60509566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60519566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6052dea91ad1SHong Zhang     } else {
6053b7f45c76SHong Zhang       *startsj_s = sstartsj;
60541d79065fSBarry Smith       *startsj_r = rstartsj;
605587025532SHong Zhang       *bufa_ptr  = bufa;
605687025532SHong Zhang     }
6057fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60589566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6059dea91ad1SHong Zhang   }
60603515ee7fSJunchao Zhang 
60619566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60629566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6065429d309bSHong Zhang }
6066ccd8e176SBarry Smith 
6067cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6068cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6069ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60709779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6071a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6072191b95cbSRichard Tran Mills #endif
6073ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6074cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60755d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6076cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60775d7652ecSHong Zhang #endif
6078d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6079d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6080d24d4204SJose E. Roman #endif
608163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
608263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
608363c07aadSStefano Zampini #endif
60843338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60853338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60863338378cSStefano Zampini #endif
6087d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6088d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6089d5e393b6SSuyash Tandon #endif
60903d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60913d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60923d0639e7SStefano Zampini #endif
6093d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60944222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60954222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
609617667f90SBarry Smith 
6097fc4dec0aSBarry Smith /*
6098fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6099fc4dec0aSBarry Smith 
6100fc4dec0aSBarry Smith                n                       p                          p
61012da392ccSBarry Smith         [             ]       [             ]         [                 ]
61022da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
61032da392ccSBarry Smith         [             ]       [             ]         [                 ]
6104fc4dec0aSBarry Smith 
6105fc4dec0aSBarry Smith */
6106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6107d71ae5a4SJacob Faibussowitsch {
6108fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6109fc4dec0aSBarry Smith 
6110fc4dec0aSBarry Smith   PetscFunctionBegin;
61119566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
61129566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6113fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
61149566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
61159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
61167fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
61179566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
61189566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
61193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6120fc4dec0aSBarry Smith }
6121fc4dec0aSBarry Smith 
6122d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6123d71ae5a4SJacob Faibussowitsch {
61246718818eSStefano Zampini   PetscBool cisdense;
6125fc4dec0aSBarry Smith 
6126fc4dec0aSBarry Smith   PetscFunctionBegin;
612708401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
61289566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
61299566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6130d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
613148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
61329566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6133f75ecaa4SHong Zhang 
61344222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
61353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6136fc4dec0aSBarry Smith }
6137fc4dec0aSBarry Smith 
6138d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6139d71ae5a4SJacob Faibussowitsch {
61404222ddf1SHong Zhang   Mat_Product *product = C->product;
61414222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6142fc4dec0aSBarry Smith 
6143fc4dec0aSBarry Smith   PetscFunctionBegin;
614420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
614520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61464222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61474222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6149fc4dec0aSBarry Smith }
6150fc4dec0aSBarry Smith 
6151d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6152d71ae5a4SJacob Faibussowitsch {
61534222ddf1SHong Zhang   Mat_Product *product = C->product;
61544222ddf1SHong Zhang 
61554222ddf1SHong Zhang   PetscFunctionBegin;
615648a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61584222ddf1SHong Zhang }
6159394ed5ebSJunchao Zhang 
616027430b45SBarry Smith /*
616127430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6162394ed5ebSJunchao Zhang 
6163394ed5ebSJunchao Zhang   Input Parameters:
6164394ed5ebSJunchao Zhang 
6165651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6166651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6167394ed5ebSJunchao Zhang 
6168158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6169394ed5ebSJunchao Zhang 
6170394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6171394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6172394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6173394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6174394ed5ebSJunchao Zhang 
6175394ed5ebSJunchao Zhang     Similar for Set2.
6176394ed5ebSJunchao Zhang 
6177394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6178394ed5ebSJunchao Zhang 
6179158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6180394ed5ebSJunchao Zhang 
6181394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6182394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6183394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6184394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6185394ed5ebSJunchao Zhang */
6186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6187d71ae5a4SJacob Faibussowitsch {
6188394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6189394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6190394ed5ebSJunchao Zhang 
6191394ed5ebSJunchao Zhang   PetscFunctionBegin;
61929566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6193394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6194394ed5ebSJunchao Zhang   i[0]        = 0;
6195394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6196394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6197394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6198394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6199394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6200394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6201394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6202394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6203394ed5ebSJunchao Zhang         imap1[t1] = t;
6204394ed5ebSJunchao Zhang         imap2[t2] = t;
6205394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6206394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
62079371c9d4SSatish Balay         t1++;
62089371c9d4SSatish Balay         t2++;
62099371c9d4SSatish Balay         t++;
6210394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6211394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6212394ed5ebSJunchao Zhang         imap1[t1] = t;
6213394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
62149371c9d4SSatish Balay         t1++;
62159371c9d4SSatish Balay         t++;
6216394ed5ebSJunchao Zhang       } else {
6217394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6218394ed5ebSJunchao Zhang         imap2[t2] = t;
6219394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
62209371c9d4SSatish Balay         t2++;
62219371c9d4SSatish Balay         t++;
6222394ed5ebSJunchao Zhang       }
6223394ed5ebSJunchao Zhang     }
6224394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6225394ed5ebSJunchao Zhang     while (b1 < e1) {
6226394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6227394ed5ebSJunchao Zhang       imap1[t1] = t;
6228394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
62299371c9d4SSatish Balay       t1++;
62309371c9d4SSatish Balay       t++;
6231394ed5ebSJunchao Zhang     }
6232394ed5ebSJunchao Zhang     while (b2 < e2) {
6233394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6234394ed5ebSJunchao Zhang       imap2[t2] = t;
6235394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
62369371c9d4SSatish Balay       t2++;
62379371c9d4SSatish Balay       t++;
6238394ed5ebSJunchao Zhang     }
62396497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6240394ed5ebSJunchao Zhang   }
62413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6242394ed5ebSJunchao Zhang }
6243394ed5ebSJunchao Zhang 
624427430b45SBarry Smith /*
624527430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6246394ed5ebSJunchao Zhang 
6247394ed5ebSJunchao Zhang   Input Parameters:
6248394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6249394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6250394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6251394ed5ebSJunchao Zhang 
6252394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6253394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6254394ed5ebSJunchao Zhang 
6255394ed5ebSJunchao Zhang   Output Parameters:
6256394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6257394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6258394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6259394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6260394ed5ebSJunchao Zhang 
6261394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6262158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6263158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6264394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6265394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6266394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6267394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6268394ed5ebSJunchao Zhang 
6269394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6270394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6271394ed5ebSJunchao Zhang 
6272394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6273394ed5ebSJunchao Zhang 
6274158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6275394ed5ebSJunchao Zhang */
6276d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6277d71ae5a4SJacob Faibussowitsch {
6278394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6279394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6280394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6281394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6282394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6283394ed5ebSJunchao Zhang 
6284394ed5ebSJunchao Zhang   PetscFunctionBegin;
62859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6287394ed5ebSJunchao Zhang   m = rend - rstart;
6288394ed5ebSJunchao Zhang 
6289651b1cf9SStefano Zampini   /* Skip negative rows */
6290651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62919371c9d4SSatish Balay     if (i[k] >= 0) break;
6292394ed5ebSJunchao Zhang 
6293394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6294394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6295394ed5ebSJunchao Zhang   */
6296394ed5ebSJunchao Zhang   while (k < n) {
6297394ed5ebSJunchao Zhang     row = i[k];
6298394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62999371c9d4SSatish Balay     for (s = k; s < n; s++)
63009371c9d4SSatish Balay       if (i[s] != row) break;
6301651b1cf9SStefano Zampini 
63021690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6303394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
63041690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
630554c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6306394ed5ebSJunchao Zhang     }
63079566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6308158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6309394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6310394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6311394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6312394ed5ebSJunchao Zhang 
6313394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6314394ed5ebSJunchao Zhang     Atot += mid - k;
6315394ed5ebSJunchao Zhang     Btot += s - mid;
6316394ed5ebSJunchao Zhang 
6317651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6318394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6319394ed5ebSJunchao Zhang       col = j[p];
63209371c9d4SSatish Balay       do {
63211690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
63229371c9d4SSatish Balay         p++;
6323651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6324394ed5ebSJunchao Zhang       Annz++;
6325394ed5ebSJunchao Zhang     }
6326394ed5ebSJunchao Zhang 
6327651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6328394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6329394ed5ebSJunchao Zhang       col = j[p];
6330d71ae5a4SJacob Faibussowitsch       do {
6331d71ae5a4SJacob Faibussowitsch         p++;
6332d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6333394ed5ebSJunchao Zhang       Bnnz++;
6334394ed5ebSJunchao Zhang     }
6335394ed5ebSJunchao Zhang     k = s;
6336394ed5ebSJunchao Zhang   }
6337394ed5ebSJunchao Zhang 
6338394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6339158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6340158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6341158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6342158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6343394ed5ebSJunchao Zhang 
63446aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6345394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6346394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6347394ed5ebSJunchao Zhang     k   = rowBegin[r];
6348394ed5ebSJunchao Zhang     mid = rowMid[r];
6349394ed5ebSJunchao Zhang     s   = rowEnd[r];
63508e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63518e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6352394ed5ebSJunchao Zhang     Atot += mid - k;
6353394ed5ebSJunchao Zhang     Btot += s - mid;
6354394ed5ebSJunchao Zhang 
6355394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6356394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6357394ed5ebSJunchao Zhang       col = j[p];
6358394ed5ebSJunchao Zhang       q   = p;
6359d71ae5a4SJacob Faibussowitsch       do {
6360d71ae5a4SJacob Faibussowitsch         p++;
6361d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6362394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6363394ed5ebSJunchao Zhang       Annz++;
6364394ed5ebSJunchao Zhang     }
6365394ed5ebSJunchao Zhang 
6366394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6367394ed5ebSJunchao Zhang       col = j[p];
6368394ed5ebSJunchao Zhang       q   = p;
6369d71ae5a4SJacob Faibussowitsch       do {
6370d71ae5a4SJacob Faibussowitsch         p++;
6371d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6372394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6373394ed5ebSJunchao Zhang       Bnnz++;
6374394ed5ebSJunchao Zhang     }
6375394ed5ebSJunchao Zhang   }
6376394ed5ebSJunchao Zhang   /* Output */
6377394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6378394ed5ebSJunchao Zhang   *Annz_  = Annz;
6379394ed5ebSJunchao Zhang   *Atot_  = Atot;
6380394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6381394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6382394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6383394ed5ebSJunchao Zhang   *Btot_  = Btot;
6384394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6386394ed5ebSJunchao Zhang }
6387394ed5ebSJunchao Zhang 
638827430b45SBarry Smith /*
638927430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6390158ec288SJunchao Zhang 
6391158ec288SJunchao Zhang   Input Parameters:
6392158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6393158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6394158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6395651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6396158ec288SJunchao Zhang 
6397158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6398158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6399158ec288SJunchao Zhang 
6400158ec288SJunchao Zhang   Example:
6401158ec288SJunchao Zhang     nnz1 = 4
6402158ec288SJunchao Zhang     nnz  = 6
6403158ec288SJunchao Zhang     imap = [1,3,4,5]
6404158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6405158ec288SJunchao Zhang    then,
6406158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6407158ec288SJunchao Zhang */
6408d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6409d71ae5a4SJacob Faibussowitsch {
6410158ec288SJunchao Zhang   PetscCount k, p;
6411158ec288SJunchao Zhang 
6412158ec288SJunchao Zhang   PetscFunctionBegin;
6413158ec288SJunchao Zhang   jmap_new[0] = 0;
6414158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6415158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6416158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6417158ec288SJunchao Zhang   }
6418158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
64193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6420158ec288SJunchao Zhang }
6421158ec288SJunchao Zhang 
642249abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
64232c4ab24aSJunchao Zhang {
642449abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
64252c4ab24aSJunchao Zhang 
64262c4ab24aSJunchao Zhang   PetscFunctionBegin;
64272c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
64282c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
64292c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
64302c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
64312c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
64322c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
64332c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
64342c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
64352c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
64362c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64372c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64382c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64392c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64402c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64412c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64422c4ab24aSJunchao Zhang }
64432c4ab24aSJunchao Zhang 
6444d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6445d71ae5a4SJacob Faibussowitsch {
6446394ed5ebSJunchao Zhang   MPI_Comm             comm;
6447394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6448394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6449394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6450394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64512c4ab24aSJunchao Zhang   PetscContainer       container;
64522c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6453394ed5ebSJunchao Zhang 
6454394ed5ebSJunchao Zhang   PetscFunctionBegin;
64559566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6457cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6458eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6459cbc6b225SStefano Zampini #else
64609566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6461cbc6b225SStefano Zampini #endif
64629566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6463cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6464cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6465cbc6b225SStefano Zampini 
64669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64739566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64749566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6475394ed5ebSJunchao Zhang 
64766aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6477394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6478394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6479e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6480e8729f6fSJunchao Zhang 
6481e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6482394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6483394ed5ebSJunchao Zhang 
6484394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6485394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6486394ed5ebSJunchao Zhang      will have positive row indices.
6487394ed5ebSJunchao Zhang   */
6488394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64891690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64901690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6491f7d195e4SLawrence Mitchell     else {
6492f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64931690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6494f7d195e4SLawrence Mitchell     }
6495394ed5ebSJunchao Zhang   }
6496394ed5ebSJunchao Zhang 
6497da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64989566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6499651b1cf9SStefano Zampini 
6500651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6501651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
65021690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
65036497c311SBarry Smith   PetscCount i1start = k;
6504651b1cf9SStefano Zampini 
65051690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
65061690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6507394ed5ebSJunchao Zhang 
6508394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6509394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6510394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6511394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6512394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6513394ed5ebSJunchao Zhang   const PetscInt *ranges;
6514394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6515394ed5ebSJunchao Zhang 
65169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
65179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6518394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6519394ed5ebSJunchao Zhang     PetscMPIInt owner;
6520394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6521cbc6b225SStefano Zampini 
6522394ed5ebSJunchao Zhang     /* Locate a row range */
6523394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
65249566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6525394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6526394ed5ebSJunchao Zhang 
6527394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
65289566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6529394ed5ebSJunchao Zhang 
6530394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6531394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6532394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6533394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6534394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6535cbc6b225SStefano Zampini 
65369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65379566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65389566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65399566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6540394ed5ebSJunchao Zhang       sendto   = sendto2;
6541394ed5ebSJunchao Zhang       nentries = nentries2;
6542394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6543394ed5ebSJunchao Zhang     }
6544394ed5ebSJunchao Zhang     sendto[nsend] = owner;
65456497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6546394ed5ebSJunchao Zhang     nsend++;
6547394ed5ebSJunchao Zhang     k = p;
6548394ed5ebSJunchao Zhang   }
6549394ed5ebSJunchao Zhang 
6550394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6551394ed5ebSJunchao Zhang   PetscSF      sf1;
6552394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6553394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6554394ed5ebSJunchao Zhang   PetscInt    *offsets;
6555394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6556394ed5ebSJunchao Zhang 
65579566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6560394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6561394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6562394ed5ebSJunchao Zhang     iremote[k].index = 0;
6563394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
656454c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6565394ed5ebSJunchao Zhang   }
65669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65679566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65689566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6570e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6571394ed5ebSJunchao Zhang 
6572394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6573394ed5ebSJunchao Zhang   PetscSF sf2;
6574394ed5ebSJunchao Zhang   nroots  = nroots2;
6575394ed5ebSJunchao Zhang   nleaves = nleaves2;
65769566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65779566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6579394ed5ebSJunchao Zhang   p = 0;
6580394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
658154c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6582394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6583394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65846497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6585394ed5ebSJunchao Zhang     }
6586394ed5ebSJunchao Zhang   }
65879566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6588394ed5ebSJunchao Zhang 
6589394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6590394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6591394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6593834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6594834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6595de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6596de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6597834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6598834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6599834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6600834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6601394ed5ebSJunchao Zhang 
66029566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
66039566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6604394ed5ebSJunchao Zhang 
6605394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6606394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
66079566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6608394ed5ebSJunchao Zhang 
6609651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6610651b1cf9SStefano Zampini   PetscCount *Cperm1;
6611834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6612de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6613651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6614834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6615651b1cf9SStefano Zampini 
6616651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6617651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6618651b1cf9SStefano Zampini   PetscBool hypre;
661917b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6620651b1cf9SStefano Zampini   if (hypre) {
6621651b1cf9SStefano Zampini     PetscInt *minj;
6622651b1cf9SStefano Zampini     PetscBT   hasdiag;
6623651b1cf9SStefano Zampini 
6624651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6625651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
66261690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6627651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6628651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6629651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6630651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6631651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6632651b1cf9SStefano Zampini     }
6633651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6634651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6635651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6636651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6637651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6638651b1cf9SStefano Zampini     }
6639651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6640651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6641651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6642651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6643651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6644651b1cf9SStefano Zampini     }
6645651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6646651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6647651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6648651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6649651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6650651b1cf9SStefano Zampini     }
6651651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6652651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6653651b1cf9SStefano Zampini   }
6654651b1cf9SStefano Zampini 
6655651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6656651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6657651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6658651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6659394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6660394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6661394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6662394ed5ebSJunchao Zhang 
6663651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66649566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6665651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66669566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6667394ed5ebSJunchao Zhang 
6668394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6669394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6670394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6671394ed5ebSJunchao Zhang 
66729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6676394ed5ebSJunchao Zhang 
6677394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6678158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6679158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6680158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6681158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6682394ed5ebSJunchao Zhang 
66839566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66849566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6685158ec288SJunchao Zhang 
6686158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6687158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6688158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6689158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6690158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6691158ec288SJunchao Zhang 
6692158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6693158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6694158ec288SJunchao Zhang 
6695158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6696158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6697158ec288SJunchao Zhang 
6698158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6699158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6700158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6701158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
67029566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
67039566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6704e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
67059566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6706394ed5ebSJunchao Zhang 
6707158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6708158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6709158ec288SJunchao Zhang 
6710394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6711394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6712394ed5ebSJunchao Zhang     PetscInt *Aj_new;
67139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
67149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
67159566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6716394ed5ebSJunchao Zhang     Aj = Aj_new;
6717394ed5ebSJunchao Zhang   }
6718394ed5ebSJunchao Zhang 
6719394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6720394ed5ebSJunchao Zhang     PetscInt *Bj_new;
67219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
67229566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
67239566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6724394ed5ebSJunchao Zhang     Bj = Bj_new;
6725394ed5ebSJunchao Zhang   }
6726394ed5ebSJunchao Zhang 
6727cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6728394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6729cbc6b225SStefano Zampini   MatType          rtype;
6730394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6731cf8ba265SJunchao Zhang   PetscObjectState state;
67329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
67339566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6734394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
67359371c9d4SSatish Balay   if (cstart) {
67369371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67379371c9d4SSatish Balay   }
6738c508b908SBarry Smith 
67399566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6740c508b908SBarry Smith 
6741c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6742c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67439566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67440da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6745c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6746c508b908SBarry Smith 
6747c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6748c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67499566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67500da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6751c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6752c508b908SBarry Smith 
67539566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67545bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6755cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6756462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6757cbc6b225SStefano Zampini 
6758394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6759394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
67609f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
67619f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
67629f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
67639f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
676417b874c6SStefano Zampini   a->maxnz   = a->nz;
676517b874c6SStefano Zampini   b->maxnz   = b->nz;
6766394ed5ebSJunchao Zhang 
6767cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67689566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67699566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67719566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6772cbc6b225SStefano Zampini 
67732c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67742c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67752c4ab24aSJunchao Zhang   coo->n       = coo_n;
67762c4ab24aSJunchao Zhang   coo->sf      = sf2;
67772c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67782c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67792c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67802c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67812c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67822c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67832c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67842c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67852c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67862c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67872c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67882c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67892c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67902c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67912c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67922c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67932c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67942c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67952c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67962c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67972c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67982c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67992c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
68002c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
68012c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
680249abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
68032c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
68042c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
68053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6806394ed5ebSJunchao Zhang }
6807394ed5ebSJunchao Zhang 
6808d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6809d71ae5a4SJacob Faibussowitsch {
6810394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6811394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6812394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
68132c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
68142c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
68152c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
68162c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
68172c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
68182c4ab24aSJunchao Zhang   PetscContainer       container;
68192c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6820394ed5ebSJunchao Zhang 
6821394ed5ebSJunchao Zhang   PetscFunctionBegin;
68222c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
68232c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
68242c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
68252c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
68262c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
68272c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
68282c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
68292c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
68302c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
68312c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
68322c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
68332c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
68342c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
68352c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
68362c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
68372c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
68382c4ab24aSJunchao Zhang 
68399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6841394ed5ebSJunchao Zhang 
6842394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68432c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6844394ed5ebSJunchao Zhang 
6845394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68462c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6847394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68482c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6849da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6850158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6851158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6852394ed5ebSJunchao Zhang   }
68532c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6854158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6855158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6856158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6857394ed5ebSJunchao Zhang   }
68582c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6859394ed5ebSJunchao Zhang 
6860394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68612c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6862394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6863394ed5ebSJunchao Zhang   }
68642c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6865394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6866394ed5ebSJunchao Zhang   }
68679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6870394ed5ebSJunchao Zhang }
6871394ed5ebSJunchao Zhang 
6872ccd8e176SBarry Smith /*MC
6873ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6874ccd8e176SBarry Smith 
6875ccd8e176SBarry Smith    Options Database Keys:
687611a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6877ccd8e176SBarry Smith 
6878ccd8e176SBarry Smith    Level: beginner
68790cd7f59aSBarry Smith 
68800cd7f59aSBarry Smith    Notes:
68812ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68820cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68830cd7f59aSBarry Smith     in the matrix
68840cd7f59aSBarry Smith 
688511a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
688611a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6887ccd8e176SBarry Smith 
68881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6889ccd8e176SBarry Smith M*/
6890d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6891d71ae5a4SJacob Faibussowitsch {
6892ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6893ccd8e176SBarry Smith   PetscMPIInt size;
6894ccd8e176SBarry Smith 
6895ccd8e176SBarry Smith   PetscFunctionBegin;
68969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68972205254eSKarl Rupp 
68984dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6899ccd8e176SBarry Smith   B->data       = (void *)b;
6900aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6901ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6902ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6903ccd8e176SBarry Smith   b->size       = size;
69042205254eSKarl Rupp 
69059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6906ccd8e176SBarry Smith 
6907ccd8e176SBarry Smith   /* build cache for off array entries formed */
69089566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
69092205254eSKarl Rupp 
6910ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6911f4259b30SLisandro Dalcin   b->colmap      = NULL;
6912f4259b30SLisandro Dalcin   b->garray      = NULL;
6913ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6914ccd8e176SBarry Smith 
6915ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
69160298fd71SBarry Smith   b->lvec  = NULL;
69170298fd71SBarry Smith   b->Mvctx = NULL;
6918ccd8e176SBarry Smith 
6919ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6920f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6921f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6922ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6923ccd8e176SBarry Smith 
6924f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
69250298fd71SBarry Smith   b->spptr = NULL;
6926f60c3dc2SHong Zhang 
69279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
69289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
69309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
69319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
69329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6933674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
69349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
69359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
69369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
69379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
69383d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
69399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69403d0639e7SStefano Zampini #endif
6941d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6942d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6943d5e393b6SSuyash Tandon #endif
69443d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69463d0639e7SStefano Zampini #endif
69479779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6949191b95cbSRichard Tran Mills #endif
69509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69539566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69545d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69565d7652ecSHong Zhang #endif
6957d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6959d24d4204SJose E. Roman #endif
69609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69623dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69653dad0653Sstefano_zampini #endif
69669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69709566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6972ccd8e176SBarry Smith }
697381824310SBarry Smith 
69745d83a8b1SBarry Smith /*@
697511a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
697603bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
697703bfb495SBarry Smith 
6978d083f849SBarry Smith   Collective
697903bfb495SBarry Smith 
698003bfb495SBarry Smith   Input Parameters:
698103bfb495SBarry Smith + comm - MPI communicator
698211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
698303bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6984d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69852ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69862ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69872ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6988483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
698904ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
699003bfb495SBarry Smith . a    - matrix values
6991483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69922ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
699303bfb495SBarry Smith - oa   - matrix values
699403bfb495SBarry Smith 
699503bfb495SBarry Smith   Output Parameter:
699603bfb495SBarry Smith . mat - the matrix
699703bfb495SBarry Smith 
699803bfb495SBarry Smith   Level: advanced
699903bfb495SBarry Smith 
700003bfb495SBarry Smith   Notes:
7001f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
7002292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
700303bfb495SBarry Smith 
70042ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
700503bfb495SBarry Smith 
70062ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
700703bfb495SBarry Smith 
70087b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
70097b55108eSBarry Smith 
7010dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
7011dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
7012dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
7013dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
701411a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
7015dca341c0SJed Brown   communication if it is known that only local entries will be set.
701603bfb495SBarry Smith 
70171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
7018db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
70192b26979fSBarry Smith @*/
7020d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
7021d71ae5a4SJacob Faibussowitsch {
702203bfb495SBarry Smith   Mat_MPIAIJ *maij;
702303bfb495SBarry Smith 
702403bfb495SBarry Smith   PetscFunctionBegin;
702508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
7026aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
7027aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
70289566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
70299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
70309566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
703103bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
70322205254eSKarl Rupp 
70338d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
703403bfb495SBarry Smith 
70359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
70369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
703703bfb495SBarry Smith 
70389566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
70399566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
704003bfb495SBarry Smith 
70419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70449566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70459566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
704703bfb495SBarry Smith }
704803bfb495SBarry Smith 
70494e84afc0SStefano Zampini typedef struct {
70504e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70514e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70524e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70534e84afc0SStefano Zampini 
70544e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70554e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70564e84afc0SStefano Zampini   PetscScalar *bufa;
70574e84afc0SStefano Zampini   Mat          P_oth;
70584e84afc0SStefano Zampini 
70594e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7060ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70614e84afc0SStefano Zampini 
7062ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70634e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70644e84afc0SStefano Zampini      of the temporary storage */
70654e84afc0SStefano Zampini   PetscBool reusesym;
70664e84afc0SStefano Zampini 
70674e84afc0SStefano Zampini   /* support for COO values insertion */
7068ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7069ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7070ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7071ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7072c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7073c215019aSStefano Zampini   PetscMemType mtype;
70744e84afc0SStefano Zampini 
70754e84afc0SStefano Zampini   /* customization */
70764e84afc0SStefano Zampini   PetscBool abmerge;
7077abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70784e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70794e84afc0SStefano Zampini 
7080ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7081d71ae5a4SJacob Faibussowitsch {
70824e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70834e84afc0SStefano Zampini   PetscInt             i;
70844e84afc0SStefano Zampini 
70854e84afc0SStefano Zampini   PetscFunctionBegin;
70869566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70879566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70889566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70899566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70909566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70919566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70929566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
709348a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70949566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70959566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70969566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70979566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70989566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70999566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
71003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71014e84afc0SStefano Zampini }
71024e84afc0SStefano Zampini 
7103fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7104fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7105fff043a9SJunchao Zhang  */
7106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7107d71ae5a4SJacob Faibussowitsch {
7108c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7109c215019aSStefano Zampini 
7110c215019aSStefano Zampini   PetscFunctionBegin;
71119566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7112c215019aSStefano Zampini   if (f) {
71139566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7114c215019aSStefano Zampini   } else {
7115c215019aSStefano Zampini     const PetscScalar *vv;
7116c215019aSStefano Zampini 
71179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7118c215019aSStefano Zampini     if (n && idx) {
7119c215019aSStefano Zampini       PetscScalar    *w  = v;
7120c215019aSStefano Zampini       const PetscInt *oi = idx;
7121c215019aSStefano Zampini       PetscInt        j;
7122c215019aSStefano Zampini 
7123c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7124c215019aSStefano Zampini     } else {
71259566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7126c215019aSStefano Zampini     }
71279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7128c215019aSStefano Zampini   }
71293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7130c215019aSStefano Zampini }
7131c215019aSStefano Zampini 
7132d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7133d71ae5a4SJacob Faibussowitsch {
71344e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
71354e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
71364e84afc0SStefano Zampini 
71374e84afc0SStefano Zampini   PetscFunctionBegin;
71384e84afc0SStefano Zampini   MatCheckProduct(C, 1);
713928b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71404e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71414e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
714248a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
714348a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71444e84afc0SStefano Zampini   }
71454e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7146abb89eb1SStefano Zampini 
7147abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
714808401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71499566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7150abb89eb1SStefano Zampini   }
71514e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71526497c311SBarry Smith     PetscInt noff;
71534e84afc0SStefano Zampini 
71546497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
71554e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71564e84afc0SStefano Zampini     if (noff) {
71576497c311SBarry Smith       PetscInt nown;
7158c215019aSStefano Zampini 
71596497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
71609566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71619566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71624e84afc0SStefano Zampini       n_o += noff;
71634e84afc0SStefano Zampini       n_d += nown;
71644e84afc0SStefano Zampini     } else {
7165c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7166c215019aSStefano Zampini 
71679566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71684e84afc0SStefano Zampini       n_d += mm->nz;
71694e84afc0SStefano Zampini     }
71704e84afc0SStefano Zampini   }
7171c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71729566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71739566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71744e84afc0SStefano Zampini   }
71759566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71774e84afc0SStefano Zampini }
71784e84afc0SStefano Zampini 
71794e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71804e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7181d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7182d71ae5a4SJacob Faibussowitsch {
71834e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7184ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71854e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71864e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71874e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71884e84afc0SStefano Zampini   IS                     glob      = NULL;
71894e84afc0SStefano Zampini   const char            *prefix;
71904e84afc0SStefano Zampini   char                   pprefix[256];
71914e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
719282a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
719382a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7194ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7195ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7196ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7197ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7198ddea5d60SJunchao Zhang 
71994e84afc0SStefano Zampini   MatProductType ptype;
7200d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
72014e84afc0SStefano Zampini   PetscMPIInt    size;
72024e84afc0SStefano Zampini 
72034e84afc0SStefano Zampini   PetscFunctionBegin;
72044e84afc0SStefano Zampini   MatCheckProduct(C, 1);
720528b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
72064e84afc0SStefano Zampini   ptype = product->type;
7207b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7208fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7209fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7210fa046f9fSJunchao Zhang   }
72114e84afc0SStefano Zampini   switch (ptype) {
72124e84afc0SStefano Zampini   case MATPRODUCT_AB:
72134e84afc0SStefano Zampini     A          = product->A;
72144e84afc0SStefano Zampini     P          = product->B;
72154e84afc0SStefano Zampini     m          = A->rmap->n;
72164e84afc0SStefano Zampini     n          = P->cmap->n;
72174e84afc0SStefano Zampini     M          = A->rmap->N;
72184e84afc0SStefano Zampini     N          = P->cmap->N;
7219ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
72204e84afc0SStefano Zampini     break;
72214e84afc0SStefano Zampini   case MATPRODUCT_AtB:
72224e84afc0SStefano Zampini     P          = product->A;
72234e84afc0SStefano Zampini     A          = product->B;
72244e84afc0SStefano Zampini     m          = P->cmap->n;
72254e84afc0SStefano Zampini     n          = A->cmap->n;
72264e84afc0SStefano Zampini     M          = P->cmap->N;
72274e84afc0SStefano Zampini     N          = A->cmap->N;
72284e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72294e84afc0SStefano Zampini     break;
72304e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
72314e84afc0SStefano Zampini     A          = product->A;
72324e84afc0SStefano Zampini     P          = product->B;
72334e84afc0SStefano Zampini     m          = P->cmap->n;
72344e84afc0SStefano Zampini     n          = P->cmap->n;
72354e84afc0SStefano Zampini     M          = P->cmap->N;
72364e84afc0SStefano Zampini     N          = P->cmap->N;
72374e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72384e84afc0SStefano Zampini     break;
7239d71ae5a4SJacob Faibussowitsch   default:
7240d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
72414e84afc0SStefano Zampini   }
72429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72434e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72444e84afc0SStefano Zampini 
72454e84afc0SStefano Zampini   /* defaults */
72464e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72474e84afc0SStefano Zampini     mp[i]    = NULL;
72484e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72494e84afc0SStefano Zampini     rmapt[i] = -1;
72504e84afc0SStefano Zampini     cmapt[i] = -1;
72514e84afc0SStefano Zampini     rmapa[i] = NULL;
72524e84afc0SStefano Zampini     cmapa[i] = NULL;
72534e84afc0SStefano Zampini   }
72544e84afc0SStefano Zampini 
72554e84afc0SStefano Zampini   /* customization */
72569566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72574e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72584e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72594e84afc0SStefano Zampini     if (product->api_user) {
7260d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72619566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72629566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7263d0609cedSBarry Smith       PetscOptionsEnd();
72644e84afc0SStefano Zampini     } else {
7265d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72669566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72679566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7268d0609cedSBarry Smith       PetscOptionsEnd();
7269abb89eb1SStefano Zampini     }
7270abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7271abb89eb1SStefano Zampini     if (product->api_user) {
7272d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72739566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7274d0609cedSBarry Smith       PetscOptionsEnd();
7275abb89eb1SStefano Zampini     } else {
7276d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72779566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7278d0609cedSBarry Smith       PetscOptionsEnd();
72794e84afc0SStefano Zampini     }
72804e84afc0SStefano Zampini   }
72814e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72824e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72839566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72869566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72879566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7288ddea5d60SJunchao Zhang 
7289ddea5d60SJunchao Zhang   cp = 0;
72904e84afc0SStefano Zampini   switch (ptype) {
72914e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72929566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72934e84afc0SStefano Zampini 
7294ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7295ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72964e84afc0SStefano Zampini       /* P is product->B */
72979566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72989566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72999566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73009566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73019566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73029566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73039566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73044e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73069566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73079566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73084e84afc0SStefano Zampini       rmapt[cp] = 1;
73094e84afc0SStefano Zampini       cmapt[cp] = 2;
73104e84afc0SStefano Zampini       cmapa[cp] = globidx;
73114e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73124e84afc0SStefano Zampini       cp++;
7313ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
73149566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
73159566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73169566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73179566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73189566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73199566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73204e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73219566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73229566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73234e84afc0SStefano Zampini       rmapt[cp] = 1;
73244e84afc0SStefano Zampini       cmapt[cp] = 1;
73254e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73264e84afc0SStefano Zampini       cp++;
73279566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
73289566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73299566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73309566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73319566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73329566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73334e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73349566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73359566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73364e84afc0SStefano Zampini       rmapt[cp] = 1;
73374e84afc0SStefano Zampini       cmapt[cp] = 2;
73384e84afc0SStefano Zampini       cmapa[cp] = p->garray;
73394e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73404e84afc0SStefano Zampini       cp++;
73414e84afc0SStefano Zampini     }
7342ddea5d60SJunchao Zhang 
7343ddea5d60SJunchao Zhang     /* A_off * P_other */
73444e84afc0SStefano Zampini     if (mmdata->P_oth) {
73459566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73469566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7347f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73489566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73499566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73509566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73519566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73529566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73539566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73549566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73554e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73569566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73579566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73584e84afc0SStefano Zampini       rmapt[cp] = 1;
73594e84afc0SStefano Zampini       cmapt[cp] = 2;
73604e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73614e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73624e84afc0SStefano Zampini       cp++;
73634e84afc0SStefano Zampini     }
73644e84afc0SStefano Zampini     break;
7365ddea5d60SJunchao Zhang 
73664e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73674e84afc0SStefano Zampini     /* A is product->B */
73689566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7369ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73709566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73719566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73729566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73739566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73749566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73759566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73764e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73779566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73789566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73799566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73804e84afc0SStefano Zampini       rmapt[cp] = 2;
73814e84afc0SStefano Zampini       rmapa[cp] = globidx;
73824e84afc0SStefano Zampini       cmapt[cp] = 2;
73834e84afc0SStefano Zampini       cmapa[cp] = globidx;
73844e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73854e84afc0SStefano Zampini       cp++;
73864e84afc0SStefano Zampini     } else {
73879566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73889566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73899566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73909566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73919566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73929566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73934e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73949566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73959566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73969566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73974e84afc0SStefano Zampini       rmapt[cp] = 1;
73984e84afc0SStefano Zampini       cmapt[cp] = 2;
73994e84afc0SStefano Zampini       cmapa[cp] = globidx;
74004e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74014e84afc0SStefano Zampini       cp++;
74029566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
74039566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74049566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74059566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74069566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74079566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74084e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74099566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74109566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74114e84afc0SStefano Zampini       rmapt[cp] = 2;
74124e84afc0SStefano Zampini       rmapa[cp] = p->garray;
74134e84afc0SStefano Zampini       cmapt[cp] = 2;
74144e84afc0SStefano Zampini       cmapa[cp] = globidx;
74154e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74164e84afc0SStefano Zampini       cp++;
74174e84afc0SStefano Zampini     }
74184e84afc0SStefano Zampini     break;
74194e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
74209566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
74214e84afc0SStefano Zampini     /* P is product->B */
74229566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
74239566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
74249566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
74259566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
74269566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74279566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74289566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74294e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
74309566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
74319566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74329566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
74334e84afc0SStefano Zampini     rmapt[cp] = 2;
74344e84afc0SStefano Zampini     rmapa[cp] = globidx;
74354e84afc0SStefano Zampini     cmapt[cp] = 2;
74364e84afc0SStefano Zampini     cmapa[cp] = globidx;
74374e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
74384e84afc0SStefano Zampini     cp++;
74394e84afc0SStefano Zampini     if (mmdata->P_oth) {
74409566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
74419566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7442f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74439566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74449566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74459566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74469566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74479566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74489566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74499566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74504e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74519566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74529566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74534e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74544e84afc0SStefano Zampini       cp++;
74559566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74569566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74579566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74589566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74599566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74609566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74614e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74629566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74639566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74644e84afc0SStefano Zampini       rmapt[cp] = 2;
74654e84afc0SStefano Zampini       rmapa[cp] = globidx;
74664e84afc0SStefano Zampini       cmapt[cp] = 2;
74674e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74684e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74694e84afc0SStefano Zampini       cp++;
74704e84afc0SStefano Zampini     }
74714e84afc0SStefano Zampini     break;
7472d71ae5a4SJacob Faibussowitsch   default:
7473d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74744e84afc0SStefano Zampini   }
74754e84afc0SStefano Zampini   /* sanity check */
74769371c9d4SSatish Balay   if (size > 1)
74779371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74784e84afc0SStefano Zampini 
74799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7480ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7481ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7482ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7483ddea5d60SJunchao Zhang   }
74844e84afc0SStefano Zampini   mmdata->cp             = cp;
74854e84afc0SStefano Zampini   C->product->data       = mmdata;
74864e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74874e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74884e84afc0SStefano Zampini 
7489c215019aSStefano Zampini   /* memory type */
7490c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74919566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7492d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7494c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7495d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74963214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7497c215019aSStefano Zampini 
74984e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7499ddea5d60SJunchao Zhang 
7500ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7501ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7502ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7503ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7504ddea5d60SJunchao Zhang   */
75054e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
75064e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
75074e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7508ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
75094e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
75104e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
75114e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
75124e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
75134e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
75144e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75154e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
75164e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7517ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7518ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
75194e84afc0SStefano Zampini       }
75204e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
75214e84afc0SStefano Zampini   }
7522ddea5d60SJunchao Zhang 
7523ddea5d60SJunchao Zhang   /*
7524ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7525ddea5d60SJunchao Zhang 
7526ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7527ddea5d60SJunchao Zhang 
7528d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7529ddea5d60SJunchao Zhang 
7530ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7531ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7532ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7533ddea5d60SJunchao Zhang 
7534ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7535da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7536ddea5d60SJunchao Zhang   */
75379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
75389566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7539ddea5d60SJunchao Zhang 
7540ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7541ddea5d60SJunchao Zhang   if (hasoffproc) {
75424e84afc0SStefano Zampini     PetscSF  msf;
75434e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75444e84afc0SStefano Zampini 
75459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7548ddea5d60SJunchao Zhang 
75494e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75504e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75514e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75524e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7553ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75544e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75554e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75564e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75574e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75584e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75594e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75604e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75614e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75624e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75634e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75644e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75654e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75664e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7567ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75684e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75694e84afc0SStefano Zampini               *coi++    = gr;
75704e84afc0SStefano Zampini               *idxoff++ = j;
75714e84afc0SStefano Zampini             }
75724e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75734e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75744e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75754e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75764e84afc0SStefano Zampini             } else { /* offdiag */
75774e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75784e84afc0SStefano Zampini             }
75794e84afc0SStefano Zampini             ncoo_o += nz;
7580ddea5d60SJunchao Zhang           } else { /* this is a local row */
75814e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75824e84afc0SStefano Zampini           }
75834e84afc0SStefano Zampini         }
75844e84afc0SStefano Zampini       }
75854e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75864e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75874e84afc0SStefano Zampini     }
75884e84afc0SStefano Zampini 
75899566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75906497c311SBarry Smith     PetscInt incoo_o;
75916497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75926497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75939566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75949566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75954e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75979566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75989566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75999566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
76009566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
76019566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7602ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
76039566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
76044e84afc0SStefano Zampini     coo_i = coo_i2;
76054e84afc0SStefano Zampini     coo_j = coo_j2;
76064e84afc0SStefano Zampini   } else { /* no offproc values insertion */
76074e84afc0SStefano Zampini     ncoo = ncoo_d;
76089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7609c215019aSStefano Zampini 
76109566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
76119566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
76129566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
76134e84afc0SStefano Zampini   }
7614c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
76154e84afc0SStefano Zampini 
7616ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
76174e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
76184e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
76194e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
76204e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
76214e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
76224e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
76234e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
76244e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
76254e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
76264e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
76274e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
76284e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
76294e84afc0SStefano Zampini 
76304e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7631ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7632ddea5d60SJunchao Zhang       /* fill coo_i */
76334e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76344e84afc0SStefano Zampini         const PetscInt gr = i + rs;
76354e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
76364e84afc0SStefano Zampini       }
7637ddea5d60SJunchao Zhang       /* fill coo_j */
7638ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
76399566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7640ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7641ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7642ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
76434e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76444e84afc0SStefano Zampini       }
76454e84afc0SStefano Zampini       ncoo_d += mm->nz;
7646ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76474e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76484e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76494e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76504e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7651ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76524e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7653ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76544e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76554e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76564e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7657ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76584e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76594e84afc0SStefano Zampini           }
76604e84afc0SStefano Zampini           ncoo_d += nz;
76614e84afc0SStefano Zampini         }
76624e84afc0SStefano Zampini       }
76634e84afc0SStefano Zampini     }
76644e84afc0SStefano Zampini   }
766548a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76669566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
766748a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76689566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7669ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76709566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76714e84afc0SStefano Zampini 
767239cfb508SMark Adams   /* set block sizes */
767339cfb508SMark Adams   A = product->A;
767439cfb508SMark Adams   P = product->B;
767539cfb508SMark Adams   switch (ptype) {
767639cfb508SMark Adams   case MATPRODUCT_PtAP:
767739cfb508SMark Adams     if (P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
767839cfb508SMark Adams     break;
767939cfb508SMark Adams   case MATPRODUCT_RARt:
768039cfb508SMark Adams     if (P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
768139cfb508SMark Adams     break;
768239cfb508SMark Adams   case MATPRODUCT_ABC:
768339cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
768439cfb508SMark Adams     break;
768539cfb508SMark Adams   case MATPRODUCT_AB:
768639cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
768739cfb508SMark Adams     break;
768839cfb508SMark Adams   case MATPRODUCT_AtB:
768939cfb508SMark Adams     if (A->cmap->bs > 1 || P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
769039cfb508SMark Adams     break;
769139cfb508SMark Adams   case MATPRODUCT_ABt:
769239cfb508SMark Adams     if (A->rmap->bs > 1 || P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
769339cfb508SMark Adams     break;
769439cfb508SMark Adams   default:
769539cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
769639cfb508SMark Adams   }
769739cfb508SMark Adams 
76984e84afc0SStefano Zampini   /* preallocate with COO data */
76999566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
77009566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
77013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77024e84afc0SStefano Zampini }
77034e84afc0SStefano Zampini 
7704d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7705d71ae5a4SJacob Faibussowitsch {
77064e84afc0SStefano Zampini   Mat_Product *product = mat->product;
77074e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
77084e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7709abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
77104e84afc0SStefano Zampini #else
77114e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
77124e84afc0SStefano Zampini #endif
77134e84afc0SStefano Zampini 
77144e84afc0SStefano Zampini   PetscFunctionBegin;
77154e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
77164e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
771748a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
771865e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7719abb89eb1SStefano Zampini     switch (product->type) {
7720abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7721abb89eb1SStefano Zampini       if (product->api_user) {
7722d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
77239566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7724d0609cedSBarry Smith         PetscOptionsEnd();
7725abb89eb1SStefano Zampini       } else {
7726d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
77279566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7728d0609cedSBarry Smith         PetscOptionsEnd();
7729abb89eb1SStefano Zampini       }
7730abb89eb1SStefano Zampini       break;
7731abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7732abb89eb1SStefano Zampini       if (product->api_user) {
7733d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
77349566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7735d0609cedSBarry Smith         PetscOptionsEnd();
7736abb89eb1SStefano Zampini       } else {
7737d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
77389566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7739d0609cedSBarry Smith         PetscOptionsEnd();
7740abb89eb1SStefano Zampini       }
7741abb89eb1SStefano Zampini       break;
7742abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7743abb89eb1SStefano Zampini       if (product->api_user) {
7744d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
77459566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7746d0609cedSBarry Smith         PetscOptionsEnd();
7747abb89eb1SStefano Zampini       } else {
7748d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
77499566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7750d0609cedSBarry Smith         PetscOptionsEnd();
7751abb89eb1SStefano Zampini       }
7752abb89eb1SStefano Zampini       break;
7753d71ae5a4SJacob Faibussowitsch     default:
7754d71ae5a4SJacob Faibussowitsch       break;
7755abb89eb1SStefano Zampini     }
7756abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7757abb89eb1SStefano Zampini   }
77584e84afc0SStefano Zampini #endif
77594e84afc0SStefano Zampini   if (match) {
77604e84afc0SStefano Zampini     switch (product->type) {
77614e84afc0SStefano Zampini     case MATPRODUCT_AB:
77624e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7763d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7764d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7765d71ae5a4SJacob Faibussowitsch       break;
7766d71ae5a4SJacob Faibussowitsch     default:
7767d71ae5a4SJacob Faibussowitsch       break;
77684e84afc0SStefano Zampini     }
77694e84afc0SStefano Zampini   }
77704e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77719566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
777381824310SBarry Smith }
777498921bdaSJacob Faibussowitsch 
777598921bdaSJacob Faibussowitsch /*
777672833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
777772833a62Smarkadams4 
777872833a62Smarkadams4    n - the number of block indices in cc[]
777972833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
778072833a62Smarkadams4 */
7781d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7782d71ae5a4SJacob Faibussowitsch {
778372833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
778472833a62Smarkadams4   const PetscInt *idx;
778572833a62Smarkadams4 
778672833a62Smarkadams4   PetscFunctionBegin;
778772833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
778872833a62Smarkadams4   if (nidx) {
778972833a62Smarkadams4     cnt     = 0;
779072833a62Smarkadams4     cc[cnt] = idx[0] / bs;
779172833a62Smarkadams4     for (j = 1; j < nidx; j++) {
779272833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
779372833a62Smarkadams4     }
779472833a62Smarkadams4   }
779572833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
779672833a62Smarkadams4   *n = cnt + 1;
77973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
779872833a62Smarkadams4 }
779972833a62Smarkadams4 
780072833a62Smarkadams4 /*
780172833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
780272833a62Smarkadams4 
780372833a62Smarkadams4     ncollapsed - the number of block indices
780472833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
780572833a62Smarkadams4 */
7806d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7807d71ae5a4SJacob Faibussowitsch {
780872833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
780972833a62Smarkadams4 
781072833a62Smarkadams4   PetscFunctionBegin;
781172833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
781272833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
781372833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
781472833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
78159371c9d4SSatish Balay     cprevtmp = cprev;
78169371c9d4SSatish Balay     cprev    = merged;
78179371c9d4SSatish Balay     merged   = cprevtmp;
781872833a62Smarkadams4   }
781972833a62Smarkadams4   *ncollapsed = nprev;
782072833a62Smarkadams4   if (collapsed) *collapsed = cprev;
78213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
782272833a62Smarkadams4 }
782372833a62Smarkadams4 
78242d776b49SBarry Smith /*
782572833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
782672833a62Smarkadams4 
782772833a62Smarkadams4  Input Parameter:
782872833a62Smarkadams4  . Amat - matrix
782972833a62Smarkadams4  - symmetrize - make the result symmetric
783072833a62Smarkadams4  + scale - scale with diagonal
783172833a62Smarkadams4 
783272833a62Smarkadams4  Output Parameter:
783372833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
783472833a62Smarkadams4 
783572833a62Smarkadams4 */
7836e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7837d71ae5a4SJacob Faibussowitsch {
783872833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
783972833a62Smarkadams4   MPI_Comm  comm;
784072833a62Smarkadams4   Mat       Gmat;
784172833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
784272833a62Smarkadams4   Mat       a, b, c;
784372833a62Smarkadams4   MatType   jtype;
784472833a62Smarkadams4 
784572833a62Smarkadams4   PetscFunctionBegin;
784672833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
784772833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
784872833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
784972833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
785072833a62Smarkadams4   nloc = (Iend - Istart) / bs;
785172833a62Smarkadams4 
785272833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
785372833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
785472833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
785572833a62Smarkadams4 
785672833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
785772833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
785872833a62Smarkadams4      implementation */
785972833a62Smarkadams4   if (bs > 1) {
786072833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
786172833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
786272833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
786372833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
786472833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
786572833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
786672833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
78672cf69117Smarkadams4       MatScalar *aa, val, *AA;
78682cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
78696497c311SBarry Smith 
78709371c9d4SSatish Balay       if (isseqaij) {
78719371c9d4SSatish Balay         a = Amat;
78729371c9d4SSatish Balay         b = NULL;
78739371c9d4SSatish Balay       } else {
787472833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78759371c9d4SSatish Balay         a             = d->A;
78769371c9d4SSatish Balay         b             = d->B;
787772833a62Smarkadams4       }
787872833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
787932603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
788072833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78812cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
788259ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
78836497c311SBarry Smith 
788459ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
788559ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
788659ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
788759ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
788872833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
788959ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
789059ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
789159ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
789259ee9f9fSPierre Jolivet             else {
789359ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
789459ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
789559ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
789672833a62Smarkadams4               }
789759ee9f9fSPierre Jolivet             }
789859ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
789959ee9f9fSPierre Jolivet           }
790059ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
790172833a62Smarkadams4           if (!ok) {
790272833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
790359ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
790472833a62Smarkadams4             goto old_bs;
790572833a62Smarkadams4           }
790672833a62Smarkadams4         }
790772833a62Smarkadams4       }
790872833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
790972833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
791072833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
79112cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
791272833a62Smarkadams4       // diag
791372833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
791472833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
79156497c311SBarry Smith 
791672833a62Smarkadams4         ai = aseq->i;
791772833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
791872833a62Smarkadams4         aj = aseq->j + ai[brow];
79196497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
792072833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
792172833a62Smarkadams4           val        = 0;
7922e02fb3cdSMark Adams           if (index_size == 0) {
79236497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
792472833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
79256497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
792672833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
792772833a62Smarkadams4               }
792872833a62Smarkadams4             }
7929e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79306497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79316497c311SBarry Smith               PetscInt ii = index[iii];
7932e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
79336497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
79346497c311SBarry Smith                 PetscInt jj = index[jjj];
7935cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7936e02fb3cdSMark Adams               }
7937e02fb3cdSMark Adams             }
7938e02fb3cdSMark Adams           }
7939835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
794072833a62Smarkadams4           AA[k / bs] = val;
794172833a62Smarkadams4         }
794272833a62Smarkadams4         grow = Istart / bs + brow / bs;
794366521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
794472833a62Smarkadams4       }
794572833a62Smarkadams4       // off-diag
794672833a62Smarkadams4       if (ismpiaij) {
794772833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
794872833a62Smarkadams4         const PetscScalar *vals;
794972833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
79506497c311SBarry Smith 
795172833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
795272833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
795372833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
79546497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
795559ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
795672833a62Smarkadams4             AA[k / bs] = 0;
795772833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
795872833a62Smarkadams4           }
795972833a62Smarkadams4           nc = ncols / bs;
796072833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7961e02fb3cdSMark Adams           if (index_size == 0) {
79626497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
796372833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79646497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79656497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7966835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
796772833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
796872833a62Smarkadams4                 }
796972833a62Smarkadams4               }
797072833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
797172833a62Smarkadams4             }
7972e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79736497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79746497c311SBarry Smith               PetscInt ii = index[iii];
7975e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79766497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79776497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
79786497c311SBarry Smith                   PetscInt jj = index[jjj];
7979e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7980e02fb3cdSMark Adams                 }
7981e02fb3cdSMark Adams               }
7982e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7983e02fb3cdSMark Adams             }
7984e02fb3cdSMark Adams           }
798572833a62Smarkadams4           grow = Istart / bs + brow / bs;
798666521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
798772833a62Smarkadams4         }
798872833a62Smarkadams4       }
798972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
799072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79912cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
799272833a62Smarkadams4     } else {
799372833a62Smarkadams4       const PetscScalar *vals;
799472833a62Smarkadams4       const PetscInt    *idx;
799572833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
799672833a62Smarkadams4     old_bs:
799772833a62Smarkadams4       /*
799872833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
799972833a62Smarkadams4        */
800072833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
800132603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
800272833a62Smarkadams4       if (isseqaij) {
800372833a62Smarkadams4         PetscInt max_d_nnz;
80046497c311SBarry Smith 
800572833a62Smarkadams4         /*
800672833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
800772833a62Smarkadams4          */
800872833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
800972833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
801072833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
801148a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
801272833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
801372833a62Smarkadams4       } else if (ismpiaij) {
801472833a62Smarkadams4         Mat             Daij, Oaij;
801572833a62Smarkadams4         const PetscInt *garray;
801672833a62Smarkadams4         PetscInt        max_d_nnz;
80176497c311SBarry Smith 
801872833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
801972833a62Smarkadams4         /*
802072833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
802172833a62Smarkadams4          */
802272833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
802372833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
802472833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
802548a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
802672833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
802772833a62Smarkadams4         /*
802872833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
802972833a62Smarkadams4          */
803072833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
803172833a62Smarkadams4           o_nnz[jj] = 0;
803272833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
803372833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
803472833a62Smarkadams4             o_nnz[jj] += ncols;
803572833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
803672833a62Smarkadams4           }
803772833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
803872833a62Smarkadams4         }
803972833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
804072833a62Smarkadams4       /* get scalar copy (norms) of matrix */
804172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
804272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
804372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
804472833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
804572833a62Smarkadams4         PetscInt dest_row = Ii / bs;
80466497c311SBarry Smith 
804772833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
804872833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
804972833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
805072833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
80516497c311SBarry Smith 
805272833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
805372833a62Smarkadams4         }
805472833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
805572833a62Smarkadams4       }
805672833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
805772833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
805872833a62Smarkadams4     }
805972833a62Smarkadams4   } else {
80602d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
80612d776b49SBarry Smith     else {
80622d776b49SBarry Smith       Gmat = Amat;
80632d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
80642d776b49SBarry Smith     }
80659371c9d4SSatish Balay     if (isseqaij) {
80669371c9d4SSatish Balay       a = Gmat;
80679371c9d4SSatish Balay       b = NULL;
80689371c9d4SSatish Balay     } else {
806972833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
80709371c9d4SSatish Balay       a             = d->A;
80719371c9d4SSatish Balay       b             = d->B;
807272833a62Smarkadams4     }
80732d776b49SBarry Smith     if (filter >= 0 || scale) {
80742d776b49SBarry Smith       /* take absolute value of each entry */
807572833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
807672833a62Smarkadams4         MatInfo      info;
807772833a62Smarkadams4         PetscScalar *avals;
80786497c311SBarry Smith 
807972833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
808072833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
808172833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
808272833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
808372833a62Smarkadams4       }
808472833a62Smarkadams4     }
80852d776b49SBarry Smith   }
808672833a62Smarkadams4   if (symmetrize) {
8087b94d7dedSBarry Smith     PetscBool isset, issym;
80886497c311SBarry Smith 
8089b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8090b94d7dedSBarry Smith     if (!isset || !issym) {
809172833a62Smarkadams4       Mat matTrans;
80926497c311SBarry Smith 
809372833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80941fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
809572833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
809672833a62Smarkadams4     }
809772833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80982d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
809972833a62Smarkadams4   if (scale) {
810072833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
810172833a62Smarkadams4     Vec diag;
81026497c311SBarry Smith 
810372833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
810472833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
810572833a62Smarkadams4     PetscCall(VecReciprocal(diag));
810672833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
810772833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
810872833a62Smarkadams4     PetscCall(VecDestroy(&diag));
810972833a62Smarkadams4   }
811072833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
81112d776b49SBarry Smith   if (filter >= 0) {
81122ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
81132ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
81142d776b49SBarry Smith   }
811572833a62Smarkadams4   *a_Gmat = Gmat;
81163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
811772833a62Smarkadams4 }
811872833a62Smarkadams4 
811972833a62Smarkadams4 /*
812098921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
812198921bdaSJacob Faibussowitsch */
812298921bdaSJacob Faibussowitsch 
812398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
81249566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
81259566063dSJacob Faibussowitsch #undef PetscCall
81269371c9d4SSatish Balay #define PetscCall(...) \
81279371c9d4SSatish Balay   do { \
81285f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
812998921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
813098921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
813198921bdaSJacob Faibussowitsch       return; \
813298921bdaSJacob Faibussowitsch     } \
813398921bdaSJacob Faibussowitsch   } while (0)
813498921bdaSJacob Faibussowitsch 
813598921bdaSJacob Faibussowitsch #undef SETERRQ
81369371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
81379371c9d4SSatish Balay   do { \
813898921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
813998921bdaSJacob Faibussowitsch     return; \
814098921bdaSJacob Faibussowitsch   } while (0)
814198921bdaSJacob Faibussowitsch 
814298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
814398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
814498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
814598921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
814698921bdaSJacob Faibussowitsch #else
814798921bdaSJacob Faibussowitsch #endif
8148d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8149d71ae5a4SJacob Faibussowitsch {
815098921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
815198921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
815298921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
815398921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
815498921bdaSJacob Faibussowitsch   PetscScalar value;
815598921bdaSJacob Faibussowitsch 
815698921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
815798921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
81585f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
815998921bdaSJacob Faibussowitsch   {
816098921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
816198921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
816298921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
816398921bdaSJacob Faibussowitsch 
816498921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
816598921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
816698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
816798921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
816898921bdaSJacob Faibussowitsch     MatScalar  *aa;
8169f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
817098921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
817198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
817298921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
817398921bdaSJacob Faibussowitsch     MatScalar  *ba;
817498921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
817598921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
817698921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
817798921bdaSJacob Faibussowitsch 
817898921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
817998921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
818098921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
818198921bdaSJacob Faibussowitsch 
818298921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81849566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
818598921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
818698921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81876bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
818898921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
818998921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
819098921bdaSJacob Faibussowitsch         lastcol1 = -1;
819198921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
819298921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
819398921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
819498921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
819598921bdaSJacob Faibussowitsch         low1     = 0;
819698921bdaSJacob Faibussowitsch         high1    = nrow1;
819798921bdaSJacob Faibussowitsch         lastcol2 = -1;
819898921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
819998921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
820098921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
820198921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
820298921bdaSJacob Faibussowitsch         low2     = 0;
820398921bdaSJacob Faibussowitsch         high2    = nrow2;
820498921bdaSJacob Faibussowitsch 
820598921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
820698921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
820798921bdaSJacob Faibussowitsch           else value = v[i + j * m];
820898921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
820998921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
821098921bdaSJacob Faibussowitsch             col = in[j] - cstart;
821198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
821298921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
821398921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
821463a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
821598921bdaSJacob Faibussowitsch           } else {
821698921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
821748a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
821898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8219eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
822098921bdaSJacob Faibussowitsch               col--;
822198921bdaSJacob Faibussowitsch #else
822298921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
822398921bdaSJacob Faibussowitsch #endif
8224f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8225eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
822698921bdaSJacob Faibussowitsch                 col = in[j];
822798921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
822898921bdaSJacob Faibussowitsch                 B        = aij->B;
822998921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
82309371c9d4SSatish Balay                 bimax    = b->imax;
82319371c9d4SSatish Balay                 bi       = b->i;
82329371c9d4SSatish Balay                 bilen    = b->ilen;
82339371c9d4SSatish Balay                 bj       = b->j;
823498921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
823598921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
823698921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
823798921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
823898921bdaSJacob Faibussowitsch                 low2     = 0;
823998921bdaSJacob Faibussowitsch                 high2    = nrow2;
824098921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
824198921bdaSJacob Faibussowitsch                 ba       = b->a;
824298921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
824398921bdaSJacob Faibussowitsch               }
824498921bdaSJacob Faibussowitsch             } else col = in[j];
824598921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
824698921bdaSJacob Faibussowitsch           }
824798921bdaSJacob Faibussowitsch         }
824898921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
824998921bdaSJacob Faibussowitsch         if (roworiented) {
82509566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
825198921bdaSJacob Faibussowitsch         } else {
82529566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
825398921bdaSJacob Faibussowitsch         }
825498921bdaSJacob Faibussowitsch       }
825598921bdaSJacob Faibussowitsch     }
82569566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
82579566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
825898921bdaSJacob Faibussowitsch   }
825998921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
826098921bdaSJacob Faibussowitsch }
826172833a62Smarkadams4 
826298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
826398921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
826498921bdaSJacob Faibussowitsch  * original definitions */
82659566063dSJacob Faibussowitsch #undef PetscCall
826698921bdaSJacob Faibussowitsch #undef SETERRQ
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